Articles | Volume 13, issue 3
https://doi.org/10.5194/gmd-13-1399-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-1399-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Dynamic upscaling of decomposition kinetics for carbon cycling models
Arjun Chakrawal
CORRESPONDING AUTHOR
Department of Physical Geography, Stockholm University, Svante Arrhenius väg 8C, Frescati, 106 91 Stockholm, Sweden
Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
Anke M. Herrmann
Department of Soil & Environment, Swedish University of Agricultural Sciences, P.O. Box 7014, 75007 Uppsala, Sweden
John Koestel
Department of Soil & Environment, Swedish University of Agricultural Sciences, P.O. Box 7014, 75007 Uppsala, Sweden
Jerker Jarsjö
Department of Physical Geography, Stockholm University, Svante Arrhenius väg 8C, Frescati, 106 91 Stockholm, Sweden
Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
Naoise Nunan
Institute of Ecology and Environmental Sciences – Paris, Sorbonne Université-CNRS-IRD-INRA-P7-UPEC, 4 place Jussieu, 75005 Paris, France
Thomas Kätterer
Department of Ecology, Swedish University of Agricultural Sciences, P.O. Box 7044, 75007 Uppsala, Sweden
Stefano Manzoni
Department of Physical Geography, Stockholm University, Svante Arrhenius väg 8C, Frescati, 106 91 Stockholm, Sweden
Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
Viewed
Total article views: 3,399 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 02 Jul 2019)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
2,351 | 979 | 69 | 3,399 | 67 | 78 |
- HTML: 2,351
- PDF: 979
- XML: 69
- Total: 3,399
- BibTeX: 67
- EndNote: 78
Total article views: 2,655 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 23 Mar 2020)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
1,968 | 631 | 56 | 2,655 | 54 | 64 |
- HTML: 1,968
- PDF: 631
- XML: 56
- Total: 2,655
- BibTeX: 54
- EndNote: 64
Total article views: 744 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 02 Jul 2019)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
383 | 348 | 13 | 744 | 13 | 14 |
- HTML: 383
- PDF: 348
- XML: 13
- Total: 744
- BibTeX: 13
- EndNote: 14
Viewed (geographical distribution)
Total article views: 3,399 (including HTML, PDF, and XML)
Thereof 2,960 with geography defined
and 439 with unknown origin.
Total article views: 2,655 (including HTML, PDF, and XML)
Thereof 2,362 with geography defined
and 293 with unknown origin.
Total article views: 744 (including HTML, PDF, and XML)
Thereof 598 with geography defined
and 146 with unknown origin.
Country | # | Views | % |
---|
Country | # | Views | % |
---|
Country | # | Views | % |
---|
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Cited
36 citations as recorded by crossref.
- Soil carbon sequestration for climate change mitigation: Mineralization kinetics of organic inputs as an overlooked limitation J. Berthelin et al. 10.1111/ejss.13221
- When and why microbial-explicit soil organic carbon models can be unstable E. Schwarz et al. 10.5194/bg-21-3441-2024
- Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0) T. Wutzler et al. 10.5194/gmd-15-8377-2022
- Emergent Climatic Controls on Soil Carbon Turnover and Its Variability in Warm Climates H. Huang et al. 10.1029/2023GL105291
- Moisture conditions trigger different response patterns of soil respiration to biochar-induced changes in soil vertical water content and temperature based on a three-year field observation study J. Yang et al. 10.1016/j.agee.2024.109328
- Relationship between soil carbon sequestration and the ability of soil aggregates to transport dissolved oxygen X. Zhang et al. 10.1016/j.geoderma.2021.115370
- Theoretical insights from upscaling Michaelis–Menten microbial dynamics in biogeochemical models: a dimensionless approach C. Wilson & S. Gerber 10.5194/bg-18-5669-2021
- A multi-scale eco-evolutionary model of cooperation reveals how microbial adaptation influences soil decomposition E. Abs et al. 10.1038/s42003-020-01198-4
- Ecosystem-scale modelling of soil carbon dynamics: Time for a radical shift of perspective? P. Baveye 10.1016/j.soilbio.2023.109112
- Substrate spatial heterogeneity reduces soil microbial activity A. Shi et al. 10.1016/j.soilbio.2020.108068
- Effective parameters for biogeochemical reaction rates in heterogeneous porous media D. Ke et al. 10.1016/j.jhydrol.2023.129584
- Microscale heterogeneity controls macroscopic soil heterotrophic respiration by regulating resource availability and environmental stress Z. Yan et al. 10.1007/s10533-023-01044-9
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al. 10.1111/ejss.13256
- Persistence of soil organic carbon caused by functional complexity J. Lehmann et al. 10.1038/s41561-020-0612-3
- Storage of soil carbon is not sequestration: Straightforward graphical visualization of their basic differences P. Baveye et al. 10.1111/ejss.13380
- Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction J. Lennon et al. 10.1128/mbio.00455-24
- Scenario modelling of carbon mineralization in 3D soil architecture at the microscale: Toward an accessibility coefficient of organic matter for bacteria B. Mbé et al. 10.1111/ejss.13144
- Spatial Control of Microbial Pesticide Degradation in Soil: A Model-Based Scenario Analysis E. Schwarz et al. 10.1021/acs.est.2c03397
- Revisiting diffusion-based moisture functions: why do they fail? J. Zheng et al. 10.1016/j.soilbio.2021.108525
- Linking Soil Structure, Hydraulic Properties, and Organic Carbon Dynamics: A Holistic Framework to Study the Impact of Climate Change and Land Management A. Jha et al. 10.1029/2023JG007389
- Chemodiversity controls microbial assimilation of soil organic carbon: A theoretical model J. Weverka et al. 10.1016/j.soilbio.2023.109161
- A new concept for modelling the moisture dependence of heterotrophic soil respiration Z. Huang et al. 10.1016/j.soilbio.2023.109147
- Micro on a macroscale: relating microbial-scale soil processes to global ecosystem function D. Smercina et al. 10.1093/femsec/fiab091
- Microbial evolution—An under‐appreciated driver of soil carbon cycling E. Abs et al. 10.1111/gcb.17268
- How to adequately represent biological processes in modeling multifunctionality of arable soils H. Vogel et al. 10.1007/s00374-024-01802-3
- Should We Worry About Surficial Dynamics When Assessing Nutrient Cycling in the Groundwater? S. Khurana et al. 10.3389/frwa.2022.780297
- Adsorption and mineralization of metalaxyl-m and chlorpyrifos in irrigated Mediterranean soil under the effects of salinity M. Khouni et al. 10.1007/s11356-024-35411-2
- Coupling scales in process‐based soil organic carbon modeling including dynamic aggregation S. Zech et al. 10.1002/jpln.202300080
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al. 10.1111/ejss.13142
- A framework for modelling soil structure dynamics induced by biological activity K. Meurer et al. 10.1111/gcb.15289
- Denitrification‐Driven Transcription and Enzyme Production at the River‐Groundwater Interface: Insights From Reactive‐Transport Modeling A. Störiko et al. 10.1029/2021WR031584
- Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter O. Monga et al. 10.1016/j.cageo.2022.105240
- Comparing an exponential respiration model to alternative models for soil respiration components in a Canadian wildfire chronosequence (FireResp v1.0) J. Zobitz et al. 10.5194/gmd-14-6605-2021
- Spatial Control of Carbon Dynamics in Soil by Microbial Decomposer Communities H. Pagel et al. 10.3389/fenvs.2020.00002
- Physical, Chemical and Biological Effects on Soil Bacterial Dynamics in Microscale Models S. König et al. 10.3389/fevo.2020.00053
- Decomposition rate as an emergent property of optimal microbial foraging S. Manzoni et al. 10.3389/fevo.2023.1094269
33 citations as recorded by crossref.
- Soil carbon sequestration for climate change mitigation: Mineralization kinetics of organic inputs as an overlooked limitation J. Berthelin et al. 10.1111/ejss.13221
- When and why microbial-explicit soil organic carbon models can be unstable E. Schwarz et al. 10.5194/bg-21-3441-2024
- Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0) T. Wutzler et al. 10.5194/gmd-15-8377-2022
- Emergent Climatic Controls on Soil Carbon Turnover and Its Variability in Warm Climates H. Huang et al. 10.1029/2023GL105291
- Moisture conditions trigger different response patterns of soil respiration to biochar-induced changes in soil vertical water content and temperature based on a three-year field observation study J. Yang et al. 10.1016/j.agee.2024.109328
- Relationship between soil carbon sequestration and the ability of soil aggregates to transport dissolved oxygen X. Zhang et al. 10.1016/j.geoderma.2021.115370
- Theoretical insights from upscaling Michaelis–Menten microbial dynamics in biogeochemical models: a dimensionless approach C. Wilson & S. Gerber 10.5194/bg-18-5669-2021
- A multi-scale eco-evolutionary model of cooperation reveals how microbial adaptation influences soil decomposition E. Abs et al. 10.1038/s42003-020-01198-4
- Ecosystem-scale modelling of soil carbon dynamics: Time for a radical shift of perspective? P. Baveye 10.1016/j.soilbio.2023.109112
- Substrate spatial heterogeneity reduces soil microbial activity A. Shi et al. 10.1016/j.soilbio.2020.108068
- Effective parameters for biogeochemical reaction rates in heterogeneous porous media D. Ke et al. 10.1016/j.jhydrol.2023.129584
- Microscale heterogeneity controls macroscopic soil heterotrophic respiration by regulating resource availability and environmental stress Z. Yan et al. 10.1007/s10533-023-01044-9
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al. 10.1111/ejss.13256
- Persistence of soil organic carbon caused by functional complexity J. Lehmann et al. 10.1038/s41561-020-0612-3
- Storage of soil carbon is not sequestration: Straightforward graphical visualization of their basic differences P. Baveye et al. 10.1111/ejss.13380
- Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction J. Lennon et al. 10.1128/mbio.00455-24
- Scenario modelling of carbon mineralization in 3D soil architecture at the microscale: Toward an accessibility coefficient of organic matter for bacteria B. Mbé et al. 10.1111/ejss.13144
- Spatial Control of Microbial Pesticide Degradation in Soil: A Model-Based Scenario Analysis E. Schwarz et al. 10.1021/acs.est.2c03397
- Revisiting diffusion-based moisture functions: why do they fail? J. Zheng et al. 10.1016/j.soilbio.2021.108525
- Linking Soil Structure, Hydraulic Properties, and Organic Carbon Dynamics: A Holistic Framework to Study the Impact of Climate Change and Land Management A. Jha et al. 10.1029/2023JG007389
- Chemodiversity controls microbial assimilation of soil organic carbon: A theoretical model J. Weverka et al. 10.1016/j.soilbio.2023.109161
- A new concept for modelling the moisture dependence of heterotrophic soil respiration Z. Huang et al. 10.1016/j.soilbio.2023.109147
- Micro on a macroscale: relating microbial-scale soil processes to global ecosystem function D. Smercina et al. 10.1093/femsec/fiab091
- Microbial evolution—An under‐appreciated driver of soil carbon cycling E. Abs et al. 10.1111/gcb.17268
- How to adequately represent biological processes in modeling multifunctionality of arable soils H. Vogel et al. 10.1007/s00374-024-01802-3
- Should We Worry About Surficial Dynamics When Assessing Nutrient Cycling in the Groundwater? S. Khurana et al. 10.3389/frwa.2022.780297
- Adsorption and mineralization of metalaxyl-m and chlorpyrifos in irrigated Mediterranean soil under the effects of salinity M. Khouni et al. 10.1007/s11356-024-35411-2
- Coupling scales in process‐based soil organic carbon modeling including dynamic aggregation S. Zech et al. 10.1002/jpln.202300080
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al. 10.1111/ejss.13142
- A framework for modelling soil structure dynamics induced by biological activity K. Meurer et al. 10.1111/gcb.15289
- Denitrification‐Driven Transcription and Enzyme Production at the River‐Groundwater Interface: Insights From Reactive‐Transport Modeling A. Störiko et al. 10.1029/2021WR031584
- Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter O. Monga et al. 10.1016/j.cageo.2022.105240
- Comparing an exponential respiration model to alternative models for soil respiration components in a Canadian wildfire chronosequence (FireResp v1.0) J. Zobitz et al. 10.5194/gmd-14-6605-2021
3 citations as recorded by crossref.
- Spatial Control of Carbon Dynamics in Soil by Microbial Decomposer Communities H. Pagel et al. 10.3389/fenvs.2020.00002
- Physical, Chemical and Biological Effects on Soil Bacterial Dynamics in Microscale Models S. König et al. 10.3389/fevo.2020.00053
- Decomposition rate as an emergent property of optimal microbial foraging S. Manzoni et al. 10.3389/fevo.2023.1094269
Latest update: 14 Dec 2024
Short summary
Soils are heterogeneous, which results in a nonuniform spatial distribution of substrates and the microorganisms feeding on them. Our results show that the variability in the spatial distribution of substrates and microorganisms at the pore scale is crucial because it affects how fast substrates are used by microorganisms and thus the decomposition rate observed at the soil core scale. This work provides a methodology to include microscale heterogeneity in soil carbon cycling models.
Soils are heterogeneous, which results in a nonuniform spatial distribution of substrates and...