Articles | Volume 9, issue 12
https://doi.org/10.5194/gmd-9-4405-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-9-4405-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
07 Dec 2016
Model description paper |
| 07 Dec 2016
Terrestrial ecosystem process model Biome-BGCMuSo v4.0: summary of improvements and new modeling possibilities
Dóra Hidy
CORRESPONDING AUTHOR
MTA-SZIE Plant Ecology Research Group, Szent István University,
Páter K. u.1., 2103 Gödöllő, Hungary
Zoltán Barcza
Department of Meteorology, Eötvös Loránd University,
Pázmány P. sétány 1/A., 1117 Budapest, Hungary
Hrvoje Marjanović
Croatian Forest Research Institute, Department for Forest Management
and Forestry Economics, Cvjetno naselje 41, 10450 Jastrebarsko, Croatia
Maša Zorana Ostrogović Sever
Croatian Forest Research Institute, Department for Forest Management
and Forestry Economics, Cvjetno naselje 41, 10450 Jastrebarsko, Croatia
Laura Dobor
Department of Meteorology, Eötvös Loránd University,
Pázmány P. sétány 1/A., 1117 Budapest, Hungary
Czech University of Life Sciences, Faculty of Forestry and Wood Sciences, Department of Forest Protection and Entomology, Kamýcká 129, 165 21 Prague 6, Czech Republic
Györgyi Gelybó
Institute for Soil Sciences and Agricultural Chemistry, Centre for
Agricultural Research, Hungarian Academy of Sciences, Herman O. út 15.,
1163 Budapest, Hungary
Nándor Fodor
Agricultural Institute, Centre for Agricultural Research, Hungarian
Academy of Sciences, Brunszvik u. 2., 2462 Martonvásár, Hungary
Krisztina Pintér
MTA-SZIE Plant Ecology Research Group, Szent István University,
Páter K. u.1., 2103 Gödöllő, Hungary
Galina Churkina
Institute for Advanced Sustainability Studies e.V., Berliner Strasse
130, 14467 Potsdam, Germany
Geography Department, Humboldt University of Berlin, Berlin, Germany
Steven Running
Numerical Terradynamic Simulation Group, Department of Ecosystem and
Conservation Sciences University of Montana, Missoula, MT 59812, USA
Peter Thornton
Climate Change Science Institute/Environmental Sciences Division,
Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
Gianni Bellocchi
UREP, INRA, 63000 Clermont-Ferrand, France
László Haszpra
Hungarian Meteorological Service, P.O. Box 39, 1675 Budapest,
Hungary
Geodetic and Geophysical Institute, MTA Research Centre for
Astronomy and Earth Sciences, Csatkai Endre utca 6-8, 9400 Sopron, Hungary
Ferenc Horváth
Institute of Ecology and Botany, Centre for Ecological Research,
Hungarian Academy of Sciences, Alkotmány u. 2-4., 2163
Vácrátót, Hungary
Andrew Suyker
School of Natural Resources, University of Nebraska-Lincoln, 806
Hardin Hall, Lincoln, NE 68588, USA
Zoltán Nagy
MTA-SZIE Plant Ecology Research Group, Szent István University,
Páter K. u.1., 2103 Gödöllő, Hungary
Related authors
Beata Bukosa, Sara Mikaloff-Fletcher, Gordon Brailsford, Dan Smale, Elizabeth D. Keller, W. Troy Baisden, Miko U. F. Kirschbaum, Donna L. Giltrap, Lìyı̌n Liáng, Stuart Moore, Rowena Moss, Sylvia Nichol, Jocelyn Turnbull, Alex Geddes, Daemon Kennett, Dora Hidy, Zoltán Barcza, Louis A. Schipper, Aaron M. Wall, Shin-Ichiro Nakaoka, Hitoshi Mukai, and Andrea Brandon
EGUsphere, https://doi.org/10.5194/egusphere-2024-3866, https://doi.org/10.5194/egusphere-2024-3866, 2025
Short summary
Short summary
We used atmospheric measurements and inverse modeling to estimate New Zealand's carbon dioxide (CO₂) emissions and removals from 2011 to 2020. Our study reveals that New Zealand's land absorbs more CO₂ than previously estimated, particularly in areas dominated by indigenous forests. Our results highlight gaps in current national CO₂ estimates and methods, suggesting a need for further research to improve emissions reporting and refine approaches to track progress toward climate mitigation goals.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
Short summary
Short summary
We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
Short summary
Short summary
Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Junyan Ding, Nate McDowell, Vanessa Bailey, Nate Conroy, Donnie J. Day, Yilin Fang, Kenneth M. Kemner, Matthew L. Kirwan, Charlie D. Koven, Matthew Kovach, Patrick Megonigal, Kendalynn A. Morris, Teri O’Meara, Stephanie C. Pennington, Roberta B. Peixoto, Peter Thornton, Mike Weintraub, Peter Regier, Leticia Sandoval, Fausto Machado-Silva, Alice Stearns, Nick Ward, and Stephanie J. Wilson
EGUsphere, https://doi.org/10.5194/egusphere-2025-1544, https://doi.org/10.5194/egusphere-2025-1544, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
We used a vegetation model to study why coastal forests are dying due to rising water levels and what happens to the ecosystem when marshes take over. We found that tree death is mainly caused by water-damaged roots, leading to major changes in the environment, such as reduced water use and carbon storage. Our study helps explain how coastal ecosystems are shifting and offers new ideas to explore in future field research.
Beata Bukosa, Sara Mikaloff-Fletcher, Gordon Brailsford, Dan Smale, Elizabeth D. Keller, W. Troy Baisden, Miko U. F. Kirschbaum, Donna L. Giltrap, Lìyı̌n Liáng, Stuart Moore, Rowena Moss, Sylvia Nichol, Jocelyn Turnbull, Alex Geddes, Daemon Kennett, Dora Hidy, Zoltán Barcza, Louis A. Schipper, Aaron M. Wall, Shin-Ichiro Nakaoka, Hitoshi Mukai, and Andrea Brandon
EGUsphere, https://doi.org/10.5194/egusphere-2024-3866, https://doi.org/10.5194/egusphere-2024-3866, 2025
Short summary
Short summary
We used atmospheric measurements and inverse modeling to estimate New Zealand's carbon dioxide (CO₂) emissions and removals from 2011 to 2020. Our study reveals that New Zealand's land absorbs more CO₂ than previously estimated, particularly in areas dominated by indigenous forests. Our results highlight gaps in current national CO₂ estimates and methods, suggesting a need for further research to improve emissions reporting and refine approaches to track progress toward climate mitigation goals.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
Short summary
Short summary
We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
László Haszpra
Atmos. Meas. Tech., 17, 4629–4647, https://doi.org/10.5194/amt-17-4629-2024, https://doi.org/10.5194/amt-17-4629-2024, 2024
Short summary
Short summary
The paper evaluates a 30-year-long atmospheric CO2 data series from a mid-continental central European site, Hegyhátsál (HUN). It presents the site-specific features observed in the long-term evolution of the atmospheric CO2 concentration. Since the measurement data are widely used in atmospheric inverse models and budget calculations all around the world, the paper provides potentially valuable information for model tuning and interpretation of the model results.
Lingbo Li, Hong-Yi Li, Guta Abeshu, Jinyun Tang, L. Ruby Leung, Chang Liao, Zeli Tan, Hanqin Tian, Peter Thornton, and Xiaojuan Yang
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-43, https://doi.org/10.5194/essd-2024-43, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
We have developed a new map that reveals how organic carbon from soil leaches into headwater streams over the contiguous United States. We use advanced artificial intelligence techniques and a massive amount of data, including observations at over 2,500 gauges and a wealth of climate and environmental information. The map is a critical step in understanding and predicting how carbon moves through our environment, hence a useful tool for tackling climate challenges.
Xiaojuan Yang, Peter Thornton, Daniel Ricciuto, Yilong Wang, and Forrest Hoffman
Biogeosciences, 20, 2813–2836, https://doi.org/10.5194/bg-20-2813-2023, https://doi.org/10.5194/bg-20-2813-2023, 2023
Short summary
Short summary
We evaluated the performance of a land surface model (ELMv1-CNP) that includes both nitrogen (N) and phosphorus (P) limitation on carbon cycle processes. We show that ELMv1-CNP produces realistic estimates of present-day carbon pools and fluxes. We show that global C sources and sinks are significantly affected by P limitation. Our study suggests that introduction of P limitation in land surface models is likely to have substantial consequences for projections of future carbon uptake.
László Haszpra, Zoltán Barcza, Zita Ferenczi, Roland Hollós, Anikó Kern, and Natascha Kljun
Atmos. Meas. Tech., 15, 5019–5031, https://doi.org/10.5194/amt-15-5019-2022, https://doi.org/10.5194/amt-15-5019-2022, 2022
Short summary
Short summary
A novel approach is used for the determination of greenhouse gas (GHG) emissions of small rural settlements, which may significantly differ from those of urban regions and have hardly been studied yet. Among other results, it turned out that wintertime nitrous oxide emission is significantly underestimated in the official emission inventories. Given the large number of such settlements, the underestimation may also distort the national total emission values reported to international databases.
Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
Short summary
Short summary
Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Xinhua Zhou, Tian Gao, Eugene S. Takle, Xiaojie Zhen, Andrew E. Suyker, Tala Awada, Jane Okalebo, and Jiaojun Zhu
Atmos. Meas. Tech., 15, 95–115, https://doi.org/10.5194/amt-15-95-2022, https://doi.org/10.5194/amt-15-95-2022, 2022
Short summary
Short summary
Air temperature from sonic temperature and air moisture has been used without an exact equation. We present an exact equation of such air temperature for closed-path eddy-covariance flux measurements. Air temperature from this equation is equivalent to sonic temperature in its accuracy and frequency response. It is a choice for advanced flux topics because, with it, thermodynamic variables in the flux measurements can be temporally synchronized and spatially matched at measurement scales.
Daniel M. Ricciuto, Xiaojuan Yang, Dali Wang, and Peter E. Thornton
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-163, https://doi.org/10.5194/bg-2021-163, 2021
Publication in BG not foreseen
Short summary
Short summary
This paper uses a novel approach to quantify the impacts of the choice of decomposition model on carbon and nitrogen cycling. We compare the models to experimental data that examined litter decomposition over five different biomes. Despite widely differing assumptions, the models produce similar patterns of decomposition when nutrients are limiting. This differs from past analyses that did not consider the impacts of changing environmental conditions or nutrients.
László Haszpra and Ernő Prácser
Atmos. Meas. Tech., 14, 3561–3571, https://doi.org/10.5194/amt-14-3561-2021, https://doi.org/10.5194/amt-14-3561-2021, 2021
Short summary
Short summary
Most of the tall-tower greenhouse gas observatories apply a single gas analyzer for the sequential sampling of several intakes along the tower. The non-continuous sampling at each intake introduces excess uncertainty to the calculated hourly-average concentrations used in several applications. Based on real-world measurements, the paper systematically assesses this type of uncertainty.
Imre Salma, Wanda Thén, Pasi Aalto, Veli-Matti Kerminen, Anikó Kern, Zoltán Barcza, Tuukka Petäjä, and Markku Kulmala
Atmos. Chem. Phys., 21, 2861–2880, https://doi.org/10.5194/acp-21-2861-2021, https://doi.org/10.5194/acp-21-2861-2021, 2021
Short summary
Short summary
The distribution of the monthly mean nucleation frequency possessed a characteristic pattern. Its shape was compared to those of environmental variables, including vegetation-derived properties. The spring maximum in the occurrence frequency often overlapped with the positive T anomaly. The link between the heat stress and the occurrence minimum in summer could not be proven, whereas an association between the occurrence frequency and vegetation growth dynamics was clearly identified in spring.
Shamil Maksyutov, Tomohiro Oda, Makoto Saito, Rajesh Janardanan, Dmitry Belikov, Johannes W. Kaiser, Ruslan Zhuravlev, Alexander Ganshin, Vinu K. Valsala, Arlyn Andrews, Lukasz Chmura, Edward Dlugokencky, László Haszpra, Ray L. Langenfelds, Toshinobu Machida, Takakiyo Nakazawa, Michel Ramonet, Colm Sweeney, and Douglas Worthy
Atmos. Chem. Phys., 21, 1245–1266, https://doi.org/10.5194/acp-21-1245-2021, https://doi.org/10.5194/acp-21-1245-2021, 2021
Short summary
Short summary
In order to improve the top-down estimation of the anthropogenic greenhouse gas emissions, a high-resolution inverse modelling technique was developed for applications to global transport modelling of carbon dioxide and other greenhouse gases. A coupled Eulerian–Lagrangian transport model and its adjoint are combined with surface fluxes at 0.1° resolution to provide high-resolution forward simulation and inverse modelling of surface fluxes accounting for signals from emission hot spots.
Xiaoying Shi, Daniel M. Ricciuto, Peter E. Thornton, Xiaofeng Xu, Fengming Yuan, Richard J. Norby, Anthony P. Walker, Jeffrey M. Warren, Jiafu Mao, Paul J. Hanson, Lin Meng, David Weston, and Natalie A. Griffiths
Biogeosciences, 18, 467–486, https://doi.org/10.5194/bg-18-467-2021, https://doi.org/10.5194/bg-18-467-2021, 2021
Short summary
Short summary
The Sphagnum mosses are the important species of a wetland ecosystem. To better represent the peatland ecosystem, we introduced the moss species to the land model component (ELM) of the Energy Exascale Earth System Model (E3SM) by developing water content dynamics and nonvascular photosynthetic processes for moss. We tested the model against field observations and used the model to make projections of the site's carbon cycle under warming and atmospheric CO2 concentration scenarios.
George C. Hurtt, Louise Chini, Ritvik Sahajpal, Steve Frolking, Benjamin L. Bodirsky, Katherine Calvin, Jonathan C. Doelman, Justin Fisk, Shinichiro Fujimori, Kees Klein Goldewijk, Tomoko Hasegawa, Peter Havlik, Andreas Heinimann, Florian Humpenöder, Johan Jungclaus, Jed O. Kaplan, Jennifer Kennedy, Tamás Krisztin, David Lawrence, Peter Lawrence, Lei Ma, Ole Mertz, Julia Pongratz, Alexander Popp, Benjamin Poulter, Keywan Riahi, Elena Shevliakova, Elke Stehfest, Peter Thornton, Francesco N. Tubiello, Detlef P. van Vuuren, and Xin Zhang
Geosci. Model Dev., 13, 5425–5464, https://doi.org/10.5194/gmd-13-5425-2020, https://doi.org/10.5194/gmd-13-5425-2020, 2020
Short summary
Short summary
To estimate the effects of human land use activities on the carbon–climate system, a new set of global gridded land use forcing datasets was developed to link historical land use data to eight future scenarios in a standard format required by climate models. This new generation of land use harmonization (LUH2) includes updated inputs, higher spatial resolution, more detailed land use transitions, and the addition of important agricultural management layers; it will be used for CMIP6 simulations.
Łukasz Chmura, Michał Gałkowski, Piotr Sekuła, Mirosław Zimnoch, Jarosław Nęcki, Jakub Bartyzel, Damian Zięba, Kazimierz Różański, Wojciech Wołkowicz, and Laszlo Haszpra
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2019-748, https://doi.org/10.5194/acp-2019-748, 2019
Revised manuscript not accepted
Short summary
Short summary
The rise of temperatures across the globe, mainly attributed to the anthropogenic emissions of greenhouse gases, is predicted to have an increased impact on ecosystems over the next century. One of the manifestations of this anthropogenic global warming will be the increased occurrence of prolonged droughts in the temperate climate zones. In the current study we present the evidence of an increased impact of droughts on the annual cycle of carbon dioxide over Central-Eastern Europe.
Jianqiu Zheng, Peter E. Thornton, Scott L. Painter, Baohua Gu, Stan D. Wullschleger, and David E. Graham
Biogeosciences, 16, 663–680, https://doi.org/10.5194/bg-16-663-2019, https://doi.org/10.5194/bg-16-663-2019, 2019
Short summary
Short summary
Arctic warming exposes soil carbon to increased degradation, increasing CO2 and CH4 emissions. Models underrepresent anaerobic decomposition that predominates wet soils. We simulated microbial growth, pH regulation, and anaerobic carbon decomposition in a new model, parameterized and validated with prior soil incubation data. The model accurately simulated CO2 production and strong influences of water content, pH, methanogen biomass, and competing electron acceptors on CH4 production.
Peter Bergamaschi, Ute Karstens, Alistair J. Manning, Marielle Saunois, Aki Tsuruta, Antoine Berchet, Alexander T. Vermeulen, Tim Arnold, Greet Janssens-Maenhout, Samuel Hammer, Ingeborg Levin, Martina Schmidt, Michel Ramonet, Morgan Lopez, Jost Lavric, Tuula Aalto, Huilin Chen, Dietrich G. Feist, Christoph Gerbig, László Haszpra, Ove Hermansen, Giovanni Manca, John Moncrieff, Frank Meinhardt, Jaroslaw Necki, Michal Galkowski, Simon O'Doherty, Nina Paramonova, Hubertus A. Scheeren, Martin Steinbacher, and Ed Dlugokencky
Atmos. Chem. Phys., 18, 901–920, https://doi.org/10.5194/acp-18-901-2018, https://doi.org/10.5194/acp-18-901-2018, 2018
Short summary
Short summary
European methane (CH4) emissions are estimated for 2006–2012 using atmospheric in situ measurements from 18 European monitoring stations and 7 different inverse models. Our analysis highlights the potential significant contribution of natural emissions from wetlands (including peatlands and wet soils) to the total European emissions. The top-down estimates of total EU-28 CH4 emissions are broadly consistent with the sum of reported anthropogenic CH4 emissions and the estimated natural emissions.
Henrique F. Duarte, Brett M. Raczka, Daniel M. Ricciuto, John C. Lin, Charles D. Koven, Peter E. Thornton, David R. Bowling, Chun-Ta Lai, Kenneth J. Bible, and James R. Ehleringer
Biogeosciences, 14, 4315–4340, https://doi.org/10.5194/bg-14-4315-2017, https://doi.org/10.5194/bg-14-4315-2017, 2017
Short summary
Short summary
We evaluate the Community Land Model (CLM4.5) against observations at an old-growth coniferous forest site that is subjected to water stress each summer. We found that, after calibration, CLM was able to reasonably simulate the observed fluxes of energy and carbon, carbon stocks, carbon isotope ratios, and ecosystem response to water stress. This study demonstrates that carbon isotopes can expose structural weaknesses in CLM and provide a key constraint that may guide future model development.
Foad Foolad, Trenton E. Franz, Tiejun Wang, Justin Gibson, Ayse Kilic, Richard G. Allen, and Andrew Suyker
Hydrol. Earth Syst. Sci., 21, 1263–1277, https://doi.org/10.5194/hess-21-1263-2017, https://doi.org/10.5194/hess-21-1263-2017, 2017
Short summary
Short summary
Estimates of evapotranspiration are vital for validation of models. However, those datasets are often limited to research applications. Here, we explore using vadose zone modeling with widespread and readily available soil water content monitoring networks. While this work focused on one agricultural site, the framework can be used everywhere there is basic data. The resulting evapotranspiration and soil water content measurements are valuable benchmarks for evaluation of land surface models.
Jitendra Kumar, Nathan Collier, Gautam Bisht, Richard T. Mills, Peter E. Thornton, Colleen M. Iversen, and Vladimir Romanovsky
The Cryosphere, 10, 2241–2274, https://doi.org/10.5194/tc-10-2241-2016, https://doi.org/10.5194/tc-10-2241-2016, 2016
Short summary
Short summary
Microtopography of the low-gradient polygonal tundra plays a critical role in these ecosystem; however, patterns and drivers are poorly understood. A modeling-based approach was developed in this study to characterize and represent the permafrost soils in the model and simulate the thermal dynamics using a mechanistic high-resolution model. Results shows the ability of the model to simulate the patterns and variability of thermal regimes and improve our understanding of polygonal tundra.
János Balogh, Marianna Papp, Krisztina Pintér, Szilvia Fóti, Katalin Posta, Werner Eugster, and Zoltán Nagy
Biogeosciences, 13, 5171–5182, https://doi.org/10.5194/bg-13-5171-2016, https://doi.org/10.5194/bg-13-5171-2016, 2016
Short summary
Short summary
In the dry grassland investigated in this study the components of the soil CO2 efflux decreased at different rates under drought conditions. During drought the contribution made by the heterotrophic components was the highest and the rhizospheric component was the most sensitive to soil drying. According to our results, the heterotrophic component of soil respiration is the major contributor to the respiration activities during drought events.
William Alexander Avery, Catherine Finkenbiner, Trenton E. Franz, Tiejun Wang, Anthony L. Nguy-Robertson, Andrew Suyker, Timothy Arkebauer, and Francisco Muñoz-Arriola
Hydrol. Earth Syst. Sci., 20, 3859–3872, https://doi.org/10.5194/hess-20-3859-2016, https://doi.org/10.5194/hess-20-3859-2016, 2016
Short summary
Short summary
Here we present a strategy to use globally available datasets in the calibration function used to convert observed moderated neutron counts into volumetric soil water content. While local sampling protocols are well documented for fixed probes, the use of roving probes presents new calibration challenges. With over 200 fixed probes and 10 roving probes in use globally, we anticipate this paper will serve as a keystone for the growing cosmic-ray neutron probe and hydrologic community.
Brett Raczka, Henrique F. Duarte, Charles D. Koven, Daniel Ricciuto, Peter E. Thornton, John C. Lin, and David R. Bowling
Biogeosciences, 13, 5183–5204, https://doi.org/10.5194/bg-13-5183-2016, https://doi.org/10.5194/bg-13-5183-2016, 2016
Short summary
Short summary
We use carbon isotopes of CO2 to improve the performance of a land surface model, a component with earth system climate models. We found that isotope observations can provide important information related to the exchange of carbon and water from vegetation driven by environmental stress from low atmospheric moisture and nitrogen limitation. It follows that isotopes have a unique potential to improve model performance and provide insight into land surface model development.
Guoping Tang, Jianqiu Zheng, Xiaofeng Xu, Ziming Yang, David E. Graham, Baohua Gu, Scott L. Painter, and Peter E. Thornton
Biogeosciences, 13, 5021–5041, https://doi.org/10.5194/bg-13-5021-2016, https://doi.org/10.5194/bg-13-5021-2016, 2016
Short summary
Short summary
We extend the Community Land Model coupled with carbon and nitrogen (CLM-CN) decomposition cascade to include simple organic substrate turnover, fermentation, Fe(III) reduction, and methanogenesis reactions, and assess the efficacy of various temperature and pH response functions. Incorporating the Windermere Humic Aqueous Model (WHAM) describes the observed pH evolution. Fe reduction can increase pH toward neutral pH to facilitate methanogenesis.
Xiaofeng Xu, Fengming Yuan, Paul J. Hanson, Stan D. Wullschleger, Peter E. Thornton, William J. Riley, Xia Song, David E. Graham, Changchun Song, and Hanqin Tian
Biogeosciences, 13, 3735–3755, https://doi.org/10.5194/bg-13-3735-2016, https://doi.org/10.5194/bg-13-3735-2016, 2016
Short summary
Short summary
Accurately projecting future climate change requires a good methane modeling. However, how good the current models are and what are the key improvements needed remain unclear. This paper reviews the 40 published methane models to characterize the strengths and weakness of current methane models and further lay out the roadmap for future model improvements.
Boris Bonn, Erika von Schneidemesser, Dorota Andrich, Jörn Quedenau, Holger Gerwig, Anja Lüdecke, Jürgen Kura, Axel Pietsch, Christian Ehlers, Dieter Klemp, Claudia Kofahl, Rainer Nothard, Andreas Kerschbaumer, Wolfgang Junkermann, Rüdiger Grote, Tobias Pohl, Konradin Weber, Birgit Lode, Philipp Schönberger, Galina Churkina, Tim M. Butler, and Mark G. Lawrence
Atmos. Chem. Phys., 16, 7785–7811, https://doi.org/10.5194/acp-16-7785-2016, https://doi.org/10.5194/acp-16-7785-2016, 2016
Short summary
Short summary
The distribution of air pollutants (gases and particles) have been investigated in different environments in Potsdam, Germany. Remarkable variations of the pollutants have been observed for distances of tens of meters by bicycles, vans and aircraft. Vegetated areas caused reductions depending on the pollutants, the vegetation type and dimensions. Our measurements show the pollutants to be of predominantly local origin, resulting in a huge challenge for common models to resolve.
Guoping Tang, Fengming Yuan, Gautam Bisht, Glenn E. Hammond, Peter C. Lichtner, Jitendra Kumar, Richard T. Mills, Xiaofeng Xu, Ben Andre, Forrest M. Hoffman, Scott L. Painter, and Peter E. Thornton
Geosci. Model Dev., 9, 927–946, https://doi.org/10.5194/gmd-9-927-2016, https://doi.org/10.5194/gmd-9-927-2016, 2016
Short summary
Short summary
We demonstrate that CLM-PFLOTRAN predictions are consistent with CLM4.5 for Arctic, temperate, and tropical sites. A tight relative tolerance may be needed to avoid false convergence when scaling, clipping, or log transformation is used to avoid negative concentration in implicit time stepping and Newton-Raphson methods. The log transformation method is accurate and robust while relaxing relative tolerance or using the clipping or scaling method can result in efficient solutions.
J. Mao, D. M. Ricciuto, P. E. Thornton, J. M. Warren, A. W. King, X. Shi, C. M. Iversen, and R. J. Norby
Biogeosciences, 13, 641–657, https://doi.org/10.5194/bg-13-641-2016, https://doi.org/10.5194/bg-13-641-2016, 2016
Short summary
Short summary
The aim of this study is to implement, calibrate and evaluate the CLM4 against carbon and hydrology observations from a shading and labeling experiment in a stand of young loblolly pines. We found a combination of parameters measured on-site and calibration targeting biomass, transpiration, and 13C discrimination gave good agreement with pretreatment measurements. We also used observations from the experiment to develop a conceptual model of short-term photosynthate storage and transport.
X. Shi, P. E. Thornton, D. M. Ricciuto, P. J. Hanson, J. Mao, S. D. Sebestyen, N. A. Griffiths, and G. Bisht
Biogeosciences, 12, 6463–6477, https://doi.org/10.5194/bg-12-6463-2015, https://doi.org/10.5194/bg-12-6463-2015, 2015
W. D. Collins, A. P. Craig, J. E. Truesdale, A. V. Di Vittorio, A. D. Jones, B. Bond-Lamberty, K. V. Calvin, J. A. Edmonds, S. H. Kim, A. M. Thomson, P. Patel, Y. Zhou, J. Mao, X. Shi, P. E. Thornton, L. P. Chini, and G. C. Hurtt
Geosci. Model Dev., 8, 2203–2219, https://doi.org/10.5194/gmd-8-2203-2015, https://doi.org/10.5194/gmd-8-2203-2015, 2015
Short summary
Short summary
The integrated Earth system model (iESM) has been developed as a
new tool for projecting the joint human-climate system. The
iESM is based upon coupling an integrated assessment model (IAM)
and an Earth system model (ESM) into a common modeling
infrastructure. By introducing heretofore-omitted
feedbacks between natural and societal drivers in iESM, we can improve
scientific understanding of the human-Earth system
dynamics.
C. Safta, D. M. Ricciuto, K. Sargsyan, B. Debusschere, H. N. Najm, M. Williams, and P. E. Thornton
Geosci. Model Dev., 8, 1899–1918, https://doi.org/10.5194/gmd-8-1899-2015, https://doi.org/10.5194/gmd-8-1899-2015, 2015
Short summary
Short summary
In this paper we propose a probabilistic framework for an uncertainty quantification study of a carbon cycle model and focus on the comparison between steady-state and transient
simulation setups. We study model parameters via global sensitivity analysis and employ a Bayesian approach to calibrate these parameters using NEE observations at the Harvard Forest site. The calibration results are then used to assess the predictive skill of the model via posterior predictive checks.
L. Haszpra, Z. Barcza, T. Haszpra, Zs. Pátkai, and K. J. Davis
Atmos. Meas. Tech., 8, 1657–1671, https://doi.org/10.5194/amt-8-1657-2015, https://doi.org/10.5194/amt-8-1657-2015, 2015
A. V. Di Vittorio, L. P. Chini, B. Bond-Lamberty, J. Mao, X. Shi, J. Truesdale, A. Craig, K. Calvin, A. Jones, W. D. Collins, J. Edmonds, G. C. Hurtt, P. Thornton, and A. Thomson
Biogeosciences, 11, 6435–6450, https://doi.org/10.5194/bg-11-6435-2014, https://doi.org/10.5194/bg-11-6435-2014, 2014
Short summary
Short summary
Economic models provide scenarios of land use and greenhouse gas emissions to earth system models to project global change. We found, and partially addressed, inconsistencies in land cover between an economic and an earth system model that effectively alter a prescribed scenario, causing significant differences in projected terrestrial carbon and atmospheric CO2 between prescribed and altered scenarios. We outline a solution to this current problem in scenario-based global change projections.
B. Bond-Lamberty, K. Calvin, A. D. Jones, J. Mao, P. Patel, X. Y. Shi, A. Thomson, P. Thornton, and Y. Zhou
Geosci. Model Dev., 7, 2545–2555, https://doi.org/10.5194/gmd-7-2545-2014, https://doi.org/10.5194/gmd-7-2545-2014, 2014
R. L. Thompson, K. Ishijima, E. Saikawa, M. Corazza, U. Karstens, P. K. Patra, P. Bergamaschi, F. Chevallier, E. Dlugokencky, R. G. Prinn, R. F. Weiss, S. O'Doherty, P. J. Fraser, L. P. Steele, P. B. Krummel, A. Vermeulen, Y. Tohjima, A. Jordan, L. Haszpra, M. Steinbacher, S. Van der Laan, T. Aalto, F. Meinhardt, M. E. Popa, J. Moncrieff, and P. Bousquet
Atmos. Chem. Phys., 14, 6177–6194, https://doi.org/10.5194/acp-14-6177-2014, https://doi.org/10.5194/acp-14-6177-2014, 2014
X. Yang, P. E. Thornton, D. M. Ricciuto, and W. M. Post
Biogeosciences, 11, 1667–1681, https://doi.org/10.5194/bg-11-1667-2014, https://doi.org/10.5194/bg-11-1667-2014, 2014
G. Broquet, F. Chevallier, F.-M. Bréon, N. Kadygrov, M. Alemanno, F. Apadula, S. Hammer, L. Haszpra, F. Meinhardt, J. A. Morguí, J. Necki, S. Piacentino, M. Ramonet, M. Schmidt, R. L. Thompson, A. T. Vermeulen, C. Yver, and P. Ciais
Atmos. Chem. Phys., 13, 9039–9056, https://doi.org/10.5194/acp-13-9039-2013, https://doi.org/10.5194/acp-13-9039-2013, 2013
X. Yang, W. M. Post, P. E. Thornton, and A. Jain
Biogeosciences, 10, 2525–2537, https://doi.org/10.5194/bg-10-2525-2013, https://doi.org/10.5194/bg-10-2525-2013, 2013
T. W. Hudiburg, B. E. Law, and P. E. Thornton
Biogeosciences, 10, 453–470, https://doi.org/10.5194/bg-10-453-2013, https://doi.org/10.5194/bg-10-453-2013, 2013
Related subject area
Biogeosciences
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
Parameterisation toolbox for physical-biogeochemical model compatible with FABM. Case study: the coupled 1D GOTM-ECOSMO E2E for the Sylt-Romo Bight, North Sea
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
China Wildfire Emission (ChinaWED v1) for the period 2012–2022
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
H2MV (v1.0): Global Physically-Constrained Deep Learning Water Cycle Model with Vegetation
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Alquimia v1.0: A generic interface to biogeochemical codes – A tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
Short summary
Short summary
Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
Short summary
Short summary
Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
Short summary
Short summary
When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
Short summary
Short summary
Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
Short summary
Short summary
We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
Short summary
Short summary
Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
Short summary
Short summary
Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
Short summary
Short summary
Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-223, https://doi.org/10.5194/gmd-2024-223, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions have changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
Short summary
Short summary
The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
Short summary
Short summary
In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
Short summary
Short summary
The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
Short summary
Short summary
A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
Short summary
Short summary
This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
Short summary
Short summary
We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
Short summary
Short summary
Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
Short summary
Short summary
We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Hoa T. T. Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2024-2710, https://doi.org/10.5194/egusphere-2024-2710, 2024
Short summary
Short summary
Parameterisation is key in modeling to reproduce observations well but is often done manually. This study presents a Particle Swarm Optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, thus providing different insights into ecosystem dynamics, (2) optimized model complexity.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
Short summary
Short summary
We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-170, https://doi.org/10.5194/gmd-2024-170, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Wildfires release large amounts of greenhouse gases, contributing to global warming. We developed a new model that provides near-real-time estimates of wildfire emissions in China. Our model improves the accuracy of burned area measurements and incorporates advanced data in fuel loads and emission factors. We found that most emissions come from agricultural fires, while emissions from forests and grasslands are decreasing. This model will help reduce the environmental impacts of wildfires.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
EGUsphere, https://doi.org/10.5194/egusphere-2024-2044, https://doi.org/10.5194/egusphere-2024-2044, 2024
Short summary
Short summary
We use an innovative approach to study the Earth's water cycle by blending advanced computer learning techniques with a traditional water cycle model. We developed a model that learns from meteorological data, with a special focus on understanding how vegetation influences water movement. Our model closely aligns with real-world observations, yet there are areas that need improvement. This study opens up new possibilities to better understand the water cycle and its interactions with vegetation.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
Short summary
Short summary
Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
Short summary
Short summary
The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
Short summary
Short summary
Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
Short summary
Short summary
In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Sergi Molins, Benjamin Andre, Jeffrey Johnson, Glenn Hammond, Benjamin Sulman, Konstantin Lipnikov, Marcus Day, James Beisman, Daniil Svyatsky, Hang Deng, Peter Lichtner, Carl Steefel, and David Moulton
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-108, https://doi.org/10.5194/gmd-2024-108, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
Short summary
Short summary
A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
Short summary
Short summary
We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
Short summary
Short summary
To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
Short summary
Short summary
This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
Short summary
Short summary
Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
Short summary
Short summary
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1360, https://doi.org/10.5194/egusphere-2024-1360, 2024
Short summary
Short summary
Our research uses deep learning to predict organic carbon stocks in ocean sediments, crucial for understanding their role in the global carbon cycle. By analyzing over 22,000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate the top 10 cm of ocean sediments hold about 171 petagrams of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
Short summary
Short summary
Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
Short summary
Short summary
Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
Short summary
Short summary
Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
Short summary
Short summary
We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
Short summary
Short summary
By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
Short summary
Short summary
Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
Short summary
Short summary
Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
Short summary
Short summary
Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
Short summary
Short summary
By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
Short summary
Short summary
Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
Short summary
Short summary
Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
Short summary
Short summary
To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
Short summary
Short summary
Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Cited articles
Ahlström, A., Raupach, M. R., Schurgers, G., Smith, B., Arneth, A., Jung, M., Reichstein, M., Canadell, J. G., Friedlingstein, P., Jain, A. K., Kato, E., Poulter, B., Sitch, S., Stocker, B. D., Viovy, N., Wang, Y. P., Wiltshire, A., Zaehle, S., and Zeng, N.: The dominant role of semi-arid ecosystems in the trend and variability of the land CO2 sink, Science, 348, 895–899, https://doi.org/10.1126/science.aaa1668, 2015.
Alberti, G., Vicca, S., Inglima, I., Belelli-Marchesini, L., Genesio, L., Miglietta, F., Marjanovic, H., Martinez, C., Matteucci, G., D'Andrea, E., Peressotti, A., Petrella, F., Rodeghiero, M., and Cotrufo, M. F.: Soil C:N stoichiometry controls carbon sink partitioning between above-ground tree biomass and soil organic matter in high fertility forests, Iforest 8, 195–206, https://doi.org/10.3832/ifor1196-008, 2014.
Atkin, O. K., Atkinson, L. J., Fisher, R. A., Campbell, C. D., Zaragoza-Castells, J., Pitchford, J. W., Woodward, F. I., and Hurry, V.: Using temperature-dependent changes in leaf scaling relationships to quantitatively account for thermal acclimation of respiration in a coupled global climate-vegetation model, Glob. Change Biol., 14, 1–18, https://doi.org/10.1111/j.1365-2486.2008.01664.x, 2008.
Aubinet, M., Grelle, G., Ibrom, A., Rannik, U., Moncrieff, J., Foken, T., Kowalski, A. S., Martin, P. H., Berbigier, P., Bernhofer, C., Clement, R., Elbers, J., Granier, A., Grunwald, T., Morgenstern, K., Pilegaard, K., Rebmann, C., Snijders, W., Valentini, R., and Vesala, T.: Estimates of the annual net carbon and water exchange of European forests: the EUROFLUX methodology, Adv. Ecol. Res., 30, 113–175, https://doi.org/10.1016/S0065-2504(08)60018-5, 2000.
Baldocchi, D., Falge, E., Gu, L., Olson, R., Hollinger, D., Running, S., Anthoni, P., Bernhofer, C., Davis, K., Evans, R., Fuentes, J., Goldstein, A., Katul, G., Law, B., Lee, X., Malhi, Y., Meyers, T., Munger, W., Oechel, W., Paw U, K. T., Pilegaard, K., Schmid, H. P., Valentini, R., Verma, S., Vesala, T., Wilson, K., and Wofsy, S.: FLUXNET: A new tool to study the temporal and spatial variability of ecosystem-scale carbon dioxide, water vapor, and energy flux densities, B. Am. Meteorol. Soc., 82, 2415–2434, https://doi.org/10.1175/1520-0477(2001)082<2415:FANTTS>2.3.CO;2, 2001.
Ball, J. T., Woodrow, I. E., and Berry, J. A.: A model predicting stomatal conductance and its contribution to the control of photosynthesis under different environmental conditions, in: Progress in Photosynthesis Research, edited by: Biggins, J., Springer Netherlands, 221–224, 1987.
Balogh, J., Pintér, K., Fóti, S., Cserhalmi, D., Papp, M., and Nagy, Z.: Dependence of soil respiration on soil moisture, clay content, soil organic matter, and CO2 uptake in dry grasslands, Soil Biol. Biochem., 43, 1006–1013, https://doi.org/10.1016/j.soilbio.2011.01.017, 2011.
Balsamo, G., Beljaars, A., Scipal, K., Viterbo, P., van den Hurk, B., Hirschi, M., and Betts, A. K.: A Revised Hydrology for the ECMWF Model: Verification from Field Site to Terrestrial Water Storage and Impact in the Integrated Forecast System, J. Hydrometeorol., 10, 623–643, https://doi.org/10.1175/2008JHM1068.1, 2009.
Barcza, Z., Kern, A., Haszpra, L., and Kljun, N.: Spatial representativeness of tall tower eddy covariance measurements using remote sensing and footprint analysis, Agr. Forest Meteorol., 149, 795–807, https://doi.org/10.1016/j.agrformet.2008.10.021, 2009.
Barcza, Z., Bondeau, A., Churkina, G., Ciais, P., Czóbel, S., Gelybó, G., Grosz, B., Haszpra, L., Hidy, D., Horváth, L., Machon, A., Pásztor, L., Somogyi, Z., and Van Oost, K.: Model-based biospheric greenhouse gas balance of Hungary, in: Atmospheric Greenhouse Gases: The Hungarian Perspective, edited by: Haszpra, L., Springer, 295–330, 2011.
Beven, K. and Binley, A.: The future of distributed models: Model calibration and uncertainty prediction, Hydrol. Process., 6, 279–298, https://doi.org/10.1002/hyp.3360060305, 1992.
Bond-Lamberty, B., Gower, S. T., Ahl, D. E., and Thornton, P. E.: Reimplementation of the Biome-BGC model to simulate successional change, Tree Physiol., 25, 413–424, https://doi.org/10.1093/treephys/25.4.413, 2005.
Bond-Lamberty, B., Gower, S. T., and Ahl, D. E.: Improved simulation of poorly drained forests using Biome-BGC, Tree Physiol., 27, 703–715, https://doi.org/10.1093/treephys/27.5.703, 2007a.
Bond-Lamberty, B., Peckham, S. D., Ahl, D. E., and Gower, S. T.: Fire as the dominant driver of central Canadian boreal forest carbon balance, Nature, 450, 89–92, https://doi.org/10.1038/nature06272, 2007b.
Campbell, G. S. and Diaz, R.: Simplified soil water balance models to predict crop transpiration, in: Drought Research Priorities for the Drylands, 15–26, 1988.
Campioli, M., Vicca, S., Luyssaert, S., Bilcke, J., Ceschia, E., Chapin III, F. S., Ciais, P., Fernández-Martínez, M., Malhi, Y., Obersteiner, M., Olefeldt, D., Papale, D., Piao, S. L., Peñuelas, J., Sullivan, P. F., Wang, X., Zenone, T., and Janssens, I. A.: Biomass production efficiency controlled by management in temperate and boreal ecosystems, Nat. Geosci., 8, 843–846, https://doi.org/10.1038/ngeo2553, 2015.
Cannell, M. G. R. and Thornley, J. H. M.: Modelling the components of plant respiration: Some guiding principles, Ann. Bot.-London, 85, 45–54, https://doi.org/10.1006/anbo.1999.0996, 2000.
Chapin, F. S., Woodwell, G. M., Randerson, J. T., Rastetter, E. B., Lovett, G. M., Baldocchi, D. D., Clark, D. A., Harmon, M. E., Schimel, D. S., Valentini, R., Wirth, C., Aber, J. D., Cole, J. J., Goulden, M. L., Harden, J. W., Heimann, M. R., Howarth, W., Matson, P. A., McGuire, A. D., Melillo, J. M., Mooney, H. A., Neff, J. C., Houghton, R. A., Pace, M. L., Ryan, M. G., Running, S. W., Sala, O. E., Schlesinger, W. H., and Schulze, E. D.: Reconciling carbon-cycle concepts, terminology, and methods, Ecosystems 9, 1041–1050, https://doi.org/10.1007/s10021-005-0105-7, 2006.
Chen, F. and Dudhia, J.: Coupling an Advanced Land Surface–Hydrology Model with the Penn State–NCAR MM5 Modeling System. Part I: Model Implementation and Sensitivity, Mon. Weather Rev., 129, 569–585, https://doi.org/10.1175/1520-0493(2001)129<0569:CAALSH>2.0.CO;2, 2001.
Chiesi, M., Maselli, F., Moriondo, M., Fibbi, L., Bindi, M., and Running, S. W.: Application of BIOME-BGC to simulate Mediterranean forest processes, Ecol. Model., 206, 179–190, https://doi.org/10.1016/j.ecolmodel.2007.03.032, 2007.
Churkina, G., Running, S. W., Running, S. W., Schloss, A. L., and the participants of the Potsdam NPP Model Intercomparison: Comparing global models of terrestrial net primary productivity (NPP): the importance of water availability, Glob. Change Biol., 5, 46–55, https://doi.org/10.1046/j.1365-2486.1999.00006.x, 1999.
Churkina, G., Tenhunen, J., Thornton, P., Falge, E. M., Elbers, J. A., Erhard, M., Grünwald, T., Kowalski, A. S., Rannik, Ü., and Sprinz, D.: Analyzing the ecosystem carbon dynamics of four European coniferous forests using a biogeochemistry model, Ecosystems, 6, 168–184, https://doi.org/10.1007/s10021-002-0197-2, 2003.
Churkina, G., Brovkin, V., von Bloh, W., Trusilova, K., Jung, M., and Dentener, F.: Synergy of rising nitrogen depositions and atmospheric CO2 on land carbon uptake moderately offsets global warming, Global Biogeochem. Cy., 23, GB4027, https://doi.org/10.1029/2008GB003291, 2009.
Churkina, G., Zaehle, S., Hughes, J., Viovy, N., Chen, Y., Jung, M., Heumann, B. W., Ramankutty, N., Heimann, M., and Jones, C.: Interactions between nitrogen deposition, land cover conversion, and climate change determine the contemporary carbon balance of Europe, Biogeosciences, 7, 2749–2764, https://doi.org/10.5194/bg-7-2749-2010, 2010.
Ciais, P., Sabine, C., Bala, G., Bopp, L., Brovkin, V., Canadell, J.,Chhabra, A., DeFries, R., Galloway, J., Heimann, M., Jones, C., Le Quéré, C., Myneni, R. B., Piao S., and Thornton, P.: Carbon and Other Biogeochemical Cycles, in: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change edited by: Stocker, T. F., Qin, D., Plattner, G. K., Tignor, M., Allen, S. K., Boschung, J., Nauels, A., Xia, Y., Bex, V., and Midgley, P. M., Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013.
Clapp, R. B. and Hornberger, G. M.: Empirical equations for some soil hydraulic properties, Water Resour. Res., 14, 601–604, https://doi.org/10.1029/WR014i004p00601, 1978.
Collatz, G. J., Ball, J. T., Grivet, C., and Berry, J.: Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer, Agr. Forest Meteorol., 54, 107–136, https://doi.org/10.1016/0168-1923(91)90002-8, 1991.
Damour, G., Simonneau, T., Cochard, H., and Urban, L.: An overview of models of stomatal conductance at the leaf level, Plant. Cell Environ., 33, 1419–1438, https://doi.org/10.1111/j.1365-3040.2010.02181.x, 2010.
Dietze, M., Serbin, S., Davidson, C., Desai, A., Feng, X., Kelly, R., Kooper, R., Lebauer, D., Mantooth, J., Mchenry, K., and Wang, D.: A quantitative assessment of a terrestrial biosphere model's data needs across North American biomes, J. Geophys. Res.-Biogeo., 119, 286–300, https://doi.org/10.1002/2013JG002392, 2014.
Di Vittorio, A. V., Anderson, R. S., White, J. D., Miller, N. L., and Running, S. W.: Development and optimization of an Agro-BGC ecosystem model for C4 perennial grasses, Ecol. Model., 221, 2038–2053, https://doi.org/10.1016/j.ecolmodel.2010.05.013, 2010.
Driessen, P., Deckers, J., Spaargaren, O., and Nachtergaele, F.: Lecture notes on the major soils of the world, edited by: Driessen, P., Deckers, J., Spaargaren, O., and Nachtergaele, F., Food and Agriculture Organization (FAO), 2001.
Eastaugh, C. S., Pötzelsberger, E., and Hasenauer, H.: Assessing the impacts of climate change and nitrogen deposition on Norway spruce (Picea abies L. Karst) growth in Austria with BIOME-BGC, Tree Physiol., 31, 262–274, https://doi.org/10.1093/treephys/tpr033, 2011.
Farquhar, G. D., von Caemmerer, S., and Berry, J. A.: A bio-chemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78–90, https://doi.org/10.1007/BF00386231, 1980.
Florides, G. and Kalogirou, S.: Annual ground temperature measurements at various depth, available at: https://www.researchgate.net/publication/30500353 (last access: 10 April 2016), 2016.
Fodor, N. and Rajkai, K.: Computer program (SOILarium 1.0) for estimating the physical and hydrophysical properties of soils from other soil characteristics, Agrokémia és Talajt., 60, 27–40, 2011.
Foken, T. and Vichura, B.: Tools for quality assessment of surface-based flux measurements, Agr. Forest Meteorol., 78, 83–105, https://doi.org/10.1016/0168-1923(95)02248-1, 1996.
Franks, P. J., Adams, M. A., Amthor, J. S., Barbour, M. M., Berry, J. A., Ellsworth, D. S., Farquhar, G. D., Ghannoum, O., Lloyd, J., McDowel, L., Norby, R. J., Tissue, D. T., and von Caemmerer, S.: Sensitivity of plants to changing atmospheric CO2 concentration: from the geological past to the next century, New Phytol., 197, 1077–1094, https://doi.org/10.1111/nph.12104, 2013.
Friedlingstein, P. and Prentice, I. C.: Carbon-climate feedbacks: a review of model and observation based estimates, Curr. Opin. Environ. Sust., 2, 251–257, https://doi.org/10.1016/j.cosust.2010.06.002, 2010.
Friedlingstein, P., Joel, G., Field, C. B., and Fung, I. Y.: Toward an allocation scheme for global terrestrial carbon models, Glob. Change Biol., 5, 755–770, https://doi.org/10.1046/j.1365-2486.1999.00269.x, 1999.
Friedlingstein, P., Cox, P., Betts, R., Bopp, L., Von Bloh, W., Brovkin, V., Cadule, P., Doney, S., Eby, M., Fung, I., Bala, G., John, J. J., Jones, C. J., Joos, F., Kato, T. K., Kawamiya, M., Knorr, W., Lindsay, K., Matthews, H. D., Raddatz, T., Rayner, P., Reick, C., Roeckner, E., Schnitzler, K. G., Schnur, R., Strassmann, K., Weawer, A. J., Yoshikawa, C., and Zeng, N.: Climate-carbon cycle feedback analysis: results from the C4MIP model intercomparison, J. Climate, 19, 3338–3353, https://doi.org/10.1175/JCLI3800.1, 2006.
Friedlingstein, P., Meinshausen, M., Arora, V. K., Jones, C. D., Anav, A., Liddicoat, S. K., and Knutti, R.: Uncertainties in CMIP5 climate projections due to carbon cycle feedbacks, J. Climate, 27, 511–526, https://doi.org/10.1175/JCLI-D-12-00579.1, 2014.
Friend, A. D., Arneth, A., Kiang, N. Y., Lomas, M., Ogée, J., Rödenbeck, C., Running, S. W., Santaren, J. D., Sitch, S., Viovy, N., Woodward, F. I., and Zaehle, S.: FLUXNET and modelling the global carbon cycle, Glob. Change Biol., 1, 1–24, https://doi.org/10.1111/j.1365-2486.2006.01223.x, 2006.
Groffman, P. M. and Tiedje, J. M.: Denitrification in north temperate forest soils: Relationships between denitrification and environmental factors at the landscape scale, Soil Biol. Biochem., 21, 621–626, https://doi.org/10.1016/0038-0717(89)90054-0, 1989
Hartig, F., Dyke, J., Hickler, T., Higgins, S. I., O'Hara, R. B., Scheiter, S., and Huth, A.: Connecting dynamic vegetation models to data - an inverse perspective, J. Biogeogr., 39, 2240–2252, https://doi.org/10.1111/j.1365-2699.2012.02745.x, 2012.
Hashimoto, S., Morishita, T., Sakata, T., Ishizuka, S., Kaneko, S., and Takahashi, M.: Simple models for soil CO2, CH4, and N2O fluxes calibrated using a Bayesian approach and multi-site data, Ecol. Model., 222, 1283–1292, https://doi.org/10.1016/j.ecolmodel.2011.01.013, 2011.
Hidy, D., Barcza, Z., Haszpra, L., Churkina, G., Pintér, K., and Nagy, Z.: Development of the Biome-BGC model for simulation of managed herbaceous ecosystems, Ecol. Model., 226, 99–119, https://doi.org/10.1016/j.ecolmodel.2011.11.008, 2012.
Hidy, D., Barcza, Z., Thornton, P., and Running, S. W.: User's Guide for Biome-BGC MuSo 4.0, available at: http://nimbus.elte.hu/bbgc/files/Manual_BBGC_MuSo_v4.0.pdf (last access: 15 October 2016), 2015.
Hlásny, T., Barcza, Z., Barka, I., Merganicova, K., Sedmak, R., Kern, A, Pajtik, J., Balazs, B., Fabrika, M., and Churkina, G.: Future carbon cycle in mountain spruce forests of Central Europe: Modelling framework and ecological inferences, Forest Ecol. Manage., 328, 55–68, https://doi.org/10.1016/j.foreco.2014.04.038, 2014.
Hunt, E. R., Piper, S. C., Nemani, R., Keeling, C. D., Otto, R. D., and Running, S. W.: Global net carbon exchange and intra-annual atmospheric CO2 concentrations predicted by an ecosystem process model and three-dimensional atmospheric transport model, Global Biogeochem. Cy., 10, 431–456, https://doi.org/10.1029/96GB01691, 1996.
Huntzinger, D. N., Schwalm, C., Michalak, A. M., Schaefer, K., King, A. W., Wei, Y., Jacobson, A., Liu, S., Cook, R. B., Post, W. M., Berthier, G., Hayes, D., Huang, M., Ito, A., Lei, H., Lu, C., Mao, J., Peng, C. H., Peng, S., Poulter, B., Riccuito, D., Shi, X., Tian, H., Wang, W., Zeng, N., Zhao, F., and Zhu, Q.: The North American Carbon Program Multi-Scale Synthesis and Terrestrial Model Intercomparison Project – Part 1: Overview and experimental design, Geosci. Model Dev., 6, 2121–2133, https://doi.org/10.5194/gmd-6-2121-2013, 2013.
IPCC: Guidelines for National Greenhouse Gas Inventories, edited by: Eggleston, H. S., Buendia, L., Miwa, K., Ngara, T., and Tanabe, K., National Greenhouse Gas Inventories Programme, IGES, Japan, 2006.
Jarvis, N. J.: A simple empirical model of root water uptake, J. Hydrol., 107, 57–72, https://doi.org/10.1016/0022-1694(89)90050-4, 1989.
Jarvis, P. G.: The interpretation of the variations in leaf water potential and stomatal conductance found in canopies in the field, Philos. Trans. R. Soc. B, 273, 593–610, https://doi.org/10.1098/rstb.1976.0035, 1976.
Jochheim, H., Puhlmann, M., Beese, F., Berthold, D., Einert, P., Kallweit, R., Konopatzky, A., Meesenburg, H., Meiwes, K. J., Raspe, S., Schulte-Bisping, H., and Schulz, C.: Modelling the carbon budget of intensive forest monitoring sites in Germany using the simulation model BIOME-BGC, iForest – Biogeosciences For., 2, 7–10, https://doi.org/10.3832/ifor0475-002, 2009.
Jolly, W., Nemani, R. R., and Running, S. W.: A generalized, bioclimatic index to predict foliar phenology in response to climate, Glob. Change Biol., 11, 619–632, https://doi.org/10.1111/j.1365-2486.2005.00930.x, 2005.
Jung, M., Le Maire, G., Zaehle, S., Luyssaert, S., Vetter, M., Churkina, G., Ciais, P., Viovy, N., and Reichstein, M.: Assessing the ability of three land ecosystem models to simulate gross carbon uptake of forests from boreal to Mediterranean climate in Europe, Biogeosciences, 4, 647–656, https://doi.org/10.5194/bg-4-647-2007, 2007a.
Jung, M., Vetter, M., Herold, M., Churkina, G., Reichstein, M., Zaehle, S., Ciais, P., Viovy, N., Bondeau, A., Chen, Y., Trusilova, K., Feser, F., and Heimann, M.: Uncertainties of modeling gross primary productivity over Europe: A systematic study on the effects of using different drivers and terrestrial biosphere models, Global Biogochem. Cy., 21, GB4021, https://doi.org/10.1029/2006GB002915, 2007b.
Kimball, J. S., White, M. A., and Running, S. W.: BIOME-BGC simulations of stand hydrologic processes for BOREAS, J. Geophys. Res., 102, 29043–29051, https://doi.org/10.1029/97JD02235, 1997.
Knorr, W. and Kattge, J.: Inversion of terrestrial ecosystem model parameter values against eddy covariance measurements by Monte Carlo sampling, Glob. Change Biol., 11, 1333–1351, https://doi.org/10.1111/j.1365-2486.2005.00977.x, 2005.
Korol, R. L., Milner, K. S., and Running, S. W.: Testing a mechanistic model for predicting stand and tree growth, Forest Sci., 42, 139–153, 1996.
Kulkarni, M. V., Burgin, A. J., Groffman, P. M., and Yavitt, J. B.: Direct flux and N-15 tracer methods for measuring denitrification in forest soils, Biogeochemistry, 117, 359–373, https://doi.org/10.1007/s10533-013-9876-7, 2014.
Lagergren, F., Grelle, A., Lankreijer, H., Mölder, M., and Lindroth, A.: Current carbon balance of the forested area in Sweden and its sensitivity to global change as simulated by Biome-BGC, Ecosystems, 9, 894–908, https://doi.org/10.1007/s10021-005-0046-1, 2006.
Leuning, R.: A critical appraisal of a combined stomatal-photosynthesis model for C3 plants, Plant. Cell Environ., 18, 339–355, https://doi.org/10.1111/j.1365-3040.1995.tb00370.x, 1995.
Liu, H. P., Peters, G., and Foken, T.: New equations for sonic temperature variance and buoyancy heat flux with an omnidirectional sonic anemometer, Bound.-Lay Meteorol., 100, 459–468, https://doi.org/10.1023/A:1019207031397, 2001.
Lombardozzi, D. L., Bonan, G. B., Smith, N. G., Dukes, J. S., and Fisher, R. A.: Temperature acclimation of photosynthesis and respiration: a key uncertainty in the carbon cycle-climate feedback, Geophys. Res. Lett., 42, 8624–8631, https://doi.org/10.1002/2015GL065934, 2015.
Ma, S., Churkina, G., Wieland, R., and Gessler, A.: Optimization and evaluation of the ANTHRO-BGC model for winter crops in Europe, Ecol. Model., 222, 3662–3679, https://doi.org/10.1016/j.ecolmodel.2011.08.025, 2011.
Ma, S., Acutis, A., Barcza, Z., Touhami, H. B., Doro, L., Hidy, D., Köchy, M., Minet, J., Lellei-Kovács, E., Perego, A., Rolinski, A., Ruget, F., Seddaiu, G., Wu, L., and Bellocchi, G.: The grassland model intercomparison of the MACSUR (Modelling European Agriculture with Climate Change for Food Security) European knowledge hub, in: Proceedings of the 7th International Congress on Environmental Modelling and Software, edited by: Ames, D. P., Quinn, N. W. T., and Rizzoli, A. E., San Diego, California, USA, 2014.
Marjanović, H., Alberti, G., Balogh, J., Czóbel, S., Horváth, L., Jagodics, A., Nagy, Z., Ostrogović, M. Z., Peressotti, A., and Führer, E.: Measurements and estimations of biosphere-atmosphere exchange of greenhouse gases − Grasslands, in: Atmospheric Greenhouse Gases: The Hungarian Perspective, edited by: Haszpra, L., Springer, Dordrecht – Heidelberg – London – New York, 121–156, https://doi.org/10.1007/978-90-481-9950-1_7, 2011a.
Marjanović, H., Ostrogović, M. Z., Alberti, G., Balenović, I., Paladinić, E., Indir, K., Peresotti, A., and Vuletić, D.: Carbon dynamics in younger stands of pedunculate oak during two vegetation periods, Šum. list special issue, 135, 59–73, 2011b (in Croatian with English summary).
Martre, P., Wallach, D., Asseng, S., Ewert, F., Jones, J. W., Rotter, R. P., Boote, K. J., Ruane, A. C., Thorburn, P. J., Cammarano, D., Hatfield, J. L., Rosenzweig, C., Aggarwal, P. K., Angulo, C., Basso, B., Bertuzzi, P., Biernath, C., Brisson, N., Challinor, A. J., Doltra, J., Gayler, S., Goldberg, R., Grant, R. F., Heng, L., Hooker, J., Hunt, L. A., Ingwersen, J., Izaurralde, R. C., Kersebaum, K. C., Müller, C., Kumar, S. N., Nendel, C., O'leary, G., Olesen, J. E., Osborne, T. M., Palosuo, T., Priesack, E., Ripoche, D., Semenov, M. A., Shcherback, I., Steduto, P., Stöckle, C. O., Stratonovitch, P., Streck, T., Supit, I., Tao, F., Travasso, M., Waha, K., White, J. W., and Wolf, J.: Multimodel ensembles of wheat growth: many models are better than one, Glob. Change Biol., 21, 911–925, https://doi.org/10.1111/gcb.12768, 2015.
Maselli, F., Chiesi, M., Brilli, L., and Moriondo, M.: Simulation of olive fruit yield in Tuscany through the integration of remote sensing and ground data, Ecol. Model., 244, 1–12, https://doi.org/10.1016/j.ecolmodel.2012.06.028, 2012.
Massman, W. J.: The attenuation of concentration fluctuations in turbulent flow through a tube, J. Geophys. Res., 96, 15269–15273, https://doi.org/10.1029/91JD01514, 1991.
Mayer, B.: Hydropedological relations in the region of lowland forests of Pokupsko basin, Radovi Šumarskog instituta Jastrebarsko, 31, 37–89, 1996 (in Croatian with English summary).
Medlyn, B. E., Dreyer, E., Ellsworth, D., Forstreuter, M., Harley, P. C., Kirschbaum, M. U. F., Le Roux, X., Montpied, P., Strassemeyer, J., Walcroft, A., Wang, K., and Loustau, D.: Temperature response of parameters of a biochemically based model of photosynthesis. II. A review of experimental data, Plant. Cell Environ., 25, 1167–1179, https://doi.org/10.1046/j.1365-3040.2002.00891.x, 2002.
Merganičová, K., Pietsch, S. A., and Hasenauer, H.: Testing mechanistic modeling to assess impacts of biomass removal, Forest Ecol. Manag., 207, 37–57, https://doi.org/10.1016/j.foreco.2004.10.017, 2005.
Moore, C. J.: Frequency-response corrections for eddy-correlation systems, Bound.-Lay. Meteorol., 37, 17–35, https://doi.org/10.1007/BF00122754, 1986.
Morecroft, M. D. and Roberts, J. M.: Photosynthesis and stomatal conductance of mature canopy Oak and Sycamore trees throughout the growing season, Funct. Ecol., 13, 332–342, 1999.
Mu, Q., Zhao, M., Running, S. W., Liu, M., and Tian, H.: Contribution of increasing CO2 and climate change to the carbon cycle in China's ecosystems, J. Geophys. Res.-Biogeo., 113, G01018, https://doi.org/10.1029/2006JG000316, 2008.
Nagy, Z., Pintér, K., Czóbel, S., Balogh, J., Horváth, L., Fóti, S., Barcza, Z., Weidinger, T., Csintalan, Z., Dinh, N. Q., Grosz, B., and Tuba, Z.: The carbon budget of semi-arid grassland in a wet and a dry year in Hungary, Agr. Ecosyst. Environ., 121, 21–29, https://doi.org/10.1016/j.agee.2006.12.003, 2007.
Nagy, Z., Barcza, Z., Horváth, L., Balogh, J., Hagyó, A., Káposztás, N., Grosz, B., Machon, A., and Pintér, K.: Measurements and estimations of biosphere-atmosphere exchange of greenhouse gases – Grasslands, in: Atmospheric Greenhouse Gases: The Hungarian Perspective, edited by: Haszpra, L., 91–120, Springer, Dordrecht – Heidelberg – London – New York, 2011.
Nakai, T., van der Molen, M. K., Gash, J. H. C., and Kodama, Y: Correction of sonic anemometer angle of attack errors, Agr. Forest Meteorol., 136, 19–30, https://doi.org/10.1016/j.agrformet.2006.01.006, 2006.
Nemani, R. R. and Running, S. W.: Testing a theoretical climate-soil-leaf area hydrologic equilibrium of forests using satellite data and ecosystem simulation, Agr. Forest Meteorol., 44, 245–260, https://doi.org/10.1016/0168-1923(89)90020-8, 1989.
Olin, S., Schurgers, G., Lindeskog, M., Wårlind, D., Smith, B., Bodin, P., Holmér, J., and Arneth, A.: Modelling the response of yields and tissue C : N to changes in atmospheric CO2 and N management in the main wheat regions of western Europe, Biogeosciences, 12, 2489–2515, https://doi.org/10.5194/bg-12-2489-2015, 2015.
Ostrogović, M. Z.: Carbon stocks and carbon balance of an even-aged pedunculate oak (Quercus robur L.) forest in Kupa river basin, doctoral thesis, Faculty of forestry, University of Zagreb, 2013 (in Croatian with English summary).
Petritsch, R., Hasenauer, H., and Pietsch, S. A.: Incorporating forest growth response to thinning within biome-BGC, Forest Ecol. Manag., 242, 324–336, https://doi.org/10.1016/j.foreco.2007.01.050, 2007.
Pietsch, S. A., Hasenauer, H., Kucera, J., and Cermák, J.: Modeling effects of hydrological changes on the carbon and nitrogen balance of oak in floodplains, Tree Physiol., 23, 735–746, 2003.
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier, P., Bernhofer, C., Buchmann, N., Gilmanov, T., Granier, A., Grunwald, T., Havrankova, K., Ilvesniemi, H., Janous, D., Knohl, A., Laurila, T., Lohila, A., Loustau, D., Matteucci, G., Meyers, T., Miglietta, F., Ourcival, J. M., Pumpanen, J., Rambal, S., Rotenberg, E., Sanz, M., Tenhunen, J., Seufert, G., Vaccari, F., Vesala, T., Yakir, D., and Valentini, R.: On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm, Glob. Change Biol., 11, 1424–1439, https://doi.org/10.1111/j.1365-2486.2005.001002.x, 2005.
Ritchie, J. T.: Soil water balance and plant water stress, in: Understanding Options for Agricultural Production, edited by: Tsuji, G. Y., Hoogenboom, G., and Thornton, P. E., Kluwer Academic Publishers, The Netherlands, 41–54, 1998.
Running, S. W. and Coughlan, J. C.: A general model of forest ecosystem processes for reginonal applications I. Hydrologic balance, canopy gas exchange and primary production processes, Ecol. Model., 42, 125–154, https://doi.org/10.1016/0304-3800(88)90112-3, 1988.
Running, S. W. and Gower, S. T.: FOREST-BGC, A general model of forest ecosystem processes for regional applications. II. Dynamic carbon allocation and nitrogen budgets, Tree Physiol., 9, 147–160, https://doi.org/10.1093/treephys/9.1-2.147, 1991.
Running, S. W. and Hunt, E. R. J.: Generalization of a forest ecosystem process model for other biomes, BIOME-BGC, and an application for global-scale models, in: Scaling Physiological Processes: Leaf to Globe, edited by: Ehleringer, J. R. and Field, C., Academic Press, San Diego, 141–158, 1993.
Sándor, R. and Fodor, N.: Simulation of soil temperature dynamics with models using different concepts, Sci. World J., 2012, 1–8, https://doi.org/10.1100/2012/590287, 2012.
Sándor, R., Ma, S., Acutis, M., Barcza, Z., Ben Touhami, H., Doro, L., Hidy, D., Köchy, M., Lellei-Kovács, E., Minet, J., Perego, A., Rolinski, S., Ruget, F., Seddaiu, G., Wu, L., and Bellocchi, G.: Uncertainty in simulating biomass yield and carbon-water fluxes from grasslands under climate change, Advances in Animal Biosciences, 6, 49–51, https://doi.org/10.1017/S2040470014000545, 2015.
Sándor, R., Barcza, Z., Hidy, D., Lellei-Kovács, E., Ma, S., and Bellocchi, G.: Modelling of grassland fluxes in Europe: evaluation of two biogeochemical models, Agr. Ecosyst. Environ., 215, 1–19, https://doi.org/10.1016/j.agee.2015.09.001, 2016.
Schmid, S., Zierl, B., and Bugmann, H.: Analyzing the carbon dynamics of central European forests: comparison of Biome-BGC simulations with measurements, Reg. Environ. Chang., 6, 167–180, https://doi.org/10.1007/s10113-006-0017-x, 2006.
Schulze, E. D., Luyssaert, S., Ciais, P., Freibauer, A., Janssens, I. A., Soussana, J. F., Smith, P., Grace, J., Levin, I., Thiruchittampalam, B., Heimann, M., Dolman, A. J., Valentini, R., Bousquet, P., Peylin, P., Peters, W., Rödenbeck, C., Etiope, G., Vuichard, N., Wattenbach, M., Nabuurs, G. J., Poussi, Z., Nieschulze, J., Gash, J. H., and CarboEurope Team: Importance of methane and nitrous oxide for Europe's terrestrial greenhouse-gas balance, Nat. Geosci., 2, 842–850, https://doi.org/10.1038/ngeo686, 2009.
Schwalm, C. R., Williams, C. A., Schaefer, K., Anderson, R., Arain, M. A., Baker, I., Barr, A., Black, T. A., Chen, G., Chen, J. M., Ciais, P., Davis, K. J., Desai, A., Dietze, M., Dragoni, D., Fischer, M. L., Flanagan, L. B., Grant, R., Gu, L., Hollinger, D., Izaurralde, R. C., Kucharik, C., Lafleur, P., Law, B. E., Li, L., Li, Z., Liu, S., Lokupitiya, E., Luo, Y., Ma, S., Margolis, H., Matamala, R., McCaughey, H., Monson, R. K., Oechel, W. C., Peng, C., Poulter, B., Price, D. T., Riciutto, D. M., Riley, W., Sahoo, A. K., Sprintsin, M., Sun, J., Tian, H., Tonitto, C., Verbeeck, H., and Verma, S. B.: A model-data intercomparison of CO2 exchange across North America: Results from the North American Carbon Program site synthesis, J. Geophys. Res., 115, G00H05, https://doi.org/10.1029/2009JG001229, 2010.
Schwalm, C. R., Huntinzger, D. N., Fisher, J. B., Michalak, A. M., Bowman, K., Cias, P., Cook, R., El-Masri, B., Hayes, D., Huang, M., Ito, A., Jain, A., King, A.W., Lei, H., Liu, J., Lu, C., Mao, J., Peng, S., Poulter, B., Ricciuto, D., Schaefer, K., Shi, X., Tao, B., Tian, H., Wang, W., Wei, Y., Yang, J., and Zeng, N.: Toward “optimal” integration of terrestrial biosphere models, Geophys. Res. Lett., 42, 4418–4428, https://doi.org/10.1002/2015GL064002, 2015.
Smith, N. G. and Dukes, J. S.: Plant respiration and photosynthesis in global-scale models: Incorporating acclimation to temperature and CO2, Glob. Change Biol., 19, 45–63, https://doi.org/10.1111/j.1365-2486.2012.02797.x, 2012.
Suyker, A. E., Verma, S. B., and Burba, G. G.: Interannual variability in net CO2 exchange of a native tallgrass prairie, Glob. Change Biol., 9, 255–265, https://doi.org/10.1046/j.1365-2486.2003.00567.x, 2003.
Suyker, A. E., Verma, S. B., Burba, G. G., Arkebauer, T. J., Walters, D. T., and Hubbard, K. G.: Growing season carbon dioxide exchange in irrigated and rainfed maize, Agr. Forest Meteorol., 124, 1–13, https://doi.org/10.1016/j.agrformet.2004.01.011, 2004.
Tatarinov, F. A. and Cienciala, E.: Application of BIOME-BGC model to managed forests, Forest Ecol. Manag., 237, 267–279, https://doi.org/10.1016/j.foreco.2006.09.085, 2006.
Thomas, R. Q., Bonan, G. B., and Goodale, C. L.: Insights into mechanisms governing forest carbon response to nitrogen deposition: a model–data comparison using observed responses to nitrogen addition, Biogeosciences, 10, 3869–3887, https://doi.org/10.5194/bg-10-3869-2013, 2013.
Thornton, P., Law, B., Gholz, H. L., Clark, K. L., Falge, E., Ellsworth, D., Goldstein, A., Monson, R., Hollinger, D., Falk, M., Chen, J., and Sparks, J.: Modeling and measuring the effects of disturbance history and climate on carbon and water budgets in evergreen needleleaf forests, Agr. Forest Meteorol., 113, 185–222, https://doi.org/10.1016/S0168-1923(02)00108-9, 2002.
Thornton, P. E.: Regional ecosystem simulation: Combining surface- and satellite-based observations to study linkages between terrestrial energy and mass budgets, The University of Montana, 1998.
Thornton, P. E.: User's Guide for Biome-BGC, Version 4.1.1., available at: ftp://daac.ornl.gov/data/model_archive/BIOME_BGC/biome_bgc_4.1.1/comp/bgc_users_guide_411.pdf (last access: April 2016), 2000.
Thornton, P. E. and Rosenbloom, N. A.: Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model, Ecol. Model., 189, 25–48, https://doi.org/10.1016/j.ecolmodel.2005.04.008, 2005.
Thornton, P. E., Lamarque, J. F., Rosenbloom, N. A., and Mahowald, N. M.: Influence of carbon-nitrogen cycle coupling on land model response to CO2 fertilization and climate variability, Global Biogeochem. Cy., 21, GB4018, https://doi.org/10.1029/2006GB002868, 2007.
Tjoelker, M. G., Oleksyn, J., and Reich, P. B.: Modelling respiration of vegetation: evidence for a general temperature-dependent Q10, Glob. Change Biol., 7, 223–230, https://doi.org/10.1046/j.1365-2486.2001.00397.x, 2001.
Trusilova, K. and Churkina, G.: The response of the terrestrial biosphere to urbanization: land cover conversion, climate, and urban pollution, Biogeosciences, 5, 1505–1515, https://doi.org/10.5194/bg-5-1505-2008, 2008.
Trusilova, K., Trembath, J., and Churkina, G.: Parameter estimation and validation of the terrestrial ecosystem model Biome-BGC using eddy-covariance flux measurements, Technical Report 16, MPI for Biogeochemistry, Jena, 2009.
Ťupek, B., Zanchi, G., Verkerk, P. J., Churkina, G., Viovy, N., Hughes, J. K., and Lindner, M.: A comparison of alternative modelling approaches to evaluate the European forest carbon fluxes, Forest Ecol. Manag., 260, 241–251, https://doi.org/10.1016/j.foreco.2010.01.045, 2010.
Turner, D. P., Ritts, W. D., Law, B. E., Cohen, W. B., Yang, Z., Hudiburg, T., Campbell, J. L., and Duane, M.: Scaling net ecosystem production and net biome production over a heterogeneous region in the western United States, Biogeosciences, 4, 597–612, https://doi.org/10.5194/bg-4-597-2007, 2007.
Ueyama, M., Ichii, K., Hirata, R., Takagi, K., Asanuma, J., Machimura, T., Nakai, Y., Ohta, T., Saigusa, N., Takahashi, Y., and Hirano, T.: Simulating carbon and water cycles of larch forests in East Asia by the BIOME-BGC model with AsiaFlux data, Biogeosciences, 7, 959–977, https://doi.org/10.5194/bg-7-959-2010, 2010.
van Bodegom, P. M., Douma, J. C., Witte, J. P. M., Ordonez, J. C., Bartholomeus, R. P., and Aerts, R.: Going beyond limitations of plant functional types when predicting global ecosystem–atmosphere fluxes: exploring the merits of traits-based approaches, Global Ecol. Biogeogr., 21, 625–636, https://doi.org/10.1111/j.1466-8238.2011.00717.x, 2012.
van der Molen, M. K., Gash, J. H. C., and Elbers, J. A.: Sonic anemometer (co)sine response and flux measurement – II. The effect of introducing an angle of attack dependent calibration, Agr. Forest Meteorol., 122, 95–109, 2004.
van der Molen, M. K., Dolman, A. J., Ciais, P., Eglin, T., Gobron, N., Law, B. E., Meir, P., Peters, W., Phillips, O. L., Reichstein, M., Chen, T., Dekker, S. C., Doubková, M., Friedl, M. A., Jung, M., , van den Hurk, B. J. J. M., de Jeu, R. A. M., Kruijt, B., Ohta, T., Rebel, K. T., Plummer, S., Seneviratne, S. I., Sitch, S., Teuling, A. J., van der Werf, G. R., and Wang, G.: Drought and ecosystem carbon cycling, Agr. Forest Meteorol., 151, 765–773, https://doi.org/10.1016/j.agrformet.2011.01.018, 2011.
Verma, S. B., Dobermann, A., Cassman, K. G., Walters, D. T., Knops, J. M. N., Arkebauer, T. J., Suyker, A. E., Burba, G., Amos, B., Yang, H., Ginting, D., Hubbard, K., Gitleson, A. A., and Walter-Shea, E. A.: Annual carbon dioxide exchange in irrigatedrainfed maize based agroecosystems, Agr. Forest Meteorol., 131, 77–96, https://doi.org/10.1016/j.agrformet.2005.05.003, 2005.
Vetter, M., Wirth, C., Böttcher, H., Churkina, G., Schulze, E.-D., Wutzler, T., and Weber, G.: Partitioning direct and indirect human-induced effects on carbon sequestration of managed coniferous forests using model simulations and forest inventories, Glob. Change Biol., 11, 810–827, https://doi.org/10.1111/j.1365-2486.2005.00932.x, 2005.
Vetter, M., Churkina, G., Jung, M., Reichstein, M., Zaehle, S., Bondeau, A., Chen, Y., Ciais, P., Feser, F., Freibauer, A., Geyer, R., Jones, C., Papale, D., Tenhunen, J., Tomelleri, E., Trusilova, K., Viovy, N., and Heimann, M.: Analyzing the causes and spatial pattern of the European 2003 carbon flux anomaly using seven models, Biogeosciences, 5, 561–583, https://doi.org/10.5194/bg-5-561-2008, 2008.
Vickers, D. and Mahrt, L.: Quality control and flux sampling problems for tower and aircraft data, J. Atmos. Ocean. Tech., 14, 512–526, https://doi.org/10.1175/1520-0426(1997)014<0512:QCAFSP>2.0.CO;2, 1997.
Vitousek, P., Edin, L. O., Matson, P. A., Fownes, J. H., and Neff, J.: Within-system element cycles, input-output budgets, and nutrient limitations, in: Success, Limitations, and Frontiers in Ecosystem Science, edited by: Pace, M. and Groffman, P., Springer, New York, 432–451, 1998.
Vitousek, P. M., Fahey, T., Johnson, D. W., and Swift, M. J.: Element interactions in forest ecosystems: succession, allometry and input-output budgets, Biogeochemistry, 5, 7–34, https://doi.org/10.1007/BF02180316, 1988.
Wang, Q., Watanabe, M., and Ouyang, Z.: Simulation of water and carbon fluxes using BIOME-BGC model over crops in China, Agr. Forest Meteorol., 131, 209–224, https://doi.org/10.1016/j.agrformet.2005.06.002, 2005.
Webb, E. K., Pearman, G. I., and Leuning, R.: Correction of flux measurements for density effects due to heat and water-vapor transfer, Q. J. Roy. Meteor. Soc., 106, 85–100, https://doi.org/10.1002/qj.49710644707, 1980.
White, A., Melvin, G. R., Cannell, A., and Friend, D.: Climate change impacts on ecosystems and the terrestrial carbon sink: a new assessment, Global Environ. Change, 9, 21–30, https://doi.org/10.1016/S0959-3780(99)00016-3, 1999.
White, M., Thornton, P. E., Running, S. W., and Nemani, R. R.: Parameterization and sensitivity analysis of the BIOME–BGC terrestrial ecosystem model: Net primary production controls, Earth Interact., 4, 1–85, https://doi.org/10.1175/1087-3562(2000)004<0003:PASAOT>2.0.CO;2, 2000.
Wilczak, J. M., Oncley, S. P., and Stage, S. A.: Sonic anemometer tilt correction algorithms, Bound.-Lay. Meteor., 99, 127–150, https://doi.org/10.1023/A:1018966204465, 2001.
Williams, J. R.: Runoff and water erosion, in Modeling plant and soil systems, Agronomy Monograph nr. 31, edited by: Hanks, R. J. and Ritchie, J. T., American Society of Agronomy, Madison, Wisconsin, USA, 439–455, 1991.
Williams, M., Richardson, A. D., Reichstein, M., Stoy, P. C., Peylin, P., Verbeeck, H., Carvalhais, N., Jung, M., Hollinger, D. Y., Kattge, J., Leuning, R., Luo, Y., Tomelleri, E., Trudinger, C. M., and Wang, Y.-P.: Improving land surface models with FLUXNET data, Biogeosciences, 6, 1341–1359, https://doi.org/10.5194/bg-6-1341-2009, 2009.
Woodrow, I. E. and Berry, J. A.: Enzymatic regulation of photosynthetic CO2 fixation in C3 plants, Annu. Rev. Plant Phys., 39, 533–594, https://doi.org/10.1146/annurev.pp.39.060188.002533, 1988.
WRB: World Reference Base for Soil Resources (WRB), World Soil Resources Reports No. 103, IX+128 pp., ISSS, ISRIC and United Nations Food and Agriculture Organization (FAO), Rome, 2006.
Yi, C., Ricciuto, D., Li, R., Wolbeck, J., Xu, X., Nilsson, M., Aires, L., Albertson, J. D., Amman, C., Arain, M. A., de Araujo, A. C., Aubinet, M., Aurela, M., Barcza, Z., Barr, A., Berbigier, P., Beringer, J., Bernhofer, C., Black, A. T., Bolstad, P. V., Bosveld, F. C., Broadmeadow, M. S. J., Buchmann, N., Burns, S. P., Cellier, P., Chen, J., Chen, J., Ciais, P., Clement, R., Cook, B. D., Curtis, P. S., Dail, D. B., Dellwik, E., Delpierre, N., Desai, A. R., Dore, S., Dragoni, D., Drake, B. G., Dufrêne, E., Dunn, A., Elbers, J., Eugster, W., Falk, M., Feigenwinter, C., Flanagan, L. B., Foken, T., Frank, J., Fuhrer, J., Gianelle, D., Golstein, A., Goulden, M., Granier, A., Grunwald, T., Gu, L., Guo, H., Hammerle, A., Han, S., Hanan, N. P., Haszpra, L., Heinesch, B., Helfter, C., Hendriks, D., Hutley, L. B., Ibrom, A., Jacobs, C., Johansson, T., Jongen, M., Katul, G., Kiely, G., Klumpp, K., Knohl, A., Kolb, T., Kutsch, W. L., Lafleur, P., Laurila, T., Leuning, R., Lindroth, A., Liu, H., Loubet, B., Manca, G., Marek, M., Margolis, H. A., Martin, T. A., Massman, W. J., Matamala, R., Matteucci, G., McCaughey, H., Merbold, L., Meyers, T., Migliavacca, M., Miglietta, F., Misson, L., Molder, M., Moncrieff, J., Monson, R. K., Montagnani, L., Montes-Helu, M., Moors, E., Moureaux, C., et al.: Climate control of terrestrial carbon exchange across biomes and continents, Environ. Res. Lett., 5, 034007, https://doi.org/10.1088/1748-9326/5/3/034007, 2010.
Zheng, D., Raymond, H., and Running, S. W.: A daily soil temperature model based on air temperature and precipitation for continental applications, Clim. Res., 2, 183–191, https://doi.org/10.3354/cr002183, 1993.
Short summary
This paper provides detailed documentation on the changes implemented in the widely used biogeochemical model Biome-BGC. The version containing all improvements is referred to as Biome-BGCMuSo (Biome-BGC with multilayer soil module). Case studies on forest, cropland, and grassland are presented to demonstrate the effect of developments on the simulation. By using Biome-BGCMuSo, it became possible to analyze the effects of different environmental conditions and human activities on the ecosystems.
This paper provides detailed documentation on the changes implemented in the widely used...
