Articles | Volume 11, issue 12
https://doi.org/10.5194/gmd-11-4739-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-11-4739-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
30 Nov 2018
Development and technical paper |
| 30 Nov 2018
| 30 Nov 2018
Land surface model parameter optimisation using in situ flux data: comparison of gradient-based versus random search algorithms (a case study using ORCHIDEE v1.9.5.2)
Vladislav Bastrikov
CORRESPONDING AUTHOR
Laboratoire des Sciences du Climat et de l'Environnement, UMR 8212 CEA-CNRS-UVSQ, 91191 Gif-sur-Yvette, France
Institute of Industrial Ecology UB RAS, 620219 Ekaterinburg, Russia
Natasha MacBean
Laboratoire des Sciences du Climat et de l'Environnement, UMR 8212 CEA-CNRS-UVSQ, 91191 Gif-sur-Yvette, France
now at: School of Natural Resources and the Environment, University of Arizona, 1064 E Lowell St., 85721,
Tucson, AZ, USA
Cédric Bacour
Noveltis, 153 rue du Lac, 31670 Labège, France
Diego Santaren
Laboratoire des Sciences du Climat et de l'Environnement, UMR 8212 CEA-CNRS-UVSQ, 91191 Gif-sur-Yvette, France
Sylvain Kuppel
Northern Rivers Institute, University of Aberdeen, Aberdeen, AB24 3UF, UK
Philippe Peylin
Laboratoire des Sciences du Climat et de l'Environnement, UMR 8212 CEA-CNRS-UVSQ, 91191 Gif-sur-Yvette, France
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Marta Camino-Serrano, Bertrand Guenet, Sebastiaan Luyssaert, Philippe Ciais, Vladislav Bastrikov, Bruno De Vos, Bert Gielen, Gerd Gleixner, Albert Jornet-Puig, Klaus Kaiser, Dolly Kothawala, Ronny Lauerwald, Josep Peñuelas, Marion Schrumpf, Sara Vicca, Nicolas Vuichard, David Walmsley, and Ivan A. Janssens
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Arsène Druel, Philippe Peylin, Gerhard Krinner, Philippe Ciais, Nicolas Viovy, Anna Peregon, Vladislav Bastrikov, Natalya Kosykh, and Nina Mironycheva-Tokareva
Geosci. Model Dev., 10, 4693–4722, https://doi.org/10.5194/gmd-10-4693-2017, https://doi.org/10.5194/gmd-10-4693-2017, 2017
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Yiying Chen, James Ryder, Vladislav Bastrikov, Matthew J. McGrath, Kim Naudts, Juliane Otto, Catherine Ottlé, Philippe Peylin, Jan Polcher, Aude Valade, Andrew Black, Jan A. Elbers, Eddy Moors, Thomas Foken, Eva van Gorsel, Vanessa Haverd, Bernard Heinesch, Frank Tiedemann, Alexander Knohl, Samuli Launiainen, Denis Loustau, Jérôme Ogée, Timo Vessala, and Sebastiaan Luyssaert
Geosci. Model Dev., 9, 2951–2972, https://doi.org/10.5194/gmd-9-2951-2016, https://doi.org/10.5194/gmd-9-2951-2016, 2016
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K. Gribanov, J. Jouzel, V. Bastrikov, J.-L. Bonne, F.-M. Breon, M. Butzin, O. Cattani, V. Masson-Delmotte, N. Rokotyan, M. Werner, and V. Zakharov
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This preprint is open for discussion and under review for Geoscientific Model Development (GMD).
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Diego Santaren, Janne Hakkarainen, Gerrit Kuhlmann, Erik Koene, Frédéric Chevallier, Iolanda Ialongo, Hannakaisa Lindqvist, Janne Nurmela, Johanna Tamminen, Laia Amorós, Dominik Brunner, and Grégoire Broquet
Atmos. Meas. Tech., 18, 211–239, https://doi.org/10.5194/amt-18-211-2025, https://doi.org/10.5194/amt-18-211-2025, 2025
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Hydrol. Earth Syst. Sci., 29, 261–290, https://doi.org/10.5194/hess-29-261-2025, https://doi.org/10.5194/hess-29-261-2025, 2025
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Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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Ana Maria Roxana Petrescu, Glen P. Peters, Richard Engelen, Sander Houweling, Dominik Brunner, Aki Tsuruta, Bradley Matthews, Prabir K. Patra, Dmitry Belikov, Rona L. Thompson, Lena Höglund-Isaksson, Wenxin Zhang, Arjo J. Segers, Giuseppe Etiope, Giancarlo Ciotoli, Philippe Peylin, Frédéric Chevallier, Tuula Aalto, Robbie M. Andrew, David Bastviken, Antoine Berchet, Grégoire Broquet, Giulia Conchedda, Stijn N. C. Dellaert, Hugo Denier van der Gon, Johannes Gütschow, Jean-Matthieu Haussaire, Ronny Lauerwald, Tiina Markkanen, Jacob C. A. van Peet, Isabelle Pison, Pierre Regnier, Espen Solum, Marko Scholze, Maria Tenkanen, Francesco N. Tubiello, Guido R. van der Werf, and John R. Worden
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This study provides an overview of data availability from observation- and inventory-based CH4 emission estimates. It systematically compares them and provides recommendations for robust comparisons, aiming to steadily engage more parties in using observational methods to complement their UNFCCC submissions. Anticipating improvements in atmospheric modelling and observations, future developments need to resolve knowledge gaps in both approaches and to better quantify remaining uncertainty.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Rodrigo Rivera-Martinez, Pramod Kumar, Olivier Laurent, Gregoire Broquet, Christopher Caldow, Ford Cropley, Diego Santaren, Adil Shah, Cécile Mallet, Michel Ramonet, Leonard Rivier, Catherine Juery, Olivier Duclaux, Caroline Bouchet, Elisa Allegrini, Hervé Utard, and Philippe Ciais
Atmos. Meas. Tech., 17, 4257–4290, https://doi.org/10.5194/amt-17-4257-2024, https://doi.org/10.5194/amt-17-4257-2024, 2024
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We explore the use of metal oxide semiconductors (MOSs) as a low-cost alternative for detecting and measuring CH4 emissions from industrial facilities. MOSs were exposed to several controlled releases to test their accuracy in detecting and quantifying emissions. Two reconstruction models were compared, and emission estimates were computed using a Gaussian dispersion model. Findings show that MOSs can provide accurate emission estimates with a 25 % emission rate error and a 9.5 m location error.
Gerrit Kuhlmann, Erik Koene, Sandro Meier, Diego Santaren, Grégoire Broquet, Frédéric Chevallier, Janne Hakkarainen, Janne Nurmela, Laia Amorós, Johanna Tamminen, and Dominik Brunner
Geosci. Model Dev., 17, 4773–4789, https://doi.org/10.5194/gmd-17-4773-2024, https://doi.org/10.5194/gmd-17-4773-2024, 2024
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We present a Python software library for data-driven emission quantification (ddeq). It can be used to determine the emissions of hot spots (cities, power plants and industry) from remote sensing images using different methods. ddeq can be extended for new datasets and methods, providing a powerful community tool for users and developers. The application of the methods is shown using Jupyter notebooks included in the library.
Nina Raoult, Louis-Axel Edouard-Rambaut, Nicolas Vuichard, Vladislav Bastrikov, Anne Sofie Lansø, Bertrand Guenet, and Philippe Peylin
Biogeosciences, 21, 1017–1036, https://doi.org/10.5194/bg-21-1017-2024, https://doi.org/10.5194/bg-21-1017-2024, 2024
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Observations are used to reduce uncertainty in land surface models (LSMs) by optimising poorly constraining parameters. However, optimising against current conditions does not necessarily ensure that the parameters treated as invariant will be robust in a changing climate. Manipulation experiments offer us a unique chance to optimise our models under different (here atmospheric CO2) conditions. By using these data in optimisations, we gain confidence in the future projections of LSMs.
Mounia Mostefaoui, Philippe Ciais, Matthew J. McGrath, Philippe Peylin, Prabir K. Patra, and Yolandi Ernst
Earth Syst. Sci. Data, 16, 245–275, https://doi.org/10.5194/essd-16-245-2024, https://doi.org/10.5194/essd-16-245-2024, 2024
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Our aim is to assess African anthropogenic greenhouse gas emissions and removals by using different data products, including inventories and process-based models, and to compare their relative merits with inversion data coming from satellites. We show a good match among the various estimates in terms of overall trends at a regional level and on a decadal basis, but large differences exist even among similar data types, which is a limit to the possibility of verification of country-reported data.
Matthew J. McGrath, Ana Maria Roxana Petrescu, Philippe Peylin, Robbie M. Andrew, Bradley Matthews, Frank Dentener, Juraj Balkovič, Vladislav Bastrikov, Meike Becker, Gregoire Broquet, Philippe Ciais, Audrey Fortems-Cheiney, Raphael Ganzenmüller, Giacomo Grassi, Ian Harris, Matthew Jones, Jürgen Knauer, Matthias Kuhnert, Guillaume Monteil, Saqr Munassar, Paul I. Palmer, Glen P. Peters, Chunjing Qiu, Mart-Jan Schelhaas, Oksana Tarasova, Matteo Vizzarri, Karina Winkler, Gianpaolo Balsamo, Antoine Berchet, Peter Briggs, Patrick Brockmann, Frédéric Chevallier, Giulia Conchedda, Monica Crippa, Stijn N. C. Dellaert, Hugo A. C. Denier van der Gon, Sara Filipek, Pierre Friedlingstein, Richard Fuchs, Michael Gauss, Christoph Gerbig, Diego Guizzardi, Dirk Günther, Richard A. Houghton, Greet Janssens-Maenhout, Ronny Lauerwald, Bas Lerink, Ingrid T. Luijkx, Géraud Moulas, Marilena Muntean, Gert-Jan Nabuurs, Aurélie Paquirissamy, Lucia Perugini, Wouter Peters, Roberto Pilli, Julia Pongratz, Pierre Regnier, Marko Scholze, Yusuf Serengil, Pete Smith, Efisio Solazzo, Rona L. Thompson, Francesco N. Tubiello, Timo Vesala, and Sophia Walther
Earth Syst. Sci. Data, 15, 4295–4370, https://doi.org/10.5194/essd-15-4295-2023, https://doi.org/10.5194/essd-15-4295-2023, 2023
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Accurate estimation of fluxes of carbon dioxide from the land surface is essential for understanding future impacts of greenhouse gas emissions on the climate system. A wide variety of methods currently exist to estimate these sources and sinks. We are continuing work to develop annual comparisons of these diverse methods in order to clarify what they all actually calculate and to resolve apparent disagreement, in addition to highlighting opportunities for increased understanding.
Nina Raoult, Sylvie Charbit, Christophe Dumas, Fabienne Maignan, Catherine Ottlé, and Vladislav Bastrikov
The Cryosphere, 17, 2705–2724, https://doi.org/10.5194/tc-17-2705-2023, https://doi.org/10.5194/tc-17-2705-2023, 2023
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Greenland ice sheet melting due to global warming could significantly impact global sea-level rise. The ice sheet's albedo, i.e. how reflective the surface is, affects the melting speed. The ORCHIDEE computer model is used to simulate albedo and snowmelt to make predictions. However, the albedo in ORCHIDEE is lower than that observed using satellites. To correct this, we change model parameters (e.g. the rate of snow decay) to reduce the difference between simulated and observed values.
Rodrigo Andres Rivera Martinez, Diego Santaren, Olivier Laurent, Gregoire Broquet, Ford Cropley, Cécile Mallet, Michel Ramonet, Adil Shah, Leonard Rivier, Caroline Bouchet, Catherine Juery, Olivier Duclaux, and Philippe Ciais
Atmos. Meas. Tech., 16, 2209–2235, https://doi.org/10.5194/amt-16-2209-2023, https://doi.org/10.5194/amt-16-2209-2023, 2023
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A network of low-cost sensors is a good alternative to improve the detection of fugitive CH4 emissions. We present the results of four tests conducted with two types of Figaro sensors that were assembled on four chambers in a laboratory experiment: a comparison of five models to reconstruct the CH4 signal, a strategy to reduce the training set size, a detection of age effects in the sensors and a test of the capability to transfer a model between chambers for the same type of sensor.
Kandice L. Harper, Céline Lamarche, Andrew Hartley, Philippe Peylin, Catherine Ottlé, Vladislav Bastrikov, Rodrigo San Martín, Sylvia I. Bohnenstengel, Grit Kirches, Martin Boettcher, Roman Shevchuk, Carsten Brockmann, and Pierre Defourny
Earth Syst. Sci. Data, 15, 1465–1499, https://doi.org/10.5194/essd-15-1465-2023, https://doi.org/10.5194/essd-15-1465-2023, 2023
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We built a spatially explicit annual plant-functional-type (PFT) dataset for 1992–2020 exhibiting intra-class spatial variability in PFT fractional cover at 300 m. For each year, 14 maps of percentage cover are produced: bare soil, water, permanent snow/ice, built, managed grasses, natural grasses, and trees and shrubs, each split into leaf type and seasonality. Model simulations indicate significant differences in simulated carbon, water, and energy fluxes in some regions using this new set.
Cédric Bacour, Natasha MacBean, Frédéric Chevallier, Sébastien Léonard, Ernest N. Koffi, and Philippe Peylin
Biogeosciences, 20, 1089–1111, https://doi.org/10.5194/bg-20-1089-2023, https://doi.org/10.5194/bg-20-1089-2023, 2023
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The impact of assimilating different dataset combinations on regional to global-scale C budgets is explored with the ORCHIDEE model. Assimilating simultaneously multiple datasets is preferable to optimize the values of the model parameters and avoid model overfitting. The challenges in constraining soil C disequilibrium using atmospheric CO2 data are highlighted for an accurate prediction of the land sink distribution.
Ana Maria Roxana Petrescu, Chunjing Qiu, Matthew J. McGrath, Philippe Peylin, Glen P. Peters, Philippe Ciais, Rona L. Thompson, Aki Tsuruta, Dominik Brunner, Matthias Kuhnert, Bradley Matthews, Paul I. Palmer, Oksana Tarasova, Pierre Regnier, Ronny Lauerwald, David Bastviken, Lena Höglund-Isaksson, Wilfried Winiwarter, Giuseppe Etiope, Tuula Aalto, Gianpaolo Balsamo, Vladislav Bastrikov, Antoine Berchet, Patrick Brockmann, Giancarlo Ciotoli, Giulia Conchedda, Monica Crippa, Frank Dentener, Christine D. Groot Zwaaftink, Diego Guizzardi, Dirk Günther, Jean-Matthieu Haussaire, Sander Houweling, Greet Janssens-Maenhout, Massaer Kouyate, Adrian Leip, Antti Leppänen, Emanuele Lugato, Manon Maisonnier, Alistair J. Manning, Tiina Markkanen, Joe McNorton, Marilena Muntean, Gabriel D. Oreggioni, Prabir K. Patra, Lucia Perugini, Isabelle Pison, Maarit T. Raivonen, Marielle Saunois, Arjo J. Segers, Pete Smith, Efisio Solazzo, Hanqin Tian, Francesco N. Tubiello, Timo Vesala, Guido R. van der Werf, Chris Wilson, and Sönke Zaehle
Earth Syst. Sci. Data, 15, 1197–1268, https://doi.org/10.5194/essd-15-1197-2023, https://doi.org/10.5194/essd-15-1197-2023, 2023
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This study updates the state-of-the-art scientific overview of CH4 and N2O emissions in the EU27 and UK in Petrescu et al. (2021a). Yearly updates are needed to improve the different respective approaches and to inform on the development of formal verification systems. It integrates the most recent emission inventories, process-based model and regional/global inversions, comparing them with UNFCCC national GHG inventories, in support to policy to facilitate real-time verification procedures.
Elise Potier, Grégoire Broquet, Yilong Wang, Diego Santaren, Antoine Berchet, Isabelle Pison, Julia Marshall, Philippe Ciais, François-Marie Bréon, and Frédéric Chevallier
Atmos. Meas. Tech., 15, 5261–5288, https://doi.org/10.5194/amt-15-5261-2022, https://doi.org/10.5194/amt-15-5261-2022, 2022
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Atmospheric inversion at local–regional scales over Europe and pseudo-data assimilation are used to evaluate how CO2 and 14CO2 ground-based measurement networks could complement satellite CO2 imagers to monitor fossil fuel (FF) CO2 emissions. This combination significantly improves precision in the FF emission estimates in areas with a dense network but does not strongly support the separation of the FF from the biogenic signals or the spatio-temporal extrapolation of the satellite information.
Elodie Salmon, Fabrice Jégou, Bertrand Guenet, Line Jourdain, Chunjing Qiu, Vladislav Bastrikov, Christophe Guimbaud, Dan Zhu, Philippe Ciais, Philippe Peylin, Sébastien Gogo, Fatima Laggoun-Défarge, Mika Aurela, M. Syndonia Bret-Harte, Jiquan Chen, Bogdan H. Chojnicki, Housen Chu, Colin W. Edgar, Eugenie S. Euskirchen, Lawrence B. Flanagan, Krzysztof Fortuniak, David Holl, Janina Klatt, Olaf Kolle, Natalia Kowalska, Lars Kutzbach, Annalea Lohila, Lutz Merbold, Włodzimierz Pawlak, Torsten Sachs, and Klaudia Ziemblińska
Geosci. Model Dev., 15, 2813–2838, https://doi.org/10.5194/gmd-15-2813-2022, https://doi.org/10.5194/gmd-15-2813-2022, 2022
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A methane model that features methane production and transport by plants, the ebullition process and diffusion in soil, oxidation to CO2, and CH4 fluxes to the atmosphere has been embedded in the ORCHIDEE-PEAT land surface model, which includes an explicit representation of northern peatlands. This model, ORCHIDEE-PCH4, was calibrated and evaluated on 14 peatland sites. Results show that the model is sensitive to temperature and substrate availability over the top 75 cm of soil depth.
Guillaume Marie, B. Sebastiaan Luyssaert, Cecile Dardel, Thuy Le Toan, Alexandre Bouvet, Stéphane Mermoz, Ludovic Villard, Vladislav Bastrikov, and Philippe Peylin
Geosci. Model Dev., 15, 2599–2617, https://doi.org/10.5194/gmd-15-2599-2022, https://doi.org/10.5194/gmd-15-2599-2022, 2022
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Most Earth system models make use of vegetation maps to initialize a simulation at global scale. Satellite-based biomass map estimates for Africa were used to estimate cover fractions for the 15 land cover classes. This study successfully demonstrates that satellite-based biomass maps can be used to better constrain vegetation maps. Applying this approach at the global scale would increase confidence in assessments of present-day biomass stocks.
Marine Remaud, Frédéric Chevallier, Fabienne Maignan, Sauveur Belviso, Antoine Berchet, Alexandra Parouffe, Camille Abadie, Cédric Bacour, Sinikka Lennartz, and Philippe Peylin
Atmos. Chem. Phys., 22, 2525–2552, https://doi.org/10.5194/acp-22-2525-2022, https://doi.org/10.5194/acp-22-2525-2022, 2022
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Carbonyl sulfide (COS) has been recognized as a promising indicator of the plant gross primary production (GPP). Here, we assimilate both COS and CO2 measurements into an atmospheric transport model to obtain information on GPP, plant respiration and COS budget. A possible scenario for the period 2008–2019 leads to a global COS biospheric sink of 800 GgS yr−1 and higher oceanic emissions between 400 and 600 GgS yr−1.
Stephanie G. Stettz, Nicholas C. Parazoo, A. Anthony Bloom, Peter D. Blanken, David R. Bowling, Sean P. Burns, Cédric Bacour, Fabienne Maignan, Brett Raczka, Alexander J. Norton, Ian Baker, Mathew Williams, Mingjie Shi, Yongguang Zhang, and Bo Qiu
Biogeosciences, 19, 541–558, https://doi.org/10.5194/bg-19-541-2022, https://doi.org/10.5194/bg-19-541-2022, 2022
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Uncertainty in the response of photosynthesis to temperature poses a major challenge to predicting the response of forests to climate change. In this paper, we study how photosynthesis in a mountainous evergreen forest is limited by temperature. This study highlights that cold temperature is a key factor that controls spring photosynthesis. Including the cold-temperature limitation in an ecosystem model improved its ability to simulate spring photosynthesis.
Luis Guanter, Cédric Bacour, Andreas Schneider, Ilse Aben, Tim A. van Kempen, Fabienne Maignan, Christian Retscher, Philipp Köhler, Christian Frankenberg, Joanna Joiner, and Yongguang Zhang
Earth Syst. Sci. Data, 13, 5423–5440, https://doi.org/10.5194/essd-13-5423-2021, https://doi.org/10.5194/essd-13-5423-2021, 2021
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Sun-induced chlorophyll fluorescence (SIF) is an electromagnetic signal emitted by plants in the red and far-red parts of the spectrum. It has a functional link to photosynthesis and can be measured by satellite instruments, which makes it an important variable for the remote monitoring of the photosynthetic activity of vegetation ecosystems around the world. In this contribution we present a SIF dataset derived from the new Sentinel-5P TROPOMI missions.
Antoine Berchet, Espen Sollum, Rona L. Thompson, Isabelle Pison, Joël Thanwerdas, Grégoire Broquet, Frédéric Chevallier, Tuula Aalto, Adrien Berchet, Peter Bergamaschi, Dominik Brunner, Richard Engelen, Audrey Fortems-Cheiney, Christoph Gerbig, Christine D. Groot Zwaaftink, Jean-Matthieu Haussaire, Stephan Henne, Sander Houweling, Ute Karstens, Werner L. Kutsch, Ingrid T. Luijkx, Guillaume Monteil, Paul I. Palmer, Jacob C. A. van Peet, Wouter Peters, Philippe Peylin, Elise Potier, Christian Rödenbeck, Marielle Saunois, Marko Scholze, Aki Tsuruta, and Yuanhong Zhao
Geosci. Model Dev., 14, 5331–5354, https://doi.org/10.5194/gmd-14-5331-2021, https://doi.org/10.5194/gmd-14-5331-2021, 2021
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We present here the Community Inversion Framework (CIF) to help rationalize development efforts and leverage the strengths of individual inversion systems into a comprehensive framework. The CIF is a programming protocol to allow various inversion bricks to be exchanged among researchers.
The ensemble of bricks makes a flexible, transparent and open-source Python-based tool. We describe the main structure and functionalities and demonstrate it in a simple academic case.
Fabienne Maignan, Camille Abadie, Marine Remaud, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Róisín Commane, Richard Wehr, J. Elliott Campbell, Sauveur Belviso, Stephen A. Montzka, Nina Raoult, Ulli Seibt, Yoichi P. Shiga, Nicolas Vuichard, Mary E. Whelan, and Philippe Peylin
Biogeosciences, 18, 2917–2955, https://doi.org/10.5194/bg-18-2917-2021, https://doi.org/10.5194/bg-18-2917-2021, 2021
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The assimilation of carbonyl sulfide (COS) by continental vegetation has been proposed as a proxy for gross primary production (GPP). Using a land surface and a transport model, we compare a mechanistic representation of the plant COS uptake (Berry et al., 2013) to the classical leaf relative uptake (LRU) approach linking GPP and vegetation COS fluxes. We show that at high temporal resolutions a mechanistic approach is mandatory, but at large scales the LRU approach compares similarly.
Zichong Chen, Junjie Liu, Daven K. Henze, Deborah N. Huntzinger, Kelley C. Wells, Stephen Sitch, Pierre Friedlingstein, Emilie Joetzjer, Vladislav Bastrikov, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Etsushi Kato, Sebastian Lienert, Danica L. Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Benjamin Poulter, Hanqin Tian, Andrew J. Wiltshire, Sönke Zaehle, and Scot M. Miller
Atmos. Chem. Phys., 21, 6663–6680, https://doi.org/10.5194/acp-21-6663-2021, https://doi.org/10.5194/acp-21-6663-2021, 2021
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NASA's Orbiting Carbon Observatory 2 (OCO-2) satellite observes atmospheric CO2 globally. We use a multiple regression and inverse model to quantify the relationships between OCO-2 and environmental drivers within individual years for 2015–2018 and within seven global biomes. Our results point to limitations of current space-based observations for inferring environmental relationships but also indicate the potential to inform key relationships that are very uncertain in process-based models.
Hiroki Mizuochi, Agnès Ducharne, Frédérique Cheruy, Josefine Ghattas, Amen Al-Yaari, Jean-Pierre Wigneron, Vladislav Bastrikov, Philippe Peylin, Fabienne Maignan, and Nicolas Vuichard
Hydrol. Earth Syst. Sci., 25, 2199–2221, https://doi.org/10.5194/hess-25-2199-2021, https://doi.org/10.5194/hess-25-2199-2021, 2021
Natasha MacBean, Russell L. Scott, Joel A. Biederman, Catherine Ottlé, Nicolas Vuichard, Agnès Ducharne, Thomas Kolb, Sabina Dore, Marcy Litvak, and David J. P. Moore
Hydrol. Earth Syst. Sci., 24, 5203–5230, https://doi.org/10.5194/hess-24-5203-2020, https://doi.org/10.5194/hess-24-5203-2020, 2020
Nicholas C. Parazoo, Troy Magney, Alex Norton, Brett Raczka, Cédric Bacour, Fabienne Maignan, Ian Baker, Yongguang Zhang, Bo Qiu, Mingjie Shi, Natasha MacBean, Dave R. Bowling, Sean P. Burns, Peter D. Blanken, Jochen Stutz, Katja Grossmann, and Christian Frankenberg
Biogeosciences, 17, 3733–3755, https://doi.org/10.5194/bg-17-3733-2020, https://doi.org/10.5194/bg-17-3733-2020, 2020
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Satellite measurements of solar-induced chlorophyll fluorescence (SIF) provide a global measure of photosynthetic change. This enables scientists to better track carbon cycle responses to environmental change and tune biochemical processes in vegetation models for an improved simulation of future change. We use tower-instrumented SIF measurements and controlled model experiments to assess the state of the art in terrestrial biosphere SIF modeling and find a wide range of sensitivities to light.
Pierre Friedlingstein, Matthew W. Jones, Michael O'Sullivan, Robbie M. Andrew, Judith Hauck, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Dorothee C. E. Bakker, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Peter Anthoni, Leticia Barbero, Ana Bastos, Vladislav Bastrikov, Meike Becker, Laurent Bopp, Erik Buitenhuis, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Kim I. Currie, Richard A. Feely, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Daniel S. Goll, Nicolas Gruber, Sören Gutekunst, Ian Harris, Vanessa Haverd, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Jed O. Kaplan, Etsushi Kato, Kees Klein Goldewijk, Jan Ivar Korsbakken, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Gregg Marland, Patrick C. McGuire, Joe R. Melton, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Craig Neill, Abdirahman M. Omar, Tsuneo Ono, Anna Peregon, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Roland Séférian, Jörg Schwinger, Naomi Smith, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Guido R. van der Werf, Andrew J. Wiltshire, and Sönke Zaehle
Earth Syst. Sci. Data, 11, 1783–1838, https://doi.org/10.5194/essd-11-1783-2019, https://doi.org/10.5194/essd-11-1783-2019, 2019
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The Global Carbon Budget 2019 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Frédéric Chevallier, Marine Remaud, Christopher W. O'Dell, David Baker, Philippe Peylin, and Anne Cozic
Atmos. Chem. Phys., 19, 14233–14251, https://doi.org/10.5194/acp-19-14233-2019, https://doi.org/10.5194/acp-19-14233-2019, 2019
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We present a way to rate the CO2 flux estimates made from inversion of a global atmospheric transport model. Our approach relies on accurate aircraft measurements in the free troposphere. It shows that some satellite soundings can now provide inversion results that are, despite their uncertainty, comparable in credibility to traditional inversions using the accurate but sparse surface network and that these inversions are, therefore, complementary for studies of the global carbon budget.
Nicolas Vuichard, Palmira Messina, Sebastiaan Luyssaert, Bertrand Guenet, Sönke Zaehle, Josefine Ghattas, Vladislav Bastrikov, and Philippe Peylin
Geosci. Model Dev., 12, 4751–4779, https://doi.org/10.5194/gmd-12-4751-2019, https://doi.org/10.5194/gmd-12-4751-2019, 2019
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In this research, we present a new version of the global terrestrial ecosystem model ORCHIDEE in which carbon and nitrogen cycles are coupled. We evaluate its skills at simulating primary production at 78 sites and at a global scale. Based on a set of additional simulations in which carbon and nitrogen cycles are coupled and uncoupled, we show that the functional responses of the model with carbon–nitrogen interactions better agree with our current understanding of photosynthesis.
Jinghui Lian, François-Marie Bréon, Grégoire Broquet, T. Scott Zaccheo, Jeremy Dobler, Michel Ramonet, Johannes Staufer, Diego Santaren, Irène Xueref-Remy, and Philippe Ciais
Atmos. Chem. Phys., 19, 13809–13825, https://doi.org/10.5194/acp-19-13809-2019, https://doi.org/10.5194/acp-19-13809-2019, 2019
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CO2 emissions within urban areas impact nearby and downwind concentrations. A different system, based on bi-wavelength laser measurements, has been deployed over Paris. It samples CO2 concentrations along horizontal lines, between a transceiver and a reflector. In this paper, we analyze the measurements provided by this system, together with the more classical in situ sampling and high-resolution modeling. We focus on the temporal and spatial variability of atmospheric CO2 concentrations.
Yilong Wang, Philippe Ciais, Grégoire Broquet, François-Marie Bréon, Tomohiro Oda, Franck Lespinas, Yasjka Meijer, Armin Loescher, Greet Janssens-Maenhout, Bo Zheng, Haoran Xu, Shu Tao, Kevin R. Gurney, Geoffrey Roest, Diego Santaren, and Yongxian Su
Earth Syst. Sci. Data, 11, 687–703, https://doi.org/10.5194/essd-11-687-2019, https://doi.org/10.5194/essd-11-687-2019, 2019
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We address the question of the global characterization of fossil fuel CO2 emission hotspots that may cause coherent XCO2 plumes in space-borne CO2 images, based on the ODIAC global high-resolution 1 km fossil fuel emission data product. For space imagery with 0.5 ppm precision for a single XCO2 measurement, a total of 11 314 hotspots are identified, covering 72 % of the global emissions. These hotspots define the targets for the purpose of monitoring fossil fuel CO2 emissions from space.
Sylvain Kuppel, Doerthe Tetzlaff, Marco P. Maneta, and Chris Soulsby
Geosci. Model Dev., 11, 3045–3069, https://doi.org/10.5194/gmd-11-3045-2018, https://doi.org/10.5194/gmd-11-3045-2018, 2018
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This paper presents a novel ecohydrological model in which both the fluxes of water and the relative concentration in stable isotopes (2H and 18O) can be simulated. Spatial heterogeneity, lateral transfers and plant-driven water use are incorporated. A thorough evaluation shows encouraging results using a wide range of in situ measurements from a Scottish catchment. The same modelling principles are then used to simulate how (and where) precipitation ages as water transits in the catchment.
Fuxing Wang, Jan Polcher, Philippe Peylin, and Vladislav Bastrikov
Hydrol. Earth Syst. Sci., 22, 3863–3882, https://doi.org/10.5194/hess-22-3863-2018, https://doi.org/10.5194/hess-22-3863-2018, 2018
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This work improves river discharge estimation by taking advantages of observation and model simulations. The new estimation takes into account both gauged and un-gauged rivers, and it compensates model systematic errors and missing processes (e.g., human water usage). This improved estimation is important not only for water resources management and ecosystem health over continent but also for ocean dynamics and salinity.
Marta Camino-Serrano, Bertrand Guenet, Sebastiaan Luyssaert, Philippe Ciais, Vladislav Bastrikov, Bruno De Vos, Bert Gielen, Gerd Gleixner, Albert Jornet-Puig, Klaus Kaiser, Dolly Kothawala, Ronny Lauerwald, Josep Peñuelas, Marion Schrumpf, Sara Vicca, Nicolas Vuichard, David Walmsley, and Ivan A. Janssens
Geosci. Model Dev., 11, 937–957, https://doi.org/10.5194/gmd-11-937-2018, https://doi.org/10.5194/gmd-11-937-2018, 2018
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Global models generally oversimplify the representation of soil organic carbon (SOC), and thus its response to global warming remains uncertain. We present the new soil module ORCHIDEE-SOM, within the global model ORCHIDEE, that refines the representation of SOC dynamics and includes the dissolved organic carbon (DOC) processes. The model is able to reproduce SOC stocks and DOC concentrations in four different ecosystems, opening an opportunity for improved predictions of SOC in global models.
Wei Li, Natasha MacBean, Philippe Ciais, Pierre Defourny, Céline Lamarche, Sophie Bontemps, Richard A. Houghton, and Shushi Peng
Earth Syst. Sci. Data, 10, 219–234, https://doi.org/10.5194/essd-10-219-2018, https://doi.org/10.5194/essd-10-219-2018, 2018
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We evaluated the land cover changes based on plant functional types (PFTs) derived from the newly released annual ESA land cover maps. We addressed the geographical distributions and temporal trends of the translated PFT maps and compared with other datasets commonly used by the land surface model community. Different choices of these datasets for the applications in land surface models are proposed depending on the research purposes.
Arsène Druel, Philippe Peylin, Gerhard Krinner, Philippe Ciais, Nicolas Viovy, Anna Peregon, Vladislav Bastrikov, Natalya Kosykh, and Nina Mironycheva-Tokareva
Geosci. Model Dev., 10, 4693–4722, https://doi.org/10.5194/gmd-10-4693-2017, https://doi.org/10.5194/gmd-10-4693-2017, 2017
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To improve the simulation of vegetation–climate feedbacks at high latitudes, three new circumpolar vegetation types were added in the ORCHIDEE land surface model: bryophytes (mosses) and lichens, Arctic shrubs, and Arctic grasses. This article is an introduction to the modification of vegetation distribution and physical behaviour, implying for example lower productivity, roughness, and higher winter albedo or freshwater discharge in the Arctic Ocean.
Francesc Montané, Andrew M. Fox, Avelino F. Arellano, Natasha MacBean, M. Ross Alexander, Alex Dye, Daniel A. Bishop, Valerie Trouet, Flurin Babst, Amy E. Hessl, Neil Pederson, Peter D. Blanken, Gil Bohrer, Christopher M. Gough, Marcy E. Litvak, Kimberly A. Novick, Richard P. Phillips, Jeffrey D. Wood, and David J. P. Moore
Geosci. Model Dev., 10, 3499–3517, https://doi.org/10.5194/gmd-10-3499-2017, https://doi.org/10.5194/gmd-10-3499-2017, 2017
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How carbon is allocated to different plant tissues (leaves, stem, and roots) determines carbon residence time and thus remains a central challenge for understanding the global carbon cycle. In this paper, we compared standard and novel carbon allocation schemes in CLM4.5 and evaluated them using eddy covariance wood and leaf biomass. The dynamic scheme based on work by Litton improved model performance, but this was dependent on model assumptions about woody turnover.
Jakob Zscheischler, Miguel D. Mahecha, Valerio Avitabile, Leonardo Calle, Nuno Carvalhais, Philippe Ciais, Fabian Gans, Nicolas Gruber, Jens Hartmann, Martin Herold, Kazuhito Ichii, Martin Jung, Peter Landschützer, Goulven G. Laruelle, Ronny Lauerwald, Dario Papale, Philippe Peylin, Benjamin Poulter, Deepak Ray, Pierre Regnier, Christian Rödenbeck, Rosa M. Roman-Cuesta, Christopher Schwalm, Gianluca Tramontana, Alexandra Tyukavina, Riccardo Valentini, Guido van der Werf, Tristram O. West, Julie E. Wolf, and Markus Reichstein
Biogeosciences, 14, 3685–3703, https://doi.org/10.5194/bg-14-3685-2017, https://doi.org/10.5194/bg-14-3685-2017, 2017
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Here we synthesize a wide range of global spatiotemporal observational data on carbon exchanges between the Earth surface and the atmosphere. A key challenge was to consistently combining observational products of terrestrial and aquatic surfaces. Our primary goal is to identify today’s key uncertainties and observational shortcomings that would need to be addressed in future measurement campaigns or expansions of in situ observatories.
Natasha MacBean, Philippe Peylin, Frédéric Chevallier, Marko Scholze, and Gregor Schürmann
Geosci. Model Dev., 9, 3569–3588, https://doi.org/10.5194/gmd-9-3569-2016, https://doi.org/10.5194/gmd-9-3569-2016, 2016
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Model projections of the response of the terrestrial biosphere to anthropogenic emissions are uncertain, in part due to unknown fixed parameters in a model. Data assimilation can address this by using observations to optimise these parameter values. Using multiple types of data is beneficial for constraining different model processes, but it can also pose challenges in a DA context. This paper demonstrates and discusses the issues involved using toy models and examples from existing literature.
Philippe Peylin, Cédric Bacour, Natasha MacBean, Sébastien Leonard, Peter Rayner, Sylvain Kuppel, Ernest Koffi, Abdou Kane, Fabienne Maignan, Frédéric Chevallier, Philippe Ciais, and Pascal Prunet
Geosci. Model Dev., 9, 3321–3346, https://doi.org/10.5194/gmd-9-3321-2016, https://doi.org/10.5194/gmd-9-3321-2016, 2016
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The study describes a carbon cycle data assimilation system that uses satellite observations of vegetation activity, net ecosystem exchange of carbon and water at many sites and atmospheric CO2 concentrations, in order to optimize the parameters of the ORCHIDEE land surface model. The optimized model is able to fit all three data streams leading to a land carbon uptake similar to independent estimates, which opens new perspectives for better prediction of the land carbon balance.
Yiying Chen, James Ryder, Vladislav Bastrikov, Matthew J. McGrath, Kim Naudts, Juliane Otto, Catherine Ottlé, Philippe Peylin, Jan Polcher, Aude Valade, Andrew Black, Jan A. Elbers, Eddy Moors, Thomas Foken, Eva van Gorsel, Vanessa Haverd, Bernard Heinesch, Frank Tiedemann, Alexander Knohl, Samuli Launiainen, Denis Loustau, Jérôme Ogée, Timo Vessala, and Sebastiaan Luyssaert
Geosci. Model Dev., 9, 2951–2972, https://doi.org/10.5194/gmd-9-2951-2016, https://doi.org/10.5194/gmd-9-2951-2016, 2016
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In this study, we compiled a set of within-canopy and above-canopy measurements of energy and water fluxes, and used these data to parametrize and validate the new multi-layer energy budget scheme for a range of forest types. An adequate parametrization approach has been presented for the global-scale land surface model (ORCHIDEE-CAN). Furthermore, model performance of the new multi-layer parametrization was compared against the existing single-layer scheme.
N. MacBean, F. Maignan, P. Peylin, C. Bacour, F.-M. Bréon, and P. Ciais
Biogeosciences, 12, 7185–7208, https://doi.org/10.5194/bg-12-7185-2015, https://doi.org/10.5194/bg-12-7185-2015, 2015
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Previous model evaluation studies have shown that terrestrial biosphere models (TBMs) need a better representation of the leaf phenology, but the model deficiency could be related to incorrect model parameters or inaccurate model structure. This paper presents a framework for optimising the parameters of phenology models that are commonly used in TBMs. It further demonstrates that the optimisation can result in changes to trends in vegetation productivity and an improvement in gross C fluxes.
B. Poulter, N. MacBean, A. Hartley, I. Khlystova, O. Arino, R. Betts, S. Bontemps, M. Boettcher, C. Brockmann, P. Defourny, S. Hagemann, M. Herold, G. Kirches, C. Lamarche, D. Lederer, C. Ottlé, M. Peters, and P. Peylin
Geosci. Model Dev., 8, 2315–2328, https://doi.org/10.5194/gmd-8-2315-2015, https://doi.org/10.5194/gmd-8-2315-2015, 2015
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Land cover is an essential variable in earth system models and determines conditions driving biogeochemical, energy and water exchange between ecosystems and the atmosphere. A methodology is presented for mapping plant functional types used in global vegetation models from a updated land cover classification system and open-source conversion tool, resulting from a consultative process among map producers and modelers engaged in the European Space Agency’s Land Cover Climate Change Initiative.
S. Kuppel, P. Peylin, F. Maignan, F. Chevallier, G. Kiely, L. Montagnani, and A. Cescatti
Geosci. Model Dev., 7, 2581–2597, https://doi.org/10.5194/gmd-7-2581-2014, https://doi.org/10.5194/gmd-7-2581-2014, 2014
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A consistent calibration of an advanced land surface model was performed by grouping in situ information on land-atmosphere exchanges of carbon and water using broad ecosystem and climate classes. Signatures of improved carbon cycle simulations were found across spatial and temporal scales, along with insights into current model limitations. These results hold promising perspectives within the ongoing efforts towards building robust model-data fusion frameworks for earth system models.
K. Gribanov, J. Jouzel, V. Bastrikov, J.-L. Bonne, F.-M. Breon, M. Butzin, O. Cattani, V. Masson-Delmotte, N. Rokotyan, M. Werner, and V. Zakharov
Atmos. Chem. Phys., 14, 5943–5957, https://doi.org/10.5194/acp-14-5943-2014, https://doi.org/10.5194/acp-14-5943-2014, 2014
S. Kuppel, F. Chevallier, and P. Peylin
Geosci. Model Dev., 6, 45–55, https://doi.org/10.5194/gmd-6-45-2013, https://doi.org/10.5194/gmd-6-45-2013, 2013
Related subject area
Biogeosciences
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
Parameterisation toolbox for physical-biogeochemical model compatible with FABM. Case study: the coupled 1D GOTM-ECOSMO E2E for the Sylt-Romo Bight, North Sea
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
China Wildfire Emission (ChinaWED v1) for the period 2012–2022
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
H2MV (v1.0): Global Physically-Constrained Deep Learning Water Cycle Model with Vegetation
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Alquimia v1.0: A generic interface to biogeochemical codes – A tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
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When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-223, https://doi.org/10.5194/gmd-2024-223, 2024
Revised manuscript accepted for GMD
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions have changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Hoa T. T. Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2024-2710, https://doi.org/10.5194/egusphere-2024-2710, 2024
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Parameterisation is key in modeling to reproduce observations well but is often done manually. This study presents a Particle Swarm Optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, thus providing different insights into ecosystem dynamics, (2) optimized model complexity.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
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We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-170, https://doi.org/10.5194/gmd-2024-170, 2024
Revised manuscript accepted for GMD
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Wildfires release large amounts of greenhouse gases, contributing to global warming. We developed a new model that provides near-real-time estimates of wildfire emissions in China. Our model improves the accuracy of burned area measurements and incorporates advanced data in fuel loads and emission factors. We found that most emissions come from agricultural fires, while emissions from forests and grasslands are decreasing. This model will help reduce the environmental impacts of wildfires.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
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Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
EGUsphere, https://doi.org/10.5194/egusphere-2024-2044, https://doi.org/10.5194/egusphere-2024-2044, 2024
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We use an innovative approach to study the Earth's water cycle by blending advanced computer learning techniques with a traditional water cycle model. We developed a model that learns from meteorological data, with a special focus on understanding how vegetation influences water movement. Our model closely aligns with real-world observations, yet there are areas that need improvement. This study opens up new possibilities to better understand the water cycle and its interactions with vegetation.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
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This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Sergi Molins, Benjamin Andre, Jeffrey Johnson, Glenn Hammond, Benjamin Sulman, Konstantin Lipnikov, Marcus Day, James Beisman, Daniil Svyatsky, Hang Deng, Peter Lichtner, Carl Steefel, and David Moulton
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-108, https://doi.org/10.5194/gmd-2024-108, 2024
Revised manuscript accepted for GMD
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1360, https://doi.org/10.5194/egusphere-2024-1360, 2024
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, crucial for understanding their role in the global carbon cycle. By analyzing over 22,000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate the top 10 cm of ocean sediments hold about 171 petagrams of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
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Short summary
In this study, we compare different methods for optimising parameters of the ORCHIDEE land surface model (LSM) using in situ observations. We use two minimisation methods - local gradient-based and global random search - applied either at each individual site or a group of sites characterised by one plant functional type. We demonstrate the advantages and challenges of different techniques and provide some advice on using it for the LSM parameters optimisation.
In this study, we compare different methods for optimising parameters of the ORCHIDEE land...
