Articles | Volume 14, issue 8
Geosci. Model Dev., 14, 5049–5062, 2021
https://doi.org/10.5194/gmd-14-5049-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Geosci. Model Dev., 14, 5049–5062, 2021
https://doi.org/10.5194/gmd-14-5049-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
13 Aug 2021
Development and technical paper
| 13 Aug 2021
Optical model for the Baltic Sea with an explicit CDOM state variable: a case study with Model ERGOM (version 1.2)
Thomas Neumann et al.
Related authors
Matthias Gröger, Manja Placke, H. E. Markus Meier, Florian Börgel, Sandra-Esther Brunnabend, Cyril Dutheil, Ulf Gräwe, Magnus Hieronymus, Thomas Neumann, Hagen Radtke, Semjon Schimanke, Jian Su, and Germo Väli
Geosci. Model Dev., 15, 8613–8638, https://doi.org/10.5194/gmd-15-8613-2022, https://doi.org/10.5194/gmd-15-8613-2022, 2022
Short summary
Short summary
Comparisons of oceanographic climate data from different models often suffer from different model setups, forcing fields, and output of variables. This paper provides a protocol to harmonize these elements to set up multidecadal simulations for the Baltic Sea, a marginal sea in Europe. First results are shown from six different model simulations from four different model platforms. Topical studies for upwelling, marine heat waves, and stratification are also assessed.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Thomas Neumann, Herbert Siegel, Matthias Moros, Monika Gerth, Madline Kniebusch, and Daniel Heydebreck
Ocean Sci., 16, 767–780, https://doi.org/10.5194/os-16-767-2020, https://doi.org/10.5194/os-16-767-2020, 2020
Short summary
Short summary
The bottom water of the northern Baltic Sea usually is well oxygenated. We used a combined approach of numerical model simulations and in situ observations to investigate processes responsible for a regular ventilation of the Bothnian Bay. Surface water masses from the Bothnian Sea and the Bothnian Bay mix at the link between both regions. In winter, when water temperature is low, the resulting density is large enough that the water descends and replaces old bottom water.
Daniel Neumann, Matthias Karl, Hagen Radtke, Volker Matthias, René Friedland, and Thomas Neumann
Ocean Sci., 16, 115–134, https://doi.org/10.5194/os-16-115-2020, https://doi.org/10.5194/os-16-115-2020, 2020
Short summary
Short summary
The study evaluates how much bioavailable nitrogen is contributed to the nitrogen budget of the western Baltic Sea by deposition of shipping-emitted nitrogen oxides. Bioavailable nitrogen compounds are nutrients for phytoplankton (algae). Excessive input of nutrients into water bodies may lead to eutrophication: more algal blooms with subsequently more oxygen limitation at the seafloor. Hence, reducing shipping emissions might reduce the anthropogenic pressure on the marine ecosystem.
Hagen Radtke, Marko Lipka, Dennis Bunke, Claudia Morys, Jana Woelfel, Bronwyn Cahill, Michael E. Böttcher, Stefan Forster, Thomas Leipe, Gregor Rehder, and Thomas Neumann
Geosci. Model Dev., 12, 275–320, https://doi.org/10.5194/gmd-12-275-2019, https://doi.org/10.5194/gmd-12-275-2019, 2019
Short summary
Short summary
This paper describes a coupled benthic–pelagic biogeochemical model, ERGOM-SED. We demonstrate its use in a one-dimensional physical model, which is horizontally integrated and vertically resolved. We describe the application of the model to seven stations in the south-western Baltic Sea. The model was calibrated using pore water profiles from these stations. We compare the model results to these and to measured sediment compositions, benthopelagic fluxes and bioturbation intensities.
Daniel Neumann, Hagen Radtke, Matthias Karl, and Thomas Neumann
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-365, https://doi.org/10.5194/bg-2018-365, 2018
Publication in BG not foreseen
Short summary
Short summary
The contribution of atmospheric nitrogen deposition to the marine dissolved inorganic nitrogen (DIN) pool of the North and Baltic Sea was assessed for the year 2012. Atmospheric deposition accounted for approximately 10 % to 15 % of the DIN but its residence time differed between both water bodies. The nitrogen contributions of atmospheric shipping and agricultural imissions also were assessed. Particularly the latter source had a large impact in coastal regions.
Daniel Neumann, Matthias Karl, Hagen Radtke, and Thomas Neumann
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-364, https://doi.org/10.5194/bg-2018-364, 2018
Manuscript not accepted for further review
Short summary
Short summary
Atmospheric nitrogen deposition contributes 20 % to 40 % to bioavailable nitrogen inputs into the North Sea and Baltic Sea. Excessive bioavailable nitrogen may lead to intensified algal blooms in these water bodies resulting in several negative consequences for the marine ecosystem. We traced atmospheric nitrogen in the marine ecosystem via an ecosystem model and estimated the contribution of atmospheric nitrogen to plankton biomass in different regions of the North and Baltic Sea over five years.
Daniel Neumann, René Friedland, Matthias Karl, Hagen Radtke, Volker Matthias, and Thomas Neumann
Ocean Sci. Discuss., https://doi.org/10.5194/os-2018-71, https://doi.org/10.5194/os-2018-71, 2018
Revised manuscript not accepted
Short summary
Short summary
We found that refining the spatial resolution of nitrogen deposition data had low impact on marine nitrogen compounds compared to the impact by nitrogen deposition data sets of different origin (other model). The shipping sector had a contribution of up to 10 % to the marine dissolved inorganic nitrogen.
Matthias Gröger, Manja Placke, H. E. Markus Meier, Florian Börgel, Sandra-Esther Brunnabend, Cyril Dutheil, Ulf Gräwe, Magnus Hieronymus, Thomas Neumann, Hagen Radtke, Semjon Schimanke, Jian Su, and Germo Väli
Geosci. Model Dev., 15, 8613–8638, https://doi.org/10.5194/gmd-15-8613-2022, https://doi.org/10.5194/gmd-15-8613-2022, 2022
Short summary
Short summary
Comparisons of oceanographic climate data from different models often suffer from different model setups, forcing fields, and output of variables. This paper provides a protocol to harmonize these elements to set up multidecadal simulations for the Baltic Sea, a marginal sea in Europe. First results are shown from six different model simulations from four different model platforms. Topical studies for upwelling, marine heat waves, and stratification are also assessed.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Kandice L. Harper, Celine Lamarche, Andrew Hartley, Philippe Peylin, Catherine Ottlé, Vladislav Bastrikov, Rodrigo San Martín, Sylvia I. Bohnenstengel, Grit Kirches, Martin Boettcher, Roman Shevchuk, Carsten Brockmann, and Pierre Defourny
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-296, https://doi.org/10.5194/essd-2022-296, 2022
Preprint under review for ESSD
Short summary
Short summary
We built a spatially explicit annual PFT dataset for 1992–2020 exhibiting intraclass spatial variability in PFT fractional cover at 300 m. For each year, 14 maps of PFTs percentage cover are produced: bare soil, water, permanent snow/ice, built, managed grasses, natural grasses, and trees and shrubs each split into leaf type and seasonality. ORCHIDEE and JULES model simulations indicate significant differences in simulated carbon, water, and energy fluxes in some regions using this new PFT set.
Martti Honkanen, Jens Daniel Müller, Jukka Seppälä, Gregor Rehder, Sami Kielosto, Pasi Ylöstalo, Timo Mäkelä, Juha Hatakka, and Lauri Laakso
Ocean Sci., 17, 1657–1675, https://doi.org/10.5194/os-17-1657-2021, https://doi.org/10.5194/os-17-1657-2021, 2021
Short summary
Short summary
The exchange of carbon dioxide (CO2) between the sea and the atmosphere is regulated by the gradient of CO2 partial pressure (pCO2) between the sea and the air. The daily variation of the seawater pCO2 recorded at the fixed station Utö in the Baltic Sea was found to be mainly biologically driven. Calculation of the annual net exchange of CO2 between the sea and atmosphere based on daily measurements of pCO2 carried out using the same sampling time every day could introduce a bias of up to 12 %.
Thomas Neumann, Herbert Siegel, Matthias Moros, Monika Gerth, Madline Kniebusch, and Daniel Heydebreck
Ocean Sci., 16, 767–780, https://doi.org/10.5194/os-16-767-2020, https://doi.org/10.5194/os-16-767-2020, 2020
Short summary
Short summary
The bottom water of the northern Baltic Sea usually is well oxygenated. We used a combined approach of numerical model simulations and in situ observations to investigate processes responsible for a regular ventilation of the Bothnian Bay. Surface water masses from the Bothnian Sea and the Bothnian Bay mix at the link between both regions. In winter, when water temperature is low, the resulting density is large enough that the water descends and replaces old bottom water.
Daniel Neumann, Matthias Karl, Hagen Radtke, Volker Matthias, René Friedland, and Thomas Neumann
Ocean Sci., 16, 115–134, https://doi.org/10.5194/os-16-115-2020, https://doi.org/10.5194/os-16-115-2020, 2020
Short summary
Short summary
The study evaluates how much bioavailable nitrogen is contributed to the nitrogen budget of the western Baltic Sea by deposition of shipping-emitted nitrogen oxides. Bioavailable nitrogen compounds are nutrients for phytoplankton (algae). Excessive input of nutrients into water bodies may lead to eutrophication: more algal blooms with subsequently more oxygen limitation at the seafloor. Hence, reducing shipping emissions might reduce the anthropogenic pressure on the marine ecosystem.
Hagen Radtke, Marko Lipka, Dennis Bunke, Claudia Morys, Jana Woelfel, Bronwyn Cahill, Michael E. Böttcher, Stefan Forster, Thomas Leipe, Gregor Rehder, and Thomas Neumann
Geosci. Model Dev., 12, 275–320, https://doi.org/10.5194/gmd-12-275-2019, https://doi.org/10.5194/gmd-12-275-2019, 2019
Short summary
Short summary
This paper describes a coupled benthic–pelagic biogeochemical model, ERGOM-SED. We demonstrate its use in a one-dimensional physical model, which is horizontally integrated and vertically resolved. We describe the application of the model to seven stations in the south-western Baltic Sea. The model was calibrated using pore water profiles from these stations. We compare the model results to these and to measured sediment compositions, benthopelagic fluxes and bioturbation intensities.
Daniel Neumann, Hagen Radtke, Matthias Karl, and Thomas Neumann
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-365, https://doi.org/10.5194/bg-2018-365, 2018
Publication in BG not foreseen
Short summary
Short summary
The contribution of atmospheric nitrogen deposition to the marine dissolved inorganic nitrogen (DIN) pool of the North and Baltic Sea was assessed for the year 2012. Atmospheric deposition accounted for approximately 10 % to 15 % of the DIN but its residence time differed between both water bodies. The nitrogen contributions of atmospheric shipping and agricultural imissions also were assessed. Particularly the latter source had a large impact in coastal regions.
Daniel Neumann, Matthias Karl, Hagen Radtke, and Thomas Neumann
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-364, https://doi.org/10.5194/bg-2018-364, 2018
Manuscript not accepted for further review
Short summary
Short summary
Atmospheric nitrogen deposition contributes 20 % to 40 % to bioavailable nitrogen inputs into the North Sea and Baltic Sea. Excessive bioavailable nitrogen may lead to intensified algal blooms in these water bodies resulting in several negative consequences for the marine ecosystem. We traced atmospheric nitrogen in the marine ecosystem via an ecosystem model and estimated the contribution of atmospheric nitrogen to plankton biomass in different regions of the North and Baltic Sea over five years.
Daniel Odermatt, Olaf Danne, Petra Philipson, and Carsten Brockmann
Earth Syst. Sci. Data, 10, 1527–1549, https://doi.org/10.5194/essd-10-1527-2018, https://doi.org/10.5194/essd-10-1527-2018, 2018
Short summary
Short summary
The Diversity II inland water database consists of remotely sensed water quality information for more than 300 lakes in the whole world. It was derived from optical and thermal imagery acquired by the ESA ENVISAT satellite between 2002 and 2012. The database consists of spatially resolved monthly, yearly and 9-year averages for 10 geophysical parameters. Its practical usage is demonstrated by means of several case studies on lake-specific processes and regime shifts.
Alexander Kokhanovsky, Maxim Lamare, Biagio Di Mauro, Ghislain Picard, Laurent Arnaud, Marie Dumont, François Tuzet, Carsten Brockmann, and Jason E. Box
The Cryosphere, 12, 2371–2382, https://doi.org/10.5194/tc-12-2371-2018, https://doi.org/10.5194/tc-12-2371-2018, 2018
Short summary
Short summary
This work presents a new technique with which to derive the snow microphysical and optical properties from snow spectral reflectance measurements. The technique is robust and easy to use, and it does not require the extraction of snow samples from a given snowpack. It can be used in processing satellite imagery over extended fresh dry, wet and polluted snowfields.
Daniel Neumann, René Friedland, Matthias Karl, Hagen Radtke, Volker Matthias, and Thomas Neumann
Ocean Sci. Discuss., https://doi.org/10.5194/os-2018-71, https://doi.org/10.5194/os-2018-71, 2018
Revised manuscript not accepted
Short summary
Short summary
We found that refining the spatial resolution of nitrogen deposition data had low impact on marine nitrogen compounds compared to the impact by nitrogen deposition data sets of different origin (other model). The shipping sector had a contribution of up to 10 % to the marine dissolved inorganic nitrogen.
Lena Kritten, Rene Preusker, Carsten Brockmann, Tonio Fincke, Sampsa Koponen, and Jürgen Fischer
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2018-5, https://doi.org/10.5194/essd-2018-5, 2018
Revised manuscript has not been submitted
Short summary
Short summary
This article provides the description and validation of a database storing simulated spectra of water remote sensing reflectance. This reflectance is e.g. derived from satellite measurements in order to gain information on ocean and inland water constituents. The database can be used as a forward model for the retrieval of water optical properties. It was generated using a radiative transfer model including all important optical processes in atmosphere and ocean.
Ewa J. Kwiatkowska, Kevin Ruddick, Didier Ramon, Quinten Vanhellemont, Carsten Brockmann, Carole Lebreton, and Hans G. Bonekamp
Ocean Sci., 12, 703–713, https://doi.org/10.5194/os-12-703-2016, https://doi.org/10.5194/os-12-703-2016, 2016
Short summary
Short summary
Copernicus operational services include ocean colour applications from medium-resolution polar-orbiting satellite sensors. The goal is to satisfy EU reporting on the quality of marine, coastal and inland waters, as well as to support climate, fisheries, environmental monitoring, and sediment transport applications. Ocean colour data from polar platforms, however, suffer from fractional coverage. This effort is in developing water turbidity services from Meteosat geostationary instruments.
Related subject area
Biogeosciences
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)
Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA r7236) and evaluation at the Caxiuanã drought experiment
Matrix representation of lateral soil movements: scaling and calibrating CE-DYNAM (v2) at a continental level
CANOPS-GRB v1.0: a new Earth system model for simulating the evolution of ocean–atmosphere chemistry over geologic timescales
Low sensitivity of three terrestrial biosphere models to soil texture over the South American tropics
FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling
Impact of changes in climate and CO2 on the carbon storage potential of vegetation under limited water availability using SEIB-DGVM version 3.02
FORCCHN V2.0: an individual-based model for predicting multiscale forest carbon dynamics
Climate and parameter sensitivity and induced uncertainties in carbon stock projections for European forests (using LPJ-GUESS 4.0)
Use of genetic algorithms for ocean model parameter optimisation: a case study using PISCES-v2_RC for North Atlantic particulate organic carbon
SurEau-Ecos v2.0: a trait-based plant hydraulics model for simulations of plant water status and drought-induced mortality at the ecosystem level
Improved representation of plant physiology in the JULES-vn5.6 land surface model: photosynthesis, stomatal conductance and thermal acclimation
Representation of the phosphorus cycle in the Joint UK Land Environment Simulator (vn5.5_JULES-CNP)
CLM5-FruitTree: a new sub-model for deciduous fruit trees in the Community Land Model (CLM5)
The impact of hurricane disturbances on a tropical forest: implementing a palm plant functional type and hurricane disturbance module in ED2-HuDi V1.0
A validation standard for area of habitat maps for terrestrial birds and mammals
Soil Cycles of Elements simulator for Predicting TERrestrial regulation of greenhouse gases: SCEPTER v0.9
FABM-NflexPD 2.0: Testing an Instantaneous Acclimation Approach for Modelling the Implications of Phytoplankton Eco-physiology for the Carbon and Nutrient cycles
Using terrestrial laser scanning to constrain forest ecosystem structure and functions in the Ecosystem Demography model (ED2.2)
A map of global peatland extent created using machine learning (Peat-ML)
Implementation and evaluation of the unified stomatal optimization approach in the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
ECOSMO II(CHL): a marine biogeochemical model for the North Atlantic and the Arctic
Water Ecosystems Tool (WET) 1.0 – a new generation of flexible aquatic ecosystem model
Development of an open-source regional data assimilation system in PEcAn v. 1.7.2: application to carbon cycle reanalysis across the contiguous US using SIPNET
Predicting global terrestrial biomes with the LeNet convolutional neural network
KGML-ag: a modeling framework of knowledge-guided machine learning to simulate agroecosystems: a case study of estimating N2O emission using data from mesocosm experiments
Assessing methane emissions for northern peatlands in ORCHIDEE-PEAT revision 7020
A dynamic local-scale vegetation model for lycopsids (LYCOm v1.0)
Soil-related developments of the Biome-BGCMuSo v6.2 terrestrial ecosystem model
Global evaluation of the Ecosystem Demography model (ED v3.0)
A new snow module improves predictions of the isotope-enabled MAIDENiso forest growth model
Calibrating the soil organic carbon model Yasso20 with multiple datasets
The PFLOTRAN Reaction Sandbox
A new approach to simulate peat accumulation, degradation and stability in a global land surface scheme (JULES vn5.8_accumulate_soil) for northern and temperate peatlands
Definitions and methods to estimate regional land carbon fluxes for the second phase of the REgional Carbon Cycle Assessment and Processes Project (RECCAP-2)
Locating trees to mitigate outdoor radiant load of humans in urban areas using a metaheuristic hill-climbing algorithm – introducing TreePlanter v1.0
Sensitivity of asymmetric oxygen minimum zones to mixing intensity and stoichiometry in the tropical Pacific using a basin-scale model (OGCM-DMEC V1.4)
The importance of turbulent ocean–sea ice nutrient exchanges for simulation of ice algal biomass and production with CICE6.1 and Icepack 1.2
Modeling symbiotic biological nitrogen fixation in grain legumes globally with LPJ-GUESS (v4.0, r10285)
Afforestation impact on soil temperature in regional climate model simulations over Europe
BioRT-Flux-PIHM v1.0: a biogeochemical reactive transport model at the watershed scale
Modeling the short-term fire effects on vegetation dynamics and surface energy in southern Africa using the improved SSiB4/TRIFFID-Fire model
Explicit silicate cycling in the Kiel Marine Biogeochemistry Model version 3 (KMBM3) embedded in the UVic ESCM version 2.9
Performance analysis of regional AquaCrop (v6.1) biomass and surface soil moisture simulations using satellite and in situ observations
OMEN-SED(-RCM) (v1.1): a pseudo-reactive continuum representation of organic matter degradation dynamics for OMEN-SED
Testing stomatal models at the stand level in deciduous angiosperm and evergreen gymnosperm forests using CliMA Land (v0.1)
Comparing an exponential respiration model to alternative models for soil respiration components in a Canadian wildfire chronosequence (FireResp v1.0)
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
Short summary
Short summary
Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
Short summary
Short summary
We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
Short summary
Short summary
To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
Short summary
Short summary
Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
Short summary
Short summary
A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Félicien Meunier, Wim Verbruggen, Hans Verbeeck, and Marc Peaucelle
Geosci. Model Dev., 15, 7573–7591, https://doi.org/10.5194/gmd-15-7573-2022, https://doi.org/10.5194/gmd-15-7573-2022, 2022
Short summary
Short summary
Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
Short summary
Short summary
The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
Short summary
Short summary
Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Jing Fang, Herman H. Shugart, Feng Liu, Xiaodong Yan, Yunkun Song, and Fucheng Lv
Geosci. Model Dev., 15, 6863–6872, https://doi.org/10.5194/gmd-15-6863-2022, https://doi.org/10.5194/gmd-15-6863-2022, 2022
Short summary
Short summary
Our study provided a detailed description and a package of an individual tree-based carbon model, FORCCHN2. This model used non-structural carbohydrate (NSC) pools to couple tree growth and phenology. The model could reproduce daily carbon fluxes across Northern Hemisphere forests. Given the potential importance of the application of this model, there is substantial scope for using FORCCHN2 in fields as diverse as forest ecology, climate change, and carbon estimation.
Johannes Oberpriller, Christine Herschlein, Peter Anthoni, Almut Arneth, Andreas Krause, Anja Rammig, Mats Lindeskog, Stefan Olin, and Florian Hartig
Geosci. Model Dev., 15, 6495–6519, https://doi.org/10.5194/gmd-15-6495-2022, https://doi.org/10.5194/gmd-15-6495-2022, 2022
Short summary
Short summary
Understanding uncertainties of projected ecosystem dynamics under environmental change is of immense value for research and climate change policy. Here, we analyzed these across European forests. We find that uncertainties are dominantly induced by parameters related to water, mortality, and climate, with an increasing importance of climate from north to south. These results highlight that climate not only contributes uncertainty but also modifies uncertainties in other ecosystem processes.
Marcus Falls, Raffaele Bernardello, Miguel Castrillo, Mario Acosta, Joan Llort, and Martí Galí
Geosci. Model Dev., 15, 5713–5737, https://doi.org/10.5194/gmd-15-5713-2022, https://doi.org/10.5194/gmd-15-5713-2022, 2022
Short summary
Short summary
This paper describes and tests a method which uses a genetic algorithm (GA), a type of optimisation algorithm, on an ocean biogeochemical model. The aim is to produce a set of numerical parameters that best reflect the observed data of particulate organic carbon in a specific region of the ocean. We show that the GA can provide optimised model parameters in a robust and efficient manner and can also help detect model limitations, ultimately leading to a reduction in the model uncertainties.
Julien Ruffault, François Pimont, Hervé Cochard, Jean-Luc Dupuy, and Nicolas Martin-StPaul
Geosci. Model Dev., 15, 5593–5626, https://doi.org/10.5194/gmd-15-5593-2022, https://doi.org/10.5194/gmd-15-5593-2022, 2022
Short summary
Short summary
A widespread increase in tree mortality has been observed around the globe, and this trend is likely to continue because of ongoing climate change. Here we present SurEau-Ecos, a trait-based plant hydraulic model to predict tree desiccation and mortality. SurEau-Ecos can help determine the areas and ecosystems that are most vulnerable to drying conditions.
Rebecca J. Oliver, Lina M. Mercado, Doug B. Clark, Chris Huntingford, Christopher M. Taylor, Pier Luigi Vidale, Patrick C. McGuire, Markus Todt, Sonja Folwell, Valiyaveetil Shamsudheen Semeena, and Belinda E. Medlyn
Geosci. Model Dev., 15, 5567–5592, https://doi.org/10.5194/gmd-15-5567-2022, https://doi.org/10.5194/gmd-15-5567-2022, 2022
Short summary
Short summary
We introduce new representations of plant physiological processes into a land surface model. Including new biological understanding improves modelled carbon and water fluxes for the present in tropical and northern-latitude forests. Future climate simulations demonstrate the sensitivity of photosynthesis to temperature is important for modelling carbon cycle dynamics in a warming world. Accurate representation of these processes in models is necessary for robust predictions of climate change.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
Short summary
Short summary
In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Olga Dombrowski, Cosimo Brogi, Harrie-Jan Hendricks Franssen, Damiano Zanotelli, and Heye Bogena
Geosci. Model Dev., 15, 5167–5193, https://doi.org/10.5194/gmd-15-5167-2022, https://doi.org/10.5194/gmd-15-5167-2022, 2022
Short summary
Short summary
Soil carbon storage and food production of fruit orchards will be influenced by climate change. However, they lack representation in models that study such processes. We developed and tested a new sub-model, CLM5-FruitTree, that describes growth, biomass distribution, and management practices in orchards. The model satisfactorily predicted yield and exchange of carbon, energy, and water in an apple orchard and can be used to study land surface processes in fruit orchards at different scales.
Jiaying Zhang, Rafael L. Bras, Marcos Longo, and Tamara Heartsill Scalley
Geosci. Model Dev., 15, 5107–5126, https://doi.org/10.5194/gmd-15-5107-2022, https://doi.org/10.5194/gmd-15-5107-2022, 2022
Short summary
Short summary
We implemented hurricane disturbance in a vegetation dynamics model and calibrated the model with observations of a tropical forest. We used the model to study forest recovery from hurricane disturbance and found that a single hurricane disturbance enhances AGB and BA in the long term compared with a no-hurricane situation. The model developed and results presented in this study can be utilized to understand the impact of hurricane disturbances on forest recovery under the changing climate.
Prabhat Raj Dahal, Maria Lumbierres, Stuart H. M. Butchart, Paul F. Donald, and Carlo Rondinini
Geosci. Model Dev., 15, 5093–5105, https://doi.org/10.5194/gmd-15-5093-2022, https://doi.org/10.5194/gmd-15-5093-2022, 2022
Short summary
Short summary
This paper describes the validation of area of habitat (AOH) maps produced for terrestrial birds and mammals. The main objective was to assess the accuracy of the maps based on independent data. We used open access data from repositories, such as ebird and gbif to check if our maps were a better reflection of species' distribution than random. When points were not available we used logistic models to validate the AOH maps. The majority of AOH maps were found to have a high accuracy.
Yoshiki Kanzaki, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 15, 4959–4990, https://doi.org/10.5194/gmd-15-4959-2022, https://doi.org/10.5194/gmd-15-4959-2022, 2022
Short summary
Short summary
Increasing carbon dioxide in the atmosphere is an urgent issue in the coming century. Enhanced rock weathering in soils can be one of the most efficient C capture strategies. On the basis as a weathering simulator, the newly developed SCEPTER model implements bio-mixing by fauna/humans and enables organic matter and crushed rocks/minerals at the soil surface with an option to track their particle size distributions. Those features can be useful for evaluating the carbon capture efficiency.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
EGUsphere, https://doi.org/10.5194/egusphere-2022-493, https://doi.org/10.5194/egusphere-2022-493, 2022
Short summary
Short summary
In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an 'instantaneous acclimation' approach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
Short summary
Short summary
We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Joe R. Melton, Ed Chan, Koreen Millard, Matthew Fortier, R. Scott Winton, Javier M. Martín-López, Hinsby Cadillo-Quiroz, Darren Kidd, and Louis V. Verchot
Geosci. Model Dev., 15, 4709–4738, https://doi.org/10.5194/gmd-15-4709-2022, https://doi.org/10.5194/gmd-15-4709-2022, 2022
Short summary
Short summary
Peat-ML is a high-resolution global peatland extent map generated using machine learning techniques. Peatlands are important in the global carbon and water cycles, but their extent is poorly known. We generated Peat-ML using drivers of peatland formation including climate, soil, geomorphology, and vegetation data, and we train the model with regional peatland maps. Our accuracy estimation approaches suggest Peat-ML is of similar or higher quality than other available peatland mapping products.
Qianyu Li, Shawn P. Serbin, Julien Lamour, Kenneth J. Davidson, Kim S. Ely, and Alistair Rogers
Geosci. Model Dev., 15, 4313–4329, https://doi.org/10.5194/gmd-15-4313-2022, https://doi.org/10.5194/gmd-15-4313-2022, 2022
Short summary
Short summary
Stomatal conductance is the rate of water release from leaves’ pores. We implemented an optimal stomatal conductance model in a vegetation model. We then tested and compared it with the existing empirical model in terms of model responses to key environmental variables. We also evaluated the model with measurements at a tropical forest site. Our study suggests that the parameterization of conductance models and current model response to drought are the critical areas for improving models.
Veli Çağlar Yumruktepe, Annette Samuelsen, and Ute Daewel
Geosci. Model Dev., 15, 3901–3921, https://doi.org/10.5194/gmd-15-3901-2022, https://doi.org/10.5194/gmd-15-3901-2022, 2022
Short summary
Short summary
We describe the coupled bio-physical model ECOSMO II(CHL), which is used for regional configurations for the North Atlantic and the Arctic hind-casting and operational purposes. The model is consistent with the large-scale climatological nutrient settings and is capable of representing regional and seasonal changes, and model primary production agrees with previous measurements. For the users of this model, this paper provides the underlying science, model evaluation and its development.
Nicolas Azaña Schnedler-Meyer, Tobias Kuhlmann Andersen, Fenjuan Rose Schmidt Hu, Karsten Bolding, Anders Nielsen, and Dennis Trolle
Geosci. Model Dev., 15, 3861–3878, https://doi.org/10.5194/gmd-15-3861-2022, https://doi.org/10.5194/gmd-15-3861-2022, 2022
Short summary
Short summary
We present the Water Ecosystems Tool (WET) – a new modular aquatic ecosystem model configurable to a wide array of physical setups, ecosystems and research questions based on the popular FABM–PCLake model. We aim for the model to become a community staple, thus helping to consolidate the state of the art under a few flexible models, with the aim of improving comparability across studies and preventing the
re-inventions of the wheelthat are common to our scientific modeling community.
Hamze Dokoohaki, Bailey D. Morrison, Ann Raiho, Shawn P. Serbin, Katie Zarada, Luke Dramko, and Michael Dietze
Geosci. Model Dev., 15, 3233–3252, https://doi.org/10.5194/gmd-15-3233-2022, https://doi.org/10.5194/gmd-15-3233-2022, 2022
Short summary
Short summary
We present a new terrestrial carbon cycle data assimilation system, built on the PEcAn model–data eco-informatics system, and its application for the development of a proof-of-concept carbon
reanalysisproduct that harmonizes carbon pools (leaf, wood, soil) and fluxes (GPP, Ra, Rh, NEE) across the contiguous United States from 1986–2019. Here, we build on a decade of work on uncertainty propagation to generate the most complete and robust uncertainty accounting available to date.
Hisashi Sato and Takeshi Ise
Geosci. Model Dev., 15, 3121–3132, https://doi.org/10.5194/gmd-15-3121-2022, https://doi.org/10.5194/gmd-15-3121-2022, 2022
Short summary
Short summary
Accurately predicting global coverage of terrestrial biome is one of the earliest ecological concerns, and many empirical schemes have been proposed to characterize their relationship. Here, we demonstrate an accurate and practical method to construct empirical models for operational biome mapping via a convolutional neural network (CNN) approach.
Licheng Liu, Shaoming Xu, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, Matthew D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar, and Zhenong Jin
Geosci. Model Dev., 15, 2839–2858, https://doi.org/10.5194/gmd-15-2839-2022, https://doi.org/10.5194/gmd-15-2839-2022, 2022
Short summary
Short summary
By incorporating the domain knowledge into a machine learning model, KGML-ag overcomes the well-known limitations of process-based models due to insufficient representations and constraints, and unlocks the “black box” of machine learning models. Therefore, KGML-ag can outperform existing approaches on capturing the hot moment and complex dynamics of N2O flux. This study will be a critical reference for the new generation of modeling paradigm for biogeochemistry and other geoscience processes.
Elodie Salmon, Fabrice Jégou, Bertrand Guenet, Line Jourdain, Chunjing Qiu, Vladislav Bastrikov, Christophe Guimbaud, Dan Zhu, Philippe Ciais, Philippe Peylin, Sébastien Gogo, Fatima Laggoun-Défarge, Mika Aurela, M. Syndonia Bret-Harte, Jiquan Chen, Bogdan H. Chojnicki, Housen Chu, Colin W. Edgar, Eugenie S. Euskirchen, Lawrence B. Flanagan, Krzysztof Fortuniak, David Holl, Janina Klatt, Olaf Kolle, Natalia Kowalska, Lars Kutzbach, Annalea Lohila, Lutz Merbold, Włodzimierz Pawlak, Torsten Sachs, and Klaudia Ziemblińska
Geosci. Model Dev., 15, 2813–2838, https://doi.org/10.5194/gmd-15-2813-2022, https://doi.org/10.5194/gmd-15-2813-2022, 2022
Short summary
Short summary
A methane model that features methane production and transport by plants, the ebullition process and diffusion in soil, oxidation to CO2, and CH4 fluxes to the atmosphere has been embedded in the ORCHIDEE-PEAT land surface model, which includes an explicit representation of northern peatlands. This model, ORCHIDEE-PCH4, was calibrated and evaluated on 14 peatland sites. Results show that the model is sensitive to temperature and substrate availability over the top 75 cm of soil depth.
Suman Halder, Susanne K. M. Arens, Kai Jensen, Tais W. Dahl, and Philipp Porada
Geosci. Model Dev., 15, 2325–2343, https://doi.org/10.5194/gmd-15-2325-2022, https://doi.org/10.5194/gmd-15-2325-2022, 2022
Short summary
Short summary
A dynamic vegetation model, designed to estimate potential impacts of early vascular vegetation, namely, lycopsids, on the biogeochemical cycle at a local scale. Lycopsid Model (LYCOm) estimates the productivity and physiological properties of lycopsids across a broad climatic range along with natural selection, which is then utilized to adjudge their weathering potential. It lays the foundation for estimation of their impacts during their long evolutionary history starting from the Ordovician.
Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
Short summary
Short summary
Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Lei Ma, George Hurtt, Lesley Ott, Ritvik Sahajpal, Justin Fisk, Rachel Lamb, Hao Tang, Steve Flanagan, Louise Chini, Abhishek Chatterjee, and Joseph Sullivan
Geosci. Model Dev., 15, 1971–1994, https://doi.org/10.5194/gmd-15-1971-2022, https://doi.org/10.5194/gmd-15-1971-2022, 2022
Short summary
Short summary
We present a global version of the Ecosystem Demography (ED) model which can track vegetation 3-D structure and scale up ecological processes from individual vegetation to ecosystem scale. Model evaluation against multiple benchmarking datasets demonstrated the model’s capability to simulate global vegetation dynamics across a range of temporal and spatial scales. With this version, ED has the potential to be linked with remote sensing observations to address key scientific questions.
Ignacio Hermoso de Mendoza, Etienne Boucher, Fabio Gennaretti, Aliénor Lavergne, Robert Field, and Laia Andreu-Hayles
Geosci. Model Dev., 15, 1931–1952, https://doi.org/10.5194/gmd-15-1931-2022, https://doi.org/10.5194/gmd-15-1931-2022, 2022
Short summary
Short summary
We modify the numerical model of forest growth MAIDENiso by explicitly simulating snow. This allows us to use the model in boreal environments, where snow is dominant. We tested the performance of the model before and after adding snow, using it at two Canadian sites to simulate tree-ring isotopes and comparing with local observations. We found that modelling snow improves significantly the simulation of the hydrological cycle, the plausibility of the model and the simulated isotopes.
Toni Viskari, Janne Pusa, Istem Fer, Anna Repo, Julius Vira, and Jari Liski
Geosci. Model Dev., 15, 1735–1752, https://doi.org/10.5194/gmd-15-1735-2022, https://doi.org/10.5194/gmd-15-1735-2022, 2022
Short summary
Short summary
We wanted to examine how the chosen measurement data and calibration process affect soil organic carbon model calibration. In our results we found that there is a benefit in using data from multiple litter-bag decomposition experiments simultaneously, even with the required assumptions. Additionally, due to the amount of noise and uncertainties in the system, more advanced calibration methods should be used to parameterize the models.
Glenn E. Hammond
Geosci. Model Dev., 15, 1659–1676, https://doi.org/10.5194/gmd-15-1659-2022, https://doi.org/10.5194/gmd-15-1659-2022, 2022
Short summary
Short summary
This paper describes a simplified interface for implementing and testing new chemical reactions within the reactive transport simulator PFLOTRAN. The paper describes the interface, providing example code for the interface. The paper includes several chemical reactions implemented through the interface.
Sarah E. Chadburn, Eleanor J. Burke, Angela V. Gallego-Sala, Noah D. Smith, M. Syndonia Bret-Harte, Dan J. Charman, Julia Drewer, Colin W. Edgar, Eugenie S. Euskirchen, Krzysztof Fortuniak, Yao Gao, Mahdi Nakhavali, Włodzimierz Pawlak, Edward A. G. Schuur, and Sebastian Westermann
Geosci. Model Dev., 15, 1633–1657, https://doi.org/10.5194/gmd-15-1633-2022, https://doi.org/10.5194/gmd-15-1633-2022, 2022
Short summary
Short summary
We present a new method to include peatlands in an Earth system model (ESM). Peatlands store huge amounts of carbon that accumulates very slowly but that can be rapidly destabilised, emitting greenhouse gases. Our model captures the dynamic nature of peat by simulating the change in surface height and physical properties of the soil as carbon is added or decomposed. Thus, we model, for the first time in an ESM, peat dynamics and its threshold behaviours that can lead to destabilisation.
Philippe Ciais, Ana Bastos, Frédéric Chevallier, Ronny Lauerwald, Ben Poulter, Josep G. Canadell, Gustaf Hugelius, Robert B. Jackson, Atul Jain, Matthew Jones, Masayuki Kondo, Ingrid T. Luijkx, Prabir K. Patra, Wouter Peters, Julia Pongratz, Ana Maria Roxana Petrescu, Shilong Piao, Chunjing Qiu, Celso Von Randow, Pierre Regnier, Marielle Saunois, Robert Scholes, Anatoly Shvidenko, Hanqin Tian, Hui Yang, Xuhui Wang, and Bo Zheng
Geosci. Model Dev., 15, 1289–1316, https://doi.org/10.5194/gmd-15-1289-2022, https://doi.org/10.5194/gmd-15-1289-2022, 2022
Short summary
Short summary
The second phase of the Regional Carbon Cycle Assessment and Processes (RECCAP) will provide updated quantification and process understanding of CO2, CH4, and N2O emissions and sinks for ten regions of the globe. In this paper, we give definitions, review different methods, and make recommendations for estimating different components of the total land–atmosphere carbon exchange for each region in a consistent and complete approach.
Nils Wallenberg, Fredrik Lindberg, and David Rayner
Geosci. Model Dev., 15, 1107–1128, https://doi.org/10.5194/gmd-15-1107-2022, https://doi.org/10.5194/gmd-15-1107-2022, 2022
Short summary
Short summary
Exposure to solar radiation on clear and warm days can lead to heat stress and thermal discomfort. This can be alleviated by planting trees providing shade in particularly warm areas. Here, we use a model to locate trees and optimize their blocking of solar radiation. Our results show that locations can differ depending, e.g., tree size (juvenile or mature) and number of trees that are positioned simultaneously. The model is available as a tool for accessibility by researchers and others.
Kai Wang, Xiujun Wang, Raghu Murtugudde, Dongxiao Zhang, and Rong-Hua Zhang
Geosci. Model Dev., 15, 1017–1035, https://doi.org/10.5194/gmd-15-1017-2022, https://doi.org/10.5194/gmd-15-1017-2022, 2022
Short summary
Short summary
We use observational data of dissolved oxygen (DO) and organic nitrogen to calibrate a basin-scale model (OGCM-DEMC V1.4) and then evaluate model capacity for simulating mid-depth DO in the tropical Pacific. Sensitivity studies show that enhanced vertical mixing combined with reduced biological consumption performs well in reproducing asymmetric oxygen minimum zones (OMZs). We find that DO is more sensitive to biological processes in the upper OMZs but to physical processes in the lower OMZs.
Pedro Duarte, Philipp Assmy, Karley Campbell, and Arild Sundfjord
Geosci. Model Dev., 15, 841–857, https://doi.org/10.5194/gmd-15-841-2022, https://doi.org/10.5194/gmd-15-841-2022, 2022
Short summary
Short summary
Sea ice modeling is an important part of Earth system models (ESMs). The results of ESMs are used by the Intergovernmental Panel on Climate Change in their reports. In this study we present an improvement to calculate the exchange of nutrients between the ocean and the sea ice. This nutrient exchange is an essential process to keep the ice-associated ecosystem functioning. We found out that previous calculation methods may underestimate the primary production of the ice-associated ecosystem.
Jianyong Ma, Stefan Olin, Peter Anthoni, Sam S. Rabin, Anita D. Bayer, Sylvia S. Nyawira, and Almut Arneth
Geosci. Model Dev., 15, 815–839, https://doi.org/10.5194/gmd-15-815-2022, https://doi.org/10.5194/gmd-15-815-2022, 2022
Short summary
Short summary
The implementation of the biological N fixation process in LPJ-GUESS in this study provides an opportunity to quantify N fixation rates between legumes and to better estimate grain legume production on a global scale. It also helps to predict and detect the potential contribution of N-fixing plants as
green manureto reducing or removing the use of N fertilizer in global agricultural systems, considering different climate conditions, management practices, and land-use change scenarios.
Giannis Sofiadis, Eleni Katragkou, Edouard L. Davin, Diana Rechid, Nathalie de Noblet-Ducoudre, Marcus Breil, Rita M. Cardoso, Peter Hoffmann, Lisa Jach, Ronny Meier, Priscilla A. Mooney, Pedro M. M. Soares, Susanna Strada, Merja H. Tölle, and Kirsten Warrach Sagi
Geosci. Model Dev., 15, 595–616, https://doi.org/10.5194/gmd-15-595-2022, https://doi.org/10.5194/gmd-15-595-2022, 2022
Short summary
Short summary
Afforestation is currently promoted as a greenhouse gas mitigation strategy. In our study, we examine the differences in soil temperature and moisture between grounds covered either by forests or grass. The main conclusion emerged is that forest-covered grounds are cooler but drier than open lands in summer. Therefore, afforestation disrupts the seasonal cycle of soil temperature, which in turn could trigger changes in crucial chemical processes such as soil carbon sequestration.
Wei Zhi, Yuning Shi, Hang Wen, Leila Saberi, Gene-Hua Crystal Ng, Kayalvizhi Sadayappan, Devon Kerins, Bryn Stewart, and Li Li
Geosci. Model Dev., 15, 315–333, https://doi.org/10.5194/gmd-15-315-2022, https://doi.org/10.5194/gmd-15-315-2022, 2022
Short summary
Short summary
Watersheds are the fundamental Earth surface functioning unit that connects the land to aquatic systems. Here we present the recently developed BioRT-Flux-PIHM v1.0, a watershed-scale biogeochemical reactive transport model, to improve our ability to understand and predict solute export and water quality. The model has been verified against the benchmark code CrunchTope and has recently been applied to understand reactive transport processes in multiple watersheds of different conditions.
Huilin Huang, Yongkang Xue, Ye Liu, Fang Li, and Gregory S. Okin
Geosci. Model Dev., 14, 7639–7657, https://doi.org/10.5194/gmd-14-7639-2021, https://doi.org/10.5194/gmd-14-7639-2021, 2021
Short summary
Short summary
This study applies a fire-coupled dynamic vegetation model to quantify fire impact at monthly to annual scales. We find fire reduces grass cover by 4–8 % annually for widespread areas in south African savanna and reduces tree cover by 1 % at the periphery of tropical Congolese rainforest. The grass cover reduction peaks at the beginning of the rainy season, which quickly diminishes before the next fire season. In contrast, the reduction of tree cover is irreversible within one growing season.
Karin Kvale, David P. Keller, Wolfgang Koeve, Katrin J. Meissner, Christopher J. Somes, Wanxuan Yao, and Andreas Oschlies
Geosci. Model Dev., 14, 7255–7285, https://doi.org/10.5194/gmd-14-7255-2021, https://doi.org/10.5194/gmd-14-7255-2021, 2021
Short summary
Short summary
We present a new model of biological marine silicate cycling for the University of Victoria Earth System Climate Model (UVic ESCM). This new model adds diatoms, which are a key aspect of the biological carbon pump, to an existing ecosystem model. Our modifications change how the model responds to warming, with net primary production declining more strongly than in previous versions. Diatoms in particular are simulated to decline with climate warming due to their high nutrient requirements.
Shannon de Roos, Gabriëlle J. M. De Lannoy, and Dirk Raes
Geosci. Model Dev., 14, 7309–7328, https://doi.org/10.5194/gmd-14-7309-2021, https://doi.org/10.5194/gmd-14-7309-2021, 2021
Short summary
Short summary
A spatially distributed version of the field-scale crop model AquaCrop v6.1 was developed for applications at various spatial scales. Multi-year 1 km simulations over central Europe were evaluated against biomass and surface soil moisture products derived from optical and microwave satellite missions, as well as in situ observations of soil moisture. The regional version of the AquaCrop model provides a suitable setup for subsequent satellite-based data assimilation.
Philip Pika, Dominik Hülse, and Sandra Arndt
Geosci. Model Dev., 14, 7155–7174, https://doi.org/10.5194/gmd-14-7155-2021, https://doi.org/10.5194/gmd-14-7155-2021, 2021
Short summary
Short summary
OMEN-SED is a model for early diagenesis in marine sediments simulating organic matter (OM) degradation and nutrient dynamics. We replaced the original description with a more realistic one accounting for the widely observed decrease in OM reactivity. The new model reproduces pore water profiles and sediment–water interface fluxes across different environments. This functionality extends the model’s applicability to a broad range of environments and timescales while requiring fewer parameters.
Yujie Wang, Philipp Köhler, Liyin He, Russell Doughty, Renato K. Braghiere, Jeffrey D. Wood, and Christian Frankenberg
Geosci. Model Dev., 14, 6741–6763, https://doi.org/10.5194/gmd-14-6741-2021, https://doi.org/10.5194/gmd-14-6741-2021, 2021
Short summary
Short summary
We present the first step in testing a new land model as part of a new Earth system model. Our model links plant hydraulics, stomatal optimization theory, and a comprehensive canopy radiation scheme. We compared model-predicted carbon and water fluxes to flux tower observations and model-predicted sun-induced chlorophyll fluorescence to satellite retrievals. Our model quantitatively predicted the carbon and water fluxes as well as the canopy fluorescence yield.
John Zobitz, Heidi Aaltonen, Xuan Zhou, Frank Berninger, Jukka Pumpanen, and Kajar Köster
Geosci. Model Dev., 14, 6605–6622, https://doi.org/10.5194/gmd-14-6605-2021, https://doi.org/10.5194/gmd-14-6605-2021, 2021
Short summary
Short summary
Forest fires heavily affect carbon stocks and fluxes of carbon in high-latitude forests. Long-term trends in soil respiration following forest fires are associated with recovery of aboveground biomass. We evaluated models for soil autotrophic and heterotrophic respiration with data from a chronosequence of stand-replacing forest fires in northern Canada. The best model that reproduced expected patterns in soil respiration components takes into account soil microbe carbon as a model variable.
Cited articles
Asmala, E., Autio, R., Kaartokallio, H., Pitkänen, L., Stedmon, C. A., and Thomas, D. N.: Bioavailability of riverine dissolved organic matter in three Baltic Sea estuaries and the effect of catchment land use, Biogeosciences, 10, 6969–6986, https://doi.org/10.5194/bg-10-6969-2013, 2013. a
Attila, J., Koponen, S., Kallio, K., Lindfors, A., Kaitala, S., and Ylöstalo, P.: MERIS Case II water processor comparison on coastal sites of the northern Baltic Sea, Remote Sens. Environ., 128, 138–149, https://doi.org/10.1016/j.rse.2012.07.009, 2013. a
Brockmann, C., Doerffer, R.,
Peters, M., Stelzer, K., Embacher, S., and Ruescas, A.: Evolution of the C2RCC
neural network for Sentinel 2 and 3 for the retrieval of ocean colour products
in normal and extreme optically complex waters, website, available at: http://step.esa.int/docs/extra/Evolution%20of%20the%20C2RCC_LPS16.pdf (last access: 7 July 2020), 2016. a
Cahill, B., Schofield, O., Chant, R., Wilkin, J., Hunter, E., Glenn, S., and Bissett, P.: Dynamics of turbid buoyant plumes and the feedbacks on near-shore biogeochemistry and physics, Geophys. Res. Lett., 35, L10605, https://doi.org/10.1029/2008GL033595, 2008. a
Dutkiewicz, S., Hickman, A. E., Jahn, O., Gregg, W. W., Mouw, C. B., and Follows, M. J.: Capturing optically important constituents and properties in a marine biogeochemical and ecosystem model, Biogeosciences, 12, 4447–4481, https://doi.org/10.5194/bg-12-4447-2015, 2015. a, b, c
Geyer, B. and
Rockel, B.: coastDat-2 COSMO-CLM Atmospheric Reconstruction, World Data Center for Climate (WDCC) at DKRZ,
https://doi.org/10.1594/WDCC/coastDat-2_COSMO-CLM, 2013. a
Gnanadesikan, A., Kim, G. E., and Pradal, M.-A. S.: Impact of Colored Dissolved Materials on the Annual Cycle of Sea Surface Temperature: Potential Implications for Extreme Ocean Temperatures, Geophys. Res. Lett., 46, 861–869, https://doi.org/10.1029/2018GL080695, 2019. a
Gustafsson, B. G., Schenk, F., Blenckner, T., Eilola, K., Meier, H. E. M., Müller-Karulis, B., Neumann, T., Ruoho-Airola, T., Savchuk, O. P., and Zorita, E.: Reconstructing the Development of Baltic Sea Eutrophication 1850–2006, AMBIO, 41, 534–548, https://doi.org/10.1007/s13280-012-0318-x, G02023, 2012. a
Harvey, E. T., Kratzer, S., and Andersson, A.: Relationships between colored dissolved organic matter and dissolved organic carbon in different coastal gradients of the Baltic Sea, AMBIO, 44, 392–401, https://doi.org/10.1007/s13280-015-0658-4, 2015. a, b
Jerlov, N. (Eds.): Marine Optics, vol. 14
of Elsevier Oceanography Series, Elsevier,
https://doi.org/10.1016/S0422-9894(08)70789-X, 1976. a
Jolliff, J. K. and Smith, T. A.: Biological modulation of upper ocean physics: Simulating the biothermal feedback effect in Monterey Bay, California, J. Geophys. Res.-Biogeo., 119, 703–721, https://doi.org/10.1002/2013JG002522, 2014. a
Koponen, S., Attila, J., Pulliainen, J., Kallio, K., Pyhälahti, T., Lindfors, A., Rasmus, K., and Hallikainen, M.: A case study of airborne and satellite remote sensing of a spring bloom event in the Gulf of Finland, Cont. Shelf Res., 27, 228–244, https://doi.org/10.1016/j.csr.2006.10.006, 2007. a
Kowalczuk, P., Stedmon, C. A., and Markager, S.: Modeling absorption by CDOM in the Baltic Sea from season, salinity and chlorophyll, Mar. Chem., 101, 1–11, https://doi.org/10.1016/j.marchem.2005.12.005, 2006. a, b
Kowalczuk, P., Zabłocka, M., Sagan, S., and Kuliński, K.: Fluorescence measured in situ as a proxy of CDOM absorption and DOC concentration in the Baltic Sea, Oceanologia, 52, 431–471, 2010. a
Kratzer, S. and Moore, G.: Inherent Optical Properties of the Baltic Sea in Comparison to Other Seas and Oceans, Remote Sens.-Basel, 10, 418, https://doi.org/10.3390/rs10030418, 2018. a
Kuznetsov, I. and Neumann, T.: Simulation of carbon dynamics in the Baltic Sea with a 3D model, J. Marine Syst., 111–112, 167–174, https://doi.org/10.1016/j.jmarsys.2012.10.011, 2013. a
Leibniz
Institute for Baltic Sea Research: ERGOM: Ecological ReGional Ocean Model,
available at: http://www.ergom.net (last access: 27 July 2020), 2015. a
Lindfors, A., Rasmus, K., and Strömbeck, N.: Point or pointless – quality of ground data, Int. Remote Sens., 26, 415–423, https://doi.org/10.1080/01431160410001720261, 2005. a
Moran, M. A., Sheldon Jr., W. M., and Zepp, R. G.: Carbon loss and optical property changes during long-term photochemical and biological degradation of estuarine dissolved organic matter, Limnol. Oceanogr., 45, 1254–1264, https://doi.org/10.4319/lo.2000.45.6.1254, 2000. a, b
Nelson, N. B. and Siegel, D. A.: Chapter 11 – Chromophoric DOM in the Open Ocean, in: Biogeochemistry of Marine Dissolved Organic Matter, edited by: Hansell, D. A. and Carlson, C. A., pp. 547–578, Academic Press, San Diego, https://doi.org/10.1016/B978-012323841-2/50013-0, 2002. a, b
Neumann, T.: Climate-change effects on the Baltic Sea ecosystem: A model study, J. Marine Syst., 81, 213–224, https://doi.org/10.1016/j.jmarsys.2009.12.001, 2010. a
Neumann, T.: Model code and boundary data for “Radiation model for the Baltic Sea with an explicit CDOM state variable: a case study with Model ERGOM (version 1.2)” paper [code], Zenodo, https://doi.org/10.5281/zenodo.4299873, 2020. a
Neumann, T.: BONUS+ SeaLaBio Model Experiments [data set], available at: https://thredds-iow.io-warnemuende.de/thredds/catalogs/projects/SeaLaBio/catalog_sealabio.html, last access: 6 August 2021. a
Neumann, T., Siegel, H., Moros, M., Gerth, M., Kniebusch, M., and Heydebreck, D.: Ventilation of the northern Baltic Sea, Ocean Sci., 16, 767–780, https://doi.org/10.5194/os-16-767-2020, 2020.
a
Pefanis, V., Losa, S. N., Losch, M., Janout, M. A., and Bracher, A.: Amplified Arctic Surface Warming and Sea Ice Loss Due to Phytoplankton and Colored Dissolved Material, Geophys. Res. Lett., 47, e2020GL088795, https://doi.org/10.1029/2020GL088795, 2020. a
Radtke, H., Lipka, M., Bunke, D., Morys, C., Woelfel, J., Cahill, B., Böttcher, M. E., Forster, S., Leipe, T., Rehder, G., and Neumann, T.: Ecological ReGional Ocean Model with vertically resolved sediments (ERGOM SED 1.0): coupling benthic and pelagic biogeochemistry of the south-western Baltic Sea, Geosci. Model Dev., 12, 275–320, https://doi.org/10.5194/gmd-12-275-2019, 2019. a
Skoog, A., Wedborg, M., and Fogelqvist, E.: Decoupling of total organic carbon concentrations and humic substance fluorescence in a an extended temperate estuary, Mar. Chem., 124, 68–77, https://doi.org/10.1016/j.marchem.2010.12.003, 2011. a, b
Stedmon, C. and Markager, S.: Behaviour of the optical properties of coloured dissolved organic matter under conservative mixing, Estuarine, Coastal and Shelf Science, 57, 973–979, https://doi.org/10.1016/S0272-7714(03)00003-9, 2003. a
Stedmon, C. A., Osburn, C. L., and
Kragh, T.: Tracing water mass mixing in the Baltic–North Sea transition zone
using the optical properties of coloured dissolved organic matter, Estuar.
Coast. Shelf S., 87, 156–162, https://doi.org/10.1016/j.ecss.2009.12.022, 2010. a
Stigebrandt, A. and Wulff, F.: A model for the dynamics of nutrients and oxygen in the Baltic proper, J. Mar. Res., 45, 729–759, 1987. a
Väkevä, S., Kallio, K., Koponen, S., Neumann, T., Attila, J., Brockmann, C., Kervinen, M., Mazeran, C., Müller, D., Philipson, P., Thulin, S., and Ylöstalo, P.: Baltic SeaLaBio Web Accessible Folder [data set], available at: http://eo.ymparisto.fi/data/water/Baltic_SeaLaBio/, last access: 6 August 2021a. a
Väkevä, S., Koponen, S., Kervinen, M., Neumann, T., Attila, J., Brockmann, C., Kallio, K., Mazeran, C., Müller, D., Philipson, P., Thulin, S., and Ylöstalo, P.: Baltic SeaLaBio CDOM input to ERGOM [data set], available at: http://eo.ymparisto.fi/data/water/Baltic_SeaLaBio/CDOM_input_to_ERGOM/, last access: 6 August, 2021b. a
Winton, M.: A Reformulated Three-Layer Sea Ice Model, J. Atmos. Ocean. Tech., 17, 525–531, https://doi.org/10.1175/1520-0426(2000)017<0525:ARTLSI>2.0.CO;2, 2000. a
Short summary
The Baltic Sea is heavily impacted by surrounding land. Therefore, the concentration of colored dissolved organic matter (CDOM) of terrestrial origin is relatively high and impacts the light penetration depth. Estimating a correct light climate is essential for ecosystem models. In this study, a method is developed to derive riverine CDOM from Earth observation methods. The data are used as boundary conditions for an ecosystem model, and the advantage over former approaches is shown.
The Baltic Sea is heavily impacted by surrounding land. Therefore, the concentration of colored...
