Articles | Volume 15, issue 20
https://doi.org/10.5194/gmd-15-7573-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-15-7573-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model evaluation paper
| 
19 Oct 2022
Model evaluation paper |
| 19 Oct 2022
Low sensitivity of three terrestrial biosphere models to soil texture over the South American tropics
Félicien Meunier
CORRESPONDING AUTHOR
Computational and Applied Vegetation Ecology, Department of Environment, Ghent University, Ghent, 9000, Belgium
Wim Verbruggen
Computational and Applied Vegetation Ecology, Department of Environment, Ghent University, Ghent, 9000, Belgium
Department of Geosciences and Natural Resource Management, University of Copenhagen, Copenhagen, 1350, Denmark
Hans Verbeeck
Computational and Applied Vegetation Ecology, Department of Environment, Ghent University, Ghent, 9000, Belgium
Marc Peaucelle
Computational and Applied Vegetation Ecology, Department of Environment, Ghent University, Ghent, 9000, Belgium
INRAE, Université de Bordeaux, UMR 1391 ISPA, 33140 Villenave-d'Ornon, France
Related authors
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-140, https://doi.org/10.5194/bg-2023-140, 2023
Preprint under review for BG
Short summary
Short summary
The Chinese subtropical forest ecosystems are an extremely important component of those global forest ecosystems and are hence crucial for the global carbon cycle and regional climate change. However, there is still a great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. Here, we provided the first quantitative estimates of the individual and interactive effects of different drivers on the GPP of various subtropical forest types in China.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
Short summary
Short summary
We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Jan Vanderborght, Valentin Couvreur, Felicien Meunier, Andrea Schnepf, Harry Vereecken, Martin Bouda, and Mathieu Javaux
Hydrol. Earth Syst. Sci., 25, 4835–4860, https://doi.org/10.5194/hess-25-4835-2021, https://doi.org/10.5194/hess-25-4835-2021, 2021
Short summary
Short summary
Root water uptake is an important process in the terrestrial water cycle. How this process depends on soil water content, root distributions, and root properties is a soil–root hydraulic problem. We compare different approaches to implementing root hydraulics in macroscopic soil water flow and land surface models.
Hannes P. T. De Deurwaerder, Marco D. Visser, Matteo Detto, Pascal Boeckx, Félicien Meunier, Kathrin Kuehnhammer, Ruth-Kristina Magh, John D. Marshall, Lixin Wang, Liangju Zhao, and Hans Verbeeck
Biogeosciences, 17, 4853–4870, https://doi.org/10.5194/bg-17-4853-2020, https://doi.org/10.5194/bg-17-4853-2020, 2020
Short summary
Short summary
The depths at which plants take up water is challenging to observe directly. To do so, scientists have relied on measuring the isotopic composition of xylem water as this provides information on the water’s source. Our work shows that this isotopic composition changes throughout the day, which complicates the interpretation of the water’s source and has been currently overlooked. We build a model to help understand the origin of these composition changes and their consequences for science.
Valentin Couvreur, Youri Rothfuss, Félicien Meunier, Thierry Bariac, Philippe Biron, Jean-Louis Durand, Patricia Richard, and Mathieu Javaux
Hydrol. Earth Syst. Sci., 24, 3057–3075, https://doi.org/10.5194/hess-24-3057-2020, https://doi.org/10.5194/hess-24-3057-2020, 2020
Short summary
Short summary
Isotopic labeling of soil water is a broadly used tool for tracing the origin of water extracted by plants and computing root water uptake (RWU) profiles with multisource mixing models. In this study, we show how a method such as this may misconstrue time series of xylem water isotopic composition as the temporal dynamics of RWU by simulating data collected during a tall fescue rhizotron experiment with an isotope-enabled physical soil–root model accounting for variability in root traits.
Mehdi Rahmati, Lutz Weihermüller, Jan Vanderborght, Yakov A. Pachepsky, Lili Mao, Seyed Hamidreza Sadeghi, Niloofar Moosavi, Hossein Kheirfam, Carsten Montzka, Kris Van Looy, Brigitta Toth, Zeinab Hazbavi, Wafa Al Yamani, Ammar A. Albalasmeh, Ma'in Z. Alghzawi, Rafael Angulo-Jaramillo, Antônio Celso Dantas Antonino, George Arampatzis, Robson André Armindo, Hossein Asadi, Yazidhi Bamutaze, Jordi Batlle-Aguilar, Béatrice Béchet, Fabian Becker, Günter Blöschl, Klaus Bohne, Isabelle Braud, Clara Castellano, Artemi Cerdà, Maha Chalhoub, Rogerio Cichota, Milena Císlerová, Brent Clothier, Yves Coquet, Wim Cornelis, Corrado Corradini, Artur Paiva Coutinho, Muriel Bastista de Oliveira, José Ronaldo de Macedo, Matheus Fonseca Durães, Hojat Emami, Iraj Eskandari, Asghar Farajnia, Alessia Flammini, Nándor Fodor, Mamoun Gharaibeh, Mohamad Hossein Ghavimipanah, Teamrat A. Ghezzehei, Simone Giertz, Evangelos G. Hatzigiannakis, Rainer Horn, Juan José Jiménez, Diederik Jacques, Saskia Deborah Keesstra, Hamid Kelishadi, Mahboobeh Kiani-Harchegani, Mehdi Kouselou, Madan Kumar Jha, Laurent Lassabatere, Xiaoyan Li, Mark A. Liebig, Lubomír Lichner, María Victoria López, Deepesh Machiwal, Dirk Mallants, Micael Stolben Mallmann, Jean Dalmo de Oliveira Marques, Miles R. Marshall, Jan Mertens, Félicien Meunier, Mohammad Hossein Mohammadi, Binayak P. Mohanty, Mansonia Pulido-Moncada, Suzana Montenegro, Renato Morbidelli, David Moret-Fernández, Ali Akbar Moosavi, Mohammad Reza Mosaddeghi, Seyed Bahman Mousavi, Hasan Mozaffari, Kamal Nabiollahi, Mohammad Reza Neyshabouri, Marta Vasconcelos Ottoni, Theophilo Benedicto Ottoni Filho, Mohammad Reza Pahlavan-Rad, Andreas Panagopoulos, Stephan Peth, Pierre-Emmanuel Peyneau, Tommaso Picciafuoco, Jean Poesen, Manuel Pulido, Dalvan José Reinert, Sabine Reinsch, Meisam Rezaei, Francis Parry Roberts, David Robinson, Jesús Rodrigo-Comino, Otto Corrêa Rotunno Filho, Tadaomi Saito, Hideki Suganuma, Carla Saltalippi, Renáta Sándor, Brigitta Schütt, Manuel Seeger, Nasrollah Sepehrnia, Ehsan Sharifi Moghaddam, Manoj Shukla, Shiraki Shutaro, Ricardo Sorando, Ajayi Asishana Stanley, Peter Strauss, Zhongbo Su, Ruhollah Taghizadeh-Mehrjardi, Encarnación Taguas, Wenceslau Geraldes Teixeira, Ali Reza Vaezi, Mehdi Vafakhah, Tomas Vogel, Iris Vogeler, Jana Votrubova, Steffen Werner, Thierry Winarski, Deniz Yilmaz, Michael H. Young, Steffen Zacharias, Yijian Zeng, Ying Zhao, Hong Zhao, and Harry Vereecken
Earth Syst. Sci. Data, 10, 1237–1263, https://doi.org/10.5194/essd-10-1237-2018, https://doi.org/10.5194/essd-10-1237-2018, 2018
Short summary
Short summary
This paper presents and analyzes a global database of soil infiltration data, the SWIG database, for the first time. In total, 5023 infiltration curves were collected across all continents in the SWIG database. These data were either provided and quality checked by the scientists or they were digitized from published articles. We are convinced that the SWIG database will allow for a better parameterization of the infiltration process in land surface models and for testing infiltration models.
Sathyanarayan Rao, Félicien Meunier, Solomon Ehosioke, Nolwenn Lesparre, Andreas Kemna, Frédéric Nguyen, Sarah Garré, and Mathieu Javaux
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-280, https://doi.org/10.5194/bg-2018-280, 2018
Revised manuscript not accepted
Short summary
Short summary
This paper illustrates the impact of electrical property of maize root segments on the Electrical Resistivity Tomography (ERT) inversion results with the help of numerical model. The model includes explicit root representation in the finite element mesh with root growth, transpiration and root water uptake. We show that, ignoring root segments could lead to wrong estimation of water content using ERT method.
Félicien Meunier, Valentin Couvreur, Xavier Draye, Mohsen Zarebanadkouki, Jan Vanderborght, and Mathieu Javaux
Hydrol. Earth Syst. Sci., 21, 6519–6540, https://doi.org/10.5194/hess-21-6519-2017, https://doi.org/10.5194/hess-21-6519-2017, 2017
Short summary
Short summary
To maintain its yield, a plant needs to transpire water that it acquires from the soil. A deep understanding of the mechanisms that lead to water uptake location and intensity is required to correctly simulate the water transfer in the soil to the atmosphere. This work presents novel and general solutions of the water flow equation in roots with varying hydraulic properties that deeply affect the uptake pattern and the transpiration rate and can be used in ecohydrological models.
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-140, https://doi.org/10.5194/bg-2023-140, 2023
Preprint under review for BG
Short summary
Short summary
The Chinese subtropical forest ecosystems are an extremely important component of those global forest ecosystems and are hence crucial for the global carbon cycle and regional climate change. However, there is still a great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. Here, we provided the first quantitative estimates of the individual and interactive effects of different drivers on the GPP of various subtropical forest types in China.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
Short summary
Short summary
The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Flossie Brown, Gerd A. Folberth, Stephen Sitch, Susanne Bauer, Marijn Bauters, Pascal Boeckx, Alexander W. Cheesman, Makoto Deushi, Inês Dos Santos Vieira, Corinne Galy-Lacaux, James Haywood, James Keeble, Lina M. Mercado, Fiona M. O'Connor, Naga Oshima, Kostas Tsigaridis, and Hans Verbeeck
Atmos. Chem. Phys., 22, 12331–12352, https://doi.org/10.5194/acp-22-12331-2022, https://doi.org/10.5194/acp-22-12331-2022, 2022
Short summary
Short summary
Surface ozone can decrease plant productivity and impair human health. In this study, we evaluate the change in surface ozone due to climate change over South America and Africa using Earth system models. We find that if the climate were to change according to the worst-case scenario used here, models predict that forested areas in biomass burning locations and urban populations will be at increasing risk of ozone exposure, but other areas will experience a climate benefit.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
Short summary
Short summary
We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Jan Vanderborght, Valentin Couvreur, Felicien Meunier, Andrea Schnepf, Harry Vereecken, Martin Bouda, and Mathieu Javaux
Hydrol. Earth Syst. Sci., 25, 4835–4860, https://doi.org/10.5194/hess-25-4835-2021, https://doi.org/10.5194/hess-25-4835-2021, 2021
Short summary
Short summary
Root water uptake is an important process in the terrestrial water cycle. How this process depends on soil water content, root distributions, and root properties is a soil–root hydraulic problem. We compare different approaches to implementing root hydraulics in macroscopic soil water flow and land surface models.
Maurizio Santoro, Oliver Cartus, Nuno Carvalhais, Danaë M. A. Rozendaal, Valerio Avitabile, Arnan Araza, Sytze de Bruin, Martin Herold, Shaun Quegan, Pedro Rodríguez-Veiga, Heiko Balzter, João Carreiras, Dmitry Schepaschenko, Mikhail Korets, Masanobu Shimada, Takuya Itoh, Álvaro Moreno Martínez, Jura Cavlovic, Roberto Cazzolla Gatti, Polyanna da Conceição Bispo, Nasheta Dewnath, Nicolas Labrière, Jingjing Liang, Jeremy Lindsell, Edward T. A. Mitchard, Alexandra Morel, Ana Maria Pacheco Pascagaza, Casey M. Ryan, Ferry Slik, Gaia Vaglio Laurin, Hans Verbeeck, Arief Wijaya, and Simon Willcock
Earth Syst. Sci. Data, 13, 3927–3950, https://doi.org/10.5194/essd-13-3927-2021, https://doi.org/10.5194/essd-13-3927-2021, 2021
Short summary
Short summary
Forests play a crucial role in Earth’s carbon cycle. To understand the carbon cycle better, we generated a global dataset of forest above-ground biomass, i.e. carbon stocks, from satellite data of 2010. This dataset provides a comprehensive and detailed portrait of the distribution of carbon in forests, although for dense forests in the tropics values are somewhat underestimated. This dataset will have a considerable impact on climate, carbon, and socio-economic modelling schemes.
Paula Alejandra Lamprea Pineda, Marijn Bauters, Hans Verbeeck, Selene Baez, Matti Barthel, Samuel Bodé, and Pascal Boeckx
Biogeosciences, 18, 413–421, https://doi.org/10.5194/bg-18-413-2021, https://doi.org/10.5194/bg-18-413-2021, 2021
Short summary
Short summary
Tropical forest soils are an important source and sink of greenhouse gases (GHGs) with tropical montane forests having been poorly studied. In this pilot study, we explored soil fluxes of CO2, CH4, and N2O in an Ecuadorian neotropical montane forest, where a net consumption of N2O at higher altitudes was observed. Our results highlight the importance of short-term variations in N2O and provide arguments and insights for future, more detailed studies on GHG fluxes from montane forest soils.
Wim Verbruggen, Guy Schurgers, Stéphanie Horion, Jonas Ardö, Paulo N. Bernardino, Bernard Cappelaere, Jérôme Demarty, Rasmus Fensholt, Laurent Kergoat, Thomas Sibret, Torbern Tagesson, and Hans Verbeeck
Biogeosciences, 18, 77–93, https://doi.org/10.5194/bg-18-77-2021, https://doi.org/10.5194/bg-18-77-2021, 2021
Short summary
Short summary
A large part of Earth's land surface is covered by dryland ecosystems, which are subject to climate extremes that are projected to increase under future climate scenarios. By using a mathematical vegetation model, we studied the impact of single years of extreme rainfall on the vegetation in the Sahel. We found a contrasting response of grasses and trees to these extremes, strongly dependent on the way precipitation is spread over the rainy season, as well as a long-term impact on CO2 uptake.
Hannes P. T. De Deurwaerder, Marco D. Visser, Matteo Detto, Pascal Boeckx, Félicien Meunier, Kathrin Kuehnhammer, Ruth-Kristina Magh, John D. Marshall, Lixin Wang, Liangju Zhao, and Hans Verbeeck
Biogeosciences, 17, 4853–4870, https://doi.org/10.5194/bg-17-4853-2020, https://doi.org/10.5194/bg-17-4853-2020, 2020
Short summary
Short summary
The depths at which plants take up water is challenging to observe directly. To do so, scientists have relied on measuring the isotopic composition of xylem water as this provides information on the water’s source. Our work shows that this isotopic composition changes throughout the day, which complicates the interpretation of the water’s source and has been currently overlooked. We build a model to help understand the origin of these composition changes and their consequences for science.
Valentin Couvreur, Youri Rothfuss, Félicien Meunier, Thierry Bariac, Philippe Biron, Jean-Louis Durand, Patricia Richard, and Mathieu Javaux
Hydrol. Earth Syst. Sci., 24, 3057–3075, https://doi.org/10.5194/hess-24-3057-2020, https://doi.org/10.5194/hess-24-3057-2020, 2020
Short summary
Short summary
Isotopic labeling of soil water is a broadly used tool for tracing the origin of water extracted by plants and computing root water uptake (RWU) profiles with multisource mixing models. In this study, we show how a method such as this may misconstrue time series of xylem water isotopic composition as the temporal dynamics of RWU by simulating data collected during a tall fescue rhizotron experiment with an isotope-enabled physical soil–root model accounting for variability in root traits.
Anja Rammig, Jens Heinke, Florian Hofhansl, Hans Verbeeck, Timothy R. Baker, Bradley Christoffersen, Philippe Ciais, Hannes De Deurwaerder, Katrin Fleischer, David Galbraith, Matthieu Guimberteau, Andreas Huth, Michelle Johnson, Bart Krujit, Fanny Langerwisch, Patrick Meir, Phillip Papastefanou, Gilvan Sampaio, Kirsten Thonicke, Celso von Randow, Christian Zang, and Edna Rödig
Geosci. Model Dev., 11, 5203–5215, https://doi.org/10.5194/gmd-11-5203-2018, https://doi.org/10.5194/gmd-11-5203-2018, 2018
Short summary
Short summary
We propose a generic approach for a pixel-to-point comparison applicable for evaluation of models and remote-sensing products. We provide statistical measures accounting for the uncertainty in ecosystem variables. We demonstrate our approach by comparing simulated values of aboveground biomass, woody productivity and residence time of woody biomass from four dynamic global vegetation models (DGVMs) with measured inventory data from permanent plots in the Amazon rainforest.
Mehdi Rahmati, Lutz Weihermüller, Jan Vanderborght, Yakov A. Pachepsky, Lili Mao, Seyed Hamidreza Sadeghi, Niloofar Moosavi, Hossein Kheirfam, Carsten Montzka, Kris Van Looy, Brigitta Toth, Zeinab Hazbavi, Wafa Al Yamani, Ammar A. Albalasmeh, Ma'in Z. Alghzawi, Rafael Angulo-Jaramillo, Antônio Celso Dantas Antonino, George Arampatzis, Robson André Armindo, Hossein Asadi, Yazidhi Bamutaze, Jordi Batlle-Aguilar, Béatrice Béchet, Fabian Becker, Günter Blöschl, Klaus Bohne, Isabelle Braud, Clara Castellano, Artemi Cerdà, Maha Chalhoub, Rogerio Cichota, Milena Císlerová, Brent Clothier, Yves Coquet, Wim Cornelis, Corrado Corradini, Artur Paiva Coutinho, Muriel Bastista de Oliveira, José Ronaldo de Macedo, Matheus Fonseca Durães, Hojat Emami, Iraj Eskandari, Asghar Farajnia, Alessia Flammini, Nándor Fodor, Mamoun Gharaibeh, Mohamad Hossein Ghavimipanah, Teamrat A. Ghezzehei, Simone Giertz, Evangelos G. Hatzigiannakis, Rainer Horn, Juan José Jiménez, Diederik Jacques, Saskia Deborah Keesstra, Hamid Kelishadi, Mahboobeh Kiani-Harchegani, Mehdi Kouselou, Madan Kumar Jha, Laurent Lassabatere, Xiaoyan Li, Mark A. Liebig, Lubomír Lichner, María Victoria López, Deepesh Machiwal, Dirk Mallants, Micael Stolben Mallmann, Jean Dalmo de Oliveira Marques, Miles R. Marshall, Jan Mertens, Félicien Meunier, Mohammad Hossein Mohammadi, Binayak P. Mohanty, Mansonia Pulido-Moncada, Suzana Montenegro, Renato Morbidelli, David Moret-Fernández, Ali Akbar Moosavi, Mohammad Reza Mosaddeghi, Seyed Bahman Mousavi, Hasan Mozaffari, Kamal Nabiollahi, Mohammad Reza Neyshabouri, Marta Vasconcelos Ottoni, Theophilo Benedicto Ottoni Filho, Mohammad Reza Pahlavan-Rad, Andreas Panagopoulos, Stephan Peth, Pierre-Emmanuel Peyneau, Tommaso Picciafuoco, Jean Poesen, Manuel Pulido, Dalvan José Reinert, Sabine Reinsch, Meisam Rezaei, Francis Parry Roberts, David Robinson, Jesús Rodrigo-Comino, Otto Corrêa Rotunno Filho, Tadaomi Saito, Hideki Suganuma, Carla Saltalippi, Renáta Sándor, Brigitta Schütt, Manuel Seeger, Nasrollah Sepehrnia, Ehsan Sharifi Moghaddam, Manoj Shukla, Shiraki Shutaro, Ricardo Sorando, Ajayi Asishana Stanley, Peter Strauss, Zhongbo Su, Ruhollah Taghizadeh-Mehrjardi, Encarnación Taguas, Wenceslau Geraldes Teixeira, Ali Reza Vaezi, Mehdi Vafakhah, Tomas Vogel, Iris Vogeler, Jana Votrubova, Steffen Werner, Thierry Winarski, Deniz Yilmaz, Michael H. Young, Steffen Zacharias, Yijian Zeng, Ying Zhao, Hong Zhao, and Harry Vereecken
Earth Syst. Sci. Data, 10, 1237–1263, https://doi.org/10.5194/essd-10-1237-2018, https://doi.org/10.5194/essd-10-1237-2018, 2018
Short summary
Short summary
This paper presents and analyzes a global database of soil infiltration data, the SWIG database, for the first time. In total, 5023 infiltration curves were collected across all continents in the SWIG database. These data were either provided and quality checked by the scientists or they were digitized from published articles. We are convinced that the SWIG database will allow for a better parameterization of the infiltration process in land surface models and for testing infiltration models.
Sathyanarayan Rao, Félicien Meunier, Solomon Ehosioke, Nolwenn Lesparre, Andreas Kemna, Frédéric Nguyen, Sarah Garré, and Mathieu Javaux
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-280, https://doi.org/10.5194/bg-2018-280, 2018
Revised manuscript not accepted
Short summary
Short summary
This paper illustrates the impact of electrical property of maize root segments on the Electrical Resistivity Tomography (ERT) inversion results with the help of numerical model. The model includes explicit root representation in the finite element mesh with root growth, transpiration and root water uptake. We show that, ignoring root segments could lead to wrong estimation of water content using ERT method.
Félicien Meunier, Valentin Couvreur, Xavier Draye, Mohsen Zarebanadkouki, Jan Vanderborght, and Mathieu Javaux
Hydrol. Earth Syst. Sci., 21, 6519–6540, https://doi.org/10.5194/hess-21-6519-2017, https://doi.org/10.5194/hess-21-6519-2017, 2017
Short summary
Short summary
To maintain its yield, a plant needs to transpire water that it acquires from the soil. A deep understanding of the mechanisms that lead to water uptake location and intensity is required to correctly simulate the water transfer in the soil to the atmosphere. This work presents novel and general solutions of the water flow equation in roots with varying hydraulic properties that deeply affect the uptake pattern and the transpiration rate and can be used in ecohydrological models.
Marijn Bauters, Hans Verbeeck, Miro Demol, Stijn Bruneel, Cys Taveirne, Dries Van der Heyden, Landry Cizungu, and Pascal Boeckx
Biogeosciences, 14, 5313–5321, https://doi.org/10.5194/bg-14-5313-2017, https://doi.org/10.5194/bg-14-5313-2017, 2017
Short summary
Short summary
We assessed community-weighted functional canopy traits and indicative δ15N shifts along two new altitudinal transects in the tropical forest biome of both South America and Africa. We found that the functional forest composition and δ15N response along both transects was parallel, with a species shift towards more nitrogen-conservative species at higher elevations.
Matthieu Guimberteau, Philippe Ciais, Agnès Ducharne, Juan Pablo Boisier, Ana Paula Dutra Aguiar, Hester Biemans, Hannes De Deurwaerder, David Galbraith, Bart Kruijt, Fanny Langerwisch, German Poveda, Anja Rammig, Daniel Andres Rodriguez, Graciela Tejada, Kirsten Thonicke, Celso Von Randow, Rita C. S. Von Randow, Ke Zhang, and Hans Verbeeck
Hydrol. Earth Syst. Sci., 21, 1455–1475, https://doi.org/10.5194/hess-21-1455-2017, https://doi.org/10.5194/hess-21-1455-2017, 2017
E. Joetzjer, C. Delire, H. Douville, P. Ciais, B. Decharme, D. Carrer, H. Verbeeck, M. De Weirdt, and D. Bonal
Geosci. Model Dev., 8, 1709–1727, https://doi.org/10.5194/gmd-8-1709-2015, https://doi.org/10.5194/gmd-8-1709-2015, 2015
J. B. Fisher, M. Sikka, W. C. Oechel, D. N. Huntzinger, J. R. Melton, C. D. Koven, A. Ahlström, M. A. Arain, I. Baker, J. M. Chen, P. Ciais, C. Davidson, M. Dietze, B. El-Masri, D. Hayes, C. Huntingford, A. K. Jain, P. E. Levy, M. R. Lomas, B. Poulter, D. Price, A. K. Sahoo, K. Schaefer, H. Tian, E. Tomelleri, H. Verbeeck, N. Viovy, R. Wania, N. Zeng, and C. E. Miller
Biogeosciences, 11, 4271–4288, https://doi.org/10.5194/bg-11-4271-2014, https://doi.org/10.5194/bg-11-4271-2014, 2014
M. Guimberteau, A. Ducharne, P. Ciais, J. P. Boisier, S. Peng, M. De Weirdt, and H. Verbeeck
Geosci. Model Dev., 7, 1115–1136, https://doi.org/10.5194/gmd-7-1115-2014, https://doi.org/10.5194/gmd-7-1115-2014, 2014
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
Related subject area
Biogeosciences
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO and NH3 emissions from enhanced rock weathering with croplands
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES-HYDRO V1.0)
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)
Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA r7236) and evaluation at the Caxiuanã drought experiment
Matrix representation of lateral soil movements: scaling and calibrating CE-DYNAM (v2) at a continental level
CANOPS-GRB v1.0: a new Earth system model for simulating the evolution of ocean–atmosphere chemistry over geologic timescales
FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling
Impact of changes in climate and CO2 on the carbon storage potential of vegetation under limited water availability using SEIB-DGVM version 3.02
FORCCHN V2.0: an individual-based model for predicting multiscale forest carbon dynamics
Climate and parameter sensitivity and induced uncertainties in carbon stock projections for European forests (using LPJ-GUESS 4.0)
Use of genetic algorithms for ocean model parameter optimisation: a case study using PISCES-v2_RC for North Atlantic particulate organic carbon
SurEau-Ecos v2.0: a trait-based plant hydraulics model for simulations of plant water status and drought-induced mortality at the ecosystem level
Improved representation of plant physiology in the JULES-vn5.6 land surface model: photosynthesis, stomatal conductance and thermal acclimation
Representation of the phosphorus cycle in the Joint UK Land Environment Simulator (vn5.5_JULES-CNP)
CLM5-FruitTree: a new sub-model for deciduous fruit trees in the Community Land Model (CLM5)
The impact of hurricane disturbances on a tropical forest: implementing a palm plant functional type and hurricane disturbance module in ED2-HuDi V1.0
A validation standard for area of habitat maps for terrestrial birds and mammals
Soil Cycles of Elements simulator for Predicting TERrestrial regulation of greenhouse gases: SCEPTER v0.9
Using terrestrial laser scanning to constrain forest ecosystem structure and functions in the Ecosystem Demography model (ED2.2)
A map of global peatland extent created using machine learning (Peat-ML)
Implementation and evaluation of the unified stomatal optimization approach in the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
ECOSMO II(CHL): a marine biogeochemical model for the North Atlantic and the Arctic
Water Ecosystems Tool (WET) 1.0 – a new generation of flexible aquatic ecosystem model
Development of an open-source regional data assimilation system in PEcAn v. 1.7.2: application to carbon cycle reanalysis across the contiguous US using SIPNET
Predicting global terrestrial biomes with the LeNet convolutional neural network
KGML-ag: a modeling framework of knowledge-guided machine learning to simulate agroecosystems: a case study of estimating N2O emission using data from mesocosm experiments
Assessing methane emissions for northern peatlands in ORCHIDEE-PEAT revision 7020
A dynamic local-scale vegetation model for lycopsids (LYCOm v1.0)
Soil-related developments of the Biome-BGCMuSo v6.2 terrestrial ecosystem model
Global evaluation of the Ecosystem Demography model (ED v3.0)
A new snow module improves predictions of the isotope-enabled MAIDENiso forest growth model
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
Short summary
Short summary
This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
Short summary
Short summary
Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
Short summary
Short summary
Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
Short summary
Short summary
Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, and Yanxu Zhang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-89, https://doi.org/10.5194/gmd-2023-89, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical‐ecosystem ocean model (High-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
Short summary
Short summary
We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-66, https://doi.org/10.5194/gmd-2023-66, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
Short summary
Short summary
Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
Short summary
Short summary
Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
Short summary
Short summary
Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
Short summary
Short summary
Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla T. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-47, https://doi.org/10.5194/gmd-2023-47, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (eg, basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits from C sequestration. ERW could drive changes in the soil emissions of non-CO2 GHGs (N2O), and trace gases (NO & NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
EGUsphere, https://doi.org/10.5194/egusphere-2023-278, https://doi.org/10.5194/egusphere-2023-278, 2023
Short summary
Short summary
This paper introduces a plant hydrodynamic model for the DOE-sponsored dynamic vegetation model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest systems in particular, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We have identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
Short summary
Short summary
Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
Short summary
Short summary
Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
Short summary
Short summary
In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Jianghui Du
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-281, https://doi.org/10.5194/gmd-2022-281, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Trace elements and isotopes (TEIs) are important tools to study the changes of the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
Short summary
Short summary
There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
Short summary
Short summary
Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
Short summary
Short summary
We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
Short summary
Short summary
To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
Short summary
Short summary
Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
Short summary
Short summary
A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
Short summary
Short summary
The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
Short summary
Short summary
Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Jing Fang, Herman H. Shugart, Feng Liu, Xiaodong Yan, Yunkun Song, and Fucheng Lv
Geosci. Model Dev., 15, 6863–6872, https://doi.org/10.5194/gmd-15-6863-2022, https://doi.org/10.5194/gmd-15-6863-2022, 2022
Short summary
Short summary
Our study provided a detailed description and a package of an individual tree-based carbon model, FORCCHN2. This model used non-structural carbohydrate (NSC) pools to couple tree growth and phenology. The model could reproduce daily carbon fluxes across Northern Hemisphere forests. Given the potential importance of the application of this model, there is substantial scope for using FORCCHN2 in fields as diverse as forest ecology, climate change, and carbon estimation.
Johannes Oberpriller, Christine Herschlein, Peter Anthoni, Almut Arneth, Andreas Krause, Anja Rammig, Mats Lindeskog, Stefan Olin, and Florian Hartig
Geosci. Model Dev., 15, 6495–6519, https://doi.org/10.5194/gmd-15-6495-2022, https://doi.org/10.5194/gmd-15-6495-2022, 2022
Short summary
Short summary
Understanding uncertainties of projected ecosystem dynamics under environmental change is of immense value for research and climate change policy. Here, we analyzed these across European forests. We find that uncertainties are dominantly induced by parameters related to water, mortality, and climate, with an increasing importance of climate from north to south. These results highlight that climate not only contributes uncertainty but also modifies uncertainties in other ecosystem processes.
Marcus Falls, Raffaele Bernardello, Miguel Castrillo, Mario Acosta, Joan Llort, and Martí Galí
Geosci. Model Dev., 15, 5713–5737, https://doi.org/10.5194/gmd-15-5713-2022, https://doi.org/10.5194/gmd-15-5713-2022, 2022
Short summary
Short summary
This paper describes and tests a method which uses a genetic algorithm (GA), a type of optimisation algorithm, on an ocean biogeochemical model. The aim is to produce a set of numerical parameters that best reflect the observed data of particulate organic carbon in a specific region of the ocean. We show that the GA can provide optimised model parameters in a robust and efficient manner and can also help detect model limitations, ultimately leading to a reduction in the model uncertainties.
Julien Ruffault, François Pimont, Hervé Cochard, Jean-Luc Dupuy, and Nicolas Martin-StPaul
Geosci. Model Dev., 15, 5593–5626, https://doi.org/10.5194/gmd-15-5593-2022, https://doi.org/10.5194/gmd-15-5593-2022, 2022
Short summary
Short summary
A widespread increase in tree mortality has been observed around the globe, and this trend is likely to continue because of ongoing climate change. Here we present SurEau-Ecos, a trait-based plant hydraulic model to predict tree desiccation and mortality. SurEau-Ecos can help determine the areas and ecosystems that are most vulnerable to drying conditions.
Rebecca J. Oliver, Lina M. Mercado, Doug B. Clark, Chris Huntingford, Christopher M. Taylor, Pier Luigi Vidale, Patrick C. McGuire, Markus Todt, Sonja Folwell, Valiyaveetil Shamsudheen Semeena, and Belinda E. Medlyn
Geosci. Model Dev., 15, 5567–5592, https://doi.org/10.5194/gmd-15-5567-2022, https://doi.org/10.5194/gmd-15-5567-2022, 2022
Short summary
Short summary
We introduce new representations of plant physiological processes into a land surface model. Including new biological understanding improves modelled carbon and water fluxes for the present in tropical and northern-latitude forests. Future climate simulations demonstrate the sensitivity of photosynthesis to temperature is important for modelling carbon cycle dynamics in a warming world. Accurate representation of these processes in models is necessary for robust predictions of climate change.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
Short summary
Short summary
In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Olga Dombrowski, Cosimo Brogi, Harrie-Jan Hendricks Franssen, Damiano Zanotelli, and Heye Bogena
Geosci. Model Dev., 15, 5167–5193, https://doi.org/10.5194/gmd-15-5167-2022, https://doi.org/10.5194/gmd-15-5167-2022, 2022
Short summary
Short summary
Soil carbon storage and food production of fruit orchards will be influenced by climate change. However, they lack representation in models that study such processes. We developed and tested a new sub-model, CLM5-FruitTree, that describes growth, biomass distribution, and management practices in orchards. The model satisfactorily predicted yield and exchange of carbon, energy, and water in an apple orchard and can be used to study land surface processes in fruit orchards at different scales.
Jiaying Zhang, Rafael L. Bras, Marcos Longo, and Tamara Heartsill Scalley
Geosci. Model Dev., 15, 5107–5126, https://doi.org/10.5194/gmd-15-5107-2022, https://doi.org/10.5194/gmd-15-5107-2022, 2022
Short summary
Short summary
We implemented hurricane disturbance in a vegetation dynamics model and calibrated the model with observations of a tropical forest. We used the model to study forest recovery from hurricane disturbance and found that a single hurricane disturbance enhances AGB and BA in the long term compared with a no-hurricane situation. The model developed and results presented in this study can be utilized to understand the impact of hurricane disturbances on forest recovery under the changing climate.
Prabhat Raj Dahal, Maria Lumbierres, Stuart H. M. Butchart, Paul F. Donald, and Carlo Rondinini
Geosci. Model Dev., 15, 5093–5105, https://doi.org/10.5194/gmd-15-5093-2022, https://doi.org/10.5194/gmd-15-5093-2022, 2022
Short summary
Short summary
This paper describes the validation of area of habitat (AOH) maps produced for terrestrial birds and mammals. The main objective was to assess the accuracy of the maps based on independent data. We used open access data from repositories, such as ebird and gbif to check if our maps were a better reflection of species' distribution than random. When points were not available we used logistic models to validate the AOH maps. The majority of AOH maps were found to have a high accuracy.
Yoshiki Kanzaki, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 15, 4959–4990, https://doi.org/10.5194/gmd-15-4959-2022, https://doi.org/10.5194/gmd-15-4959-2022, 2022
Short summary
Short summary
Increasing carbon dioxide in the atmosphere is an urgent issue in the coming century. Enhanced rock weathering in soils can be one of the most efficient C capture strategies. On the basis as a weathering simulator, the newly developed SCEPTER model implements bio-mixing by fauna/humans and enables organic matter and crushed rocks/minerals at the soil surface with an option to track their particle size distributions. Those features can be useful for evaluating the carbon capture efficiency.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
Short summary
Short summary
We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Joe R. Melton, Ed Chan, Koreen Millard, Matthew Fortier, R. Scott Winton, Javier M. Martín-López, Hinsby Cadillo-Quiroz, Darren Kidd, and Louis V. Verchot
Geosci. Model Dev., 15, 4709–4738, https://doi.org/10.5194/gmd-15-4709-2022, https://doi.org/10.5194/gmd-15-4709-2022, 2022
Short summary
Short summary
Peat-ML is a high-resolution global peatland extent map generated using machine learning techniques. Peatlands are important in the global carbon and water cycles, but their extent is poorly known. We generated Peat-ML using drivers of peatland formation including climate, soil, geomorphology, and vegetation data, and we train the model with regional peatland maps. Our accuracy estimation approaches suggest Peat-ML is of similar or higher quality than other available peatland mapping products.
Qianyu Li, Shawn P. Serbin, Julien Lamour, Kenneth J. Davidson, Kim S. Ely, and Alistair Rogers
Geosci. Model Dev., 15, 4313–4329, https://doi.org/10.5194/gmd-15-4313-2022, https://doi.org/10.5194/gmd-15-4313-2022, 2022
Short summary
Short summary
Stomatal conductance is the rate of water release from leaves’ pores. We implemented an optimal stomatal conductance model in a vegetation model. We then tested and compared it with the existing empirical model in terms of model responses to key environmental variables. We also evaluated the model with measurements at a tropical forest site. Our study suggests that the parameterization of conductance models and current model response to drought are the critical areas for improving models.
Veli Çağlar Yumruktepe, Annette Samuelsen, and Ute Daewel
Geosci. Model Dev., 15, 3901–3921, https://doi.org/10.5194/gmd-15-3901-2022, https://doi.org/10.5194/gmd-15-3901-2022, 2022
Short summary
Short summary
We describe the coupled bio-physical model ECOSMO II(CHL), which is used for regional configurations for the North Atlantic and the Arctic hind-casting and operational purposes. The model is consistent with the large-scale climatological nutrient settings and is capable of representing regional and seasonal changes, and model primary production agrees with previous measurements. For the users of this model, this paper provides the underlying science, model evaluation and its development.
Nicolas Azaña Schnedler-Meyer, Tobias Kuhlmann Andersen, Fenjuan Rose Schmidt Hu, Karsten Bolding, Anders Nielsen, and Dennis Trolle
Geosci. Model Dev., 15, 3861–3878, https://doi.org/10.5194/gmd-15-3861-2022, https://doi.org/10.5194/gmd-15-3861-2022, 2022
Short summary
Short summary
We present the Water Ecosystems Tool (WET) – a new modular aquatic ecosystem model configurable to a wide array of physical setups, ecosystems and research questions based on the popular FABM–PCLake model. We aim for the model to become a community staple, thus helping to consolidate the state of the art under a few flexible models, with the aim of improving comparability across studies and preventing the
re-inventions of the wheelthat are common to our scientific modeling community.
Hamze Dokoohaki, Bailey D. Morrison, Ann Raiho, Shawn P. Serbin, Katie Zarada, Luke Dramko, and Michael Dietze
Geosci. Model Dev., 15, 3233–3252, https://doi.org/10.5194/gmd-15-3233-2022, https://doi.org/10.5194/gmd-15-3233-2022, 2022
Short summary
Short summary
We present a new terrestrial carbon cycle data assimilation system, built on the PEcAn model–data eco-informatics system, and its application for the development of a proof-of-concept carbon
reanalysisproduct that harmonizes carbon pools (leaf, wood, soil) and fluxes (GPP, Ra, Rh, NEE) across the contiguous United States from 1986–2019. Here, we build on a decade of work on uncertainty propagation to generate the most complete and robust uncertainty accounting available to date.
Hisashi Sato and Takeshi Ise
Geosci. Model Dev., 15, 3121–3132, https://doi.org/10.5194/gmd-15-3121-2022, https://doi.org/10.5194/gmd-15-3121-2022, 2022
Short summary
Short summary
Accurately predicting global coverage of terrestrial biome is one of the earliest ecological concerns, and many empirical schemes have been proposed to characterize their relationship. Here, we demonstrate an accurate and practical method to construct empirical models for operational biome mapping via a convolutional neural network (CNN) approach.
Licheng Liu, Shaoming Xu, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, Matthew D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar, and Zhenong Jin
Geosci. Model Dev., 15, 2839–2858, https://doi.org/10.5194/gmd-15-2839-2022, https://doi.org/10.5194/gmd-15-2839-2022, 2022
Short summary
Short summary
By incorporating the domain knowledge into a machine learning model, KGML-ag overcomes the well-known limitations of process-based models due to insufficient representations and constraints, and unlocks the “black box” of machine learning models. Therefore, KGML-ag can outperform existing approaches on capturing the hot moment and complex dynamics of N2O flux. This study will be a critical reference for the new generation of modeling paradigm for biogeochemistry and other geoscience processes.
Elodie Salmon, Fabrice Jégou, Bertrand Guenet, Line Jourdain, Chunjing Qiu, Vladislav Bastrikov, Christophe Guimbaud, Dan Zhu, Philippe Ciais, Philippe Peylin, Sébastien Gogo, Fatima Laggoun-Défarge, Mika Aurela, M. Syndonia Bret-Harte, Jiquan Chen, Bogdan H. Chojnicki, Housen Chu, Colin W. Edgar, Eugenie S. Euskirchen, Lawrence B. Flanagan, Krzysztof Fortuniak, David Holl, Janina Klatt, Olaf Kolle, Natalia Kowalska, Lars Kutzbach, Annalea Lohila, Lutz Merbold, Włodzimierz Pawlak, Torsten Sachs, and Klaudia Ziemblińska
Geosci. Model Dev., 15, 2813–2838, https://doi.org/10.5194/gmd-15-2813-2022, https://doi.org/10.5194/gmd-15-2813-2022, 2022
Short summary
Short summary
A methane model that features methane production and transport by plants, the ebullition process and diffusion in soil, oxidation to CO2, and CH4 fluxes to the atmosphere has been embedded in the ORCHIDEE-PEAT land surface model, which includes an explicit representation of northern peatlands. This model, ORCHIDEE-PCH4, was calibrated and evaluated on 14 peatland sites. Results show that the model is sensitive to temperature and substrate availability over the top 75 cm of soil depth.
Suman Halder, Susanne K. M. Arens, Kai Jensen, Tais W. Dahl, and Philipp Porada
Geosci. Model Dev., 15, 2325–2343, https://doi.org/10.5194/gmd-15-2325-2022, https://doi.org/10.5194/gmd-15-2325-2022, 2022
Short summary
Short summary
A dynamic vegetation model, designed to estimate potential impacts of early vascular vegetation, namely, lycopsids, on the biogeochemical cycle at a local scale. Lycopsid Model (LYCOm) estimates the productivity and physiological properties of lycopsids across a broad climatic range along with natural selection, which is then utilized to adjudge their weathering potential. It lays the foundation for estimation of their impacts during their long evolutionary history starting from the Ordovician.
Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
Short summary
Short summary
Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Lei Ma, George Hurtt, Lesley Ott, Ritvik Sahajpal, Justin Fisk, Rachel Lamb, Hao Tang, Steve Flanagan, Louise Chini, Abhishek Chatterjee, and Joseph Sullivan
Geosci. Model Dev., 15, 1971–1994, https://doi.org/10.5194/gmd-15-1971-2022, https://doi.org/10.5194/gmd-15-1971-2022, 2022
Short summary
Short summary
We present a global version of the Ecosystem Demography (ED) model which can track vegetation 3-D structure and scale up ecological processes from individual vegetation to ecosystem scale. Model evaluation against multiple benchmarking datasets demonstrated the model’s capability to simulate global vegetation dynamics across a range of temporal and spatial scales. With this version, ED has the potential to be linked with remote sensing observations to address key scientific questions.
Ignacio Hermoso de Mendoza, Etienne Boucher, Fabio Gennaretti, Aliénor Lavergne, Robert Field, and Laia Andreu-Hayles
Geosci. Model Dev., 15, 1931–1952, https://doi.org/10.5194/gmd-15-1931-2022, https://doi.org/10.5194/gmd-15-1931-2022, 2022
Short summary
Short summary
We modify the numerical model of forest growth MAIDENiso by explicitly simulating snow. This allows us to use the model in boreal environments, where snow is dominant. We tested the performance of the model before and after adding snow, using it at two Canadian sites to simulate tree-ring isotopes and comparing with local observations. We found that modelling snow improves significantly the simulation of the hydrological cycle, the plausibility of the model and the simulated isotopes.
Cited articles
Ahlström, A., Schurgers, G., Arneth, A., and Smith, B.: Robustness and uncertainty in terrestrial ecosystem carbon response to CMIP5 climate change projections, Environ. Res. Lett., 7, 044008, https://doi.org/10.1088/1748-9326/7/4/044008, 2012.
Aragão, L. E. O. C., Malhi, Y., Metcalfe, D. B., Silva-Espejo, J. E., Jiménez, E., Navarrete, D., Almeida, S., Costa, A. C. L., Salinas, N., Phillips, O. L., Anderson, L. O., Alvarez, E., Baker, T. R., Goncalvez, P. H., Huamán-Ovalle, J., Mamani-Solórzano, M., Meir, P., Monteagudo, A., Patiño, S., Peñuela, M. C., Prieto, A., Quesada, C. A., Rozas-Dávila, A., Rudas, A., Silva Jr., J. A., and Vásquez, R.: Above- and below-ground net primary productivity across ten Amazonian forests on contrasting soils, Biogeosciences, 6, 2759–2778, https://doi.org/10.5194/bg-6-2759-2009, 2009.
Avitabile, V., Herold, M., Heuvelink, G. B. M., Lewis, S. L., Phillips, O. L., Asner, G. P., Armston, J., Ashton, P. S., Banin, L., Bayol, N., Berry, N. J., Boeckx, P., de Jong, B. H. J., DeVries, B., Girardin, C. A. J., Kearsley, E., Lindsell, J. A., Lopez-Gonzalez, G., Lucas, R., Malhi, Y., Morel, A., Mitchard, E. T. A., Nagy, L., Qie, L., Quinones, M. J., Ryan, C. M., Ferry, S. J. W., Sunderland, T., Laurin, G. V., Gatti, R. C., Valentini, R., Verbeeck, H., Wijaya, A., and Willcock, S.: An integrated pan-tropical biomass map using multiple reference datasets, Glob. Change Biol., 22, 1406–1420, https://doi.org/10.1111/gcb.13139, 2016.
Baker, I. T., Prihodko, L., Denning, A. S., Goulden, M., Miller, S., and da Rocha, H. R.: Seasonal drought stress in the Amazon: Reconciling models and observations, J. Geophys. Res., 113, G00B01, https://doi.org/10.1029/2007JG000644, 2008.
Barros, A. H. C. and de Jong van Lier, Q.: Pedotransfer Functions for Brazilian Soils, in: Application of Soil Physics in Environmental Analyses: Measuring, Modelling and Data Integration, edited by: Teixeira, W. G., Ceddia, M. B., Ottoni, M. V., and Donnagema, G. K., Springer International Publishing, Cham, 131–162, https://doi.org/10.1007/978-3-319-06013-2_6, 2014.
Batjes, N. H.: A world dataset of derived soil properties by FAO–UNESCO soil unit for global modelling, Soil Use Manage., 13, 9–16, https://doi.org/10.1111/j.1475-2743.1997.tb00550.x, 1997.
Bonan, G. B.: Forests and Climate Change: Forcings, Feedbacks, and the Climate Benefits of Forests, Science, 320, 1444–1449, 2008.
Brooks, R. H. and Corey, A. T.: Hydraulic Properties of Porous Media, Hydrology Paper, Vol. 3, Colorado State University, Fort Collins, 1964.
Carminati, A. and Javaux, M.: Soil Rather Than Xylem Vulnerability Controls Stomatal Response to Drought, Trends Plant Sci., 25, 868–880, https://doi.org/10.1016/j.tplants.2020.04.003, 2020.
Carsel, R. F. and Parrish, R. S.: Developing joint probability distributions of soil water retention characteristics, Water Resour. Res., 24, 755–769, https://doi.org/10.1029/WR024i005p00755, 1988.
Christoffersen, B. O., Gloor, M., Fauset, S., Fyllas, N. M., Galbraith, D. R., Baker, T. R., Kruijt, B., Rowland, L., Fisher, R. A., Binks, O. J., Sevanto, S., Xu, C., Jansen, S., Choat, B., Mencuccini, M., McDowell, N. G., and Meir, P.: Linking hydraulic traits to tropical forest function in a size-structured and trait-driven model (TFS v.1-Hydro), Geosci. Model Dev., 9, 4227–4255, https://doi.org/10.5194/gmd-9-4227-2016, 2016.
Clapp, R. and Hornberger, G.: Empirical equations for some soil hydraulic properties, Water Resour. Res., 14, 601–604, https://doi.org/10.1029/WR014I004P00601, 1978.
Collier, N., Hoffman, F. M., Lawrence, D. M., Keppel-Aleks, G., Koven, C. D., Riley, W. J., Mu, M., and Randerson, J. T.: The International Land Model Benchmarking (ILAMB) System: Design, Theory, and Implementation, J. Adv. Model. Earth Sy., 10, 2731–2754, https://doi.org/10.1029/2018MS001354, 2018.
Combe, M., de Arellano, J. V.-G., Ouwersloot, H. G., and Peters, W.: Plant water-stress parameterization determines the strength of land–atmosphere coupling, Agr. Forest Meteorol., 217, 61–73, https://doi.org/10.1016/j.agrformet.2015.11.006, 2016.
Condit, R., Engelbrecht, B. M. J., Pino, D., Pérez, R., and Turner, B. L.: Species distributions in response to individual soil nutrients and seasonal drought across a community of tropical trees, P. Natl. Acad. Sci. USA, 110, 5064–5068, https://doi.org/10.1073/pnas.1218042110, 2013.
Corlett, R. T.: The Impacts of Droughts in Tropical Forests, Trends Plant Sci., 21, 584–593, https://doi.org/10.1016/j.tplants.2016.02.003, 2016.
Cosby, B. J., Hornberger, G. M., Clapp, R. B., and Ginn, T. R.: A Statistical Exploration of the Relationships of Soil Moisture Characteristics to the Physical Properties of Soils, Water Resour. Res., 20, 682–690, https://doi.org/10.1029/WR020i006p00682, 1984.
Darcy, H.: Les Fontaines Publiques de la Ville de Dijon: Exposition et Application des Principes a Suivre et des Formulesa Employer dans les Questions de Distribution d’Eau, edited by: Dalmont, V., Paris, 647 pp., ISBN 10 2012576001, ISBN 13 9782012576001,
1856.
De Deurwaerder, H. P. T., Visser, M. D., Meunier, F., Detto, M., Hervé-Fernández, P., Boeckx, P., and Verbeeck, H.: Robust Estimation of Absorbing Root Surface Distributions From Xylem Water Isotope Compositions With an Inverse Plant Hydraulic Model, Front. For. Glob. Change, 4, 76, https://doi.org/10.3389/ffgc.2021.689335, 2021.
de Rosnay, P., Polcher, J., Bruen, M., and Laval, K.: Impact of a physically based soil water flow and soil-plant interaction representation for modeling large-scale land surface processes, J. Geophys. Res.-Atmos., 107, 4118, https://doi.org/10.1029/2001JD000634, 2002.
d'Orgeval, T., Polcher, J., and de Rosnay, P.: Sensitivity of the West African hydrological cycle in ORCHIDEE to infiltration processes, Hydrol. Earth Syst. Sci., 12, 1387–1401, https://doi.org/10.5194/hess-12-1387-2008, 2008.
Doughty, C. E., Metcalfe, D. B., Girardin, C. A. J., Amézquita, F. F., Cabrera, D. G., Huasco, W. H., Silva-Espejo, J. E., Araujo-Murakami, A., da Costa, M. C., Rocha, W., Feldpausch, T. R., Mendoza, A. L. M., da Costa, A. C. L., Meir, P., Phillips, O. L., and Malhi, Y.: Drought impact on forest carbon dynamics and fluxes in Amazonia, Nature, 519, 78–82, https://doi.org/10.1038/nature14213, 2015.
Duffy, P. B., Brando, P., Asner, G. P., and Field, C. B.: Projections of future meteorological drought and wet periods in the Amazon, P. Natl. Acad. Sci. USA, 112, 13172–13177, https://doi.org/10.1073/pnas.1421010112, 2015.
Eleftheriadis, A., Lafuente, F., and Turrión, M.-B.: Effect of land use, time since deforestation and management on organic C and N in soil textural fractions, Soil Till. Res., 183, 1–7, https://doi.org/10.1016/j.still.2018.05.012, 2018.
Eyring, V., Bony, S., Meehl, G. A., Senior, C. A., Stevens, B., Stouffer, R. J., and Taylor, K. E.: Overview of the Coupled Model Intercomparison Project Phase 6 (CMIP6) experimental design and organization, Geosci. Model Dev., 9, 1937–1958, https://doi.org/10.5194/gmd-9-1937-2016, 2016.
Fan, Y., Miguez-Macho, G., Jobbágy, E. G., Jackson, R. B., and Otero-Casal, C.: Hydrologic regulation of plant rooting depth, P. Natl. Acad. Sci. USA, 114, 10572–10577, https://doi.org/10.1073/pnas.1712381114, 2017.
Fatichi, S., Or, D., Walko, R., Vereecken, H., Young, M. H., Ghezzehei, T. A., Hengl, T., Kollet, S., Agam, N., and Avissar, R.: Soil structure is an important omission in Earth System Models, Nat. Commun., 11, 522, https://doi.org/10.1038/s41467-020-14411-z, 2020.
Feldpausch, T. R., Phillips, O. L., Brienen, R. J. W., Gloor, E., Lloyd, J., Lopez-Gonzalez, G., Monteagudo-Mendoza, A., Malhi, Y., Alarcón, A., Álvarez Dávila, E., Alvarez-Loayza, P., Andrade, A., Aragao, L. E. O. C., Arroyo, L., Aymar C. G. A., Baker, T. R., Baraloto, C., Barroso, J., Bonal, D., Castro, W., Chama, V., Chave, J., Domingues, T. F., Fauset, S., Groot, N., Honorio Coronado, E., Laurance, S., Laurance, W. F., Lewis, S. L., Licona, J. C., Marimon, B. S., Marimon-Junior, B. H., Mendoza Bautista, C., Neill, D. A., Oliveira, E. A., Oliveira dos Santos, C., Pallqui Camacho, N. C., Pardo-Molina, G., Prieto, A., Quesada, C. A., Ramírez, F., Ramírez-Angulo, H., Réjou-Méchain, M., Rudas, A., Saiz, G., Salomão, R. P., Silva-Espejo, J. E., Silveira, M., ter Steege, H., Stropp, J., Terborgh, J., Thomas-Caesar, R., van der Heijden, G. M. F., Vásquez Martinez, R., Vilanova, E., and Vos, V. A.: Amazon forest response to repeated droughts, Global Biogeochem. Cy., 30, 964–982, https://doi.org/10.1002/2015GB005133, 2016.
Fisher, R. A. and Koven, C. D.: Perspectives on the Future of Land Surface Models and the Challenges of Representing Complex Terrestrial Systems, J. Adv. Model. Earth Sy., 12, e2018MS001453, https://doi.org/10.1029/2018MS001453, 2020.
Flack-Prain, S., Meir, P., Malhi, Y., Smallman, T. L., and Williams, M.: Does economic optimisation explain LAI and leaf trait distributions across an Amazon soil moisture gradient?, Glob. Change Biol., 27, 587–605, https://doi.org/10.1111/gcb.15368, 2021.
Franklin, O., Johansson, J., Dewar, R. C., Dieckmann, U., McMurtrie, R. E., Brännström, Å., and Dybzinski, R.: Modeling carbon allocation in trees: a search for principles, Tree Physiol., 32, 648–666, https://doi.org/10.1093/treephys/tpr138, 2012.
Fyllas, N. M., Patiño, S., Baker, T. R., Bielefeld Nardoto, G., Martinelli, L. A., Quesada, C. A., Paiva, R., Schwarz, M., Horna, V., Mercado, L. M., Santos, A., Arroyo, L., Jiménez, E. M., Luizão, F. J., Neill, D. A., Silva, N., Prieto, A., Rudas, A., Silviera, M., Vieira, I. C. G., Lopez-Gonzalez, G., Malhi, Y., Phillips, O. L., and Lloyd, J.: Basin-wide variations in foliar properties of Amazonian forest: phylogeny, soils and climate, Biogeosciences, 6, 2677–2708, https://doi.org/10.5194/bg-6-2677-2009, 2009.
Gatti, L. V., Gloor, M., Miller, J. B., Doughty, C. E., Malhi, Y., Domingues, L. G., Basso, L. S., Martinewski, A., Correia, C. S. C., Borges, V. F., Freitas, S., Braz, R., Anderson, L. O., Rocha, H., Grace, J., Phillips, O. L., and Lloyd, J.: Drought sensitivity of Amazonian carbon balance revealed by atmospheric measurements, Nature, 506, 76–80, https://doi.org/10.1038/nature12957, 2014.
Gerten, D., Schaphoff, S., Haberlandt, U., Lucht, W., and Sitch, S.: Terrestrial vegetation and water balance – hydrological evaluation of a dynamic global vegetation model, J. Hydrol., 286, 249–270, https://doi.org/10.1016/j.jhydrol.2003.09.029, 2004.
Green, J. K., Berry, J., Ciais, P., Zhang, Y., and Gentine, P.: Amazon rainforest photosynthesis increases in response to atmospheric dryness, Sci. Adv., 6, eabb7232, https://doi.org/10.1126/sciadv.abb7232, 2020.
Harris, P. P., Huntingford, C., Cox, P. M., Gash, J. H. C., and Malhi, Y.: Effect of soil moisture on canopy conductance of Amazonian rainforest, Agr. Forest Meteorol., 3–4, 215–227, https://doi.org/10.1016/j.agrformet.2003.09.006, 2004.
Hassink, J.: Effects of soil texture and structure on carbon and nitrogen mineralization in grassland soils, Biol. Fert. Soils, 14, 126–134, https://doi.org/10.1007/BF00336262, 1992.
Haxeltine, A. and Prentice, I. C.: A General Model for the Light-Use Efficiency of Primary Production, Funct. Ecol., 10, 551–561, https://doi.org/10.2307/2390165, 1996.
Hengl, T., de Jesus, J. M., Heuvelink, G. B. M., Gonzalez, M. R., Kilibarda, M., Blagotić, A., Shangguan, W., Wright, M. N., Geng, X., Bauer-Marschallinger, B., Guevara, M. A., Vargas, R., MacMillan, R. A., Batjes, N. H., Leenaars, J. G. B., Ribeiro, E., Wheeler, I., Mantel, S., and Kempen, B.: SoilGrids250m: Global gridded soil information based on machine learning, PLOS ONE, 12, e0169748, https://doi.org/10.1371/journal.pone.0169748, 2017.
Hodnett, M. and Tomasella, J.: Marked differences between van Genuchten soil water-retention parameters for temperate and tropical soils: A new water-retention pedo-transfer functions developed for tropical soils, Geoderma, 108, 155–180, https://doi.org/10.1016/S0016-7061(02)00105-2, 2002.
Jackson, R. B., Canadell, J., Ehleringer, J. R., Mooney, H. A., Sala, O. E., and Schulze, E. D.: A global analysis of root distributions for terrestrial biomes, Oecologia, 108, 389–411, https://doi.org/10.1007/BF00333714, 1996.
Jiménez, E. M., Peñuela-Mora, M. C., Sierra, C. A., Lloyd, J., Phillips, O. L., Moreno, F. H., Navarrete, D., Prieto, A., Rudas, A., Álvarez, E., Quesada, C. A., Grande-Ortíz, M. A., García-Abril, A., and Patiño, S.: Edaphic controls on ecosystem-level carbon allocation in two contrasting Amazon forests, J. Geophys. Res.-Biogeo., 119, 1820–1830, https://doi.org/10.1002/2014JG002653, 2014.
Jirka, S., McDonald, A. J., Johnson, M. S., Feldpausch, T. R., Couto, E. G., and Riha, S. J.: Relationships between soil hydrology and forest structure and composition in the southern Brazilian Amazon, J. Veg. Sci., 18, 183–194, https://doi.org/10.1111/j.1654-1103.2007.tb02529.x, 2007.
Joetzjer, E., Delire, C., Douville, H., Ciais, P., Decharme, B., Fisher, R., Christoffersen, B., Calvet, J. C., da Costa, A. C. L., Ferreira, L. V., and Meir, P.: Predicting the response of the Amazon rainforest to persistent drought conditions under current and future climates: a major challenge for global land surface models, Geosci. Model Dev., 7, 2933–2950, https://doi.org/10.5194/gmd-7-2933-2014, 2014.
Joetzjer, E., Maignan, F., Chave, J., Goll, D., Poulter, B., Barichivich, J., Maréchaux, I., Luyssaert, S., Guimberteau, M., Naudts, K., Bonal, D., and Ciais, P.: Effect of tree demography and flexible root water uptake for modeling the carbon and water cycles of Amazonia, Ecol. Model., 469, 109969, https://doi.org/10.1016/j.ecolmodel.2022.109969, 2022.
Johnson, M. O., Galbraith, D., Gloor, M., De Deurwaerder, H., Guimberteau, M., Rammig, A., Thonicke, K., Verbeeck, H., von Randow, C., Monteagudo, A., Phillips, O. L., Brienen, R. J. W., Feldpausch, T. R., Lopez Gonzalez, G., Fauset, S., Quesada, C. A., Christoffersen, B., Ciais, P., Sampaio, G., Kruijt, B., Meir, P., Moorcroft, P., Zhang, K., Alvarez-Davila, E., Alves de Oliveira, A., Amaral, I., Andrade, A., Aragao, L. E. O. C., Araujo-Murakami, A., Arets, E. J. M. M., Arroyo, L., Aymard, G. A., Baraloto, C., Barroso, J., Bonal, D., Boot, R., Camargo, J., Chave, J., Cogollo, A., Cornejo Valverde, F., Lola da Costa, A. C., Di Fiore, A., Ferreira, L., Higuchi, N., Honorio, E. N., Killeen, T. J., Laurance, S. G., Laurance, W. F., Licona, J., Lovejoy, T., Malhi, Y., Marimon, B., Marimon Junior, B. H., Matos, D. C. L., Mendoza, C., Neill, D. A., Pardo, G., Peña-Claros, M., Pitman, N. C. A., Poorter, L., Prieto, A., Ramirez-Angulo, H., Roopsind, A., Rudas, A., Salomao, R. P., Silveira, M., Stropp, J., ter Steege, H., Terborgh, J., Thomas, R., Toledo, M., Torres-Lezama, A., van der Heijden, G. M. F., Vasquez, R., Guimarães Vieira, I. C., Vilanova, E., Vos, V. A., and Baker, T. R.: Variation in stem mortality rates determines patterns of above-ground biomass in Amazonian forests: implications for dynamic global vegetation models, Glob. Change Biol., 22, 3996–4013, https://doi.org/10.1111/gcb.13315, 2016.
Kishné, A., Yimam, Y., Morgan, C., and Dornblaser, B.: Evaluation and improvement of the default soil hydraulic parameters for the Noah Land Surface Model, Geoderma, 285, 247–259, https://doi.org/10.1016/j.geoderma.2016.09.022, 2017.
Knox, R. G., Longo, M., Swann, A. L. S., Zhang, K., Levine, N. M., Moorcroft, P. R., and Bras, R. L.: Hydrometeorological effects of historical land-conversion in an ecosystem-atmosphere model of Northern South America, Hydrol. Earth Syst. Sci., 19, 241–273, https://doi.org/10.5194/hess-19-241-2015, 2015.
Krinner, G., Viovy, N., de Noblet-Ducoudré, N., Ogée, J., Polcher, J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice, I. C.: A dynamic global vegetation model for studies of the coupled atmosphere-biosphere system, Global Biogeochem. Cy., 19, GB1015, https://doi.org/10.1029/2003GB002199, 2005.
Laurance, W. F., Fearnside, P. M., Laurance, S. G., Delamonica, P., Lovejoy, T. E., Rankin-de Merona, J. M., Chambers, J. Q., and Gascon, C.: Relationship between soils and Amazon forest biomass: a landscape-scale study, Forest Ecol. Manag., 118, 127–138, https://doi.org/10.1016/S0378-1127(98)00494-0, 1999.
Li, L., Wang, Y.-P., Yu, Q., Pak, B., Eamus, D., Yan, J., van Gorsel, E., and Baker, I. T.: Improving the responses of the Australian community land surface model (CABLE) to seasonal drought: Improving CABLE in response to drought, J. Geophys. Res.-Biogeo., 117, G04002, https://doi.org/10.1029/2012JG002038, 2012.
Longo, M., Knox, R. G., Levine, N. M., Alves, L. F., Bonal, D., Camargo, P. B., Fitzjarrald, D. R., Hayek, M. N., Restrepo-Coupe, N., Saleska, S. R., da Silva, R., Stark, S. C., Tapajós, R. P., Wiedemann, K. T., Zhang, K., Wofsy, S. C., and Moorcroft, P. R.: Ecosystem heterogeneity and diversity mitigate Amazon forest resilience to frequent extreme droughts, New Phytol., 219, 914–931, https://doi.org/10.1111/nph.15185, 2018.
Longo, M., Knox, R. G., Medvigy, D. M., Levine, N. M., Dietze, M. C., Kim, Y., Swann, A. L. S., Zhang, K., Rollinson, C. R., Bras, R. L., Wofsy, S. C., and Moorcroft, P. R.: The biophysics, ecology, and biogeochemistry of functionally diverse, vertically and horizontally heterogeneous ecosystems: the Ecosystem Demography model, version 2.2 – Part 1: Model description, Geosci. Model Dev., 12, 4309–4346, https://doi.org/10.5194/gmd-12-4309-2019, 2019a.
Longo, M., Knox, R., Medvigy, D. M., Levine, N. M., Dietze, M.,
Swann, A. L. S., Zhang, K., Rollinson, C., di Porcia e Brugnera, M., Scott, D., Serbin, S. P., Kooper, R., Pourmokhtarian, A.,
Shiklomanov, A., Viskari, T., and Moorcroft, P.: Ecosystem Demography Model, version 2.2 (ED-2.2) (rev-86), Zenodo [code], https://doi.org/10.5281/zenodo.3365659, 2019b.
Lu, J., Zhang, Q., Werner, A. D., Li, Y., Jiang, S., and Tan, Z.: Root-induced changes of soil hydraulic properties – A review, J. Hydrol., 589, 125203, https://doi.org/10.1016/j.jhydrol.2020.125203, 2020.
Maeda, E. E., Kim, H., Aragão, L. E. O. C., Famiglietti, J. S., and Oki, T.: Disruption of hydroecological equilibrium in southwest Amazon mediated by drought, Geophys. Res. Lett., 42, 7546–7553, https://doi.org/10.1002/2015GL065252, 2015.
Medeiros, J. C., Cooper, M., Dalla Rosa, J., Grimaldi, M., and Coquet, Y.: Assessment of pedotransfer functions for estimating soil water retention curves for the amazon region, Rev. Bras. Cienc. Solo, 38, 730–743, https://doi.org/10.1590/S0100-06832014000300005, 2014.
Medvigy, D., Wofsy, S. C., Munger, J. W., Hollinger, D. Y., and Moorcroft, P. R.: Mechanistic scaling of ecosystem function and dynamics in space and time: Ecosystem Demography model version 2, J. Geophys. Res.-Biogeo., 114, G01002, https://doi.org/10.1029/2008JG000812, 2009.
Mencuccini, M., Manzoni, S., and Christoffersen, B.: Modelling water fluxes in plants: from tissues to biosphere, New Phytol., 222, 1207–1222, https://doi.org/10.1111/nph.15681, 2019.
Meunier, F.: Data for the publication “Low sensitivity of three terrestrial biosphere models to soil texture over the South-American tropics” (v1.0.0), Zenodo [data set], https://doi.org/10.5281/zenodo.6226622, 2022.
Moeys, J.: The soil texture wizard: R functions for plotting, classifying, transforming and exploring soil texture data, 104,
https://cran.r-project.org/web/packages/soiltexture/vignettes/soiltexture_vignette.pdf (last access: 11 October 2022), 2018.
Montzka, C., Herbst, M., Weihermüller, L., Verhoef, A., and Vereecken, H.: A global data set of soil hydraulic properties and sub-grid variability of soil water retention and hydraulic conductivity curves, Earth Syst. Sci. Data, 9, 529–543, https://doi.org/10.5194/essd-9-529-2017, 2017.
Mualem, Y.: A new model for predicting the hydraulic conductivity of unsaturated porous media, Water Resour. Res., 12, 513–522, https://doi.org/10.1029/WR012i003p00513, 1976.
Nachtergaele, F. O., van Velthuizen, H., Verelst, L., Batjes, N. H., Dijkshoorn, J. A., van Engelen, V. W. P., Fischer, G., Jones, A., Montanarella, L., Petri, M., Prieler, S., Teixeira, E., Wilberg, D., and Shi, X.: Harmonized World Soil Database (version 1.0), https://research.wur.nl/en/publications/harmonized-world-soil-database-version-10 (last access: 11 October 2022), 2008.
Negrón Juárez, R. I., Hodnett, M. G., Fu, R., Gouden, M. L., and von Randow, C.: Control of dry season evapotranspiration over the Amazonian forest as inferred from observation at a Southern Amazon forest site, J. Climate, 20, 2827–2839, https://doi.org/10.1175/JCLI4184.1, 2007.
Nepstad, D. C., de Carvalho, C. R., Davidson, E. A., Jipp, P. H., Lefebvre, P. A., Negreiros, G. H., da Silva, E. D., Stone, T. A., Trumbore, S. E., and Vieira, S.: The role of deep roots in the hydrological and carbon cycles of Amazonian forests and pastures, Nature, 372, 666–669, https://doi.org/10.1038/372666a0, 1994.
Nepstad, D. C., Tohver, I. M., Ray, D., Moutinho, P., and Cardinot, G.: Mortality of Large Trees and Lianas Following Experimental Drought in an Amazon Forest, Ecology, 88, 2259–2269, https://doi.org/10.1890/06-1046.1, 2007.
Oberpriller, J., Herschlein, C., Anthoni, P., Arneth, A., Krause, A., Rammig, A., Lindeskog, M., Olin, S., and Hartig, F.: Climate and parameter sensitivity and induced uncertainties in carbon stock projections for European forests (using LPJ-GUESS 4.0), Geosci. Model Dev., 15, 6495–6519, https://doi.org/10.5194/gmd-15-6495-2022, 2022.
O'Connell, C. S., Ruan, L., and Silver, W. L.: Drought drives rapid shifts in tropical rainforest soil biogeochemistry and greenhouse gas emissions, Nat. Commun., 9, 1348, https://doi.org/10.1038/s41467-018-03352-3, 2018.
ORCHIDEE in tags/ORCHIDEE_2_0 – ORCHIDEE: http://forge.ipsl.jussieu.fr/orchidee/browser/tags/ORCHIDEE_2_0/ORCHIDEE/, last access: 23 February 2022.
Patil, N. G. and Singh, S. K.: Pedotransfer Functions for Estimating Soil Hydraulic Properties: A Review, Pedosphere, 26, 417–430, https://doi.org/10.1016/S1002-0160(15)60054-6, 2016.
Peylin, P., Ghattas, J., Cadule, P., Cheruy, F., Ducharne, A., Guenet, B., Lathière, J., Luyssaert, S., Maignan, F., Maugis, P., Ottle, C., Polcher, J., Viovy, N., Vuichard, N., Bastrikov, V., Guimberteau, M., Lanso, A.-S., MacBean, N., Mcgrath, M., Tafasca, S., and Wang, F.: The global land surface model ORCHIDEE – Tag2.0, in preparation, 2022.
Phillips, O. L., Aragão, L. E. O. C., Lewis, S. L., Fisher, J. B., Lloyd, J., López-González, G., Malhi, Y., Monteagudo, A., Peacock, J., Quesada, C. A., van der Heijden, G., Almeida, S., Amaral, I., Arroyo, L., Aymard, G., Baker, T. R., Bánki, O., Blanc, L., Bonal, D., Brando, P., Chave, J., de Oliveira, Á. C. A., Cardozo, N. D., Czimczik, C. I., Feldpausch, T. R., Freitas, M. A., Gloor, E., Higuchi, N., Jiménez, E., Lloyd, G., Meir, P., Mendoza, C., Morel, A., Neill, D. A., Nepstad, D., Patiño, S., Peñuela, M. C., Prieto, A., Ramírez, F., Schwarz, M., Silva, J., Silveira, M., Thomas, A. S., ter Steege, H., Stropp, J., Vásquez, R., Zelazowski, P., Dávila, E. A., Andelman, S., Andrade, A., Chao, K.-J., Erwin, T., Di Fiore, A.,
Honorio, C. E., Keeling, H., Killeen, T. J., Laurance, W. F., Cruz, A. P., Pitman, N. C. A., Vargas, P. N., Ramírez-Angulo, H., Rudas, A., Salamão, R., Silva, N., Terborgh, J., and Torres-Lezama, A.: Drought Sensitivity of the Amazon Rainforest, Science, 323, 1344–1347, https://doi.org/10.1126/science.1164033, 2009.
Plante, A. F., Conant, R. T., Stewart, C. E., Paustian, K., and Six, J.: Impact of Soil Texture on the Distribution of Soil Organic Matter in Physical and Chemical Fractions, Soil Sci. Soc. Am. J., 70, 287–296, https://doi.org/10.2136/sssaj2004.0363, 2006.
Poggio, L., de Sousa, L. M., Batjes, N. H., Heuvelink, G. B. M., Kempen, B., Ribeiro, E., and Rossiter, D.: SoilGrids 2.0: producing soil information for the globe with quantified spatial uncertainty, SOIL, 7, 217–240, https://doi.org/10.5194/soil-7-217-2021, 2021.
Poulter, B., MacBean, N., Hartley, A., Khlystova, I., Arino, O., Betts, R., Bontemps, S., Boettcher, M., Brockmann, C., Defourny, P., Hagemann, S., Herold, M., Kirches, G., Lamarche, C., Lederer, D., Ottlé, C., Peters, M., and Peylin, P.: Plant functional type classification for earth system models: results from the European Space Agency's Land Cover Climate Change Initiative, Geosci. Model Dev., 8, 2315–2328, https://doi.org/10.5194/gmd-8-2315-2015, 2015.
Prentice, I. C., Cramer, W., Harrison, S. P., Leemans, R., Monserud, R. A., and Solomon, A. M.: A global biome model based on plant physiology and dominance, soil properties and climate, J. Biogeogr., 19, 117–134, 1992.
Prentice, I. C., Dong, N., Gleason, S. M., Maire, V., and Wright, I. J.: Balancing the costs of carbon gain and water transport: testing a new theoretical framework for plant functional ecology, Ecol. Lett., 17, 82–91, https://doi.org/10.1111/ele.12211, 2014.
Qu, W., Bogena, H. R., Huisman, J. A., Vanderborght, J., Schuh, M., Priesack, E., and Vereecken, H.: Predicting subgrid variability of soil water content from basic soil information, Geophys. Res. Lett., 42, 789–796, https://doi.org/10.1002/2014GL062496, 2015.
Richards, L. A.: Capillary conduction of liquids through porous mediums, Physics, 1, 318–333, https://doi.org/10.1063/1.1745010, 1931.
Rowland, L., da Costa, A. C. L., Galbraith, D. R., Oliveira, R. S., Binks, O. J., Oliveira, A. A. R., Pullen, A. M., Doughty, C. E., Metcalfe, D. B., Vasconcelos, S. S., Ferreira, L. V., Malhi, Y., Grace, J., Mencuccini, M., and Meir, P.: Death from drought in tropical forests is triggered by hydraulics not carbon starvation, Nature, 528, 119–122, https://doi.org/10.1038/nature15539, 2015.
Running, S., Mu, Q., and Zhao, M.: MOD17A2H MODIS/Terra Gross Primary Productivity 8-Day L4 Global 500m SIN Grid V006, NASA EOSDIS Land Processes DAAC [data set], https://doi.org/10.5067/MODIS/MOD17A2H.006, 2015.
Saleska, S. R., Miller, S. D., Matross, D. M., Goulden, M. L., Wofsy, S. C., da Rocha, H. R., de Camargo, P. B., Crill, P., Daube, B. C., de Freitas, H. C., Hutyra, L., Keller, M., Kirchhoff, V., Menton, M., Munger, J. W., Pyle, E. H., Rice, A. H., and Silva, H.: Carbon in Amazon forests: unexpected seasonal fluxes and disturbance-induced losses, Science, 302, 1554–1557, https://doi.org/10.1126/science.1091165, 2003.
Silver, W. L., Neff, J., McGroddy, M., Veldkamp, E., Keller, M., and Cosme, R.: Effects of Soil Texture on Belowground Carbon and Nutrient Storage in a Lowland Amazonian Forest Ecosystem, Ecosystems, 3, 193–209, https://doi.org/10.1007/s100210000019, 2000.
Sitch, S., Smith, B., Prentice, I. C., Arneth, A., Bondeau, A., Cramer, W., Kaplan, J. O., Levis, S., Lucht, W., Sykes, M. T., Thonicke, K., and Venevsky, S.: Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model, Glob. Change Biol., 9, 161–185, https://doi.org/10.1046/j.1365-2486.2003.00569.x, 2003.
Smith, B., Prentice, I. C., and Sykes, M. T.: Representation of vegetation dynamics in the modelling of terrestrial ecosystems: comparing two contrasting approaches within European climate space, Global Ecol. Biogeogr., 10, 621–637, https://doi.org/10.1046/j.1466-822X.2001.t01-1-00256.x, 2001.
Smith, B., Wårlind, D., Arneth, A., Hickler, T., Leadley, P., Siltberg, J., and Zaehle, S.: Implications of incorporating N cycling and N limitations on primary production in an individual-based dynamic vegetation model, Biogeosciences, 11, 2027–2054, https://doi.org/10.5194/bg-11-2027-2014, 2014.
Soil and Survey Manual: https://www.nrcs.usda.gov/wps/portal/nrcs/detailfull/soils/ref/?cid=nrcs142p2_054262 (last access: 22 February 2022), 2002.
SoilGrids web portal: https://soilgrids.org, last access: 11 October 2022.
Spinoni, J., Naumann, G., Carrao, H., Barbosa, P., and Vogt, J.: World drought frequency, duration, and severity for 1951–2010, Int. J. Climatol., 34, 2792–2804, https://doi.org/10.1002/joc.3875, 2014.
Staal, A., Flores, B. M., Aguiar, A. P. D., Bosmans, J. H. C., Fetzer, I., and Tuinenburg, O. A.: Feedback between drought and deforestation in the Amazon, Environ. Res. Lett., 10, 044024, https://doi.org/10.1088/1748-9326/ab738e, 2020.
Tafasca, S., Ducharne, A., and Valentin, C.: Weak sensitivity of the terrestrial water budget to global soil texture maps in the ORCHIDEE land surface model, Hydrol. Earth Syst. Sci., 24, 3753–3774, https://doi.org/10.5194/hess-24-3753-2020, 2020.
Telles, E. C. C., de Camargo, P. B., Martinelli, L. A., Trumbore, S. E., da Costa, E. S., Santos, J., Higuchi, N., and Oliveira Jr., R. C.: Influence of soil texture on carbon dynamics and storage potential in tropical forest soils of Amazonia, Global Biogeochem. Cy., 17, 1040, https://doi.org/10.1029/2002GB001953, 2003.
Uribe, M. R., Sierra, C. A., and Dukes, J. S.: Seasonality of Tropical Photosynthesis: A Pantropical Map of Correlations With Precipitation and Radiation and Comparison to Model Outputs, J. Geophys. Res.-Biogeo., 126, e2020JG006123, https://doi.org/10.1029/2020JG006123, 2021.
van den Hurk, B., Kim, H., Krinner, G., Seneviratne, S. I., Derksen, C., Oki, T., Douville, H., Colin, J., Ducharne, A., Cheruy, F., Viovy, N., Puma, M. J., Wada, Y., Li, W., Jia, B., Alessandri, A., Lawrence, D. M., Weedon, G. P., Ellis, R., Hagemann, S., Mao, J., Flanner, M. G., Zampieri, M., Materia, S., Law, R. M., and Sheffield, J.: LS3MIP (v1.0) contribution to CMIP6: the Land Surface, Snow and Soil moisture Model Intercomparison Project – aims, setup and expected outcome, Geosci. Model Dev., 9, 2809–2832, https://doi.org/10.5194/gmd-9-2809-2016, 2016.
van Genuchten, M. Th.: A Closed-form Equation for Predicting the Hydraulic Conductivity of Unsaturated Soils, Soil Sci. Soc. Am. J., 44, 892, https://doi.org/10.2136/sssaj1980.03615995004400050002x, 1980.
Van Looy, K., Bouma, J., Herbst, M., Koestel, J., Minasny, B., Mishra, U., Montzka, C., Nemes, A., Pachepsky, Y. A., Padarian, J., Schaap, M. G., Tóth, B., Verhoef, A., Vanderborght, J., van der Ploeg, M. J., Weihermüller, L., Zacharias, S., Zhang, Y., and Vereecken, H.: Pedotransfer Functions in Earth System Science: Challenges and Perspectives, Rev. Geophys., 55, 1199–1256, https://doi.org/10.1002/2017RG000581, 2017.
Vanderborght, J., Couvreur, V., Meunier, F., Schnepf, A., Vereecken, H., Bouda, M., and Javaux, M.: From hydraulic root architecture models to macroscopic representations of root hydraulics in soil water flow and land surface models, Hydrol. Earth Syst. Sci., 25, 4835–4860, https://doi.org/10.5194/hess-25-4835-2021, 2021.
Veldkamp, E., Schmidt, M., Powers, J. S., and Corre, M. D.: Deforestation and reforestation impacts on soils in the tropics, Nat. Rev. Earth Environ., 1, 590–605, https://doi.org/10.1038/s43017-020-0091-5, 2020.
Verbeeck, H., Peylin, P., Bacour, C., Bonal, D., Steppe, K., and Ciais, P.: Seasonal patterns of CO2 fluxes in Amazon forests: Fusion of eddy covariance data and the ORCHIDEE model, J. Geophys. Res., 116, G02018, https://doi.org/10.1029/2010jg001544, 2011.
Vereecken, H., Pachepsky, Y., Bogena, H., and Montzka, C.: Upscaling Issues in Ecohydrological Observations, in: Observation and Measurement of Ecohydrological Processes, edited by: Li, X. and Vereecken, H., Springer, Berlin, Heidelberg, 435–454, https://doi.org/10.1007/978-3-662-48297-1_14, 2019.
Viovy, N.: CRUNCEP Version 7 – Atmospheric Forcing Data for the Community Land Model, Research Data Archive at the National Center for Atmospheric Research, Computational and Information Systems Laboratory [data set], https://doi.org/10.5065/PZ8F-F017, 2018.
Walko, R. L., Band, L. E., Baron, J., Kittel, T. G. F., Lammers, R., Lee, T. J., Ojima, D., Pielke, R. A., Taylor, C., Tague, C., Tremback, C. J., and Vidale, P. L.: Coupled Atmosphere–Biophysics–Hydrology Models for Environmental Modeling, J. Appl. Meteorol., 39, 931–944, https://doi.org/10.1175/1520-0450(2000)039<0931:CABHMF>2.0.CO;2, 2000.
Xu, X., Medvigy, D., Powers, J. S., Becknell, J. M., and Guan, K.: Diversity in plant hydraulic traits explains seasonal and inter-annual variations of vegetation dynamics in seasonally dry tropical forests, New Phytol., 212, 80–95, https://doi.org/10.1111/nph.14009, 2016.
Yang, H., Ciais, P., Wigneron, J.-P., Chave, J., Cartus, O., Chen, X., Fan, L., Green, J. K., Huang, Y., Joetzjer, E., Kay, H., Makowski, D., Maignan, F., Santoro, M., Tao, S., Liu, L., and Yao, Y.: Climatic and biotic factors influencing regional declines and recovery of tropical forest biomass from the 2015/16 El Niño, P. Natl. Acad. Sci. USA, 119, e2101388119, https://doi.org/10.1073/pnas.2101388119, 2022.
Yao, Y., Joetzjer, E., Ciais, P., Viovy, N., Cresto Aleina, F., Chave, J., Sack, L., Bartlett, M., Meir, P., Fisher, R., and Luyssaert, S.: Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA, r7236) and evaluation at the Caxiuanã drought experiment, Geosci. Model Dev. Discuss. [preprint], https://doi.org/10.5194/gmd-2021-362, in review, 2021.
Zinn, Y. L., Lal, R., Bigham, J. M., and Resck, D. V. S.: Edaphic Controls on Soil Organic Carbon Retention in the Brazilian Cerrado: Texture and Mineralogy, Soil Sci. Soc. Am. J., 71, 1204–1214, https://doi.org/10.2136/sssaj2006.0014, 2007.
Short summary
Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the...
