We developed the Speciated Isoprene Emission Model with Model of Emissions of Gases and Aerosols from Nature Algorithm for China to improve biogenic emission estimates using updated vegetation data and local measurements. The model predicts summer 2013 emissions of 10.92–11.37 teragrams of carbon. Validation shows our model performs better than the existing models, revealing underestimated isoprene impacts on ozone pollution in eastern China.