Articles | Volume 18, issue 11
https://doi.org/10.5194/gmd-18-3473-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-18-3473-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Using automatic calibration to improve the physics behind complex numerical models: an example from a 3D lake model using Delft3D (v6.02.10) and DYNO-PODS (v1.0)
Institute for Electromagnetic Sensing of the Environment, National Research Council, 20133 Milan, Italy
Department of Civil, Environmental and Mechanical Engineering, University of Trento, 38122 Trento, Italy
Abolfazl Irani Rahaghi
Eawag, Swiss Federal Institute of Aquatic Science and Technology, Surface Waters – Research and Management, Kastanienbaum 6047, Switzerland
Department of Geography, University of Zurich, 8057, Zurich, Switzerland
Damien Bouffard
Eawag, Swiss Federal Institute of Aquatic Science and Technology, Surface Waters – Research and Management, Kastanienbaum 6047, Switzerland
Faculty of Geosciences and Environment, Institute of Earth Surface Dynamics, University of Lausanne, Geopolis, Mouline, 1015, Lausanne, Switzerland
Marco Toffolon
Department of Civil, Environmental and Mechanical Engineering, University of Trento, 38122 Trento, Italy
Related authors
No articles found.
Olivia Desgué-Itier, Laura Melo Vieira Soares, Orlane Anneville, Damien Bouffard, Vincent Chanudet, Pierre Alain Danis, Isabelle Domaizon, Jean Guillard, Théo Mazure, Najwa Sharaf, Frédéric Soulignac, Viet Tran-Khac, Brigitte Vinçon-Leite, and Jean-Philippe Jenny
Hydrol. Earth Syst. Sci., 27, 837–859, https://doi.org/10.5194/hess-27-837-2023, https://doi.org/10.5194/hess-27-837-2023, 2023
Short summary
Short summary
The long-term effects of climate change will include an increase in lake surface and deep water temperatures. Incorporating up to 6 decades of limnological monitoring into an improved 1D lake model approach allows us to predict the thermal regime and oxygen solubility in four peri-alpine lakes over the period 1850–2100. Our modeling approach includes a revised selection of forcing variables and provides a way to investigate the impacts of climate variations on lakes for centennial timescales.
Artur Safin, Damien Bouffard, Firat Ozdemir, Cintia L. Ramón, James Runnalls, Fotis Georgatos, Camille Minaudo, and Jonas Šukys
Geosci. Model Dev., 15, 7715–7730, https://doi.org/10.5194/gmd-15-7715-2022, https://doi.org/10.5194/gmd-15-7715-2022, 2022
Short summary
Short summary
Reconciling the differences between numerical model predictions and observational data is always a challenge. In this paper, we investigate the viability of a novel approach to the calibration of a three-dimensional hydrodynamic model of Lake Geneva, where the target parameters are inferred in terms of distributions. We employ a filtering technique that generates physically consistent model trajectories and implement a neural network to enable bulk-to-skin temperature conversion.
Malgorzata Golub, Wim Thiery, Rafael Marcé, Don Pierson, Inne Vanderkelen, Daniel Mercado-Bettin, R. Iestyn Woolway, Luke Grant, Eleanor Jennings, Benjamin M. Kraemer, Jacob Schewe, Fang Zhao, Katja Frieler, Matthias Mengel, Vasiliy Y. Bogomolov, Damien Bouffard, Marianne Côté, Raoul-Marie Couture, Andrey V. Debolskiy, Bram Droppers, Gideon Gal, Mingyang Guo, Annette B. G. Janssen, Georgiy Kirillin, Robert Ladwig, Madeline Magee, Tadhg Moore, Marjorie Perroud, Sebastiano Piccolroaz, Love Raaman Vinnaa, Martin Schmid, Tom Shatwell, Victor M. Stepanenko, Zeli Tan, Bronwyn Woodward, Huaxia Yao, Rita Adrian, Mathew Allan, Orlane Anneville, Lauri Arvola, Karen Atkins, Leon Boegman, Cayelan Carey, Kyle Christianson, Elvira de Eyto, Curtis DeGasperi, Maria Grechushnikova, Josef Hejzlar, Klaus Joehnk, Ian D. Jones, Alo Laas, Eleanor B. Mackay, Ivan Mammarella, Hampus Markensten, Chris McBride, Deniz Özkundakci, Miguel Potes, Karsten Rinke, Dale Robertson, James A. Rusak, Rui Salgado, Leon van der Linden, Piet Verburg, Danielle Wain, Nicole K. Ward, Sabine Wollrab, and Galina Zdorovennova
Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
Short summary
Short summary
Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Tomy Doda, Cintia L. Ramón, Hugo N. Ulloa, Alfred Wüest, and Damien Bouffard
Hydrol. Earth Syst. Sci., 26, 331–353, https://doi.org/10.5194/hess-26-331-2022, https://doi.org/10.5194/hess-26-331-2022, 2022
Short summary
Short summary
At night or during cold periods, the shallow littoral region of lakes cools faster than their deeper interior. This induces a cold downslope current that carries littoral waters offshore. From a 1-year-long database collected in a small temperate lake, we resolve the seasonality of this current and report its frequent occurrence from summer to winter. This study contributes to a better quantification of lateral exchange in lakes, with implications for the transport of dissolved compounds.
Marco Toffolon, Luca Cortese, and Damien Bouffard
Geosci. Model Dev., 14, 7527–7543, https://doi.org/10.5194/gmd-14-7527-2021, https://doi.org/10.5194/gmd-14-7527-2021, 2021
Short summary
Short summary
The time when lakes freeze varies considerably from year to year. A common way to predict it is to use negative degree days, i.e., the sum of air temperatures below 0 °C, a proxy for the heat lost to the atmosphere. Here, we show that this is insufficient as the mixing of the surface layer induced by wind tends to delay the formation of ice. To do so, we developed a minimal model based on a simplified energy balance, which can be used both for large-scale analyses and short-term predictions.
Pascal Perolo, Bieito Fernández Castro, Nicolas Escoffier, Thibault Lambert, Damien Bouffard, and Marie-Elodie Perga
Earth Syst. Dynam., 12, 1169–1189, https://doi.org/10.5194/esd-12-1169-2021, https://doi.org/10.5194/esd-12-1169-2021, 2021
Short summary
Short summary
Wind blowing over the ocean creates waves that, by increasing the level of turbulence, promote gas exchange at the air–water interface. In this study, for the first time, we measured enhanced gas exchanges by wind-induced waves at the surface of a large lake. We adapted an ocean-based model to account for the effect of surface waves on gas exchange in lakes. We finally show that intense wind events with surface waves contribute disproportionately to the annual CO2 gas flux in a large lake.
Cintia L. Ramón, Hugo N. Ulloa, Tomy Doda, Kraig B. Winters, and Damien Bouffard
Hydrol. Earth Syst. Sci., 25, 1813–1825, https://doi.org/10.5194/hess-25-1813-2021, https://doi.org/10.5194/hess-25-1813-2021, 2021
Short summary
Short summary
When solar radiation penetrates the frozen surface of lakes, shallower zones underneath warm faster than deep interior waters. This numerical study shows that the transport of excess heat to the lake interior depends on the lake circulation, affected by Earth's rotation, and controls the lake warming rates and the spatial distribution of the heat flux across the ice–water interface. This work contributes to the understanding of the circulation and thermal structure patterns of ice-covered lakes.
Theo Baracchini, Philip Y. Chu, Jonas Šukys, Gian Lieberherr, Stefan Wunderle, Alfred Wüest, and Damien Bouffard
Geosci. Model Dev., 13, 1267–1284, https://doi.org/10.5194/gmd-13-1267-2020, https://doi.org/10.5194/gmd-13-1267-2020, 2020
Short summary
Short summary
Lake physical processes occur at a wide range of spatiotemporal scales. 3D hydrodynamic lake models are the only information source capable of solving those scales; however, they still need observations to be calibrated and to constrain their uncertainties. The optimal combination of a 3D hydrodynamic model, in situ measurements, and remote sensing observations is achieved through data assimilation. Here we present a complete data assimilation experiment for lakes using open-source tools.
Adrien Gaudard, Love Råman Vinnå, Fabian Bärenbold, Martin Schmid, and Damien Bouffard
Geosci. Model Dev., 12, 3955–3974, https://doi.org/10.5194/gmd-12-3955-2019, https://doi.org/10.5194/gmd-12-3955-2019, 2019
Short summary
Short summary
We have developed an openly accessible web-based platform for visualization and promotion of easy access to one-dimensional hydrodynamic lake model output data updated in near-real time (simstrat.eawag.ch). This platform was developed for 54 lakes in Switzerland, with potential for adaptation to other regional areas or even at a global worldwide scale using appropriate forcing input data.
Huayang Cai, Marco Toffolon, Hubert H. G. Savenije, Qingshu Yang, and Erwan Garel
Ocean Sci., 14, 769–782, https://doi.org/10.5194/os-14-769-2018, https://doi.org/10.5194/os-14-769-2018, 2018
Love Råman Vinnå, Alfred Wüest, Massimiliano Zappa, Gabriel Fink, and Damien Bouffard
Hydrol. Earth Syst. Sci., 22, 31–51, https://doi.org/10.5194/hess-22-31-2018, https://doi.org/10.5194/hess-22-31-2018, 2018
Short summary
Short summary
Responses of inland waters to climate change vary on global and regional scales. Shifts in river discharge regimes act as positive and negative feedbacks in influencing water temperature. The extent of this effect on warming is controlled by the change in river discharge and lake hydraulic residence time. A shift of deep penetrating river intrusions from summer towards winter can potentially counteract the otherwise negative climate effects on deep-water oxygen content.
Adrien Gaudard, Robert Schwefel, Love Råman Vinnå, Martin Schmid, Alfred Wüest, and Damien Bouffard
Geosci. Model Dev., 10, 3411–3423, https://doi.org/10.5194/gmd-10-3411-2017, https://doi.org/10.5194/gmd-10-3411-2017, 2017
Short summary
Short summary
The study of lakes often uses numerical models to reproduce the processes occurring in nature as accurately as possible. Due to the complexity of natural systems, all numerical models need to leave aside or simplify many of the relevant processes. In this work, we improve the modelling of the impact of wind on the internal currents in deep lakes. This improves the reproduction of deep mixing, which influences the concentrations of oxygen and nutrients, with biological and chemical consequences.
Damien Bouffard and Marie-Elodie Perga
Biogeosciences, 13, 3573–3584, https://doi.org/10.5194/bg-13-3573-2016, https://doi.org/10.5194/bg-13-3573-2016, 2016
Short summary
Short summary
This survey of an exceptional flood over Lake Geneva challenges the long-standing hypothesis that dense, particle-loaded and oxygenated rivers plunging into lakes necessarily contribute to deep-oxygen replenishment. We identified some river intrusions as hot spots for oxygen consumption, where inputs of fresh river-borne organic matter reactivate the respiration of more refractory lacustrine organic matter in a process referred to as "priming effect".
D. Diederen, H. H. G. Savenije, and M. Toffolon
Ocean Sci. Discuss., https://doi.org/10.5194/osd-12-925-2015, https://doi.org/10.5194/osd-12-925-2015, 2015
Revised manuscript not accepted
H. Cai, H. H. G. Savenije, and M. Toffolon
Hydrol. Earth Syst. Sci., 18, 287–304, https://doi.org/10.5194/hess-18-287-2014, https://doi.org/10.5194/hess-18-287-2014, 2014
S. Piccolroaz, M. Toffolon, and B. Majone
Hydrol. Earth Syst. Sci., 17, 3323–3338, https://doi.org/10.5194/hess-17-3323-2013, https://doi.org/10.5194/hess-17-3323-2013, 2013
Related subject area
Oceanography
Improvements to the Met Office's global ocean–sea ice forecasting system including model and data assimilation changes
Resolution dependence of interlinked Southern Ocean biases in global coupled HadGEM3 models
A new global high-resolution wave model for the tropical ocean using WAVEWATCH III version 7.14
sedInterFoam 1.0: a three-phase numerical model for sediment transport applications with free surfaces
The Ross Sea and Amundsen Sea Ice–Sea Model (RAISE v1.0): a high-resolution ocean–sea ice–ice shelf coupling model for simulating the Dense Shelf Water and Antarctic Bottom Water in the Ross Sea, Antarctica
Sensitivity of the tropical Atlantic to vertical mixing in two ocean models (ICON-O v2.6.6 and FESOM v2.5)
HIDRA3: a deep-learning model for multipoint ensemble sea level forecasting in the presence of tide gauge sensor failures
A wave-resolving two-dimensional vertical Lagrangian approach to model microplastic transport in nearshore waters based on TrackMPD 3.0
HOTSSea v1: a NEMO-based physical Hindcast of the Salish Sea (1980–2018) supporting ecosystem model development
Comparing an idealized deterministic-stochastic model (SUP model, version 1) of the tide-and-wind driven sea surface currents in the Gulf of Trieste to HF Radar observations
Impacts of CICE sea ice model and ERA atmosphere on an Antarctic MetROMS ocean model, MetROMS-UHel-v1.0
DalROMS-NWA12 v1.0, a coupled circulation–ice–biogeochemistry modelling system for the northwest Atlantic Ocean: development and validation
A revised ocean mixed layer model for better simulating the diurnal variation in ocean skin temperature
Evaluating an accelerated forcing approach for improving computational efficiency in coupled ice sheet–ocean modelling
An optimal transformation method for inferring ocean tracer sources and sinks
Data-driven rolling model for global wave height
PPCon 1.0: Biogeochemical-Argo profile prediction with 1D convolutional networks
Wave forecast investigations on downscaling, source terms, and tides for Aotearoa New Zealand
An Effective Communication Topology for Performance Optimization: A Case Study of the Finite Volume WAve Modeling (FVWAM)
Experimental design for the Marine Ice Sheet–Ocean Model Intercomparison Project – phase 2 (MISOMIP2)
Development of a total variation diminishing (TVD) sea ice transport scheme and its application in an ocean (SCHISM v5.11) and sea ice (Icepack v1.3.4) coupled model on unstructured grids
Spurious numerical mixing under strong tidal forcing: a case study in the south-east Asian seas using the Symphonie model (v3.1.2)
Modelling the water isotope distribution in the Mediterranean Sea using a high-resolution oceanic model (NEMO-MED12-watiso v1.0): evaluation of model results against in situ observations
LIGHT-bgcArgo-1.0: using synthetic float capabilities in E3SMv2 to assess spatiotemporal variability in ocean physics and biogeochemistry
GREAT v1.0: Global Real-time Early Assessment of Tsunamis
PIBM 1.0: An individual-based model for simulating phytoplankton acclimation, diversity, and evolution in the ocean
Towards a real-time modeling of global ocean waves by the fully GPU-accelerated spectral wave model WAM6-GPU v1.0
A simple approach to represent precipitation-derived freshwater fluxes into nearshore ocean models: an FVCOM4.1 case study of Quatsino Sound, British Columbia
An optimal transformation method applied to diagnose the ocean carbon budget
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 2: Towards a better representation of total alkalinity when modeling the carbonate system and air–sea CO2 fluxes
Development of a novel storm surge inundation model framework for efficient prediction
Skin sea surface temperature schemes in coupled ocean–atmosphere modelling: the impact of chlorophyll-interactive e-folding depth
DELWAVE 1.0: deep learning surrogate model of surface wave climate in the Adriatic Basin
StraitFlux – precise computations of water strait fluxes on various modeling grids
Comparison of the Coastal and Regional Ocean COmmunity model (CROCO) and NCAR-LES in non-hydrostatic simulations
Intercomparisons of Tracker v1.1 and four other ocean particle-tracking software packages in the Regional Ocean Modeling System
CAR36, a regional high-resolution ocean forecasting system for improving drift and beaching of Sargassum in the Caribbean archipelago
Implementation of additional spectral wave field exchanges in a three-dimensional wave–current coupled WAVEWATCH-III (version 6.07) and CROCO (version 1.2) configuration: assessment of their implications for macro-tidal coastal hydrodynamics
Comparison of 4-dimensional variational and ensemble optimal interpolation data assimilation systems using a Regional Ocean Modeling System (v3.4) configuration of the eddy-dominated East Australian Current system
LOCATE v1.0: numerical modelling of floating marine debris dispersion in coastal regions using Parcels v2.4.2
New insights into the South China Sea throughflow and water budget seasonal cycle: evaluation and analysis of a high-resolution configuration of the ocean model SYMPHONIE version 2.4
MQGeometry-1.0: a multi-layer quasi-geostrophic solver on non-rectangular geometries
Parameter estimation for ocean background vertical diffusivity coefficients in the Community Earth System Model (v1.2.1) and its impact on El Niño–Southern Oscillation forecasts
Great Lakes wave forecast system on high-resolution unstructured meshes
Impact of increased resolution on Arctic Ocean simulations in Ocean Model Intercomparison Project phase 2 (OMIP-2)
A high-resolution physical–biogeochemical model for marine resource applications in the northwest Atlantic (MOM6-COBALT-NWA12 v1.0)
A flexible z-layers approach for the accurate representation of free surface flows in a coastal ocean model (SHYFEM v. 7_5_71)
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 1: Evolution of ecosystem composition under limited light and nutrient conditions
Ocean wave tracing v.1: a numerical solver of the wave ray equations for ocean waves on variable currents at arbitrary depths
Design and evaluation of an efficient high-precision ocean surface wave model with a multiscale grid system (MSG_Wav1.0)
Davi Mignac, Jennifer Waters, Daniel J. Lea, Matthew J. Martin, James While, Anthony T. Weaver, Arthur Vidard, Catherine Guiavarc'h, Dave Storkey, David Ford, Edward W. Blockley, Jonathan Baker, Keith Haines, Martin R. Price, Michael J. Bell, and Richard Renshaw
Geosci. Model Dev., 18, 3405–3425, https://doi.org/10.5194/gmd-18-3405-2025, https://doi.org/10.5194/gmd-18-3405-2025, 2025
Short summary
Short summary
We describe major improvements of the Met Office's global ocean–sea ice forecasting system. The models and the way observations are used to improve the forecasts were changed, which led to a significant error reduction of 1 d forecasts. The new system performance in past conditions, where subsurface observations are scarce, was improved with more consistent ocean heat content estimates. The new system will be of better use for climate studies and will provide improved forecasts for end users.
David Storkey, Pierre Mathiot, Michael J. Bell, Dan Copsey, Catherine Guiavarc'h, Helene T. Hewitt, Jeff Ridley, and Malcolm J. Roberts
Geosci. Model Dev., 18, 2725–2745, https://doi.org/10.5194/gmd-18-2725-2025, https://doi.org/10.5194/gmd-18-2725-2025, 2025
Short summary
Short summary
The Southern Ocean is a key region of the world ocean in the context of climate change studies. We show that the Met Office Hadley Centre coupled model with intermediate ocean resolution struggles to accurately simulate the Southern Ocean. Increasing the frictional drag that the seafloor exerts on ocean currents and introducing a representation of unresolved ocean eddies both appear to reduce the large-scale biases in this model.
Axelle Gaffet, Xavier Bertin, Damien Sous, Héloïse Michaud, Aron Roland, and Emmanuel Cordier
Geosci. Model Dev., 18, 1929–1946, https://doi.org/10.5194/gmd-18-1929-2025, https://doi.org/10.5194/gmd-18-1929-2025, 2025
Short summary
Short summary
This study presents a new global wave model that improves predictions of sea states in tropical areas by using a high-resolution grid and corrected wind fields. The model is validated globally with satellite data and nearshore using in situ data. The model allows for the first time direct comparisons with in situ data collected at 10–30 m water depth, which is very close to shore due to the steep slope usually surrounding volcanic islands.
Antoine Mathieu, Yeulwoo Kim, Tian-Jian Hsu, Cyrille Bonamy, and Julien Chauchat
Geosci. Model Dev., 18, 1561–1573, https://doi.org/10.5194/gmd-18-1561-2025, https://doi.org/10.5194/gmd-18-1561-2025, 2025
Short summary
Short summary
Most of the tools available to model sediment transport do not account for complex physical mechanisms such as surface-wave-driven processes. In this study, a new model, sedInterFoam, allows us to reproduce numerically complex configurations in order to investigate coastal sediment transport applications dominated by surface waves and to gain insight into the complex physical processes associated with breaking waves and morphodynamics.
Zhaoru Zhang, Chuan Xie, Chuning Wang, Yuanjie Chen, Heng Hu, and Xiaoqiao Wang
Geosci. Model Dev., 18, 1375–1393, https://doi.org/10.5194/gmd-18-1375-2025, https://doi.org/10.5194/gmd-18-1375-2025, 2025
Short summary
Short summary
A coupled fine-resolution ocean–ice model is developed for the Ross Sea and adjacent regions in Antarctica, a key area for the formation of global ocean bottom water, the Antarctic Bottom Water (AABW), which affects global ocean circulation. The model has a high skill level in simulating sea ice production driving the AABW source water formation and AABW properties when assessed against observations. A model experiment shows a significant impact of ice shelf melting on the AABW characteristics.
Swantje Bastin, Aleksei Koldunov, Florian Schütte, Oliver Gutjahr, Marta Agnieszka Mrozowska, Tim Fischer, Radomyra Shevchenko, Arjun Kumar, Nikolay Koldunov, Helmuth Haak, Nils Brüggemann, Rebecca Hummels, Mia Sophie Specht, Johann Jungclaus, Sergey Danilov, Marcus Dengler, and Markus Jochum
Geosci. Model Dev., 18, 1189–1220, https://doi.org/10.5194/gmd-18-1189-2025, https://doi.org/10.5194/gmd-18-1189-2025, 2025
Short summary
Short summary
Vertical mixing is an important process, for example, for tropical sea surface temperature, but cannot be resolved by ocean models. Comparisons of mixing schemes and settings have usually been done with a single model, sometimes yielding conflicting results. We systematically compare two widely used schemes with different parameter settings in two different ocean models and show that most effects from mixing scheme parameter changes are model-dependent.
Marko Rus, Hrvoje Mihanović, Matjaž Ličer, and Matej Kristan
Geosci. Model Dev., 18, 605–620, https://doi.org/10.5194/gmd-18-605-2025, https://doi.org/10.5194/gmd-18-605-2025, 2025
Short summary
Short summary
HIDRA3 is a deep-learning model for predicting sea levels and storm surges, offering significant improvements over previous models and numerical simulations. It utilizes data from multiple tide gauges, enhancing predictions even with limited historical data and during sensor outages. With its advanced architecture, HIDRA3 outperforms current state-of-the-art models by achieving a mean absolute error of up to 15 % lower, proving effective for coastal flood forecasting under diverse conditions.
Isabel Jalón-Rojas, Damien Sous, and Vincent Marieu
Geosci. Model Dev., 18, 319–336, https://doi.org/10.5194/gmd-18-319-2025, https://doi.org/10.5194/gmd-18-319-2025, 2025
Short summary
Short summary
This study presents a novel modeling approach for understanding microplastic transport in coastal waters. The model accurately replicates experimental data and reveals key transport mechanisms. The findings enhance our knowledge of how microplastics move in nearshore environments, aiding in coastal management and efforts to combat plastic pollution globally.
Greig Oldford, Tereza Jarníková, Villy Christensen, and Michael Dunphy
Geosci. Model Dev., 18, 211–237, https://doi.org/10.5194/gmd-18-211-2025, https://doi.org/10.5194/gmd-18-211-2025, 2025
Short summary
Short summary
We developed a 3D ocean model called the Hindcast of the Salish Sea (HOTSSea v1) that recreates physical conditions throughout the Salish Sea from 1980 to 2018. It was not clear that acceptable accuracy could be achieved because of computational and data limitations, but the model's predictions agreed well with observations. When we used the model to examine ocean temperature trends in areas that lack observations, it indicated that some seasons and areas are warming faster than others.
Sofia Flora, Laura Ursella, and Achim Wirth
EGUsphere, https://doi.org/10.5194/egusphere-2024-3391, https://doi.org/10.5194/egusphere-2024-3391, 2025
Short summary
Short summary
We developed a hierarchy of idealized deterministic-stochastic models to simulate the sea surface currents in the Gulf of Trieste. They include tide-and-wind driven sea surface current components, resolving the slowly varying part of the flow and a stochastic signal, representing the fast-varying small-scale dynamics. The comparison with High Frequency Radar observations shows that the non-Gaussian stochastic model captures the essential dynamics and permits to mimic the observed fat-tailed PDF.
Cecilia Äijälä, Yafei Nie, Lucía Gutiérrez-Loza, Chiara De Falco, Siv Kari Lauvset, Bin Cheng, David A. Bailey, and Petteri Uotila
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-213, https://doi.org/10.5194/gmd-2024-213, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
The sea ice around Antarctica has experienced record lows in recent years. To understand these changes, models are needed. MetROMS-UHel is a new version of an ocean–sea ice model with updated sea ice code and the atmospheric data. We investigate the effect of our updates on different variables with a focus on sea ice and show an improved sea ice representation as compared with observations.
Kyoko Ohashi, Arnaud Laurent, Christoph Renkl, Jinyu Sheng, Katja Fennel, and Eric Oliver
Geosci. Model Dev., 17, 8697–8733, https://doi.org/10.5194/gmd-17-8697-2024, https://doi.org/10.5194/gmd-17-8697-2024, 2024
Short summary
Short summary
We developed a modelling system of the northwest Atlantic Ocean that simulates the currents, temperature, salinity, and parts of the biochemical cycle of the ocean, as well as sea ice. The system combines advanced, open-source models and can be used to study, for example, the ocean capture of atmospheric carbon dioxide, which is a key process in the global climate. The system produces realistic results, and we use it to investigate the roles of tides and sea ice in the northwest Atlantic Ocean.
Eui-Jong Kang, Byung-Ju Sohn, Sang-Woo Kim, Wonho Kim, Young-Cheol Kwon, Seung-Bum Kim, Hyoung-Wook Chun, and Chao Liu
Geosci. Model Dev., 17, 8553–8568, https://doi.org/10.5194/gmd-17-8553-2024, https://doi.org/10.5194/gmd-17-8553-2024, 2024
Short summary
Short summary
Sea surface temperature (SST) is vital in climate, weather, and ocean sciences because it influences air–sea interactions. Errors in the ECMWF model's scheme for predicting ocean skin temperature prompted a revision of the ocean mixed layer model. Validation against infrared measurements and buoys showed a good correlation with minimal deviations. The revised model accurately simulates SST variations and aligns with solar radiation distributions, showing promise for weather and climate models.
Qin Zhou, Chen Zhao, Rupert Gladstone, Tore Hattermann, David Gwyther, and Benjamin Galton-Fenzi
Geosci. Model Dev., 17, 8243–8265, https://doi.org/10.5194/gmd-17-8243-2024, https://doi.org/10.5194/gmd-17-8243-2024, 2024
Short summary
Short summary
We introduce an accelerated forcing approach to address timescale discrepancies between the ice sheets and ocean components in coupled modelling by reducing the ocean simulation duration. The approach is evaluated using idealized coupled models, and its limitations in real-world applications are discussed. Our results suggest it can be a valuable tool for process-oriented coupled ice sheet–ocean modelling and downscaling climate simulations with such models.
Jan D. Zika and Taimoor Sohail
Geosci. Model Dev., 17, 8049–8068, https://doi.org/10.5194/gmd-17-8049-2024, https://doi.org/10.5194/gmd-17-8049-2024, 2024
Short summary
Short summary
We describe a method to relate fluxes of heat and freshwater at the sea surface to the resulting distribution of seawater among categories such as warm and salty or cold and salty. The method exploits the laws that govern how heat and salt change when water mixes. The method will allow the climate community to improve estimates of how much heat the ocean is absorbing and how rainfall and evaporation are changing across the globe.
Xinxin Wang, Jiuke Wang, Wenfang Lu, Changming Dong, Hao Qin, and Haoyu Jiang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-181, https://doi.org/10.5194/gmd-2024-181, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Large-scale wave modeling is essential for science and society, typically relying on resource-intensive numerical methods to simulate wave dynamics. In this study, we introduce a rolling AI-based method for modeling global significant wave height. Our model achieves accuracy comparable to traditional numerical methods while significantly improving speed, making it operable on standard laptops. This work demonstrates AI's potential to enhance the accuracy and efficiency of global wave modeling.
Gloria Pietropolli, Luca Manzoni, and Gianpiero Cossarini
Geosci. Model Dev., 17, 7347–7364, https://doi.org/10.5194/gmd-17-7347-2024, https://doi.org/10.5194/gmd-17-7347-2024, 2024
Short summary
Short summary
Monitoring the ocean is essential for studying marine life and human impact. Our new software, PPCon, uses ocean data to predict key factors like nitrate and chlorophyll levels, which are hard to measure directly. By leveraging machine learning, PPCon offers more accurate and efficient predictions.
Rafael Santana, Richard Gorman, Emily Lane, Stuart Moore, Cyprien Bosserelle, Glen Reeve, and Christo Rautenbach
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-110, https://doi.org/10.5194/gmd-2024-110, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This research explores improving wave forecasts in New Zealand, particularly at Banks Peninsula and Baring Head. We used detailed models, finding that forecasts at Baring Head improved significantly due to its strong tidal currents, but changes at Banks Peninsula were minimal. The study demonstrates that local conditions greatly influence the effectiveness of wave prediction models, highlighting the need for tailored approaches in coastal forecasting to enhance accuracy in the predictions.
Renbo Pang, Fujiang Yu, Yuanyong Gao, Ye Yuan, Liang Yuan, and Zhiyi Gao
EGUsphere, https://doi.org/10.5194/egusphere-2024-2515, https://doi.org/10.5194/egusphere-2024-2515, 2024
Short summary
Short summary
The application of the distributed graph communication topology in earth models has been rarely studied. We tested and compared this topology with the traditional point-to-point communication method using a global wave model. We found that this topology is more efficient. Additionally, using this topology can greatly improve the performance of the wave model and could help improve the performance of other earth models.
Jan De Rydt, Nicolas C. Jourdain, Yoshihiro Nakayama, Mathias van Caspel, Ralph Timmermann, Pierre Mathiot, Xylar S. Asay-Davis, Hélène Seroussi, Pierre Dutrieux, Ben Galton-Fenzi, David Holland, and Ronja Reese
Geosci. Model Dev., 17, 7105–7139, https://doi.org/10.5194/gmd-17-7105-2024, https://doi.org/10.5194/gmd-17-7105-2024, 2024
Short summary
Short summary
Global climate models do not reliably simulate sea-level change due to ice-sheet–ocean interactions. We propose a community modelling effort to conduct a series of well-defined experiments to compare models with observations and study how models respond to a range of perturbations in climate and ice-sheet geometry. The second Marine Ice Sheet–Ocean Model Intercomparison Project will continue to lay the groundwork for including ice-sheet–ocean interactions in global-scale IPCC-class models.
Qian Wang, Yang Zhang, Fei Chai, Y. Joseph Zhang, and Lorenzo Zampieri
Geosci. Model Dev., 17, 7067–7081, https://doi.org/10.5194/gmd-17-7067-2024, https://doi.org/10.5194/gmd-17-7067-2024, 2024
Short summary
Short summary
We coupled an unstructured hydro-model with an advanced column sea ice model to meet the growing demand for increased resolution and complexity in unstructured sea ice models. Additionally, we present a novel tracer transport scheme for the sea ice coupled model and demonstrate that this scheme fulfills the requirements for conservation, accuracy, efficiency, and monotonicity in an idealized test. Our new coupled model also has good performance in realistic tests.
Adrien Garinet, Marine Herrmann, Patrick Marsaleix, and Juliette Pénicaud
Geosci. Model Dev., 17, 6967–6986, https://doi.org/10.5194/gmd-17-6967-2024, https://doi.org/10.5194/gmd-17-6967-2024, 2024
Short summary
Short summary
Mixing is a crucial aspect of the ocean, but its accurate representation in computer simulations is made challenging by errors that result in unwanted mixing, compromising simulation realism. Here we illustrate the spurious effect that tides can have on simulations of south-east Asia. Although they play an important role in determining the state of the ocean, they can increase numerical errors and make simulation outputs less realistic. We also provide insights into how to reduce these errors.
Mohamed Ayache, Jean-Claude Dutay, Anne Mouchet, Kazuyo Tachikawa, Camille Risi, and Gilles Ramstein
Geosci. Model Dev., 17, 6627–6655, https://doi.org/10.5194/gmd-17-6627-2024, https://doi.org/10.5194/gmd-17-6627-2024, 2024
Short summary
Short summary
Water isotopes (δ18O, δD) are one of the most widely used proxies in ocean climate research. Previous studies using water isotope observations and modelling have highlighted the importance of understanding spatial and temporal isotopic variability for a quantitative interpretation of these tracers. Here we present the first results of a high-resolution regional dynamical model (at 1/12° horizontal resolution) developed for the Mediterranean Sea, one of the hotspots of ongoing climate change.
Cara Nissen, Nicole S. Lovenduski, Mathew Maltrud, Alison R. Gray, Yohei Takano, Kristen Falcinelli, Jade Sauvé, and Katherine Smith
Geosci. Model Dev., 17, 6415–6435, https://doi.org/10.5194/gmd-17-6415-2024, https://doi.org/10.5194/gmd-17-6415-2024, 2024
Short summary
Short summary
Autonomous profiling floats have provided unprecedented observational coverage of the global ocean, but uncertainties remain about whether their sampling frequency and density capture the true spatiotemporal variability of physical, biogeochemical, and biological properties. Here, we present the novel synthetic biogeochemical float capabilities of the Energy Exascale Earth System Model version 2 and demonstrate their utility as a test bed to address these uncertainties.
Usama Kadri, Ali Abdolali, and Maxim Filimonov
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-139, https://doi.org/10.5194/gmd-2024-139, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
The GREAT v1.0 software introduces a novel tsunami warning technology for global real-time analysis. It leverages acoustic signals generated by tsunamis, which propagate faster than the tsunami itself, enabling real-time detection and assessment. Integrating various models, the software provides reliable and rapid assessment, mapping risk areas, and estimating tsunami amplitude. This advancement reduces false alarms and enhances global tsunami warning systems' accuracy and efficiency.
Iria Sala and Bingzhang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-130, https://doi.org/10.5194/gmd-2024-130, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Phytoplankton, tiny photosynthetic organisms, produce nearly half of Earth's oxygen. To analyze their physiology, diversity, and evolution in the ocean, we developed a model that treats phytoplankton as individual particles. Moreover, our model considers phytoplankton size, temperature, and light traits, and allows for mutations in phytoplankton cells. Thus, our model provides a valuable tool for advancing the study of phytoplankton physiology, diversity, and evolution.
Ye Yuan, Fujiang Yu, Zhi Chen, Xueding Li, Fang Hou, Yuanyong Gao, Zhiyi Gao, and Renbo Pang
Geosci. Model Dev., 17, 6123–6136, https://doi.org/10.5194/gmd-17-6123-2024, https://doi.org/10.5194/gmd-17-6123-2024, 2024
Short summary
Short summary
Accurate and timely forecasting of ocean waves is of great importance to the safety of marine transportation and offshore engineering. In this study, GPU-accelerated computing is introduced in WAve Modeling Cycle 6 (WAM6). With this effort, global high-resolution wave simulations can now run on GPUs up to tens of times faster than the currently available models can on a CPU node with results that are just as accurate.
Krysten Rutherford, Laura Bianucci, and William Floyd
Geosci. Model Dev., 17, 6083–6104, https://doi.org/10.5194/gmd-17-6083-2024, https://doi.org/10.5194/gmd-17-6083-2024, 2024
Short summary
Short summary
Nearshore ocean models often lack complete information about freshwater fluxes due to numerous ungauged rivers and streams. We tested a simple rain-based hydrological model as inputs into an ocean model of Quatsino Sound, Canada, with the aim of improving the representation of the land–ocean connection in the nearshore model. Through multiple tests, we found that the performance of the ocean model improved when providing 60 % or more of the freshwater inputs from the simple runoff model.
Neill Mackay, Taimoor Sohail, Jan David Zika, Richard G. Williams, Oliver Andrews, and Andrew James Watson
Geosci. Model Dev., 17, 5987–6005, https://doi.org/10.5194/gmd-17-5987-2024, https://doi.org/10.5194/gmd-17-5987-2024, 2024
Short summary
Short summary
The ocean absorbs carbon dioxide from the atmosphere, mitigating climate change, but estimates of the uptake do not always agree. There is a need to reconcile these differing estimates and to improve our understanding of ocean carbon uptake. We present a new method for estimating ocean carbon uptake and test it with model data. The method effectively diagnoses the ocean carbon uptake from limited data and therefore shows promise for reconciling different observational estimates.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 17, 5851–5882, https://doi.org/10.5194/gmd-17-5851-2024, https://doi.org/10.5194/gmd-17-5851-2024, 2024
Short summary
Short summary
The carbonate system is typically studied using measurements, but modeling can contribute valuable insights. Using a biogeochemical model, we propose a new representation of total alkalinity, dissolved inorganic carbon, pCO2, and pH in a highly dynamic Mediterranean coastal area, the Bay of Marseille, a useful addition to measurements. Through a detailed analysis of pCO2 and air–sea CO2 fluxes, we show that variations are strongly impacted by the hydrodynamic processes that affect the bay.
Xuanxuan Gao, Shuiqing Li, Dongxue Mo, Yahao Liu, and Po Hu
Geosci. Model Dev., 17, 5497–5509, https://doi.org/10.5194/gmd-17-5497-2024, https://doi.org/10.5194/gmd-17-5497-2024, 2024
Short summary
Short summary
Storm surges generate coastal inundation and expose populations and properties to danger. We developed a novel storm surge inundation model for efficient prediction. Estimates compare well with in situ measurements and results from a numerical model. The new model is a significant improvement on existing numerical models, with much higher computational efficiency and stability, which allows timely disaster prevention and mitigation.
Vincenzo de Toma, Daniele Ciani, Yassmin Hesham Essa, Chunxue Yang, Vincenzo Artale, Andrea Pisano, Davide Cavaliere, Rosalia Santoleri, and Andrea Storto
Geosci. Model Dev., 17, 5145–5165, https://doi.org/10.5194/gmd-17-5145-2024, https://doi.org/10.5194/gmd-17-5145-2024, 2024
Short summary
Short summary
This study explores methods to reconstruct diurnal variations in skin sea surface temperature in a model of the Mediterranean Sea. Our new approach, considering chlorophyll concentration, enhances spatial and temporal variations in the warm layer. Comparative analysis shows context-dependent improvements. The proposed "chlorophyll-interactive" method brings the surface net total heat flux closer to zero annually, despite a net heat loss from the ocean to the atmosphere.
Peter Mlakar, Antonio Ricchi, Sandro Carniel, Davide Bonaldo, and Matjaž Ličer
Geosci. Model Dev., 17, 4705–4725, https://doi.org/10.5194/gmd-17-4705-2024, https://doi.org/10.5194/gmd-17-4705-2024, 2024
Short summary
Short summary
We propose a new point-prediction model, the DEep Learning WAVe Emulating model (DELWAVE), which successfully emulates the Simulating WAves Nearshore model (SWAN) over synoptic to climate timescales. Compared to control climatology over all wind directions, the mismatch between DELWAVE and SWAN is generally small compared to the difference between scenario and control conditions, suggesting that the noise introduced by surrogate modelling is substantially weaker than the climate change signal.
Susanna Winkelbauer, Michael Mayer, and Leopold Haimberger
Geosci. Model Dev., 17, 4603–4620, https://doi.org/10.5194/gmd-17-4603-2024, https://doi.org/10.5194/gmd-17-4603-2024, 2024
Short summary
Short summary
Oceanic transports shape the global climate, but the evaluation and validation of this key quantity based on reanalysis and model data are complicated by the distortion of the used modelling grids and the large number of different grid types. We present two new methods that allow the calculation of oceanic fluxes of volume, heat, salinity, and ice through almost arbitrary sections for various models and reanalyses that are independent of the used modelling grids.
Xiaoyu Fan, Baylor Fox-Kemper, Nobuhiro Suzuki, Qing Li, Patrick Marchesiello, Peter P. Sullivan, and Paul S. Hall
Geosci. Model Dev., 17, 4095–4113, https://doi.org/10.5194/gmd-17-4095-2024, https://doi.org/10.5194/gmd-17-4095-2024, 2024
Short summary
Short summary
Simulations of the oceanic turbulent boundary layer using the nonhydrostatic CROCO ROMS and NCAR-LES models are compared. CROCO and the NCAR-LES are accurate in a similar manner, but CROCO’s additional features (e.g., nesting and realism) and its compressible turbulence formulation carry additional costs.
Jilian Xiong and Parker MacCready
Geosci. Model Dev., 17, 3341–3356, https://doi.org/10.5194/gmd-17-3341-2024, https://doi.org/10.5194/gmd-17-3341-2024, 2024
Short summary
Short summary
The new offline particle tracking package, Tracker v1.1, is introduced to the Regional Ocean Modeling System, featuring an efficient nearest-neighbor algorithm to enhance particle-tracking speed. Its performance was evaluated against four other tracking packages and passive dye. Despite unique features, all packages yield comparable results. Running multiple packages within the same circulation model allows comparison of their performance and ease of use.
Sylvain Cailleau, Laurent Bessières, Léonel Chiendje, Flavie Dubost, Guillaume Reffray, Jean-Michel Lellouche, Simon van Gennip, Charly Régnier, Marie Drevillon, Marc Tressol, Matthieu Clavier, Julien Temple-Boyer, and Léo Berline
Geosci. Model Dev., 17, 3157–3173, https://doi.org/10.5194/gmd-17-3157-2024, https://doi.org/10.5194/gmd-17-3157-2024, 2024
Short summary
Short summary
In order to improve Sargassum drift forecasting in the Caribbean area, drift models can be forced by higher-resolution ocean currents. To this goal a 3 km resolution regional ocean model has been developed. Its assessment is presented with a particular focus on the reproduction of fine structures representing key features of the Caribbean region dynamics and Sargassum transport. The simulated propagation of a North Brazil Current eddy and its dissipation was found to be quite realistic.
Gaetano Porcile, Anne-Claire Bennis, Martial Boutet, Sophie Le Bot, Franck Dumas, and Swen Jullien
Geosci. Model Dev., 17, 2829–2853, https://doi.org/10.5194/gmd-17-2829-2024, https://doi.org/10.5194/gmd-17-2829-2024, 2024
Short summary
Short summary
Here a new method of modelling the interaction between ocean currents and waves is presented. We developed an advanced coupling of two models, one for ocean currents and one for waves. In previous couplings, some wave-related calculations were based on simplified assumptions. Our method uses more complex calculations to better represent wave–current interactions. We tested it in a macro-tidal coastal area and found that it significantly improves the model accuracy, especially during storms.
Colette Gabrielle Kerry, Moninya Roughan, Shane Keating, David Gwyther, Gary Brassington, Adil Siripatana, and Joao Marcos A. C. Souza
Geosci. Model Dev., 17, 2359–2386, https://doi.org/10.5194/gmd-17-2359-2024, https://doi.org/10.5194/gmd-17-2359-2024, 2024
Short summary
Short summary
Ocean forecasting relies on the combination of numerical models and ocean observations through data assimilation (DA). Here we assess the performance of two DA systems in a dynamic western boundary current, the East Australian Current, across a common modelling and observational framework. We show that the more advanced, time-dependent method outperforms the time-independent method for forecast horizons of 5 d. This advocates the use of advanced methods for highly variable oceanic regions.
Ivan Hernandez, Leidy M. Castro-Rosero, Manuel Espino, and Jose M. Alsina Torrent
Geosci. Model Dev., 17, 2221–2245, https://doi.org/10.5194/gmd-17-2221-2024, https://doi.org/10.5194/gmd-17-2221-2024, 2024
Short summary
Short summary
The LOCATE numerical model was developed to conduct Lagrangian simulations of the transport and dispersion of marine debris at coastal scales. High-resolution hydrodynamic data and a beaching module that used particle distance to the shore for land–water boundary detection were used on a realistic debris discharge scenario comparing hydrodynamic data at various resolutions. Coastal processes and complex geometric structures were resolved when using nested grids and distance-to-shore beaching.
Ngoc B. Trinh, Marine Herrmann, Caroline Ulses, Patrick Marsaleix, Thomas Duhaut, Thai To Duy, Claude Estournel, and R. Kipp Shearman
Geosci. Model Dev., 17, 1831–1867, https://doi.org/10.5194/gmd-17-1831-2024, https://doi.org/10.5194/gmd-17-1831-2024, 2024
Short summary
Short summary
A high-resolution model was built to study the South China Sea (SCS) water, heat, and salt budgets. Model performance is demonstrated by comparison with observations and simulations. Important discards are observed if calculating offline, instead of online, lateral inflows and outflows of water, heat, and salt. The SCS mainly receives water from the Luzon Strait and releases it through the Mindoro, Taiwan, and Karimata straits. SCS surface interocean water exchanges are driven by monsoon winds.
Louis Thiry, Long Li, Guillaume Roullet, and Etienne Mémin
Geosci. Model Dev., 17, 1749–1764, https://doi.org/10.5194/gmd-17-1749-2024, https://doi.org/10.5194/gmd-17-1749-2024, 2024
Short summary
Short summary
We present a new way of solving the quasi-geostrophic (QG) equations, a simple set of equations describing ocean dynamics. Our method is solely based on the numerical methods used to solve the equations and requires no parameter tuning. Moreover, it can handle non-rectangular geometries, opening the way to study QG equations on realistic domains. We release a PyTorch implementation to ease future machine-learning developments on top of the presented method.
Zheqi Shen, Yihao Chen, Xiaojing Li, and Xunshu Song
Geosci. Model Dev., 17, 1651–1665, https://doi.org/10.5194/gmd-17-1651-2024, https://doi.org/10.5194/gmd-17-1651-2024, 2024
Short summary
Short summary
Parameter estimation is the process that optimizes model parameters using observations, which could reduce model errors and improve forecasting. In this study, we conducted parameter estimation experiments using the CESM and the ensemble adjustment Kalman filter. The obtained initial conditions and parameters are used to perform ensemble forecast experiments for ENSO forecasting. The results revealed that parameter estimation could reduce analysis errors and improve ENSO forecast skills.
Ali Abdolali, Saeideh Banihashemi, Jose Henrique Alves, Aron Roland, Tyler J. Hesser, Mary Anderson Bryant, and Jane McKee Smith
Geosci. Model Dev., 17, 1023–1039, https://doi.org/10.5194/gmd-17-1023-2024, https://doi.org/10.5194/gmd-17-1023-2024, 2024
Short summary
Short summary
This article presents an overview of the development and implementation of Great Lake Wave Unstructured (GLWUv2.0), including the core model and workflow design and development. The validation was conducted against in situ data for the re-forecasted duration for summer and wintertime (ice season). The article describes the limitations and challenges encountered in the operational environment and the path forward for the next generation of wave forecast systems in enclosed basins like the GL.
Qiang Wang, Qi Shu, Alexandra Bozec, Eric P. Chassignet, Pier Giuseppe Fogli, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Nikolay Koldunov, Julien Le Sommer, Yiwen Li, Pengfei Lin, Hailong Liu, Igor Polyakov, Patrick Scholz, Dmitry Sidorenko, Shizhu Wang, and Xiaobiao Xu
Geosci. Model Dev., 17, 347–379, https://doi.org/10.5194/gmd-17-347-2024, https://doi.org/10.5194/gmd-17-347-2024, 2024
Short summary
Short summary
Increasing resolution improves model skills in simulating the Arctic Ocean, but other factors such as parameterizations and numerics are at least of the same importance for obtaining reliable simulations.
Andrew C. Ross, Charles A. Stock, Alistair Adcroft, Enrique Curchitser, Robert Hallberg, Matthew J. Harrison, Katherine Hedstrom, Niki Zadeh, Michael Alexander, Wenhao Chen, Elizabeth J. Drenkard, Hubert du Pontavice, Raphael Dussin, Fabian Gomez, Jasmin G. John, Dujuan Kang, Diane Lavoie, Laure Resplandy, Alizée Roobaert, Vincent Saba, Sang-Ik Shin, Samantha Siedlecki, and James Simkins
Geosci. Model Dev., 16, 6943–6985, https://doi.org/10.5194/gmd-16-6943-2023, https://doi.org/10.5194/gmd-16-6943-2023, 2023
Short summary
Short summary
We evaluate a model for northwest Atlantic Ocean dynamics and biogeochemistry that balances high resolution with computational economy by building on the new regional features in the MOM6 ocean model and COBALT biogeochemical model. We test the model's ability to simulate impactful historical variability and find that the model simulates the mean state and variability of most features well, which suggests the model can provide information to inform living-marine-resource applications.
Luca Arpaia, Christian Ferrarin, Marco Bajo, and Georg Umgiesser
Geosci. Model Dev., 16, 6899–6919, https://doi.org/10.5194/gmd-16-6899-2023, https://doi.org/10.5194/gmd-16-6899-2023, 2023
Short summary
Short summary
We propose a discrete multilayer shallow water model based on z-layers which, thanks to the insertion and removal of surface layers, can deal with an arbitrarily large tidal oscillation independently of the vertical resolution. The algorithm is based on a two-step procedure used in numerical simulations with moving boundaries (grid movement followed by a grid topology change, that is, the insertion/removal of surface layers), which avoids the appearance of very thin surface layers.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, France Van Wambeke, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 16, 6701–6739, https://doi.org/10.5194/gmd-16-6701-2023, https://doi.org/10.5194/gmd-16-6701-2023, 2023
Short summary
Short summary
While several studies have shown that mixotrophs play a crucial role in the carbon cycle, the impact of environmental forcings on their dynamics remains poorly investigated. Using a biogeochemical model that considers mixotrophs, we study the impact of light and nutrient concentration on the ecosystem composition in a highly dynamic Mediterranean coastal area: the Bay of Marseille. We show that mixotrophs cope better with oligotrophic conditions compared to strict auto- and heterotrophs.
Trygve Halsne, Kai Håkon Christensen, Gaute Hope, and Øyvind Breivik
Geosci. Model Dev., 16, 6515–6530, https://doi.org/10.5194/gmd-16-6515-2023, https://doi.org/10.5194/gmd-16-6515-2023, 2023
Short summary
Short summary
Surface waves that propagate in oceanic or coastal environments get influenced by their surroundings. Changes in the ambient current or the depth profile affect the wave propagation path, and the change in wave direction is called refraction. Some analytical solutions to the governing equations exist under ideal conditions, but for realistic situations, the equations must be solved numerically. Here we present such a numerical solver under an open-source license.
Jiangyu Li, Shaoqing Zhang, Qingxiang Liu, Xiaolin Yu, and Zhiwei Zhang
Geosci. Model Dev., 16, 6393–6412, https://doi.org/10.5194/gmd-16-6393-2023, https://doi.org/10.5194/gmd-16-6393-2023, 2023
Short summary
Short summary
Ocean surface waves play an important role in the air–sea interface but are rarely activated in high-resolution Earth system simulations due to their expensive computational costs. To alleviate this situation, this paper designs a new wave modeling framework with a multiscale grid system. Evaluations of a series of numerical experiments show that it has good feasibility and applicability in the WAVEWATCH III model, WW3, and can achieve the goals of efficient and high-precision wave simulation.
Cited articles
Amadori, M., Morini, G., Piccolroaz, S., and Toffolon, M.: Involving citizens in hydrodynamic research: A combined local knowledge – numerical experiment on Lake Garda, Italy, Sci. Total Environ., 722, 137720, https://doi.org/10.1016/j.scitotenv.2020.137720, 2020. a, b
Amadori, M., Giovannini, L., Toffolon, M., van Haren, H., and Dijkstra, H.: Multi-scale evaluation of a 3D lake model forced by an atmospheric model against standard monitoring data, Environ. Modell. Softw., 139, 105017, https://doi.org/10.1016/j.envsoft.2021.105017, 2021. a, b, c
Amadori, M., Rahaghi, A. I., Bouffard, D., Toffolon, M., and Runnals, J.: Repository for: “Using automatic calibration to improve the physics behind complex numerical models: An example from a 3D lake model”, Zenodo Repository [data set], https://doi.org/10.5281/zenodo.13712738, 2024. a
Baar, A. W., Boechat Albernaz, M., van Dijk, W. M., and Kleinhans, M. G.: Critical dependence of morphodynamic models of fluvial and tidal systems on empirical downslope sediment transport, Nat. Commun., 10, 4903, https://doi.org/10.1038/s41467-019-12753-x, 2019. a
Baracchini, T., Chu, P. Y., Šukys, J., Lieberherr, G., Wunderle, S., Wüest, A., and Bouffard, D.: Data assimilation of in situ and satellite remote sensing data to 3D hydrodynamic lake models: a case study using Delft3D-FLOW v4.03 and OpenDA v2.4, Geosci. Model Dev., 13, 1267–1284, https://doi.org/10.5194/gmd-13-1267-2020, 2020a. a
Baracchini, T., Hummel, S., Verlaan, M., Cimatoribus, A., Wüest, A., and Bouffard, D.: An automated calibration framework and open source tools for 3D lake hydrodynamic models, Environ. Modell. Softw., 134, 104787, https://doi.org/10.1016/j.envsoft.2020.104787, 2020b. a
Biemond, B., Amadori, M., Toffolon, M., Piccolroaz, S., van Haren, H., and Dijkstra, H. A.: Deep-mixing and deep-cooling events in Lake Garda: Simulation and mechanisms, J. Limnol., 80, 2, https://doi.org/10.4081/jlimnol.2021.2010, 2021. a
Blumberg, A. and Mellor, G.: A description of a three-dimensional coastal ocean circulation model, three-dimensional coastal ocean models, Coast. Estuar. Sci., 4, 1–16, https://doi.org/10.1029/CO004p0001, 1987. a
Bouffard, D., Runnalls, J., Amadori, M., Irani Rahaghi, A., and Toffolon, M.: Modified surface heat flux in Delft3D, Zenodo [code], https://doi.org/10.5281/zenodo.14989442, 2025. a
Castelletti, A., Pianosi, F., Soncini-Sessa, R., and Antenucci, J. P.: A multiobjective response surface approach for improved water quality planning in lakes and reservoirs, Water Resour. Res., 46, 6, https://doi.org/10.1029/2009WR008389, 2010. a
Chanudet, V., Fabre, V., and van der Kaaij, T.: Application of a three-dimensional hydrodynamic model to the Nam Theun 2 Reservoir (Lao PDR), J. Great Lakes Res., 38, 260–269, https://doi.org/10.1016/j.jglr.2012.01.008, 2012. a
Chen, C., Liu, H., and Beardsley, R.: An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries, J. Atmos. Ocean. Technol., 20, 159–186, https://doi.org/10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2, 2003. a
Cole, T. and Wells, S.: CE-QUAL-W2: A Two-Dimensional, Laterally Averaged, Hydrodynamic and Water Quality Model, Version 3.0. User Manual, Instruction Report EL-2000, US Army Engineering and Research Development Center, Vicksburg, 26 pp., https://apps.dtic.mil/sti/tr/pdf/ADA380274.pdf (last access: 29 May 2025), 2015. a, b
Dake, J. M. K. and Harleman, D. R. F.: Thermal stratification in lakes: Analytical and laboratory studies, Water Resour. Res., 5, 484–495, https://doi.org/10.1029/WR005i002p00484, 1969. a
Dissanayake, P., Hofmann, H., and Peeters, F.: Comparison of results from two 3D hydrodynamic models with field data: internal seiches and horizontal currents, Inland Waters, 9, 239–260, https://doi.org/10.1080/20442041.2019.1580079, 2019. a
El Serafy, G., Gerritsen, H., Hummel, S., Weerts, A., Mynett, A., and Tanaka, M.: Application of data assimilation in portable operational forecasting systems—the DATools assimilation environment, Ocean Dynam., 57, 485–499, https://doi.org/10.1007/s10236-007-0124-3, 2007. a
Fang, X. and Stefan, H. G.: Long-term lake water temperature and ice cover simulations/measurements, Cold Reg. Sci. Technol., 24, 289–304, https://doi.org/10.1016/0165-232X(95)00019-8, 1996. a
Garcia, M., Ramirez, I., Verlaan, M., and Castillo, J.: Application of a three-dimensional hydrodynamic model for San Quintin Bay, B.C., Mexico. Validation and calibration using OpenDA, J. Comput. Appl. Mathe., 273, 428–437, https://doi.org/10.1016/j.cam.2014.05.003, 2015. a
Goudsmit, G.-H., Burchard, H., Peeters, F., and Wüest, A.: Application of k-ϵ turbulence models to enclosed basins: The role of internal seiches, J. Geophys. Res., 107, 23-1–23-13, https://doi.org/10.1029/2001JC000954, 2002. a, b
Hipsey, M. R., Bruce, L. C., Boon, C., Busch, B., Carey, C. C., Hamilton, D. P., Hanson, P. C., Read, J. S., de Sousa, E., Weber, M., and Winslow, L. A.: A General Lake Model (GLM 3.0) for linking with high-frequency sensor data from the Global Lake Ecological Observatory Network (GLEON), Geosci. Model Dev., 12, 473–523, https://doi.org/10.5194/gmd-12-473-2019, 2019. a
Joehnk, K. and Umlauf, L.: Modelling the metalimnetic oxygen minimum in a medium sized alpine lake, Ecol. Modell., 136, 67–80, https://doi.org/10.1016/S0304-3800(00)00381-1, 2001. a
Ma, J., Li, R., Zheng, H., Li, W., Rao, K., Yang, Y., and Wu, B.: Multivariate adaptive regression splines-assisted approximate Bayesian computation for calibration of complex hydrological models, J. Hydroinfo., 26, 503–518, https://doi.org/10.2166/hydro.2024.232, 2024. a
Madec, G., Bell, M., Blaker, A., Bricaud, C., Bruciaferri, D., Castrillo, M., Calvert, D., Chanut, J., Clementi, E., Coward, A., Epicoco, I., Éthé, C., Ganderton, J., Harle, J., Hutchinson, K., Iovino, D., Lea, D., Lovato, T., Martin, M., Martin, N., Mele, F., Martins, D., Masson, S., Mathiot, P., Mele, F., Mocavero, S., Müller, S., Nurser, A. G., Paronuzzi, S., Peltier, M., Person, R., Rousset, C., Rynders, S., Samson, G., Téchené, S., Vancoppenolle, M., and Wilson, C.: NEMO Ocean Engine Reference Manual, Zenodo, https://doi.org/10.5281/zenodo.8167700, 2023. a
Marshall, J., Adcroft, A., Hill, C., Perelman, L., and Heisey, C.: A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers, J. Geophys. Res.-Oceans, 102, 5753–5766, https://doi.org/10.1029/96JC02775, 1997. a
Morel, A. and Antoine, D.: Heating Rate within the Upper Ocean in Relation to its Bio–optical State, J. Phys. Oceanogr., 24, 1652–1665, https://doi.org/10.1175/1520-0485(1994)024<1652:HRWTUO>2.0.CO;2, 1994. a
Piccioni, F., Casenave, C., Lemaire, B. J., Le Moigne, P., Dubois, P., and Vinçon-Leite, B.: The thermal response of small and shallow lakes to climate change: new insights from 3D hindcast modelling, Earth Syst. Dynam., 12, 439–456, https://doi.org/10.5194/esd-12-439-2021, 2021. a, b
Piccolroaz, S., Amadori, M., Toffolon, M., and Dijkstra, H. A.: Importance of planetary rotation for ventilation processes in deep elongated lakes: Evidence from Lake Garda (Italy), Sci. Rep., 9, 2045–2322, https://doi.org/10.1038/s41598-019-44730-1, 2019. a, b
Piccolroaz, S., Zhu, S., Ladwig, R., Carrea, L., Oliver, S., Piotrowski, A. P., Ptak, M., Shinohara, R., Sojka, M., Woolway, R. I., and Zhu, D. Z.: Lake Water Temperature Modeling in an Era of Climate Change: Data Sources, Models, and Future Prospects, Rev. Geophys., 62, e2023RG000816, https://doi.org/10.1029/2023RG000816, 2024. a
Poole, H. H. and Atkins, W. R. G.: Photo-electric Measurements of Submarine Illumination throughout the Year, J. Mar. Biol. Assoc. UK, 16, 297–324, https://doi.org/10.1017/S0025315400029829, 1929. a
Pothoven, S. A. and Vanderploeg, H. A.: Seasonal patterns for Secchi depth, chlorophyll a, total phosphorus, and nutrient limitation differ between nearshore and offshore in Lake Michigan, J. Great Lakes Res., 46, 519–527, https://doi.org/10.1016/j.jglr.2020.03.013, 2020. a
Rahaghi, A. I., Odermatt, D., Anneville, O., Steiner, O. S., Reiss, R. S., Amadori, M., Toffolon, M., Jacquet, S., Harmel, T., Werther, M., Soulignac, F., Dambrine, E., Jézéquel, D., Hatté, C., Tran-Khac, V., Rasconi, S., Rimet, F., and Bouffard, D.: Combined Earth observations reveal the sequence of conditions leading to a large algal bloom in Lake Geneva, Commun. Earth Environ., 5, 229, https://doi.org/10.1038/s43247-024-01351-5, 2024. a
Ralston, M. L. and Jennrich, R. I.: Dud, A Derivative-Free Algorithm for Nonlinear Least Squares, Technometrics, 20, 7–14, https://doi.org/10.1080/00401706.1978.10489610, 1978. a
Schmid, M. and Köster, O.: Excess warming of a Central European lake driven by solar brightening, Water Resour. Res., 52, 8103–8116, https://doi.org/10.1002/2016WR018651, 2016. a
Schwindt, S., Callau Medrano, S., Mouris, K., Beckers, F., Haun, S., Nowak, W., Wieprecht, S., and Oladyshkin, S.: Bayesian calibration points to misconceptions in three-dimensional hydrodynamic reservoir modeling, Water Resour. Res., 59, e2022WR033660, https://doi.org/10.1029/2022WR033660, 2022. a, b
Secchi, A.: Relazione delle esperienze fatte a bordo della pontificia pirocorvetta l’Immacolata concezione per determinare la trasparenza del mare; Memoria del P. A. Secchi, Il Nuovo Cimento (1855–1868), 20, 205–238, https://doi.org/10.1007/BF02726911, 1864. a
Shatwell, T., Thiery, W., and Kirillin, G.: Future projections of temperature and mixing regime of European temperate lakes, Hydrol. Earth Syst. Sci., 23, 1533–1551, https://doi.org/10.5194/hess-23-1533-2019, 2019. a
Shchepetkin, A. F. and McWilliams, J. C.: The regional oceanic modeling system (ROMS): a split-explicit, free-surface, topography-following-coordinate oceanic model, Ocean Modell., 9, 347–404, https://doi.org/10.1016/j.ocemod.2004.08.002, 2005. a
Smagorinsky, J.: “General circulation experiments with the primitive equations”, Mon. Weather Rev., 91, 99–164, https://doi.org/10.1175/1520-0493(1963)091<0099:GCEWTP>2.3.CO;2, 1963. a
Soulignac, F., Vinçon-Leite, B., Lemaire, B., Martins, J. R., Bonhomme, C., Dubois, P., Mezemate, Y., Tchiguirinskaia, I., Schertzer, D., and Tassin, B.: Performance Assessment of a 3D Hydrodynamic Model Using High Temporal Resolution Measurements in a Shallow Urban Lake, Environ. Modell. Assess., 22, 1–14, https://doi.org/10.1007/s10666-017-9548-4, 2017. a, b, c
Soulignac, F., Danis, P.-A., Bouffard, D., Chanudet, V., Dambrine, E., Guénand, Y., Harmel, T., Ibelings, B. W., Trevisan, D., Uittenbogaard, R., and Anneville, O.: Using 3D modeling and remote sensing capabilities for a better understanding of spatio-temporal heterogeneities of phytoplankton abundance in large lakes, J. Great Lakes Res., 44, 756–764, https://doi.org/10.1016/j.jglr.2018.05.008, 2018. a, b
Stepanenko, V. and Lykossov, V.: Numerical modeling of the heat and moisture transport in a lake-soil system, Russian Meteorology and Hydrology, 69–75 pp., https://istina.msu.ru/media/publications/articles/45f/090/479160/StepanenkoLykosov2005.pdf (last access: 29 May 2025), 2005. a
Thiery, W., Stepanenko, V. M., Fang, X., Jöhnk, K. D., Li, Z., Martynov, A., Perroud, M., Subin, Z. M., Darchambea, F., Mironov, D., and Lipzig, N. P. M. V.: LakeMIP Kivu: evaluating the representation of a large, deep tropical lake by a set of one-dimensional lake models, Tellus A, 66, 21390, https://doi.org/10.3402/tellusa.v66.21390, 2014. a, b
Tritthart, M., Vanzo, D., Chavarrías, V., Siviglia, A., Sloff, K., and Mosselman, E.: Why do published models for fluvial and estuarine morphodynamics use unrealistic representations of the effects of transverse bed slopes?, Adv. Water Res., 193, 104831, https://doi.org/10.1016/j.advwatres.2024.104831, 2024. a
Voudouri, A., Avgoustoglou, E., and Kaufmann, P.: Impacts of Observational Data Assimilation on Operational Forecasts, in: Perspectives on Atmospheric Sciences, edited by: Karacostas, T., Bais, A., and Nastos, P. T., 143–149 pp., Springer International Publishing, Cham, https://doi.org/10.1007/978-3-319-35095-0_21, 2017. a
Wahl, B. and Peeters, F.: Effect of climatic changes on stratification and deep-water renewal in Lake Constance assessed by sensitivity studies with a 3D hydrodynamic model, Limnol. Oceanogr., 59, 1035–1052, https://doi.org/10.4319/lo.2014.59.3.1035, 2014. a, b, c, d
Wüest, A. and Lorke, A.: Small-scale hydrodynamics in lakes, Annu. Rev. Fluid Mech., 35, 373–412, https://doi.org/10.1146/annurev.fluid.35.101101.161220, 2003. a
Xia, W., Shoemaker, C., Akhtar, T., and Nguyen, M.-T.: Efficient Parallel Surrogate Optimization Algorithm and Framework with Application to Parameter Calibration of Computationally Expensive Three-dimensional Hydrodynamic Lake PDE Models, Environ. Model. Softw., 135, 104910, https://doi.org/10.1016/j.envsoft.2020.104910, 2021. a, b, c, d, e, f
Zaneveld, J. and Spinrad, R.: An arc tangent model of irradiance in the sea, J. Geophys. Res., 85, 4919–4922, https://doi.org/10.1029/JC085iC09p04919, 1980. a, b
Zolfaghari, K., Duguay, C. R., and Kheyrollah Pour, H.: Satellite-derived light extinction coefficient and its impact on thermal structure simulations in a 1-D lake model, Hydrol. Earth Syst. Sci., 21, 377–391, https://doi.org/10.5194/hess-21-377-2017, 2017. a
Short summary
Models simplify reality using assumptions, which can sometimes introduce flaws and affect their accuracy. Properly calibrating model parameters is essential, and although automated tools can speed up this process, they may occasionally produce incorrect values due to inconsistencies in the model. We demonstrate that by carefully applying automated tools, we were able to identify and correct a flaw in a widely used model for lake environments.
Models simplify reality using assumptions, which can sometimes introduce flaws and affect their...