Articles | Volume 13, issue 9
https://doi.org/10.5194/gmd-13-4413-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-4413-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
22 Sep 2020
Model description paper |
| 22 Sep 2020
| 22 Sep 2020
Stoichiometrically coupled carbon and nitrogen cycling in the MIcrobial-MIneral Carbon Stabilization model version 1.0 (MIMICS-CN v1.0)
Emily Kyker-Snowman
CORRESPONDING AUTHOR
Department of Natural Resources and the Environment, University of New
Hampshire, Durham, NH 03824, USA
William R. Wieder
Climate and Global Dynamics Laboratory, National Center for
Atmospheric Research, Boulder, CO 80305, USA
Institute of Arctic and Alpine Research, University of Colorado Boulder,
Boulder, CO 80309, USA
Serita D. Frey
Department of Natural Resources and the Environment, University of New
Hampshire, Durham, NH 03824, USA
A. Stuart Grandy
Department of Natural Resources and the Environment, University of New
Hampshire, Durham, NH 03824, USA
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Cited
22 citations as recorded by crossref.
- Ecosystem consequences of introducing plant growth promoting rhizobacteria to managed systems and potential legacy effects J. Moore et al. 10.1111/nph.18010
- Microbial Necromass in Soils—Linking Microbes to Soil Processes and Carbon Turnover M. Kästner et al. 10.3389/fenvs.2021.756378
- Calibrating the soil organic carbon model Yasso20 with multiple datasets T. Viskari et al. 10.5194/gmd-15-1735-2022
- Ecological stoichiometry as a foundation for omics-enabled biogeochemical models of soil organic matter decomposition E. Graham & K. Hofmockel 10.1007/s10533-021-00851-2
- Increasing the spatial and temporal impact of ecological research: A roadmap for integrating a novel terrestrial process into an Earth system model E. Kyker‐Snowman et al. 10.1111/gcb.15894
- Reparameterization Required After Model Structure Changes From Carbon Only to Carbon‐Nitrogen Coupling S. Wang et al. 10.1029/2021MS002798
- Short-Term Mineralization of Belowground Biomass of Perennial Biomass Crops after Reversion to Arable Land A. Ferrarini et al. 10.3390/agronomy12020485
- Microbial Models for Simulating Soil Carbon Dynamics: A Review A. Chandel et al. 10.1029/2023JG007436
- Endophytic bacterium Bacillus cereus affects host litter decomposition by regulating soil microbial structure and phosphate mineralization H. Hu et al. 10.1016/j.apsoil.2023.105092
- Substantial uncertainties in global soil organic carbon simulated by multiple terrestrial carbon cycle models Z. Wang et al. 10.1002/ldr.4679
- Tree diversity and soil chemical properties drive the linkages between soil microbial community and ecosystem functioning R. Beugnon et al. 10.1038/s43705-021-00040-0
- Global Simulation and Evaluation of Soil Organic Matter and Microbial Carbon and Nitrogen Stocks Using the Microbial Decomposition Model ORCHIMIC v2.0 Y. Huang et al. 10.1029/2020GB006836
- Ecological modelling approaches for predicting emergent properties in microbial communities N. van den Berg et al. 10.1038/s41559-022-01746-7
- BODIUM—A systemic approach to model the dynamics of soil functions S. König et al. 10.1111/ejss.13411
- Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model Y. Zhang et al. 10.5194/bg-18-3147-2021
- Soil enzymes as indicators of soil function: A step toward greater realism in microbial ecological modeling G. Wang et al. 10.1111/gcb.16036
- Identifying Data Needed to Reduce Parameter Uncertainty in a Coupled Microbial Soil C and N Decomposition Model M. Saifuddin et al. 10.1029/2021JG006593
- SoDaH: the SOils DAta Harmonization database, an open-source synthesis of soil data from research networks, version 1.0 W. Wieder et al. 10.5194/essd-13-1843-2021
- Sporadic P limitation constrains microbial growth and facilitates SOM accumulation in the stoichiometrically coupled, acclimating microbe–plant–soil model G. Pold et al. 10.1016/j.soilbio.2021.108489
- A holistic framework integrating plant-microbe-mineral regulation of soil bioavailable nitrogen A. Daly et al. 10.1007/s10533-021-00793-9
- Preferential substrate use decreases priming effects in contrasting treeline soils J. Michel et al. 10.1007/s10533-022-00996-8
- Optimizing process-based models to predict current and future soil organic carbon stocks at high-resolution D. Pierson et al. 10.1038/s41598-022-14224-8
19 citations as recorded by crossref.
- Ecosystem consequences of introducing plant growth promoting rhizobacteria to managed systems and potential legacy effects J. Moore et al. 10.1111/nph.18010
- Microbial Necromass in Soils—Linking Microbes to Soil Processes and Carbon Turnover M. Kästner et al. 10.3389/fenvs.2021.756378
- Calibrating the soil organic carbon model Yasso20 with multiple datasets T. Viskari et al. 10.5194/gmd-15-1735-2022
- Ecological stoichiometry as a foundation for omics-enabled biogeochemical models of soil organic matter decomposition E. Graham & K. Hofmockel 10.1007/s10533-021-00851-2
- Increasing the spatial and temporal impact of ecological research: A roadmap for integrating a novel terrestrial process into an Earth system model E. Kyker‐Snowman et al. 10.1111/gcb.15894
- Reparameterization Required After Model Structure Changes From Carbon Only to Carbon‐Nitrogen Coupling S. Wang et al. 10.1029/2021MS002798
- Short-Term Mineralization of Belowground Biomass of Perennial Biomass Crops after Reversion to Arable Land A. Ferrarini et al. 10.3390/agronomy12020485
- Microbial Models for Simulating Soil Carbon Dynamics: A Review A. Chandel et al. 10.1029/2023JG007436
- Endophytic bacterium Bacillus cereus affects host litter decomposition by regulating soil microbial structure and phosphate mineralization H. Hu et al. 10.1016/j.apsoil.2023.105092
- Substantial uncertainties in global soil organic carbon simulated by multiple terrestrial carbon cycle models Z. Wang et al. 10.1002/ldr.4679
- Tree diversity and soil chemical properties drive the linkages between soil microbial community and ecosystem functioning R. Beugnon et al. 10.1038/s43705-021-00040-0
- Global Simulation and Evaluation of Soil Organic Matter and Microbial Carbon and Nitrogen Stocks Using the Microbial Decomposition Model ORCHIMIC v2.0 Y. Huang et al. 10.1029/2020GB006836
- Ecological modelling approaches for predicting emergent properties in microbial communities N. van den Berg et al. 10.1038/s41559-022-01746-7
- BODIUM—A systemic approach to model the dynamics of soil functions S. König et al. 10.1111/ejss.13411
- Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model Y. Zhang et al. 10.5194/bg-18-3147-2021
- Soil enzymes as indicators of soil function: A step toward greater realism in microbial ecological modeling G. Wang et al. 10.1111/gcb.16036
- Identifying Data Needed to Reduce Parameter Uncertainty in a Coupled Microbial Soil C and N Decomposition Model M. Saifuddin et al. 10.1029/2021JG006593
- SoDaH: the SOils DAta Harmonization database, an open-source synthesis of soil data from research networks, version 1.0 W. Wieder et al. 10.5194/essd-13-1843-2021
- Sporadic P limitation constrains microbial growth and facilitates SOM accumulation in the stoichiometrically coupled, acclimating microbe–plant–soil model G. Pold et al. 10.1016/j.soilbio.2021.108489
3 citations as recorded by crossref.
- A holistic framework integrating plant-microbe-mineral regulation of soil bioavailable nitrogen A. Daly et al. 10.1007/s10533-021-00793-9
- Preferential substrate use decreases priming effects in contrasting treeline soils J. Michel et al. 10.1007/s10533-022-00996-8
- Optimizing process-based models to predict current and future soil organic carbon stocks at high-resolution D. Pierson et al. 10.1038/s41598-022-14224-8
Latest update: 27 Nov 2023
Short summary
Microbes drive carbon (C) and nitrogen (N) transformations in soil, and soil models have started to include explicit microbial physiology and functioning to try to reduce uncertainty in soil–climate feedbacks. Here, we add N cycling to a microbially explicit soil C model and reproduce C and N dynamics in soil during litter decomposition across a range of sites. We discuss model-generated hypotheses about soil C and N cycling and highlight the need for landscape-scale model evaluation data.
Microbes drive carbon (C) and nitrogen (N) transformations in soil, and soil models have started...
