Articles | Volume 17, issue 17
https://doi.org/10.5194/gmd-17-6683-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-6683-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
12 Sep 2024
Model description paper |
| 12 Sep 2024
| 12 Sep 2024
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Guohua Liu
CORRESPONDING AUTHOR
Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
Jiangsu Key Laboratory of Agricultural Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
Mirco Migliavacca
European Commission – Joint Research Centre Via Enrico Fermi, Ispra (VA), 21027, Italy
Christian Reimers
Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
Basil Kraft
Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
Markus Reichstein
Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
Andrew D. Richardson
School of Informatics, Computing, and Cyber Systems, and Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ 86011, United States
Lisa Wingate
INRAE, Bordeaux Sciences Agro, UMR ISPA, Villenave d'Ornon, 33140, France
Nicolas Delpierre
Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique et Evolution, 91190, Gif-sur-Yvette, France
Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
Alexander J. Winkler
Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
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Friedrich J. Bohn, Ana Bastos, Romina Martin, Anja Rammig, Niak Sian Koh, Giles B. Sioen, Bram Buscher, Louise Carver, Fabrice DeClerck, Moritz Drupp, Robert Fletcher, Matthew Forrest, Alexandros Gasparatos, Alex Godoy-Faúndez, Gregor Hagedorn, Martin C. Hänsel, Jessica Hetzer, Thomas Hickler, Cornelia B. Krug, Stasja Koot, Xiuzhen Li, Amy Luers, Shelby Matevich, H. Damon Matthews, Ina C. Meier, Mirco Migliavacca, Awaz Mohamed, Sungmin O, David Obura, Ben Orlove, Rene Orth, Laura Pereira, Markus Reichstein, Lerato Thakholi, Peter H. Verburg, and Yuki Yoshida
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We developed a machine learning model that accounts for the memory effects of soil moisture and vegetation to predict Evaporative Fraction (EF) without relying on soil moisture as a direct input. The model accurately predicts EF during dry periods for the unseen sites, highlighting the key of meteorological memory effects. The learned memory effect related to rooting depth and soil water holding capacity could potentially serve as proxies for assessing the plant water stress.
Javier Pacheco-Labrador, Ulisse Gomarasca, Daniel E. Pabon-Moreno, Wantong Li, Mirco Migliavacca, Martin Jung, and Gregory Duveiller
EGUsphere, https://doi.org/10.5194/egusphere-2025-318, https://doi.org/10.5194/egusphere-2025-318, 2025
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Measuring biodiversity is necessary to assess its loss, evolution, and role in ecosystem functions. Satellites image the whole terrestrial surface and could cost-efficiently map plant diversity globally. However, developing the necessary methods lacks consistent and sufficient field measurements. Thus, we propose using a simulation tool that generates virtual ecosystems, with species properties and functions varying in response to meteorology and the respective remote sensing imagery.
Marco Girardello, Gonzalo Oton, Matteo Piccardo, Mark Pickering, Agata Elia, Guido Ceccherini, Mariano Garcia, Mirco Migliavacca, and Alessandro Cescatti
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-471, https://doi.org/10.5194/essd-2024-471, 2025
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Our research addresses the significant challenge of assessing forest structural diversity over large spatial scales, which is crucial for understanding the relationship between canopy structure, biodiversity, and ecosystem functioning. The advent of spaceborne LiDAR sensors, such as GEDI, has revolutionised the ability to obtain high-quality information on forest structural parameters. Our contribution provides a novel, spatially-explicit dataset on eight forest structural diversity metrics.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Jiří Dušek, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
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Jasper M. C. Denissen, Adriaan J. Teuling, Sujan Koirala, Markus Reichstein, Gianpaolo Balsamo, Martha M. Vogel, Xin Yu, and René Orth
Earth Syst. Dynam., 15, 717–734, https://doi.org/10.5194/esd-15-717-2024, https://doi.org/10.5194/esd-15-717-2024, 2024
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Heat extremes have severe implications for human health and ecosystems. Heat extremes are mostly introduced by large-scale atmospheric circulation but can be modulated by vegetation. Vegetation with access to water uses solar energy to evaporate water into the atmosphere. Under dry conditions, water may not be available, suppressing evaporation and heating the atmosphere. Using climate projections, we show that regionally less water is available for vegetation, intensifying future heat extremes.
Bjorn Stevens, Stefan Adami, Tariq Ali, Hartwig Anzt, Zafer Aslan, Sabine Attinger, Jaana Bäck, Johanna Baehr, Peter Bauer, Natacha Bernier, Bob Bishop, Hendryk Bockelmann, Sandrine Bony, Guy Brasseur, David N. Bresch, Sean Breyer, Gilbert Brunet, Pier Luigi Buttigieg, Junji Cao, Christelle Castet, Yafang Cheng, Ayantika Dey Choudhury, Deborah Coen, Susanne Crewell, Atish Dabholkar, Qing Dai, Francisco Doblas-Reyes, Dale Durran, Ayoub El Gaidi, Charlie Ewen, Eleftheria Exarchou, Veronika Eyring, Florencia Falkinhoff, David Farrell, Piers M. Forster, Ariane Frassoni, Claudia Frauen, Oliver Fuhrer, Shahzad Gani, Edwin Gerber, Debra Goldfarb, Jens Grieger, Nicolas Gruber, Wilco Hazeleger, Rolf Herken, Chris Hewitt, Torsten Hoefler, Huang-Hsiung Hsu, Daniela Jacob, Alexandra Jahn, Christian Jakob, Thomas Jung, Christopher Kadow, In-Sik Kang, Sarah Kang, Karthik Kashinath, Katharina Kleinen-von Königslöw, Daniel Klocke, Uta Kloenne, Milan Klöwer, Chihiro Kodama, Stefan Kollet, Tobias Kölling, Jenni Kontkanen, Steve Kopp, Michal Koran, Markku Kulmala, Hanna Lappalainen, Fakhria Latifi, Bryan Lawrence, June Yi Lee, Quentin Lejeun, Christian Lessig, Chao Li, Thomas Lippert, Jürg Luterbacher, Pekka Manninen, Jochem Marotzke, Satoshi Matsouoka, Charlotte Merchant, Peter Messmer, Gero Michel, Kristel Michielsen, Tomoki Miyakawa, Jens Müller, Ramsha Munir, Sandeep Narayanasetti, Ousmane Ndiaye, Carlos Nobre, Achim Oberg, Riko Oki, Tuba Özkan-Haller, Tim Palmer, Stan Posey, Andreas Prein, Odessa Primus, Mike Pritchard, Julie Pullen, Dian Putrasahan, Johannes Quaas, Krishnan Raghavan, Venkatachalam Ramaswamy, Markus Rapp, Florian Rauser, Markus Reichstein, Aromar Revi, Sonakshi Saluja, Masaki Satoh, Vera Schemann, Sebastian Schemm, Christina Schnadt Poberaj, Thomas Schulthess, Cath Senior, Jagadish Shukla, Manmeet Singh, Julia Slingo, Adam Sobel, Silvina Solman, Jenna Spitzer, Philip Stier, Thomas Stocker, Sarah Strock, Hang Su, Petteri Taalas, John Taylor, Susann Tegtmeier, Georg Teutsch, Adrian Tompkins, Uwe Ulbrich, Pier-Luigi Vidale, Chien-Ming Wu, Hao Xu, Najibullah Zaki, Laure Zanna, Tianjun Zhou, and Florian Ziemen
Earth Syst. Sci. Data, 16, 2113–2122, https://doi.org/10.5194/essd-16-2113-2024, https://doi.org/10.5194/essd-16-2113-2024, 2024
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To manage Earth in the Anthropocene, new tools, new institutions, and new forms of international cooperation will be required. Earth Virtualization Engines is proposed as an international federation of centers of excellence to empower all people to respond to the immense and urgent challenges posed by climate change.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Martin Jung, Jacob Nelson, Mirco Migliavacca, Tarek El-Madany, Dario Papale, Markus Reichstein, Sophia Walther, and Thomas Wutzler
Biogeosciences, 21, 1827–1846, https://doi.org/10.5194/bg-21-1827-2024, https://doi.org/10.5194/bg-21-1827-2024, 2024
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We present a methodology to detect inconsistencies in perhaps the most important data source for measurements of ecosystem–atmosphere carbon, water, and energy fluxes. We expect that the derived consistency flags will be relevant for data users and will help in improving our understanding of and our ability to model ecosystem–climate interactions.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Samuel Upton, Markus Reichstein, Fabian Gans, Wouter Peters, Basil Kraft, and Ana Bastos
Atmos. Chem. Phys., 24, 2555–2582, https://doi.org/10.5194/acp-24-2555-2024, https://doi.org/10.5194/acp-24-2555-2024, 2024
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Data-driven eddy-covariance upscaled estimates of the global land–atmosphere net CO2 exchange (NEE) show important mismatches with regional and global estimates based on atmospheric information. To address this, we create a model with a dual constraint based on bottom-up eddy-covariance data and top-down atmospheric inversion data. Our model overcomes shortcomings of each approach, producing improved NEE estimates from local to global scale, helping to reduce uncertainty in the carbon budget.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Hui Yang, Krzysztof Stereńczak, Zbigniew Karaszewski, and Nuno Carvalhais
EGUsphere, https://doi.org/10.5194/egusphere-2023-2691, https://doi.org/10.5194/egusphere-2023-2691, 2023
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Wood density is crucial for ecological and carbon stock assessment, yet its labor-intensive analysis limits studies across species and spaces. Our study, based on 48,000 samples from Central Europe, reveals that, even without species information, 91% of inter-tree variations can be predicted by vegetation indexes, topography, and soil texture. Importantly, we highlight neglected intra-tree variation, showing substantial variations vertically along the height and radially from the center to bark.
Chenwei Xiao, Sönke Zaehle, Hui Yang, Jean-Pierre Wigneron, Christiane Schmullius, and Ana Bastos
Earth Syst. Dynam., 14, 1211–1237, https://doi.org/10.5194/esd-14-1211-2023, https://doi.org/10.5194/esd-14-1211-2023, 2023
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Ecosystem resistance reflects their susceptibility during adverse conditions and can be changed by land management. We estimate ecosystem resistance to drought and temperature globally. We find a higher resistance to drought in forests compared to croplands and an evident loss of resistance to drought when primary forests are converted to secondary forests or they are harvested. Old-growth trees tend to be more resistant in some forests and crops benefit from irrigation during drought periods.
Richard Nair, Yunpeng Luo, Tarek El-Madany, Victor Rolo, Javier Pacheco-Labrador, Silvia Caldararu, Kendalynn A. Morris, Marion Schrumpf, Arnaud Carrara, Gerardo Moreno, Markus Reichstein, and Mirco Migliavacca
EGUsphere, https://doi.org/10.5194/egusphere-2023-2434, https://doi.org/10.5194/egusphere-2023-2434, 2023
Preprint archived
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We studied a Mediterranean ecosystem to understand carbon uptake efficiency and its controls. These ecosystems face potential nitrogen-phosphorus imbalances due to pollution. Analysing six years of carbon data, we assessed controls at different timeframes. This is crucial for predicting such vulnerable regions. Our findings revealed N limitation on C uptake, not N:P imbalance, and strong influence of water availability. whether drought or wetness promoted net C uptake depended on timescale.
Ivan Cornut, Nicolas Delpierre, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, Otavio Campoe, Jose Luiz Stape, Vitoria Fernanda Santos, and Guerric le Maire
Biogeosciences, 20, 3093–3117, https://doi.org/10.5194/bg-20-3093-2023, https://doi.org/10.5194/bg-20-3093-2023, 2023
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Potassium is an essential element for living organisms. Trees are dependent upon this element for certain functions that allow them to build their trunks using carbon dioxide. Using data from experiments in eucalypt plantations in Brazil and a simplified computer model of the plantations, we were able to investigate the effect that a lack of potassium can have on the production of wood. Understanding nutrient cycles is useful to understand the response of forests to environmental change.
Ivan Cornut, Guerric le Maire, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, and Nicolas Delpierre
Biogeosciences, 20, 3119–3135, https://doi.org/10.5194/bg-20-3119-2023, https://doi.org/10.5194/bg-20-3119-2023, 2023
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After simulating the effects of low levels of potassium on the canopy of trees and the uptake of carbon dioxide from the atmosphere by leaves in Part 1, here we tried to simulate the way the trees use the carbon they have acquired and the interaction with the potassium cycle in the tree. We show that the effect of low potassium on the efficiency of the trees in acquiring carbon is enough to explain why they produce less wood when they are in soils with low levels of potassium.
Theertha Kariyathan, Ana Bastos, Julia Marshall, Wouter Peters, Pieter Tans, and Markus Reichstein
Atmos. Meas. Tech., 16, 3299–3312, https://doi.org/10.5194/amt-16-3299-2023, https://doi.org/10.5194/amt-16-3299-2023, 2023
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The timing and duration of the carbon uptake period (CUP) are sensitive to the occurrence of major phenological events, which are influenced by recent climate change. This study presents an ensemble-based approach for quantifying the timing and duration of the CUP and their uncertainty when derived from atmospheric CO2 measurements with noise and gaps. The CUP metrics derived with the approach are more robust and have less uncertainty than when estimated with the conventional methods.
A. Elia, M. Pickering, M. Girardello, G. Oton, G. Ceccherini, S. Capobianco, M. Piccardo, G. Forzieri, M. Migliavacca, and A. Cescatti
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLVIII-4-W7-2023, 41–46, https://doi.org/10.5194/isprs-archives-XLVIII-4-W7-2023-41-2023, https://doi.org/10.5194/isprs-archives-XLVIII-4-W7-2023-41-2023, 2023
Hoontaek Lee, Martin Jung, Nuno Carvalhais, Tina Trautmann, Basil Kraft, Markus Reichstein, Matthias Forkel, and Sujan Koirala
Hydrol. Earth Syst. Sci., 27, 1531–1563, https://doi.org/10.5194/hess-27-1531-2023, https://doi.org/10.5194/hess-27-1531-2023, 2023
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We spatially attribute the variance in global terrestrial water storage (TWS) interannual variability (IAV) and its modeling error with two data-driven hydrological models. We find error hotspot regions that show a disproportionately large significance in the global mismatch and the association of the error regions with a smaller-scale lateral convergence of water. Our findings imply that TWS IAV modeling can be efficiently improved by focusing on model representations for the error hotspots.
Robert Vautard, Geert Jan van Oldenborgh, Rémy Bonnet, Sihan Li, Yoann Robin, Sarah Kew, Sjoukje Philip, Jean-Michel Soubeyroux, Brigitte Dubuisson, Nicolas Viovy, Markus Reichstein, Friederike Otto, and Iñaki Garcia de Cortazar-Atauri
Nat. Hazards Earth Syst. Sci., 23, 1045–1058, https://doi.org/10.5194/nhess-23-1045-2023, https://doi.org/10.5194/nhess-23-1045-2023, 2023
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A deep frost occurred in early April 2021, inducing severe damages in grapevine and fruit trees in France. We found that such extreme frosts occurring after the start of the growing season such as those of April 2021 are currently about 2°C colder [0.5 °C to 3.3 °C] in observations than in preindustrial climate. This observed intensification of growing-period frosts is attributable, at least in part, to human-caused climate change, making the 2021 event 50 % more likely [10 %–110 %].
Sinikka Jasmin Paulus, Tarek Sebastian El-Madany, René Orth, Anke Hildebrandt, Thomas Wutzler, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Olaf Kolle, Markus Reichstein, and Mirco Migliavacca
Hydrol. Earth Syst. Sci., 26, 6263–6287, https://doi.org/10.5194/hess-26-6263-2022, https://doi.org/10.5194/hess-26-6263-2022, 2022
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In this study, we analyze small inputs of water to ecosystems such as fog, dew, and adsorption of vapor. To measure them, we use a scaling system and later test our attribution of different water fluxes to weight changes. We found that they occur frequently during 1 year in a dry summer ecosystem. In each season, a different flux seems dominant, but they all mainly occur during the night. Therefore, they could be important for the biosphere because rain is unevenly distributed over the year.
Na Li, Sebastian Sippel, Alexander J. Winkler, Miguel D. Mahecha, Markus Reichstein, and Ana Bastos
Earth Syst. Dynam., 13, 1505–1533, https://doi.org/10.5194/esd-13-1505-2022, https://doi.org/10.5194/esd-13-1505-2022, 2022
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Quantifying the imprint of large-scale atmospheric circulation dynamics and associated carbon cycle responses is key to improving our understanding of carbon cycle dynamics. Using a statistical model that relies on spatiotemporal sea level pressure as a proxy for large-scale atmospheric circulation, we quantify the fraction of interannual variability in atmospheric CO2 growth rate and the land CO2 sink that are driven by atmospheric circulation variability.
Melissa Ruiz-Vásquez, Sungmin O, Alexander Brenning, Randal D. Koster, Gianpaolo Balsamo, Ulrich Weber, Gabriele Arduini, Ana Bastos, Markus Reichstein, and René Orth
Earth Syst. Dynam., 13, 1451–1471, https://doi.org/10.5194/esd-13-1451-2022, https://doi.org/10.5194/esd-13-1451-2022, 2022
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Subseasonal forecasts facilitate early warning of extreme events; however their predictability sources are not fully explored. We find that global temperature forecast errors in many regions are related to climate variables such as solar radiation and precipitation, as well as land surface variables such as soil moisture and evaporative fraction. A better representation of these variables in the forecasting and data assimilation systems can support the accuracy of temperature forecasts.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Javier de la Casa, Adrià Barbeta, Asun Rodríguez-Uña, Lisa Wingate, Jérôme Ogée, and Teresa E. Gimeno
Hydrol. Earth Syst. Sci., 26, 4125–4146, https://doi.org/10.5194/hess-26-4125-2022, https://doi.org/10.5194/hess-26-4125-2022, 2022
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Recently, studies have been reporting mismatches in the water isotopic composition of plants and soils. In this work, we reviewed worldwide isotopic composition data of field and laboratory studies to see if the mismatch is generalised, and we found it to be true. This contradicts theoretical expectations and may underlie an non-described phenomenon that should be forward investigated and implemented in ecohydrological models to avoid erroneous estimations of water sources used by vegetation.
Sophia Walther, Simon Besnard, Jacob Allen Nelson, Tarek Sebastian El-Madany, Mirco Migliavacca, Ulrich Weber, Nuno Carvalhais, Sofia Lorena Ermida, Christian Brümmer, Frederik Schrader, Anatoly Stanislavovich Prokushkin, Alexey Vasilevich Panov, and Martin Jung
Biogeosciences, 19, 2805–2840, https://doi.org/10.5194/bg-19-2805-2022, https://doi.org/10.5194/bg-19-2805-2022, 2022
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Satellite observations help interpret station measurements of local carbon, water, and energy exchange between the land surface and the atmosphere and are indispensable for simulations of the same in land surface models and their evaluation. We propose generalisable and efficient approaches to systematically ensure high quality and to estimate values in data gaps. We apply them to satellite data of surface reflectance and temperature with different resolutions at the stations.
Philip J. Ward, James Daniell, Melanie Duncan, Anna Dunne, Cédric Hananel, Stefan Hochrainer-Stigler, Annegien Tijssen, Silvia Torresan, Roxana Ciurean, Joel C. Gill, Jana Sillmann, Anaïs Couasnon, Elco Koks, Noemi Padrón-Fumero, Sharon Tatman, Marianne Tronstad Lund, Adewole Adesiyun, Jeroen C. J. H. Aerts, Alexander Alabaster, Bernard Bulder, Carlos Campillo Torres, Andrea Critto, Raúl Hernández-Martín, Marta Machado, Jaroslav Mysiak, Rene Orth, Irene Palomino Antolín, Eva-Cristina Petrescu, Markus Reichstein, Timothy Tiggeloven, Anne F. Van Loon, Hung Vuong Pham, and Marleen C. de Ruiter
Nat. Hazards Earth Syst. Sci., 22, 1487–1497, https://doi.org/10.5194/nhess-22-1487-2022, https://doi.org/10.5194/nhess-22-1487-2022, 2022
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The majority of natural-hazard risk research focuses on single hazards (a flood, a drought, a volcanic eruption, an earthquake, etc.). In the international research and policy community it is recognised that risk management could benefit from a more systemic approach. In this perspective paper, we argue for an approach that addresses multi-hazard, multi-risk management through the lens of sustainability challenges that cut across sectors, regions, and hazards.
Basil Kraft, Martin Jung, Marco Körner, Sujan Koirala, and Markus Reichstein
Hydrol. Earth Syst. Sci., 26, 1579–1614, https://doi.org/10.5194/hess-26-1579-2022, https://doi.org/10.5194/hess-26-1579-2022, 2022
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We present a physics-aware machine learning model of the global hydrological cycle. As the model uses neural networks under the hood, the simulations of the water cycle are learned from data, and yet they are informed and constrained by physical knowledge. The simulated patterns lie within the range of existing hydrological models and are plausible. The hybrid modeling approach has the potential to tackle key environmental questions from a novel perspective.
J. Pacheco-Labrador, U. Weber, X. Ma, M. D. Mahecha, N. Carvalhais, C. Wirth, A. Huth, F. J. Bohn, G. Kraemer, U. Heiden, FunDivEUROPE members, and M. Migliavacca
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLVI-1-W1-2021, 49–55, https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-49-2022, https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-49-2022, 2022
Josephin Kroll, Jasper M. C. Denissen, Mirco Migliavacca, Wantong Li, Anke Hildebrandt, and Rene Orth
Biogeosciences, 19, 477–489, https://doi.org/10.5194/bg-19-477-2022, https://doi.org/10.5194/bg-19-477-2022, 2022
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Plant growth relies on having access to energy (solar radiation) and water (soil moisture). This energy and water availability is impacted by weather extremes, like heat waves and droughts, which will occur more frequently in response to climate change. In this context, we analysed global satellite data to detect in which regions extreme plant growth is controlled by energy or water. We find that extreme plant growth is associated with temperature- or soil-moisture-related extremes.
Ana Bastos, René Orth, Markus Reichstein, Philippe Ciais, Nicolas Viovy, Sönke Zaehle, Peter Anthoni, Almut Arneth, Pierre Gentine, Emilie Joetzjer, Sebastian Lienert, Tammas Loughran, Patrick C. McGuire, Sungmin O, Julia Pongratz, and Stephen Sitch
Earth Syst. Dynam., 12, 1015–1035, https://doi.org/10.5194/esd-12-1015-2021, https://doi.org/10.5194/esd-12-1015-2021, 2021
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Temperate biomes in Europe are not prone to recurrent dry and hot conditions in summer. However, these conditions may become more frequent in the coming decades. Because stress conditions can leave legacies for many years, this may result in reduced ecosystem resilience under recurrent stress. We assess vegetation vulnerability to the hot and dry summers in 2018 and 2019 in Europe and find the important role of inter-annual legacy effects from 2018 in modulating the impacts of the 2019 event.
Alexander J. Winkler, Ranga B. Myneni, Alexis Hannart, Stephen Sitch, Vanessa Haverd, Danica Lombardozzi, Vivek K. Arora, Julia Pongratz, Julia E. M. S. Nabel, Daniel S. Goll, Etsushi Kato, Hanqin Tian, Almut Arneth, Pierre Friedlingstein, Atul K. Jain, Sönke Zaehle, and Victor Brovkin
Biogeosciences, 18, 4985–5010, https://doi.org/10.5194/bg-18-4985-2021, https://doi.org/10.5194/bg-18-4985-2021, 2021
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Satellite observations since the early 1980s show that Earth's greening trend is slowing down and that browning clusters have been emerging, especially in the last 2 decades. A collection of model simulations in conjunction with causal theory points at climatic changes as a key driver of vegetation changes in natural ecosystems. Most models underestimate the observed vegetation browning, especially in tropical rainforests, which could be due to an excessive CO2 fertilization effect in models.
Xin Huang, Dan Lu, Daniel M. Ricciuto, Paul J. Hanson, Andrew D. Richardson, Xuehe Lu, Ensheng Weng, Sheng Nie, Lifen Jiang, Enqing Hou, Igor F. Steinmacher, and Yiqi Luo
Geosci. Model Dev., 14, 5217–5238, https://doi.org/10.5194/gmd-14-5217-2021, https://doi.org/10.5194/gmd-14-5217-2021, 2021
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In the data-rich era, data assimilation is widely used to integrate abundant observations into models to reduce uncertainty in ecological forecasting. However, applications of data assimilation are restricted by highly technical requirements. To alleviate this technical burden, we developed a model-independent data assimilation (MIDA) module which is friendly to ecologists with limited programming skills. MIDA also supports a flexible switch of different models or observations in DA analysis.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
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Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
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Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
Kamel Soudani, Nicolas Delpierre, Daniel Berveiller, Gabriel Hmimina, Jean-Yves Pontailler, Lou Seureau, Gaëlle Vincent, and Éric Dufrêne
Biogeosciences, 18, 3391–3408, https://doi.org/10.5194/bg-18-3391-2021, https://doi.org/10.5194/bg-18-3391-2021, 2021
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We present an exhaustive comparative survey of eight proximal methods to estimate forest phenology. We focused on methodological aspects and thoroughly assessed deviations between predicted and observed phenological dates and pointed out their main causes. We show that proximal methods provide robust phenological metrics. They can be used to retrieve long-term phenological series at flux measurement sites and help interpret the interannual variability and trends of mass and energy exchanges.
Sam P. Jones, Aurore Kaisermann, Jérôme Ogée, Steven Wohl, Alexander W. Cheesman, Lucas A. Cernusak, and Lisa Wingate
SOIL, 7, 145–159, https://doi.org/10.5194/soil-7-145-2021, https://doi.org/10.5194/soil-7-145-2021, 2021
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Understanding how the rate of oxygen isotope exchange between water and CO2 varies in soils is key for using the oxygen isotope composition of atmospheric CO2 as a tracer of biosphere CO2 fluxes at large scales. Across 44 diverse soils the rate of this exchange responded to pH, nitrate and microbial biomass, which are hypothesised to alter activity of the enzyme carbonic anhydrase in soils. Using these three soil traits, it is now possible to predict how this isotopic exchange varies spatially.
Christopher Krich, Mirco Migliavacca, Diego G. Miralles, Guido Kraemer, Tarek S. El-Madany, Markus Reichstein, Jakob Runge, and Miguel D. Mahecha
Biogeosciences, 18, 2379–2404, https://doi.org/10.5194/bg-18-2379-2021, https://doi.org/10.5194/bg-18-2379-2021, 2021
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Ecosystems and the atmosphere interact with each other. These interactions determine e.g. the water and carbon fluxes and thus are crucial to understand climate change effects. We analysed the interactions for many ecosystems across the globe, showing that very different ecosystems can have similar interactions with the atmosphere. Meteorological conditions seem to be the strongest interaction-shaping factor. This means that common principles can be identified to describe ecosystem behaviour.
Milan Flach, Alexander Brenning, Fabian Gans, Markus Reichstein, Sebastian Sippel, and Miguel D. Mahecha
Biogeosciences, 18, 39–53, https://doi.org/10.5194/bg-18-39-2021, https://doi.org/10.5194/bg-18-39-2021, 2021
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Drought and heat events affect the uptake and sequestration of carbon in terrestrial ecosystems. We study the impact of droughts and heatwaves on the uptake of CO2 of different vegetation types at the global scale. We find that agricultural areas are generally strongly affected. Forests instead are not particularly sensitive to the events under scrutiny. This implies different water management strategies of forests but also a lack of sensitivity to remote-sensing-derived vegetation activity.
Naixin Fan, Sujan Koirala, Markus Reichstein, Martin Thurner, Valerio Avitabile, Maurizio Santoro, Bernhard Ahrens, Ulrich Weber, and Nuno Carvalhais
Earth Syst. Sci. Data, 12, 2517–2536, https://doi.org/10.5194/essd-12-2517-2020, https://doi.org/10.5194/essd-12-2517-2020, 2020
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The turnover time of terrestrial carbon (τ) controls the global carbon cycle–climate feedback. In this study, we provide a new, updated ensemble of diagnostic terrestrial carbon turnover times and associated uncertainties on a global scale. Despite the large variation in both magnitude and spatial patterns of τ, we identified robust features in the spatial patterns of τ which could contribute to uncertainty reductions in future projections of the carbon cycle–climate feedback.
Rui Cheng, Troy S. Magney, Debsunder Dutta, David R. Bowling, Barry A. Logan, Sean P. Burns, Peter D. Blanken, Katja Grossmann, Sophia Lopez, Andrew D. Richardson, Jochen Stutz, and Christian Frankenberg
Biogeosciences, 17, 4523–4544, https://doi.org/10.5194/bg-17-4523-2020, https://doi.org/10.5194/bg-17-4523-2020, 2020
Short summary
Short summary
We measured reflected sunlight from an evergreen canopy for a year to detect changes in pigments that play an important role in regulating the seasonality of photosynthesis. Results show a strong mechanistic link between spectral reflectance features and pigment content, which is validated using a biophysical model. Our results show spectrally where, why, and when spectral features change over the course of the season and show promise for estimating photosynthesis remotely.
Cited articles
Adole, T., Dash, J., Rodriguez-Galiano, V., and Atkinson, P. M.: Photoperiod controls vegetation phenology across Africa, Commun. Biol., 2, 391, https://doi.org/10.1038/s42003-019-0636-7, 2019.
Alduchov, O. A. and Eskridge, R. E.: Improved magnus form approximation of saturation vapor pressure, J. Appl. Meteorol., 35, 601–609, https://doi.org/10.2172/548871, 1997.
Asse, D., Randin, C. F., Bonhomme, M., Delestrade, A., and Chuine, I.: Process-based models outcompete correlative models in projecting spring phenology of trees in a future warmer climate, Agr. Forest Meteorol., 285–286, 107931, https://doi.org/10.1016/j.agrformet.2020.107931, 2020.
Bahdanau, D., Cho, K., and Bengio, Y.: Neural Machine Translation by Jointly Learning to Align and Translate, in: International Conference on Learning Representations, San Diego, USA, 7–9 May 2015, https://doi.org/10.48550/arXiv.1409.0473, 2015.
Besnard, S., Carvalhais, N., Arain, M. A., Black, A., Brede, B., Buchmann, N., Chen, J., Clevers, J. G. P. W., Dutrieux, L. P., Gans, F., Herold, M., Jung, M., Kosugi, Y., Knohl, A., Law, B. E., Paul-Limoges, E., Lohila, A., Merbold, L., Roupsard, O., Valentini, R., Wolf, S., Zhang, X., and Reichstein, M.: Memory effects of climate and vegetation affecting net ecosystem CO2 fluxes in global forests, PLOS ONE, 14, e0211510, https://doi.org/10.1371/journal.pone.0211510, 2019.
Borchert, R., Robertson, K., Schwartz, M. D., and Williams-Linera, G.: Phenology of temperate trees in tropical climates, Int. J. Biometeorol., 50, 57–65, https://doi.org/10.1007/s00484-005-0261-7, 2005.
Buermann, W., Forkel, M., O'Sullivan, M., Sitch, S., Friedlingstein, P., Haverd, V., Jain, A. K., Kato, E., Kautz, M., Lienert, S., Lombardozzi, D., Nabel, J. E. M. S., Tian, H., Wiltshire, A. J., Zhu, D., Smith, W. K., and Richardson, A. D.: Widespread seasonal compensation effects of spring warming on northern plant productivity, Nature, 562, 110–114, https://doi.org/10.1038/s41586-018-0555-7, 2018.
Callaghan, M., Schleussner, C.-F., Nath, S., Lejeune, Q., Knutson, T. R., Reichstein, M., Hansen, G., Theokritoff, E., Andrijevic, M., Brecha, R. J., Hegarty, M., Jones, C., Lee, K., Lucas, A., van Maanen, N., Menke, I., Pfleiderer, P., Yesil, B., and Minx, J. C.: Machine-learning-based evidence and attribution mapping of 100,000 climate impact studies, Nat. Clim. Change, 11, 966–972, https://doi.org/10.1038/s41558-021-01168-6, 2021.
Chen, X. and Xu, L.: Temperature controls on the spatial pattern of tree phenology in China's temperate zone, Agr. Forest Meteorol., 154–155, 195–202, https://doi.org/10.1016/j.agrformet.2011.11.006, 2012.
Chen, Z., Liu, H., Xu, C., Wu, X., Liang, B., Cao, J., and Chen, D.: Modeling vegetation greenness and its climate sensitivity with deep-learning technology, Ecol. Evol., 11, 7335–7345, https://doi.org/10.1002/ece3.7564, 2021.
Chuine, I.: A Unified Model for Budburst of Trees, J. Theor. Biol., 207, 337–347, https://doi.org/10.1006/jtbi.2000.2178, 2000.
Chuine, I., Morin, X., and Bugmann, H.: Warming, Photoperiods, and Tree Phenology, Science, 329, 277–278, https://doi.org/10.1126/science.329.5989.277-e, 2010.
Chuine, I., Bonhomme, M., Legave, J.-M., García de Cortázar-Atauri, I., Charrier, G., Lacointe, A., and Améglio, T.: Can phenological models predict tree phenology accurately in the future? The unrevealed hurdle of endodormancy break, Glob. Change Biol., 22, 3444–3460, https://doi.org/10.1111/gcb.13383, 2016.
Cleland, E. E., Chuine, I., Menzel, A., Mooney, H. A., and Schwartz, M. D.: Shifting plant phenology in response to global change, Trends Ecol. Evol., 22, 357–365, https://doi.org/10.1016/j.tree.2007.04.003, 2007.
Cleveland, W. S.: Robust Locally Weighted Regression and Smoothing Scatterplots, J. Am. Stat. Assoc., 74, 829–836, https://doi.org/10.1080/01621459.1979.10481038, 1979.
Delpierre, N., Dufrêne, E., Soudani, K., Ulrich, E., Cecchini, S., Boé, J., and François, C.: Modelling interannual and spatial variability of leaf senescence for three deciduous tree species in France, Agr. Forest Meteorol., 149, 938–948, https://doi.org/10.1016/j.agrformet.2008.11.014, 2009.
Denéchère, R., Delpierre, N., Apostol, E. N., Berveiller, D., Bonne, F., Cole, E., Delzon, S., Dufrêne, E., Gressler, E., Jean, F., Lebourgeois, F., Liu, G., Louvet, J.-M., Parmentier, J., Soudani, K., and Vincent, G.: The within-population variability of leaf spring and autumn phenology is influenced by temperature in temperate deciduous trees, Int. J. Biometeorol., 65, 369–379, https://doi.org/10.1007/s00484-019-01762-6, 2021.
Ding, Y., Li, Z., and Peng, S.: Global analysis of time-lag and -accumulation effects of climate on vegetation growth, Int. J. Appl. Earth Obs., 92, 102179, https://doi.org/10.1016/j.jag.2020.102179, 2020.
ElGhawi, R., Kraft, B., Reimers, C., Reichstein, M., Körner, M., Gentine, P., and Winkler, A. J.: Hybrid modeling of evapotranspiration: inferring stomatal and aerodynamic resistances using combined physics-based and machine learning, Environ. Res. Lett., 18, 034039, https://doi.org/10.1088/1748-9326/acbbe0, 2023.
Ettinger, A. K., Gee, S., and Wolkovich, E. M.: Phenological sequences: how early-season events define those that follow, Am. J. Bot., 105, 1771–1780, https://doi.org/10.1002/ajb2.1174, 2018.
Ettinger, A. K., Chamberlain, C. J., Morales-Castilla, I., Buonaiuto, D. M., Flynn, D. F. B., Savas, T., Samaha, J. A., and Wolkovich, E. M.: Winter temperatures predominate in spring phenological responses to warming, Nat. Clim. Change, 10, 1137–1142, https://doi.org/10.1038/s41558-020-00917-3, 2020.
Flynn, D. F. B. and Wolkovich, E. M.: Temperature and photoperiod drive spring phenology across all species in a temperate forest community, New Phytol., 219, 1353–1362, https://doi.org/10.1111/nph.15232, 2018.
Forkel, M., Dorigo, W., Lasslop, G., Teubner, I., Chuvieco, E., and Thonicke, K.: A data-driven approach to identify controls on global fire activity from satellite and climate observations (SOFIA V1), Geosci. Model Dev., 10, 4443–4476, https://doi.org/10.5194/gmd-10-4443-2017, 2017.
Fu, Y., Li, X., Zhou, X., Geng, X., Guo, Y., and Zhang, Y.: Progress in plant phenology modeling under global climate change, Sci. China Earth Sci., 63, 1237–1247, https://doi.org/10.1007/s11430-019-9622-2, 2020.
Fu, Y. H., Zhao, H., Piao, S., Peaucelle, M., Peng, S., Zhou, G., Ciais, P., Huang, M., Menzel, A., Peñuelas, J., Song, Y., Vitasse, Y., Zeng, Z., and Janssens, I. A.: Declining global warming effects on the phenology of spring leaf unfolding, Nature, 526, 104–107, https://doi.org/10.1038/nature15402, 2015.
Fu, Y. S. H., Campioli, M., Vitasse, Y., De Boeck, H. J., Van den Berge, J., AbdElgawad, H., Asard, H., Piao, S., Deckmyn, G., and Janssens, I. A.: Variation in leaf flushing date influences autumnal senescence and next year's flushing date in two temperate tree species, P. Natl. Acad. Sci. USA, 111, 7355–7360, https://doi.org/10.1073/pnas.1321727111, 2014.
Gömöry, D., Foffová, E., Longauer, R., and Krajmerová, D.: Memory effects associated with early-growth environment in Norway spruce and European larch, Eur. J. Forest Res., 134, 89–97, https://doi.org/10.1007/s10342-014-0835-1, 2015.
Hall, C. A. and Meyer, W. W.: Optimal error bounds for cubic spline interpolation, J. Approx. Theory, 16, 105–122, https://doi.org/10.1016/0021-9045(76)90040-X, 1976.
Hänninen, H.: Modelling bud dormancy release in trees from cool and temperate regions, Acta forestalia Fennica, Society of Forestry in Finland, 1–47, https://helda.helsinki.fi/handle/1975/9315 (last access: 3 September 2024), 1990.
Hochreiter, S. and Schmidhuber, J.: Long Short-Term Memory, Neural Comput., 9, 1735–1780, https://doi.org/10.1162/neco.1997.9.8.1735, 1997.
Hornik, K., Stinchcombe, M., and White, H.: Multilayer feedforward networks are universal approximators, Neural Networks, 2, 359–366, https://doi.org/10.1016/0893-6080(89)90020-8, 1989.
Jeong, S.: Autumn greening in a warming climate, Nat. Clim. Change, 10, 712–713, https://doi.org/10.1038/s41558-020-0852-7, 2020.
Jeong, S.-J., Medvigy, D., Shevliakova, E., and Malyshev, S.: Uncertainties in terrestrial carbon budgets related to spring phenology, J. Geophys. Res.-Biogeo., 117, G01030, https://doi.org/10.1029/2011JG001868, 2012.
Jin, J., Wang, Y., Zhang, Z., Magliulo, V., Jiang, H., and Cheng, M.: Phenology Plays an Important Role in the Regulation of Terrestrial Ecosystem Water-Use Efficiency in the Northern Hemisphere, Remote Sensing, 9, 664, https://doi.org/10.3390/rs9070664, 2017.
Jolly, W. M., Nemani, R., and Running, S. W.: A generalized, bioclimatic index to predict foliar phenology in response to climate, Glob. Change Biol., 11, 619–632, https://doi.org/10.1111/j.1365-2486.2005.00930.x, 2005.
Joshi, R. C., Sheridan, G. J., Ryu, D., and Lane, P. N. J.: How long is the memory of forest growth to rainfall in asynchronous climates?, Ecol. Indic., 140, 109057, https://doi.org/10.1016/j.ecolind.2022.109057, 2022.
Kingma, D. P. and Ba, J.: Adam: A Method for Stochastic Optimization, in: International Conference on Learning Representations, San Diego, USA, 7–9 May 2015, https://doi.org/10.48550/arXiv.1412.6980, 2015.
Koebsch, F., Sonnentag, O., Järveoja, J., Peltoniemi, M., Alekseychik, P., Aurela, M., Arslan, A. N., Dinsmore, K., Gianelle, D., Helfter, C., Jackowicz-Korczynski, M., Korrensalo, A., Leith, F., Linkosalmi, M., Lohila, A., Lund, M., Maddison, M., Mammarella, I., Mander, Ü., Minkkinen, K., Pickard, A., Pullens, J. W. M., Tuittila, E.-S., Nilsson, M. B., and Peichl, M.: Refining the role of phenology in regulating gross ecosystem productivity across European peatlands, Glob. Change Biol., 26, 876–887, https://doi.org/10.1111/gcb.14905, 2020.
Kraft, B., Jung, M., Körner, M., Requena Mesa, C., Cortés, J., and Reichstein, M.: Identifying Dynamic Memory Effects on Vegetation State Using Recurrent Neural Networks, Frontiers in Big Data, 2, 1–14, https://doi.org/10.3389/fdata.2019.00031, 2019.
Kraft, B., Jung, M., Körner, M., Koirala, S., and Reichstein, M.: Towards hybrid modeling of the global hydrological cycle, Hydrol. Earth Syst. Sci., 26, 1579–1614, https://doi.org/10.5194/hess-26-1579-2022, 2022.
Krinner, G., Viovy, N., de Noblet-Ducoudré, N., Ogée, J., Polcher, J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice, I. C.: A dynamic global vegetation model for studies of the coupled atmosphere-biosphere system, Global Biogeochem. Cy., 19, GB1015, https://doi.org/10.1029/2003GB002199, 2005.
Lawrence, D. M., Fisher, R. A., Koven, C. D., Oleson, K. W., Swenson, S. C., Bonan, G., Collier, N., Ghimire, B., van Kampenhout, L., Kennedy, D., Kluzek, E., Lawrence, P. J., Li, F., Li, H., Lombardozzi, D., Riley, W. J., Sacks, W. J., Shi, M., Vertenstein, M., Wieder, W. R., Xu, C., Ali, A. A., Badger, A. M., Bisht, G., van den Broeke, M., Brunke, M. A., Burns, S. P., Buzan, J., Clark, M., Craig, A., Dahlin, K., Drewniak, B., Fisher, J. B., Flanner, M., Fox, A. M., Gentine, P., Hoffman, F., Keppel-Aleks, G., Knox, R., Kumar, S., Lenaerts, J., Leung, L. R., Lipscomb, W. H., Lu, Y., Pandey, A., Pelletier, J. D., Perket, J., Randerson, J. T., Ricciuto, D. M., Sanderson, B. M., Slater, A., Subin, Z. M., Tang, J., Thomas, R. Q., Val Martin, M., and Zeng, X.: The Community Land Model Version 5: Description of New Features, Benchmarking, and Impact of Forcing Uncertainty, J. Adv. Model. Earth Sy., 11, 4245–4287, https://doi.org/10.1029/2018MS001583, 2019.
Lian, X., Piao, S., Chen, A., Wang, K., Li, X., Buermann, W., Huntingford, C., Peñuelas, J., Xu, H., and Myneni, R. B.: Seasonal biological carryover dominates northern vegetation growth, Nat. Commun., 12, 983, https://doi.org/10.1038/s41467-021-21223-2, 2021.
Liu, G., Chen, X., Zhang, Q., Lang, W., and Delpierre, N.: Antagonistic effects of growing season and autumn temperatures on the timing of leaf coloration in winter deciduous trees, Glob. Change Biol., 24, 3537–3545, https://doi.org/10.1111/gcb.14095, 2018.
Liu, G., Chen, X., Fu, Y., and Delpierre, N.: Modelling leaf coloration dates over temperate China by considering effects of leafy season climate, Ecol. Model., 394, 34–43, https://doi.org/10.1016/j.ecolmodel.2018.12.020, 2019.
Liu, G., Migliavacca, M., Reimers, C., Kraft, B., Reichstein, M., Richardson, A. D., Wingate, L., Delpierre, N., Yang, H., and Winkler, A. J.: Deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology, Zenodo [code], https://doi.org/10.5281/zenodo.10790295, 2024.
Liu, L., Zhang, Y., Wu, S., Li, S., and Qin, D.: Water memory effects and their impacts on global vegetation productivity and resilience, Sci. Rep., 8, 2962, https://doi.org/10.1038/s41598-018-21339-4, 2018.
Loshchilov, I. and Hutter, F.: Decoupled Weight Decay Regularization, International Conference on Learning Representations, New Orleans, USA, 6–9 May 2019, https://doi.org/10.48550/arXiv.1711.05101, 2019.
Luo, Y., El-Madany, T., Ma, X., Nair, R., Jung, M., Weber, U., Filippa, G., Bucher, S. F., Moreno, G., Cremonese, E., Carrara, A., Gonzalez-Cascon, R., Cáceres Escudero, Y., Galvagno, M., Pacheco-Labrador, J., Martín, M. P., Perez-Priego, O., Reichstein, M., Richardson, A. D., Menzel, A., Römermann, C., and Migliavacca, M.: Nutrients and water availability constrain the seasonality of vegetation activity in a Mediterranean ecosystem, Glob. Change Biol., 26, 4379–4400, https://doi.org/10.1111/gcb.15138, 2020.
Mauritsen, T., Bader, J., Becker, T., Behrens, J., Bittner, M., Brokopf, R., Brovkin, V., Claussen, M., Crueger, T., Esch, M., Fast, I., Fiedler, S., Fläschner, D., Gayler, V., Giorgetta, M., Goll, D. S., Haak, H., Hagemann, S., Hedemann, C., Hohenegger, C., Ilyina, T., Jahns, T., Jimenéz-de-la-Cuesta, D., Jungclaus, J., Kleinen, T., Kloster, S., Kracher, D., Kinne, S., Kleberg, D., Lasslop, G., Kornblueh, L., Marotzke, J., Matei, D., Meraner, K., Mikolajewicz, U., Modali, K., Möbis, B., Müller, W. A., Nabel, J. E. M. S., Nam, C. C. W., Notz, D., Nyawira, S.-S., Paulsen, H., Peters, K., Pincus, R., Pohlmann, H., Pongratz, J., Popp, M., Raddatz, T. J., Rast, S., Redler, R., Reick, C. H., Rohrschneider, T., Schemann, V., Schmidt, H., Schnur, R., Schulzweida, U., Six, K. D., Stein, L., Stemmler, I., Stevens, B., von Storch, J.-S., Tian, F., Voigt, A., Vrese, P., Wieners, K.-H., Wilkenskjeld, S., Winkler, A., and Roeckner, E.: Developments in the MPI-M Earth System Model version 1.2 (MPI-ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Sy., 11, 998–1038, https://doi.org/10.1029/2018MS001400, 2019.
Menzel, A., Sparks, T. H., Estrella, N., Koch, E., Aasa, A., Ahas, R., Alm-Kübler, K., Bissolli, P., Braslavská, O., Briede, A., Chmielewski, F. M., Crepinsek, Z., Curnel, Y., Dahl, Å., Defila, C., Donnelly, A., Filella, Y., Jatczak, K., Måge, F., Mestre, A., Nordli, Ø., Peñuelas, J., Pirinen, P., Remišová, V., Scheifinger, H., Striz, M., Susnik, A., Van Vliet, A. J. H., Wielgolaski, F.-E., Zach, S., and Zust, A.: European phenological response to climate change matches the warming pattern, Glob. Change Biol., 12, 1969–1976, https://doi.org/10.1111/j.1365-2486.2006.01193.x, 2006.
Menzel, A., Seifert, H., and Estrella, N.: Effects of recent warm and cold spells on European plant phenology, Int. J. Biometeorol., 55, 921–932, https://doi.org/10.1007/s00484-011-0466-x, 2011.
Migliavacca, M., Reichstein, M., Richardson, A. D., Colombo, R., Sutton, M. A., Lasslop, G., Tomelleri, E., Wohlfahrt, G., Carvalhais, N., Cescatti, A., Mahecha, M. D., Montagnani, L., Papale, D., Zaehle, S., Arain, A., Arneth, A., Black, T. A., Carrara, A., Dore, S., Gianelle, D., Helfter, C., Hollinger, D., Kutsch, W. L., Lafleur, P. M., Nouvellon, Y., Rebmann, C., Da ROCHA, H. R., Rodeghiero, M., Roupsard, O., Sebastià, M.-T., Seufert, G., Soussana, J.-F., and Van Der MOLEN, M. K.: Semiempirical modeling of abiotic and biotic factors controlling ecosystem respiration across eddy covariance sites, Glob. Change Biol., 17, 390–409, https://doi.org/10.1111/j.1365-2486.2010.02243.x, 2011.
Migliavacca, M., Sonnentag, O., Keenan, T. F., Cescatti, A., O'Keefe, J., and Richardson, A. D.: On the uncertainty of phenological responses to climate change, and implications for a terrestrial biosphere model, Biogeosciences, 9, 2063–2083, https://doi.org/10.5194/bg-9-2063-2012, 2012.
Migliavacca, M., Reichstein, M., Richardson, A. D., Mahecha, M. D., Cremonese, E., Delpierre, N., Galvagno, M., Law, B. E., Wohlfahrt, G., Andrew Black, T., Carvalhais, N., Ceccherini, G., Chen, J., Gobron, N., Koffi, E., William Munger, J., Perez-Priego, O., Robustelli, M., Tomelleri, E., and Cescatti, A.: Influence of physiological phenology on the seasonal pattern of ecosystem respiration in deciduous forests, Glob. Change Biol., 21, 363–376, https://doi.org/10.1111/gcb.12671, 2015.
Murray-Tortarolo, G., Anav, A., Friedlingstein, P., Sitch, S., Piao, S., Zhu, Z., Poulter, B., Zaehle, S., Ahlström, A., Lomas, M., Levis, S., Viovy, N., and Zeng, N.: Evaluation of Land Surface Models in Reproducing Satellite-Derived LAI over the High-Latitude Northern Hemisphere. Part I: Uncoupled DGVMs, Remote Sensing, 5, 4819–4838, https://doi.org/10.3390/rs5104819, 2013.
Ogle, K., Barber, J. J., Barron-Gafford, G. A., Bentley, L. P., Young, J. M., Huxman, T. E., Loik, M. E., and Tissue, D. T.: Quantifying ecological memory in plant and ecosystem processes, Ecol. Lett., 18, 221–235, https://doi.org/10.1111/ele.12399, 2015.
Peano, D., Hemming, D., Materia, S., Delire, C., Fan, Y., Joetzjer, E., Lee, H., Nabel, J. E. M. S., Park, T., Peylin, P., Wårlind, D., Wiltshire, A., and Zaehle, S.: Plant phenology evaluation of CRESCENDO land surface models – Part 1: Start and end of the growing season, Biogeosciences, 18, 2405–2428, https://doi.org/10.5194/bg-18-2405-2021, 2021.
Peng, J., Wu, C., Zhang, X., Wang, X., and Gonsamo, A.: Satellite detection of cumulative and lagged effects of drought on autumn leaf senescence over the Northern Hemisphere, Glob. Change Biol., 25, 2174–2188, https://doi.org/10.1111/gcb.14627, 2019.
Peñuelas, J., Rutishauser, T., and Filella, I.: Phenology Feedbacks on Climate Change, Science, 324, 887–888, https://doi.org/10.1126/science.1173004, 2009.
Piao, S., Liu, Q., Chen, A., Janssens, I. A., Fu, Y., Dai, J., Liu, L., Lian, X., Shen, M., and Zhu, X.: Plant phenology and global climate change: Current progresses and challenges, Glob. Change Biol., 25, 1922–1940, https://doi.org/10.1111/gcb.14619, 2019.
Pollard, C. P., Griffin, C. T., Andrade Moral, R. de, Duffy, C., Chuche, J., Gaffney, M. T., Fealy, R. M., and Fealy, R.: phenModel: A temperature-dependent phenology/voltinism model for a herbivorous insect incorporating facultative diapause and budburst, Ecol. Model., 416, 108910, https://doi.org/10.1016/j.ecolmodel.2019.108910, 2020.
Puma, M. J., Koster, R. D., and Cook, B. I.: Phenological versus meteorological controls on land-atmosphere water and carbon fluxes, J. Geophys. Res.-Biogeo., 118, 14–29, https://doi.org/10.1029/2012JG002088, 2013.
Reichstein, M., Camps-Valls, G., Stevens, B., Jung, M., Denzler, J., Carvalhais, N., and Prabhat: Deep learning and process understanding for data-driven Earth system science, Nature, 566, 195–204, https://doi.org/10.1038/s41586-019-0912-1, 2019.
Ren, P., Liang, E., Raymond, P., and Rossi, S.: Bud break in sugar maple submitted to changing conditions simulating a northward migration, Can. J. For. Res., 51, 842–847, https://doi.org/10.1139/cjfr-2020-0365, 2021.
Richardson, A. D., Hollinger, D. Y., Dail, D. B., Lee, J. T., Munger, J. W., and O'keefe, J.: Influence of spring phenology on seasonal and annual carbon balance in two contrasting New England forests, Tree Physiol, 29, 321–331, https://doi.org/10.1093/treephys/tpn040, 2009.
Richardson, A. D., Andy Black, T., Ciais, P., Delbart, N., Friedl, M. A., Gobron, N., Hollinger, D. Y., Kutsch, W. L., Longdoz, B., Luyssaert, S., Migliavacca, M., Montagnani, L., William Munger, J., Moors, E., Piao, S., Rebmann, C., Reichstein, M., Saigusa, N., Tomelleri, E., Vargas, R., and Varlagin, A.: Influence of spring and autumn phenological transitions on forest ecosystem productivity, Philos. T. R. Soc. B, 365, 3227–3246, https://doi.org/10.1098/rstb.2010.0102, 2010.
Richardson, A. D., Anderson, R. S., Arain, M. A., Barr, A. G., Bohrer, G., Chen, G., Chen, J. M., Ciais, P., Davis, K. J., Desai, A. R., Dietze, M. C., Dragoni, D., Garrity, S. R., Gough, C. M., Grant, R., Hollinger, D. Y., Margolis, H. A., McCaughey, H., Migliavacca, M., Monson, R. K., Munger, J. W., Poulter, B., Raczka, B. M., Ricciuto, D. M., Sahoo, A. K., Schaefer, K., Tian, H., Vargas, R., Verbeeck, H., Xiao, J., and Xue, Y.: Terrestrial biosphere models need better representation of vegetation phenology: results from the North American Carbon Program Site Synthesis, Glob. Change Biol., 18, 566–584, https://doi.org/10.1111/j.1365-2486.2011.02562.x, 2012.
Richardson, A. D., Keenan, T. F., Migliavacca, M., Ryu, Y., Sonnentag, O., and Toomey, M.: Climate change, phenology, and phenological control of vegetation feedbacks to the climate system, Agr. Forest Meteorol., 169, 156–173, https://doi.org/10.1016/j.agrformet.2012.09.012, 2013.
Richardson, A. D., Hufkens, K., Milliman, T., Aubrecht, D. M., Chen, M., Gray, J. M., Johnston, M. R., Keenan, T. F., Klosterman, S. T., Kosmala, M., Melaas, E. K., Friedl, M. A., and Frolking, S.: Tracking vegetation phenology across diverse North American biomes using PhenoCam imagery, Sci. Data, 5, 180028, https://doi.org/10.1038/sdata.2018.28, 2018.
Seyednasrollah, B., Young, A. M., Hufkens, K., Milliman, T., Friedl, M. A., Frolking, S., and Richardson, A. D.: Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset, Sci. Data, 6, 222, https://doi.org/10.1038/s41597-019-0229-9, 2019.
Sparks, T. H. and Carey, P. D.: The Responses of Species to Climate Over Two Centuries: An Analysis of the Marsham Phenological Record, 1736–1947, J. Ecol., 83, 321–329, https://doi.org/10.2307/2261570, 1995.
Sutskever, I., Vinyals, O., and Le, Q. V.: Sequence to Sequence Learning with Neural Networks, arXiv, https://doi.org/10.48550/arXiv.1409.3215, 2014.
Thornton, P. E. and Rosenbloom, N. A.: Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model, Ecol. Model., 189, 25–48, https://doi.org/10.1016/j.ecolmodel.2005.04.008, 2005.
Thornton, P. E., Law, B. E., Gholz, H. L., Clark, K. L., Falge, E., Ellsworth, D. S., Goldstein, A. H., Monson, R. K., Hollinger, D., Falk, M., Chen, J., and Sparks, J. P.: Modeling and measuring the effects of disturbance history and climate on carbon and water budgets in evergreen needleleaf forests, Agr. Forest Meteorol., 113, 185–222, https://doi.org/10.1016/S0168-1923(02)00108-9, 2002.
Walter, J., Nagy, L., Hein, R., Rascher, U., Beierkuhnlein, C., Willner, E., and Jentsch, A.: Do plants remember drought? Hints towards a drought-memory in grasses, Environ. Exp. Bot., 71, 34–40, https://doi.org/10.1016/j.envexpbot.2010.10.020, 2011.
White, M. A., Thornton, P. E., and Running, S. W.: A continental phenology model for monitoring vegetation responses to interannual climatic variability, Global Biogeochem. Cy., 11, 217–234, https://doi.org/10.1029/97GB00330, 1997.
Wingate, L., Ogée, J., Cremonese, E., Filippa, G., Mizunuma, T., Migliavacca, M., Moisy, C., Wilkinson, M., Moureaux, C., Wohlfahrt, G., Hammerle, A., Hörtnagl, L., Gimeno, C., Porcar-Castell, A., Galvagno, M., Nakaji, T., Morison, J., Kolle, O., Knohl, A., Kutsch, W., Kolari, P., Nikinmaa, E., Ibrom, A., Gielen, B., Eugster, W., Balzarolo, M., Papale, D., Klumpp, K., Köstner, B., Grünwald, T., Joffre, R., Ourcival, J.-M., Hellstrom, M., Lindroth, A., George, C., Longdoz, B., Genty, B., Levula, J., Heinesch, B., Sprintsin, M., Yakir, D., Manise, T., Guyon, D., Ahrends, H., Plaza-Aguilar, A., Guan, J. H., and Grace, J.: Interpreting canopy development and physiology using a European phenology camera network at flux sites, Biogeosciences, 12, 5995–6015, https://doi.org/10.5194/bg-12-5995-2015, 2015.
Wolkovich, E. M., Cook, B. I., Allen, J. M., Crimmins, T. M., Betancourt, J. L., Travers, S. E., Pau, S., Regetz, J., Davies, T. J., Kraft, N. J. B., Ault, T. R., Bolmgren, K., Mazer, S. J., McCabe, G. J., McGill, B. J., Parmesan, C., Salamin, N., Schwartz, M. D., and Cleland, E. E.: Warming experiments underpredict plant phenological responses to climate change, Nature, 485, 494–497, https://doi.org/10.1038/nature11014, 2012.
Wu, C.-Y., Ahmed, A., Beutel, A., Smola, A. J., and Jing, H.: Recurrent Recommender Networks, in: Proceedings of the Tenth ACM International Conference on Web Search and Data Mining, Combridge, United Kingdom, 6–10 February 2017, 495–503, https://doi.org/10.1145/3018661.3018689, 2017.
Wu, J., Wang, D., Li, L. Z. X., and Zeng, Z.: Hydrological feedback from projected Earth greening in the 21st century, Sustainable Horizons, 1, 100007, https://doi.org/10.1016/j.horiz.2022.100007, 2022.
Zhang, H., Chuine, I., Regnier, P., Ciais, P., and Yuan, W.: Deciphering the multiple effects of climate warming on the temporal shift of leaf unfolding, Nat. Clim. Change, 12, 193–199, https://doi.org/10.1038/s41558-021-01261-w, 2022.
Zhou, R., Liu, Y., Cui, M., Lu, J., Shi, H., Ren, H., Zhang, W., and Wen, Z.: Global Assessment of Cumulative and Time-Lag Effects of Drought on Land Surface Phenology, GIScience Remote Sens., 59, 1918–1937, https://doi.org/10.1080/15481603.2022.2143661, 2022.
Zhou, X., Xin, Q., Dai, Y., and Li, W.: A deep-learning-based experiment for benchmarking the performance of global terrestrial vegetation phenology models, Global Ecol. Biogeogr., 30, 2178–2199, https://doi.org/10.1111/geb.13374, 2021.
Short summary
Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Our study employs long short-term memory (LSTM) networks to model canopy greenness and...
