Articles | Volume 16, issue 18
https://doi.org/10.5194/gmd-16-5339-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-16-5339-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
19 Sep 2023
Development and technical paper |
| 19 Sep 2023
| 19 Sep 2023
A comparison of Eulerian and Lagrangian methods for vertical particle transport in the water column
SINTEF Ocean AS, Trondheim, Norway
Department of Physics, Norwegian University of Science and Technology, Trondheim, Norway
Ruben Kristiansen
Department of Physics, Norwegian University of Science and Technology, Trondheim, Norway
Raymond Nepstad
SINTEF Ocean AS, Trondheim, Norway
Erik van Sebille
Institute for Marine and Atmospheric Research, Utrecht University, Utrecht, the Netherlands
Andy M. Booth
SINTEF Ocean AS, Trondheim, Norway
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Tor Nordam and Rodrigo Duran
Geosci. Model Dev., 13, 5935–5957, https://doi.org/10.5194/gmd-13-5935-2020, https://doi.org/10.5194/gmd-13-5935-2020, 2020
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In applied oceanography, a common task is to calculate the trajectory of objects floating at the sea surface or submerged in the water. We have investigated different numerical methods for doing such calculations and discuss the benefits and challenges of some common methods. We then propose a small change to some common methods that make them more efficient for this particular application. This will allow researchers to obtain more accurate answers with fewer computer resources.
Johannes Röhrs, Knut-Frode Dagestad, Helene Asbjørnsen, Tor Nordam, Jørgen Skancke, Cathleen E. Jones, and Camilla Brekke
Ocean Sci., 14, 1581–1601, https://doi.org/10.5194/os-14-1581-2018, https://doi.org/10.5194/os-14-1581-2018, 2018
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Simulations of hypothetical oil spills are presented to investigate how the vertical mixing of oil affects transport towards various directions. It is shown that the horizontal transport of oil greatly varies for different oil types and weather conditions. These differences are a consequence of the entrainment of oil from the surface into the ocean. While oil spills often get entrained into the water by waves, we show that submerged oil typically resurfaces after a few hours or days.
Frances Wijnen, Madelijn Strick, Mark Bos, and Erik van Sebille
Geosci. Commun., 7, 91–100, https://doi.org/10.5194/gc-7-91-2024, https://doi.org/10.5194/gc-7-91-2024, 2024
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Climate scientists are urged to communicate climate science; there is very little evidence about what types of communication work well for which audiences. We have performed a systematic literature review to analyze what is known about the efficacy of climate communication by scientists. While we have found more than 60 articles in the last 10 years about climate communication activities by scientists, only 7 of these included some form of evaluation of the impact of the activity.
Siren Rühs, Ton van den Bremer, Emanuela Clementi, Michael C. Denes, Aimie Moulin, and Erik van Sebille
EGUsphere, https://doi.org/10.5194/egusphere-2024-1002, https://doi.org/10.5194/egusphere-2024-1002, 2024
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Simulating the transport of floating particles on the ocean surface is crucial for solving many societal issues. Here, we investigate how the representation of wind-generated surface waves impacts particle transport simulations. We find that different wave-driven processes can alter the transport patterns, and that commonly adopted approximations are not always adequate. This implies that ideally coupled ocean-wave models should be used for surface particle transport simulations.
Anna Leerink, Mark Bos, Daan Reijnders, and Erik van Sebille
EGUsphere, https://doi.org/10.5194/egusphere-2024-543, https://doi.org/10.5194/egusphere-2024-543, 2024
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Climate scientists who communicate to a broad audience may be reluctant to write in a more personal style, because they assume that it hurts their credibility. To test this assumption, we asked 100 Dutch people to rate the credibility of a climate scientist. We varied how the author of the article addressed the reader, and found that the degree of personalisation did not have a measurable impact on the credibility of the author. So we conclude that personalisation may not hurt credibility.
Philippe F. V. W. Frankemölle, Peter D. Nooteboom, Joe Scutt Phillips, Lauriane Escalle, Simon Nicol, and Erik van Sebille
Ocean Sci., 20, 31–41, https://doi.org/10.5194/os-20-31-2024, https://doi.org/10.5194/os-20-31-2024, 2024
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Tuna fisheries in the Pacific often use drifting fish aggregating devices (dFADs) to attract fish that are advected by subsurface flow through underwater appendages. Using a particle advection model, we find that virtual particles advected by surface flow are displaced farther than virtual dFADs. We find a relation between El Niño–Southern Oscillation and circular motion in some areas, influencing dFAD densities. This information helps us to understand processes that drive dFAD distribution.
Stefanie L. Ypma, Quinten Bohte, Alexander Forryan, Alberto C. Naveira Garabato, Andy Donnelly, and Erik van Sebille
Ocean Sci., 18, 1477–1490, https://doi.org/10.5194/os-18-1477-2022, https://doi.org/10.5194/os-18-1477-2022, 2022
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In this research we aim to improve cleanup efforts on the Galapagos Islands of marine plastic debris when resources are limited and the distribution of the plastic on shorelines is unknown. Using a network that describes the flow of macroplastic between the islands we have identified the most efficient cleanup locations, quantified the impact of targeting these locations and showed that shorelines where the plastic is unlikely to leave are likely efficient cleanup locations.
Reint Fischer, Delphine Lobelle, Merel Kooi, Albert Koelmans, Victor Onink, Charlotte Laufkötter, Linda Amaral-Zettler, Andrew Yool, and Erik van Sebille
Biogeosciences, 19, 2211–2234, https://doi.org/10.5194/bg-19-2211-2022, https://doi.org/10.5194/bg-19-2211-2022, 2022
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Since current estimates show that only about 1 % of the all plastic that enters the ocean is floating at the surface, we look at subsurface processes that can cause vertical movement of (micro)plastic. We investigate how modelled algal attachment and the ocean's vertical movement can cause particles to sink and oscillate in the open ocean. Particles can sink to depths of > 5000 m in regions with high wind intensity and mainly remain close to the surface with low winds and biological activity.
Victor Onink, Erik van Sebille, and Charlotte Laufkötter
Geosci. Model Dev., 15, 1995–2012, https://doi.org/10.5194/gmd-15-1995-2022, https://doi.org/10.5194/gmd-15-1995-2022, 2022
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Turbulent mixing is a vital process in 3D modeling of particle transport in the ocean. However, since turbulence occurs on very short spatial scales and timescales, large-scale ocean models generally have highly simplified turbulence representations. We have developed parametrizations for the vertical turbulent transport of buoyant particles that can be easily applied in a large-scale particle tracking model. The predicted vertical concentration profiles match microplastic observations well.
Mikael L. A. Kaandorp, Stefanie L. Ypma, Marijke Boonstra, Henk A. Dijkstra, and Erik van Sebille
Ocean Sci., 18, 269–293, https://doi.org/10.5194/os-18-269-2022, https://doi.org/10.5194/os-18-269-2022, 2022
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A large amount of marine litter, such as plastics, is located on or around beaches. Both the total amount of this litter and its transport are poorly understood. We investigate this by training a machine learning model with data of cleanup efforts on Dutch beaches between 2014 and 2019, obtained by about 14 000 volunteers. We find that Dutch beaches contain up to 30 000 kg of litter, largely depending on tides, oceanic transport, and how exposed the beaches are.
Peter D. Nooteboom, Peter K. Bijl, Christian Kehl, Erik van Sebille, Martin Ziegler, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 13, 357–371, https://doi.org/10.5194/esd-13-357-2022, https://doi.org/10.5194/esd-13-357-2022, 2022
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Having descended through the water column, microplankton in ocean sediments represents the ocean surface environment and is used as an archive of past and present surface oceanographic conditions. However, this microplankton is advected by turbulent ocean currents during its sinking journey. We use simulations of sinking particles to define ocean bottom provinces and detect these provinces in datasets of sedimentary microplankton, which has implications for palaeoclimate reconstructions.
C. Kehl, R. P. B. Fischer, and E. van Sebille
ISPRS Ann. Photogramm. Remote Sens. Spatial Inf. Sci., V-4-2021, 217–224, https://doi.org/10.5194/isprs-annals-V-4-2021-217-2021, https://doi.org/10.5194/isprs-annals-V-4-2021-217-2021, 2021
Rebeca de la Fuente, Gábor Drótos, Emilio Hernández-García, Cristóbal López, and Erik van Sebille
Ocean Sci., 17, 431–453, https://doi.org/10.5194/os-17-431-2021, https://doi.org/10.5194/os-17-431-2021, 2021
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Plastic pollution is a major environmental issue affecting the oceans. The number of floating and sedimented pieces has been quantified by several studies. But their abundance in the water column remains mostly unknown. To fill this gap we model the dynamics of a particular type of particle, rigid microplastics sinking rapidly in open sea in the Mediterranean. We find they represent a small but appreciable fraction of the total sea plastic and discuss characteristics of their sinking motion.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 28, 43–59, https://doi.org/10.5194/npg-28-43-2021, https://doi.org/10.5194/npg-28-43-2021, 2021
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Fluid parcels transported in complicated flows often contain subsets of particles that stay close over finite time intervals. We propose a new method for detecting finite-time coherent sets based on the density-based clustering technique of ordering points to identify the clustering structure (OPTICS). Unlike previous methods, our method has an intrinsic notion of coherent sets at different spatial scales. OPTICS is readily implemented in the SciPy sklearn package, making it easy to use.
Chris S. M. Turney, Richard T. Jones, Nicholas P. McKay, Erik van Sebille, Zoë A. Thomas, Claus-Dieter Hillenbrand, and Christopher J. Fogwill
Earth Syst. Sci. Data, 12, 3341–3356, https://doi.org/10.5194/essd-12-3341-2020, https://doi.org/10.5194/essd-12-3341-2020, 2020
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The Last Interglacial (129–116 ka) experienced global temperatures and sea levels higher than today. The direct contribution of warmer conditions to global sea level (thermosteric) are uncertain. We report a global network of sea surface temperatures. We find mean global annual temperature anomalies of 0.2 ± 0.1˚C and an early maximum peak of 0.9 ± 0.1˚C. Our reconstruction suggests warmer waters contributed on average 0.08 ± 0.1 m and a peak contribution of 0.39 ± 0.1 m to global sea level.
Tor Nordam and Rodrigo Duran
Geosci. Model Dev., 13, 5935–5957, https://doi.org/10.5194/gmd-13-5935-2020, https://doi.org/10.5194/gmd-13-5935-2020, 2020
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In applied oceanography, a common task is to calculate the trajectory of objects floating at the sea surface or submerged in the water. We have investigated different numerical methods for doing such calculations and discuss the benefits and challenges of some common methods. We then propose a small change to some common methods that make them more efficient for this particular application. This will allow researchers to obtain more accurate answers with fewer computer resources.
Linda K. Dämmer, Lennart de Nooijer, Erik van Sebille, Jan G. Haak, and Gert-Jan Reichart
Clim. Past, 16, 2401–2414, https://doi.org/10.5194/cp-16-2401-2020, https://doi.org/10.5194/cp-16-2401-2020, 2020
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The compositions of foraminifera shells often vary with environmental parameters such as temperature or salinity; thus, they can be used as proxies for these environmental variables. Often a single proxy is influenced by more than one parameter. Here, we show that while salinity impacts shell Na / Ca, temperature has no effect. We also show that the combination of different proxies (Mg / Ca and δ18O) to reconstruct salinity does not seem to work as previously thought.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 27, 501–518, https://doi.org/10.5194/npg-27-501-2020, https://doi.org/10.5194/npg-27-501-2020, 2020
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The surface transport of heat, nutrients and plastic in the North Atlantic Ocean is organized into large-scale flow structures. We propose a new and simple method to detect such features in ocean drifter data sets by identifying groups of trajectories with similar dynamical behaviour using network theory. We successfully detect well-known regions such as the Subpolar and Subtropical gyres, the Western Boundary Current region and the Caribbean Sea.
Mirjam van der Mheen, Erik van Sebille, and Charitha Pattiaratchi
Ocean Sci., 16, 1317–1336, https://doi.org/10.5194/os-16-1317-2020, https://doi.org/10.5194/os-16-1317-2020, 2020
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A large percentage of global ocean plastic enters the Indian Ocean through rivers, but the fate of these plastics is generally unknown. In this paper, we use computer simulations to show that floating plastics
beachand end up on coastlines throughout the Indian Ocean. Coastlines where a lot of plastic enters the ocean are heavily affected by beaching plastic, but plastics can also beach far from the source on remote islands and countries that contribute little plastic pollution of their own.
Erik van Sebille, Philippe Delandmeter, John Schofield, Britta Denise Hardesty, Jen Jones, and Andy Donnelly
Ocean Sci., 15, 1341–1349, https://doi.org/10.5194/os-15-1341-2019, https://doi.org/10.5194/os-15-1341-2019, 2019
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The Galápagos Archipelago and Galápagos Marine Reserve are among the world's most iconic wildlife refuges. Yet, plastic litter is now found even in this remote archipelago. It is unclear where this plastic originates from. In this study, we show that remote coastal sources of plastic pollution are fairly localized and limited to South American and Central American coastlines. Identifying how plastic ends up in the Galápagos aids integrated management opportunities to reduce plastic pollution.
Philippe Delandmeter and Erik van Sebille
Geosci. Model Dev., 12, 3571–3584, https://doi.org/10.5194/gmd-12-3571-2019, https://doi.org/10.5194/gmd-12-3571-2019, 2019
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Parcels is a framework to compute how ocean currents transport
stuffsuch as plankton and plastic around. In the latest version 2.0 of Parcels, we focus on more accurate interpolation schemes and implement methods to seamlessly combine data from different sources (such as winds and currents, possibly in different regions). We show that this framework is very efficient for tracking how microplastic is transported through the North Sea into the Arctic.
Johannes Röhrs, Knut-Frode Dagestad, Helene Asbjørnsen, Tor Nordam, Jørgen Skancke, Cathleen E. Jones, and Camilla Brekke
Ocean Sci., 14, 1581–1601, https://doi.org/10.5194/os-14-1581-2018, https://doi.org/10.5194/os-14-1581-2018, 2018
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Simulations of hypothetical oil spills are presented to investigate how the vertical mixing of oil affects transport towards various directions. It is shown that the horizontal transport of oil greatly varies for different oil types and weather conditions. These differences are a consequence of the entrainment of oil from the surface into the ocean. While oil spills often get entrained into the water by waves, we show that submerged oil typically resurfaces after a few hours or days.
Fabrice Ardhuin, Yevgueny Aksenov, Alvise Benetazzo, Laurent Bertino, Peter Brandt, Eric Caubet, Bertrand Chapron, Fabrice Collard, Sophie Cravatte, Jean-Marc Delouis, Frederic Dias, Gérald Dibarboure, Lucile Gaultier, Johnny Johannessen, Anton Korosov, Georgy Manucharyan, Dimitris Menemenlis, Melisa Menendez, Goulven Monnier, Alexis Mouche, Frédéric Nouguier, George Nurser, Pierre Rampal, Ad Reniers, Ernesto Rodriguez, Justin Stopa, Céline Tison, Clément Ubelmann, Erik van Sebille, and Jiping Xie
Ocean Sci., 14, 337–354, https://doi.org/10.5194/os-14-337-2018, https://doi.org/10.5194/os-14-337-2018, 2018
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The Sea surface KInematics Multiscale (SKIM) monitoring mission is a proposal for a future satellite that is designed to measure ocean currents and waves. Using a Doppler radar, the accurate measurement of currents requires the removal of the mean velocity due to ocean wave motions. This paper describes the main processing steps needed to produce currents and wave data from the radar measurements. With this technique, SKIM can provide unprecedented coverage and resolution, over the global ocean.
Michael Lange and Erik van Sebille
Geosci. Model Dev., 10, 4175–4186, https://doi.org/10.5194/gmd-10-4175-2017, https://doi.org/10.5194/gmd-10-4175-2017, 2017
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Here, we present version 0.9 of Parcels (Probably A Really Computationally Efficient Lagrangian Simulator). Parcels is an experimental prototype code aimed at exploring novel approaches for Lagrangian tracking of virtual ocean particles in the petascale age. The modularity, flexibility and scalability will allow the code to be used to track water, nutrients, microbes, plankton, plastic and even fish.
Chris S. M. Turney, Christopher J. Fogwill, Jonathan G. Palmer, Erik van Sebille, Zoë Thomas, Matt McGlone, Sarah Richardson, Janet M. Wilmshurst, Pavla Fenwick, Violette Zunz, Hugues Goosse, Kerry-Jayne Wilson, Lionel Carter, Mathew Lipson, Richard T. Jones, Melanie Harsch, Graeme Clark, Ezequiel Marzinelli, Tracey Rogers, Eleanor Rainsley, Laura Ciasto, Stephanie Waterman, Elizabeth R. Thomas, and Martin Visbeck
Clim. Past, 13, 231–248, https://doi.org/10.5194/cp-13-231-2017, https://doi.org/10.5194/cp-13-231-2017, 2017
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The Southern Ocean plays a fundamental role in global climate but suffers from a dearth of observational data. As the Australasian Antarctic Expedition 2013–2014 we have developed the first annually resolved temperature record using trees from subantarctic southwest Pacific (52–54˚S) to extend the climate record back to 1870. With modelling we show today's high climate variability became established in the ~1940s and likely driven by a Rossby wave response originating from the tropical Pacific.
Christopher J. Fogwill, Erik van Sebille, Eva A. Cougnon, Chris S. M. Turney, Steve R. Rintoul, Benjamin K. Galton-Fenzi, Graeme F. Clark, E. M. Marzinelli, Eleanor B. Rainsley, and Lionel Carter
The Cryosphere, 10, 2603–2609, https://doi.org/10.5194/tc-10-2603-2016, https://doi.org/10.5194/tc-10-2603-2016, 2016
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Here we report new data from in situ oceanographic surveys and high-resolution ocean modelling experiments in the Commonwealth Bay region of East Antarctica, where in 2010 there was a major reconfiguration of the regional icescape due to the collision of the 97 km long iceberg B09B with the Mertz Glacier tongue. Here we compare post-calving observations with high-resolution ocean modelling which suggest that this reconfiguration has led to the development of a new polynya off Commonwealth Bay.
Paulina Cetina-Heredia, Erik van Sebille, Richard Matear, and Moninya Roughan
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-53, https://doi.org/10.5194/bg-2016-53, 2016
Revised manuscript not accepted
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Characterizing phytoplankton growth influences fisheries and climate. We use a lagrangian approach to identify phytoplankton blooms in the Great Australian Bight (GAB), and associate them with nitrate sources. We find that 88 % of the nitrate utilized in blooms is originated between the GAB and the SubAntarctic Front. Large nitrate concentrations are supplied at depth but do not reach the euphotic zone often. As a result, 55 % of blooms utilize nitrate supplied in the top 100 m.
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Wangbin Shen, Zhaohui Lin, Zhengkun Qin, and Juan Li
Geosci. Model Dev., 17, 3447–3465, https://doi.org/10.5194/gmd-17-3447-2024, https://doi.org/10.5194/gmd-17-3447-2024, 2024
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In this study, a land surface image assimilation system capable of optimizing the spatial structure of the background field is constructed by introducing the curvelet analysis method and taking the similarity of image structure as a weak constraint. The findings demonstrate that the assimilation of surface soil moisture observation images effectively and reasonably enhances the spatial structure of soil moisture analysis field.
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Stefan J. Miller, Paul A. Makar, and Colin J. Lee
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Fernanda Alvarado-Neves, Laurent Ailleres, Lachlan Grose, Alexander R. Cruden, and Robin Armit
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Previous work has demonstrated that adding geological knowledge to modelling methods creates more accurate and reliable models. Following this reasoning, we added constraints from magma emplacement mechanisms into existing modelling frameworks to improve the 3D characterisation of igneous intrusions. We tested the method on synthetic and real-world case studies, and the results show that our method can reproduce intrusion morphologies with no manual processing and using realistic datasets.
André R. Brodtkorb, Anna Benedictow, Heiko Klein, Arve Kylling, Agnes Nyiri, Alvaro Valdebenito, Espen Sollum, and Nina Kristiansen
Geosci. Model Dev., 17, 1957–1974, https://doi.org/10.5194/gmd-17-1957-2024, https://doi.org/10.5194/gmd-17-1957-2024, 2024
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It is vital to know the extent and concentration of volcanic ash in the atmosphere during a volcanic eruption. Whilst satellite imagery may give an estimate of the ash right now (assuming no cloud coverage), we also need to know where it will be in the coming hours. This paper presents a method for estimating parameters for a volcanic eruption based on satellite observations of ash in the atmosphere. The software package is open source and applicable to similar inversion scenarios.
Kees Nederhoff, Maarten van Ormondt, Jay Veeramony, Ap van Dongeren, José Antonio Álvarez Antolínez, Tim Leijnse, and Dano Roelvink
Geosci. Model Dev., 17, 1789–1811, https://doi.org/10.5194/gmd-17-1789-2024, https://doi.org/10.5194/gmd-17-1789-2024, 2024
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Forecasting tropical cyclones and their flooding impact is challenging. Our research introduces the Tropical Cyclone Forecasting Framework (TC-FF), enhancing cyclone predictions despite uncertainties. TC-FF generates global wind and flood scenarios, valuable even in data-limited regions. Applied to cases like Cyclone Idai, it showcases potential in bettering disaster preparation, marking progress in handling cyclone threats.
Younghun Kang and Ethan J. Kubatko
Geosci. Model Dev., 17, 1603–1625, https://doi.org/10.5194/gmd-17-1603-2024, https://doi.org/10.5194/gmd-17-1603-2024, 2024
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Models used to simulate the flow of coastal and riverine waters, including flooding, require a geometric representation (or mesh) of geographic features that exhibit a range of disparate spatial scales from large, open waters to small, narrow channels. Representing these features in an accurate way without excessive computational overhead presents a challenge. Here, we develop an automatic mesh generation tool to help address this challenge. Our results demonstrate the efficacy of our approach.
Hui Wan, Kai Zhang, Christopher J. Vogl, Carol S. Woodward, Richard C. Easter, Philip J. Rasch, Yan Feng, and Hailong Wang
Geosci. Model Dev., 17, 1387–1407, https://doi.org/10.5194/gmd-17-1387-2024, https://doi.org/10.5194/gmd-17-1387-2024, 2024
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Sophisticated numerical models of the Earth's atmosphere include representations of many physical and chemical processes. In numerical simulations, these processes need to be calculated in a certain sequence. This study reveals the weaknesses of the sequence of calculations used for aerosol processes in a global atmosphere model. A revision of the sequence is proposed and its impacts on the simulated global aerosol climatology are evaluated.
Christopher J. Vogl, Hui Wan, Carol S. Woodward, and Quan M. Bui
Geosci. Model Dev., 17, 1409–1428, https://doi.org/10.5194/gmd-17-1409-2024, https://doi.org/10.5194/gmd-17-1409-2024, 2024
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Generally speaking, accurate climate simulation requires an accurate evolution of the underlying mathematical equations on large computers. The equations are typically formulated and evolved in process groups. Process coupling refers to how the evolution of each group is combined with that of other groups to evolve the full set of equations for the whole atmosphere. This work presents a mathematical framework to evaluate methods without the need to first implement the methods.
Tom Keel, Chris Brierley, and Tamsin Edwards
Geosci. Model Dev., 17, 1229–1247, https://doi.org/10.5194/gmd-17-1229-2024, https://doi.org/10.5194/gmd-17-1229-2024, 2024
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Jet streams are an important control on surface weather as their speed and shape can modify the properties of weather systems. Establishing trends in the operation of jet streams may provide some indication of the future of weather in a warming world. Despite this, it has not been easy to establish trends, as many methods have been used to characterise them in data. We introduce a tool containing various implementations of jet stream statistics and algorithms that works in a standardised manner.
Amir Golparvar, Matthias Kästner, and Martin Thullner
Geosci. Model Dev., 17, 881–898, https://doi.org/10.5194/gmd-17-881-2024, https://doi.org/10.5194/gmd-17-881-2024, 2024
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Coupled reaction transport modelling is an established and beneficial method for studying natural and synthetic porous material, with applications ranging from industrial processes to natural decompositions in terrestrial environments. Up to now, a framework that explicitly considers the porous structure (e.g. from µ-CT images) for modelling the transport of reactive species is missing. We presented a model that overcomes this limitation and represents a novel numerical simulation toolbox.
Stefan Hergarten
Geosci. Model Dev., 17, 781–794, https://doi.org/10.5194/gmd-17-781-2024, https://doi.org/10.5194/gmd-17-781-2024, 2024
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The Voellmy rheology has been widely used for simulating snow and rock avalanches. Recently, a modified version of this rheology was proposed, which turned out to be able to predict the observed long runout of large rock avalanches theoretically. The software MinVoellmy presented here is the first numerical implementation of the modified rheology. It consists of MATLAB and Python classes, where simplicity and parsimony were the design goals.
Arjun Babu Nellikkattil, Danielle Lemmon, Travis Allen O'Brien, June-Yi Lee, and Jung-Eun Chu
Geosci. Model Dev., 17, 301–320, https://doi.org/10.5194/gmd-17-301-2024, https://doi.org/10.5194/gmd-17-301-2024, 2024
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This study introduces a new computational framework called Scalable Feature Extraction and Tracking (SCAFET), designed to extract and track features in climate data. SCAFET stands out by using innovative shape-based metrics to identify features without relying on preconceived assumptions about the climate model or mean state. This approach allows more accurate comparisons between different models and scenarios.
Mohammad Mortezazadeh, Jean-François Cossette, Ashu Dastoor, Jean de Grandpré, Irena Ivanova, and Abdessamad Qaddouri
Geosci. Model Dev., 17, 335–346, https://doi.org/10.5194/gmd-17-335-2024, https://doi.org/10.5194/gmd-17-335-2024, 2024
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The interpolation process is the most computationally expensive step of the semi-Lagrangian (SL) approach. In this paper we implement a new interpolation scheme into the semi-Lagrangian approach which has the same computational cost as a third-order polynomial scheme but with the accuracy of a fourth-order interpolation scheme. This improvement is achieved by using two third-order backward and forward polynomial interpolation schemes in two consecutive time steps.
Boris Gailleton, Luca C. Malatesta, Guillaume Cordonnier, and Jean Braun
Geosci. Model Dev., 17, 71–90, https://doi.org/10.5194/gmd-17-71-2024, https://doi.org/10.5194/gmd-17-71-2024, 2024
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This contribution presents a new method to numerically explore the evolution of mountain ranges and surrounding areas. The method helps in monitoring with details on the timing and travel path of material eroded from the mountain ranges. It is particularly well suited to studies juxtaposing different domains – lakes or multiple rock types, for example – and enables the combination of different processes.
Denise Degen, Daniel Caviedes Voullième, Susanne Buiter, Harrie-Jan Hendricks Franssen, Harry Vereecken, Ana González-Nicolás, and Florian Wellmann
Geosci. Model Dev., 16, 7375–7409, https://doi.org/10.5194/gmd-16-7375-2023, https://doi.org/10.5194/gmd-16-7375-2023, 2023
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In geosciences, we often use simulations based on physical laws. These simulations can be computationally expensive, which is a problem if simulations must be performed many times (e.g., to add error bounds). We show how a novel machine learning method helps to reduce simulation time. In comparison to other approaches, which typically only look at the output of a simulation, the method considers physical laws in the simulation itself. The method provides reliable results faster than standard.
Carlos Spa, Otilio Rojas, and Josep de la Puente
Geosci. Model Dev., 16, 7237–7252, https://doi.org/10.5194/gmd-16-7237-2023, https://doi.org/10.5194/gmd-16-7237-2023, 2023
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This paper develops a calibration methodology of all absorbing techniques typically used by Fourier pseudo-spectral time-domain (PSTD) methods for geoacoustic wave simulations. The main contributions of the paper are (a) an implementation and quantitative comparison of all absorbing techniques available for PSTD methods through a simple and robust numerical experiment, and (b) a validation of these absorbing techniques in several 3-D seismic scenarios with gradual heterogeneity complexities.
Michael Hillier, Florian Wellmann, Eric A. de Kemp, Boyan Brodaric, Ernst Schetselaar, and Karine Bédard
Geosci. Model Dev., 16, 6987–7012, https://doi.org/10.5194/gmd-16-6987-2023, https://doi.org/10.5194/gmd-16-6987-2023, 2023
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Neural networks can be used effectively to model three-dimensional geological structures from point data, sampling geological interfaces, units, and structural orientations. Existing neural network approaches for this type of modelling are advanced by the efficient incorporation of unconformities, new knowledge inputs, and improved data fitting techniques. These advances permit the modelling of more complex geology in diverse geological settings, different-sized areas, and various data regimes.
Gianandrea Mannarini, Mario Leonardo Salinas, Lorenzo Carelli, Nicola Petacco, and Josip Orović
EGUsphere, https://doi.org/10.5194/egusphere-2023-2060, https://doi.org/10.5194/egusphere-2023-2060, 2023
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Ship weather routing has the potential to reduce CO2 emissions, but it currently lacks open and verifiable research. The Python-refactored VISIR-2 model considers currents, waves, and wind to optimise routes. The model was validated and its computational performance is now quasi-linear. VISIR-2 yields, for more than ten days in a year, two-digit savings for a ferry sailing in the Mediterranean Sea. Sailboat routes with wind and currents can be optimised as well.
Soyoung Ha, Jonathan J. Guerrette, Ivette Hernandez Banos, William C. Skamarock, and Michael G. Duda
EGUsphere, https://doi.org/10.5194/egusphere-2023-2299, https://doi.org/10.5194/egusphere-2023-2299, 2023
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To mitigate the imbalances in the initial conditions, this study introduces our recent implementation of the the incremental analysis update (IAU) in the Model for Prediction Across Scales for the Atmospheric component (MPAS-A), coupled with the Joint Effort for Data assimilation Integration (JEDI), through the cycling system. A month-long cycling run demonstrates the successful implementation of the IAU capability in the MPAS-JEDI cycling system.
Mathieu Gravey and Grégoire Mariethoz
Geosci. Model Dev., 16, 5265–5279, https://doi.org/10.5194/gmd-16-5265-2023, https://doi.org/10.5194/gmd-16-5265-2023, 2023
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Multiple‐point geostatistics are widely used to simulate complex spatial structures based on a training image. The use of these methods relies on the possibility of finding optimal training images and parametrization of the simulation algorithms. Here, we propose finding an optimal set of parameters using only the training image as input. The main advantage of our approach is to remove the risk of overfitting an objective function.
Siting Li, Ping Wang, Hong Wang, Yue Peng, Zhaodong Liu, Wenjie Zhang, Hongli Liu, Yaqiang Wang, Huizheng Che, and Xiaoye Zhang
Geosci. Model Dev., 16, 4171–4191, https://doi.org/10.5194/gmd-16-4171-2023, https://doi.org/10.5194/gmd-16-4171-2023, 2023
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Optimizing the initial state of atmospheric chemistry model input is one of the most essential methods to improve forecast accuracy. Considering the large computational load of the model, we introduce an ensemble optimal interpolation scheme (EnOI) for operational use and efficient updating of the initial fields of chemical components. The results suggest that EnOI provides a practical and cost-effective technique for improving the accuracy of chemical weather numerical forecasts.
Thomas Richter, Véronique Dansereau, Christian Lessig, and Piotr Minakowski
Geosci. Model Dev., 16, 3907–3926, https://doi.org/10.5194/gmd-16-3907-2023, https://doi.org/10.5194/gmd-16-3907-2023, 2023
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Sea ice covers not only the pole regions but affects the weather and climate globally. For example, its white surface reflects more sunlight than land. The oceans around the poles are therefore kept cool, which affects the circulation in the oceans worldwide. Simulating the behavior and changes in sea ice on a computer is, however, very difficult. We propose a new computer simulation that better models how cracks in the ice change over time and show this by comparing to other simulations.
Federica Castino, Feijia Yin, Volker Grewe, Hiroshi Yamashita, Sigrun Matthes, Simone Dietmüller, Sabine Baumann, Manuel Soler, Abolfazl Simorgh, Maximilian Mendiguchia Meuser, Florian Linke, and Benjamin Lührs
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-88, https://doi.org/10.5194/gmd-2023-88, 2023
Revised manuscript accepted for GMD
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We introduce SolFinder 1.0, a decision-making tool to select trade-offs between different objective functions, including fuel use, flight time, NOx emissions, contrail distance, and climate impact. The module is included in the AirTraf 3.0 submodel, which optimizes trajectories under weather conditions simulated by an atmospheric model (EMAC). This paper focuses on the ability of the module to identify eco-efficient trajectories, which reduce the flights climate impact at limited cost penalties.
Emma J. MacKie, Michael Field, Lijing Wang, Zhen Yin, Nathan Schoedl, Matthew Hibbs, and Allan Zhang
Geosci. Model Dev., 16, 3765–3783, https://doi.org/10.5194/gmd-16-3765-2023, https://doi.org/10.5194/gmd-16-3765-2023, 2023
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Earth scientists often have to fill in spatial gaps in measurements. This gap-filling or interpolation can be accomplished with geostatistical methods, where the statistical relationships between measurements are used to inform how these gaps should be filled. Despite the broad utility of these methods, there are few freely available geostatistical software applications. We present GStatSim, a Python package for performing different geostatistical interpolation methods.
Ian Madden, Simone Marras, and Jenny Suckale
Geosci. Model Dev., 16, 3479–3500, https://doi.org/10.5194/gmd-16-3479-2023, https://doi.org/10.5194/gmd-16-3479-2023, 2023
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To aid risk managers who may wish to rapidly assess tsunami risk but may lack high-performance computing infrastructure, we provide an accessible software package able to rapidly model tsunami inundation over real topography by leveraging Google's Tensor Processing Unit, a high-performance hardware. Minimally trained users can take advantage of the rapid modeling abilities provided by this package via a web browser thanks to the ease of use of Google Cloud Platform.
Youtong Rong, Paul Bates, and Jeffrey Neal
Geosci. Model Dev., 16, 3291–3311, https://doi.org/10.5194/gmd-16-3291-2023, https://doi.org/10.5194/gmd-16-3291-2023, 2023
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A novel subgrid channel (SGC) model is developed for river–floodplain modelling, allowing utilization of subgrid-scale bathymetric information while performing computations on relatively coarse grids. By including adaptive artificial diffusion, potential numerical instability, which the original SGC solver had, in low-friction regions such as urban areas is addressed. Evaluation of the new SGC model through structured tests confirmed that the accuracy and stability have improved.
Xiaqiong Zhou and Hann-Ming Henry Juang
Geosci. Model Dev., 16, 3263–3274, https://doi.org/10.5194/gmd-16-3263-2023, https://doi.org/10.5194/gmd-16-3263-2023, 2023
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The National Centers for Environmental Prediction Global Forecast System version 16 experienced model instability failures in real-time runs resolved by increasing the minimum thickness depth parameter. Further investigation revealed that the issue was caused by the advection of geopotential heights at the model's layer interfaces. By replacing high-order boundary conditions with zero-gradient boundary conditions for interface-wind reconstruction, the instability was effectively addressed.
Grant T. Euen, Shangxin Liu, Rene Gassmöller, Timo Heister, and Scott D. King
Geosci. Model Dev., 16, 3221–3239, https://doi.org/10.5194/gmd-16-3221-2023, https://doi.org/10.5194/gmd-16-3221-2023, 2023
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Due to the increasing availability of high-performance computing over the past few decades, numerical models have become an important tool for research. Here we test two geodynamic codes that produce such models: ASPECT, a newer code, and CitcomS, an older one. We show that they produce solutions that are extremely close. As methods and codes become more complex over time, showing reproducibility allows us to seamlessly link previously known information to modern methodologies.
Mohammad Kazem Sharifian, Georges Kesserwani, Alovya Ahmed Chowdhury, Jeffrey Neal, and Paul Bates
Geosci. Model Dev., 16, 2391–2413, https://doi.org/10.5194/gmd-16-2391-2023, https://doi.org/10.5194/gmd-16-2391-2023, 2023
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This paper describes a new release of the LISFLOOD-FP model for fast and efficient flood simulations. It features a new non-uniform grid generator that uses multiwavelet analyses to sensibly coarsens the resolutions where the local topographic variations are smooth. Moreover, the model is parallelised on the graphical processing units (GPUs) to further boost computational efficiency. The performance of the model is assessed for five real-world case studies, noting its potential applications.
Bruno K. Zürcher
Geosci. Model Dev., 16, 1697–1711, https://doi.org/10.5194/gmd-16-1697-2023, https://doi.org/10.5194/gmd-16-1697-2023, 2023
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We present a novel algorithm to efficiently compute Barnes interpolation, which is a method for transforming data values recorded at irregularly spaced points into a corresponding regular grid. In contrast to naive implementations with an algorithmic complexity that depends on the product of the number of sample points and the number of grid points, our approach reduces this dependency to their sum.
David H. Marsico and Paul A. Ullrich
Geosci. Model Dev., 16, 1537–1551, https://doi.org/10.5194/gmd-16-1537-2023, https://doi.org/10.5194/gmd-16-1537-2023, 2023
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Climate models involve several different components, such as the atmosphere, ocean, and land models. Information needs to be exchanged, or remapped, between these models, and devising algorithms for performing this exchange is important for ensuring the accuracy of climate simulations. In this paper, we examine the efficacy of several traditional and novel approaches to remapping on the sphere and demonstrate where our approaches offer improvement.
Moritz Liebl, Jörg Robl, Stefan Hergarten, David Lundbek Egholm, and Kurt Stüwe
Geosci. Model Dev., 16, 1315–1343, https://doi.org/10.5194/gmd-16-1315-2023, https://doi.org/10.5194/gmd-16-1315-2023, 2023
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In this study, we benchmark a topography-based model for glacier erosion (OpenLEM) with a well-established process-based model (iSOSIA). Our experiments show that large-scale erosion patterns and particularly the transformation of valley length geometry from fluvial to glacial conditions are very similar in both models. This finding enables the application of OpenLEM to study the influence of climate and tectonics on glaciated mountains with reasonable computational effort on standard PCs.
James Kent, Thomas Melvin, and Golo Albert Wimmer
Geosci. Model Dev., 16, 1265–1276, https://doi.org/10.5194/gmd-16-1265-2023, https://doi.org/10.5194/gmd-16-1265-2023, 2023
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This paper introduces the Met Office's new shallow water model. The shallow water model is a building block towards the Met Office's new atmospheric dynamical core. The shallow water model is tested on a number of standard spherical shallow water test cases, including flow over mountains and unstable jets. Results show that the model produces similar results to other shallow water models in the literature.
Anthony Gruber, Max Gunzburger, Lili Ju, Rihui Lan, and Zhu Wang
Geosci. Model Dev., 16, 1213–1229, https://doi.org/10.5194/gmd-16-1213-2023, https://doi.org/10.5194/gmd-16-1213-2023, 2023
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This work applies a novel technical tool, multifidelity Monte Carlo (MFMC) estimation, to three climate-related benchmark experiments involving oceanic, atmospheric, and glacial modeling. By considering useful quantities such as maximum sea height and total (kinetic) energy, we show that MFMC leads to predictions which are more accurate and less costly than those obtained by standard methods. This suggests MFMC as a potential drop-in replacement for estimation in realistic climate models.
Piyoosh Jaysaval, Glenn E. Hammond, and Timothy C. Johnson
Geosci. Model Dev., 16, 961–976, https://doi.org/10.5194/gmd-16-961-2023, https://doi.org/10.5194/gmd-16-961-2023, 2023
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We present a robust and highly scalable implementation of numerical forward modeling and inversion algorithms for geophysical electrical resistivity tomography data. The implementation is publicly available and developed within the framework of PFLOTRAN (http://www.pflotran.org), an open-source, state-of-the-art massively parallel subsurface flow and transport simulation code. The paper details all the theoretical and implementation aspects of the new capabilities along with test examples.
Lucas Schauer, Michael J. Schmidt, Nicholas B. Engdahl, Stephen D. Pankavich, David A. Benson, and Diogo Bolster
Geosci. Model Dev., 16, 833–849, https://doi.org/10.5194/gmd-16-833-2023, https://doi.org/10.5194/gmd-16-833-2023, 2023
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We develop a multi-dimensional, parallelized domain decomposition strategy for mass-transfer particle tracking methods in two and three dimensions, investigate different procedures for decomposing the domain, and prescribe an optimal tiling based on physical problem parameters and the number of available CPU cores. For an optimally subdivided diffusion problem, the parallelized algorithm achieves nearly perfect linear speedup in comparison with the serial run-up to thousands of cores.
John Mern and Jef Caers
Geosci. Model Dev., 16, 289–313, https://doi.org/10.5194/gmd-16-289-2023, https://doi.org/10.5194/gmd-16-289-2023, 2023
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In this work, we formulate the sequential geoscientific data acquisition problem as a problem that is similar to playing chess against nature, except the pieces are not fully observed. Solutions to these problems are given in AI and rarely used in geoscientific data planning. We illustrate our approach to a simple 2D problem of mineral exploration.
Jevgenijs Steinbuks, Yongyang Cai, Jonas Jaegermeyr, and Thomas W. Hertel
EGUsphere, https://doi.org/10.5194/egusphere-2022-863, https://doi.org/10.5194/egusphere-2022-863, 2023
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This paper applies cutting-edge numerical methods to show how uncertain climate change and technological progress affect the future utilization of the scarce world's land resources. The paper's key insight is to illustrate how much global cropland will expand when future crop yields are unknown. The more uncertain the future crop yields are, the more forest conversion will be necessary to sustain human welfare. Some of that conversion takes place even when crop yields are not actually affected.
Ziqi Gao, Yifeng Wang, Petros Vasilakos, Cesunica E. Ivey, Khanh Do, and Armistead G. Russell
Geosci. Model Dev., 15, 9015–9029, https://doi.org/10.5194/gmd-15-9015-2022, https://doi.org/10.5194/gmd-15-9015-2022, 2022
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While the national ambient air quality standard of ozone is based on the 3-year average of the fourth highest 8 h maximum (MDA8) ozone concentrations, these predicted extreme values using numerical methods are always biased low. We built four computational models (GAM, MARS, random forest and SVR) to predict the fourth highest MDA8 ozone in Southern California using precursor emissions, meteorology and climatological patterns. All models presented acceptable performance, with GAM being the best.
Zhihao Wang, Jason Goetz, and Alexander Brenning
Geosci. Model Dev., 15, 8765–8784, https://doi.org/10.5194/gmd-15-8765-2022, https://doi.org/10.5194/gmd-15-8765-2022, 2022
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A lack of inventory data can be a limiting factor in developing landslide predictive models, which are crucial for supporting hazard policy and decision-making. We show how case-based reasoning and domain adaptation (transfer-learning techniques) can effectively retrieve similar landslide modeling situations for prediction in new data-scarce areas. Using cases in Italy, Austria, and Ecuador, our findings support the application of transfer learning for areas that require rapid model development.
Till Sachau, Haibin Yang, Justin Lang, Paul D. Bons, and Louis Moresi
Geosci. Model Dev., 15, 8749–8764, https://doi.org/10.5194/gmd-15-8749-2022, https://doi.org/10.5194/gmd-15-8749-2022, 2022
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Knowledge of the internal structures of the major continental ice sheets is improving, thanks to new investigative techniques. These structures are an essential indication of the flow behavior and dynamics of ice transport, which in turn is important for understanding the actual impact of the vast amounts of water trapped in continental ice sheets on global sea-level rise. The software studied here is specifically designed to simulate such structures and their evolution.
Keith J. Roberts, Alexandre Olender, Lucas Franceschini, Robert C. Kirby, Rafael S. Gioria, and Bruno S. Carmo
Geosci. Model Dev., 15, 8639–8667, https://doi.org/10.5194/gmd-15-8639-2022, https://doi.org/10.5194/gmd-15-8639-2022, 2022
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Finite-element methods (FEMs) permit the use of more flexible unstructured meshes but are rarely used in full waveform inversions (FWIs), an iterative process that reconstructs velocity models of earth’s subsurface, due to computational and memory storage costs. To reduce those costs, novel software is presented allowing the use of high-order mass-lumped FEMs on triangular meshes, together with a material-property mesh-adaptation performance-enhancing strategy, enabling its use in FWIs.
Konstantinos Papadakis, Yann Pfau-Kempf, Urs Ganse, Markus Battarbee, Markku Alho, Maxime Grandin, Maxime Dubart, Lucile Turc, Hongyang Zhou, Konstantinos Horaites, Ivan Zaitsev, Giulia Cozzani, Maarja Bussov, Evgeny Gordeev, Fasil Tesema, Harriet George, Jonas Suni, Vertti Tarvus, and Minna Palmroth
Geosci. Model Dev., 15, 7903–7912, https://doi.org/10.5194/gmd-15-7903-2022, https://doi.org/10.5194/gmd-15-7903-2022, 2022
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Vlasiator is a plasma simulation code that simulates the entire near-Earth space at a global scale. As 6D simulations require enormous amounts of computational resources, Vlasiator uses adaptive mesh refinement (AMR) to lighten the computational burden. However, due to Vlasiator’s grid topology, AMR simulations suffer from grid aliasing artifacts that affect the global results. In this work, we present and evaluate the performance of a mechanism for alleviating those artifacts.
Artur Safin, Damien Bouffard, Firat Ozdemir, Cintia L. Ramón, James Runnalls, Fotis Georgatos, Camille Minaudo, and Jonas Šukys
Geosci. Model Dev., 15, 7715–7730, https://doi.org/10.5194/gmd-15-7715-2022, https://doi.org/10.5194/gmd-15-7715-2022, 2022
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Reconciling the differences between numerical model predictions and observational data is always a challenge. In this paper, we investigate the viability of a novel approach to the calibration of a three-dimensional hydrodynamic model of Lake Geneva, where the target parameters are inferred in terms of distributions. We employ a filtering technique that generates physically consistent model trajectories and implement a neural network to enable bulk-to-skin temperature conversion.
Colin Grudzien and Marc Bocquet
Geosci. Model Dev., 15, 7641–7681, https://doi.org/10.5194/gmd-15-7641-2022, https://doi.org/10.5194/gmd-15-7641-2022, 2022
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Iterative optimization techniques, the state of the art in data assimilation, have largely focused on extending forecast accuracy to moderate- to long-range forecast systems. However, current methodology may not be cost-effective in reducing forecast errors in online, short-range forecast systems. We propose a novel optimization of these techniques for online, short-range forecast cycles, simultaneously providing an improvement in forecast accuracy and a reduction in the computational cost.
Yangyang Yu, Shaoqing Zhang, Haohuan Fu, Lixin Wu, Dexun Chen, Yang Gao, Zhiqiang Wei, Dongning Jia, and Xiaopei Lin
Geosci. Model Dev., 15, 6695–6708, https://doi.org/10.5194/gmd-15-6695-2022, https://doi.org/10.5194/gmd-15-6695-2022, 2022
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To understand the scientific consequence of perturbations caused by slave cores in heterogeneous computing environments, we examine the influence of perturbation amplitudes on the determination of the cloud bottom and cloud top and compute the probability density function (PDF) of generated clouds. A series of comparisons of the PDFs between homogeneous and heterogeneous systems show consistently acceptable error tolerances when using slave cores in heterogeneous computing environments.
Vijay S. Mahadevan, Jorge E. Guerra, Xiangmin Jiao, Paul Kuberry, Yipeng Li, Paul Ullrich, David Marsico, Robert Jacob, Pavel Bochev, and Philip Jones
Geosci. Model Dev., 15, 6601–6635, https://doi.org/10.5194/gmd-15-6601-2022, https://doi.org/10.5194/gmd-15-6601-2022, 2022
Short summary
Short summary
Coupled Earth system models require transfer of field data between multiple components with varying spatial resolutions to determine the correct climate behavior. We present the Metrics for Intercomparison of Remapping Algorithms (MIRA) protocol to evaluate the accuracy, conservation properties, monotonicity, and local feature preservation of four different remapper algorithms for various unstructured mesh problems of interest. Future extensions to more practical use cases are also discussed.
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Short summary
We describe and compare two common methods, Eulerian and Lagrangian models, used to simulate the vertical transport of material in the ocean. They both solve the same transport problems but use different approaches for representing the underlying equations on the computer. The main focus of our study is on the numerical accuracy of the two approaches. Our results should be useful for other researchers creating or using these types of transport models.
We describe and compare two common methods, Eulerian and Lagrangian models, used to simulate the...
