Articles | Volume 19, issue 6
https://doi.org/10.5194/gmd-19-2461-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-19-2461-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
The microbial community model MCoM 1.0: a scalable framework for modelling phototroph–heterotrophic interactions in diverse microbial communities
Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl von Ossietzky Universität Oldenburg, Oldenburg, Germany
Michael J. Follows
Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, United States
Jason G. Bragg
Research Centre for Ecosystem Resilience, Botanic Gardens of Sydney, Sydney, New South Wales, 2000, Australia
Sinikka T. Lennartz
Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl von Ossietzky Universität Oldenburg, Oldenburg, Germany
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Alexandra E. Jones-Kellett and Michael J. Follows
Ocean Sci., 21, 1141–1166, https://doi.org/10.5194/os-21-1141-2025, https://doi.org/10.5194/os-21-1141-2025, 2025
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Eddies are rotating ocean vortices up to hundreds of kilometers in diameter that stimulate phytoplankton blooms. We used satellite data and simulations of currents to examine the effect of eddy trapping strength on phytoplankton concentration in the open North Pacific Ocean. Coherent eddies trap phytoplankton, while "leaky" ones have lower concentrations because they mix with surrounding waters. However, contrary to previous theory, eddy-trapped blooms are more prominent in southern latitudes.
Alexandra E. Jones-Kellett and Michael J. Follows
Earth Syst. Sci. Data, 16, 1475–1501, https://doi.org/10.5194/essd-16-1475-2024, https://doi.org/10.5194/essd-16-1475-2024, 2024
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Ocean eddies can limit horizontal mixing, potentially isolating phytoplankton populations and affecting their concentration. We used two decades of satellite data and computer simulations to identify and track eddy-trapping boundaries in the Pacific Ocean for application in phytoplankton research. Although some eddies trap water masses for months, many continuously mix with surrounding waters. A case study shows how eddy trapping can enhance the signature of a phytoplankton bloom.
Marc von Hobe, Christoph Brühl, Sinikka T. Lennartz, Mary E. Whelan, and Aleya Kaushik
Atmos. Chem. Phys., 23, 6591–6598, https://doi.org/10.5194/acp-23-6591-2023, https://doi.org/10.5194/acp-23-6591-2023, 2023
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Carbonyl sulfide plays a role in the climate system as a greenhouse gas and as the major non-volcanic precursor of particles reflecting sunlight. Here, we comment on a proposal to increase the number of particles by emitting extra carbonyl sulfide at the surface. We show that the balance between aerosol cooling and greenhouse gas warming may not be as favorable as suggested and also that much of the carbonyl sulfide emissions will actually be taken up by the biosphere and the oceans.
Camille Abadie, Fabienne Maignan, Marine Remaud, Jérôme Ogée, J. Elliott Campbell, Mary E. Whelan, Florian Kitz, Felix M. Spielmann, Georg Wohlfahrt, Richard Wehr, Wu Sun, Nina Raoult, Ulli Seibt, Didier Hauglustaine, Sinikka T. Lennartz, Sauveur Belviso, David Montagne, and Philippe Peylin
Biogeosciences, 19, 2427–2463, https://doi.org/10.5194/bg-19-2427-2022, https://doi.org/10.5194/bg-19-2427-2022, 2022
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A better constraint of the components of the carbonyl sulfide (COS) global budget is needed to exploit its potential as a proxy of gross primary productivity. In this study, we compare two representations of oxic soil COS fluxes, and we develop an approach to represent anoxic soil COS fluxes in a land surface model. We show the importance of atmospheric COS concentration variations on oxic soil COS fluxes and provide new estimates for oxic and anoxic soil contributions to the COS global budget.
Marine Remaud, Frédéric Chevallier, Fabienne Maignan, Sauveur Belviso, Antoine Berchet, Alexandra Parouffe, Camille Abadie, Cédric Bacour, Sinikka Lennartz, and Philippe Peylin
Atmos. Chem. Phys., 22, 2525–2552, https://doi.org/10.5194/acp-22-2525-2022, https://doi.org/10.5194/acp-22-2525-2022, 2022
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Carbonyl sulfide (COS) has been recognized as a promising indicator of the plant gross primary production (GPP). Here, we assimilate both COS and CO2 measurements into an atmospheric transport model to obtain information on GPP, plant respiration and COS budget. A possible scenario for the period 2008–2019 leads to a global COS biospheric sink of 800 GgS yr−1 and higher oceanic emissions between 400 and 600 GgS yr−1.
Stefanie Kremser, Mike Harvey, Peter Kuma, Sean Hartery, Alexia Saint-Macary, John McGregor, Alex Schuddeboom, Marc von Hobe, Sinikka T. Lennartz, Alex Geddes, Richard Querel, Adrian McDonald, Maija Peltola, Karine Sellegri, Israel Silber, Cliff S. Law, Connor J. Flynn, Andrew Marriner, Thomas C. J. Hill, Paul J. DeMott, Carson C. Hume, Graeme Plank, Geoffrey Graham, and Simon Parsons
Earth Syst. Sci. Data, 13, 3115–3153, https://doi.org/10.5194/essd-13-3115-2021, https://doi.org/10.5194/essd-13-3115-2021, 2021
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Aerosol–cloud interactions over the Southern Ocean are poorly understood and remain a major source of uncertainty in climate models. This study presents ship-borne measurements, collected during a 6-week voyage into the Southern Ocean in 2018, that are an important supplement to satellite-based measurements. For example, these measurements include data on low-level clouds and aerosol composition in the marine boundary layer, which can be used in climate model evaluation efforts.
Sinikka T. Lennartz, Michael Gauss, Marc von Hobe, and Christa A. Marandino
Earth Syst. Sci. Data, 13, 2095–2110, https://doi.org/10.5194/essd-13-2095-2021, https://doi.org/10.5194/essd-13-2095-2021, 2021
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This study provides a marine emission inventory for the sulphur gases carbonyl sulphide (OCS) and carbon disulphide (CS2), derived from a numerical model of the surface ocean at monthly resolution for the period 2000–2019. Comparison with a database of seaborne observations reveals very good agreement for OCS. Interannual variability in both gases seems to be mainly driven by the amount of chromophoric dissolved organic matter present in surface water.
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Short summary
The Microbial Community Model (MCoM) is a flexible biogeochemical modeling framework which resolves a rich set of interactions between photosynthetic and heterotrophic microbes, including cross-feeding, metabolite exchange, and nutrient recycling. As such, it allows to assess community-level effects on elemental turnover emerging from microbial interactions. Its scalability allows to represent both simple pairwise interactions and large, diverse communities.
The Microbial Community Model (MCoM) is a flexible biogeochemical modeling framework which...