Articles | Volume 13, issue 4
https://doi.org/10.5194/gmd-13-1865-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-1865-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
09 Apr 2020
Model description paper |
| 09 Apr 2020
| 09 Apr 2020
BPOP-v1 model: exploring the impact of changes in the biological pump on the shelf sea and ocean nutrient and redox state
Global Systems Institute, University of Exeter, Exeter, EX4 4QE,
UK
Timothy M. Lenton
Global Systems Institute, University of Exeter, Exeter, EX4 4QE,
UK
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Giulia Bonino, Elisa Lovecchio, Nicolas Gruber, Matthias Münnich, Simona Masina, and Doroteaciro Iovino
Biogeosciences, 18, 2429–2448, https://doi.org/10.5194/bg-18-2429-2021, https://doi.org/10.5194/bg-18-2429-2021, 2021
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Seasonal variations of processes such as upwelling and biological production that happen along the northwestern African coast can modulate the temporal variability of the biological activity of the adjacent open North Atlantic hundreds of kilometers away from the coast thanks to the lateral transport of coastal organic carbon. This happens with a temporal delay, which is smaller than a season up to roughly 500 km from the coast due to the intense transport by small-scale filaments.
Elisa Lovecchio, Nicolas Gruber, and Matthias Münnich
Biogeosciences, 15, 5061–5091, https://doi.org/10.5194/bg-15-5061-2018, https://doi.org/10.5194/bg-15-5061-2018, 2018
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We find that the ocean's flow on scales of a few tens to a few hundred km has a central role in the lateral redistribution of the organic carbon from the coast to the open ocean. Narrow coastal filaments drive the offshore flux of organic carbon and strongly enhance its availability up to 1000 km from the coast. Eddies extend the flux up to 2000 km offshore containing 30 % of the organic matter in the open waters. Resolving these scales is essential to capture the coastal/open ocean coupling.
Elisa Lovecchio, Nicolas Gruber, Matthias Münnich, and Zouhair Lachkar
Biogeosciences, 14, 3337–3369, https://doi.org/10.5194/bg-14-3337-2017, https://doi.org/10.5194/bg-14-3337-2017, 2017
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We find that a big portion of the phytoplankton, zooplankton, and detrital organic matter produced near the northern African coast is laterally transported towards the open North Atlantic. This offshore flux sustains a relevant part of the biological activity in the open sea and reaches as far as the middle of the North Atlantic. Our results, obtained with a state-of-the-art model, highlight the fundamental role of the narrow but productive coastal ocean in sustaining global marine life.
Chris A. Boulton, Joshua E. Buxton, and Timothy M. Lenton
Earth Syst. Dynam., 16, 411–421, https://doi.org/10.5194/esd-16-411-2025, https://doi.org/10.5194/esd-16-411-2025, 2025
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Early warning signals used to detect tipping points are tested on a dataset of daily views of online electric vehicle (EV) adverts. The attention given to EV adverts spikes upwards after specific events before returning to normality more slowly over time. Alongside increases in autocorrelation and variance, these results are consistent with the movement towards a tipping point to an EV-dominated market, highlighting the ability of these signals to work in previously untested social systems.
Mark S. Williamson and Timothy M. Lenton
Earth Syst. Dynam., 15, 1483–1508, https://doi.org/10.5194/esd-15-1483-2024, https://doi.org/10.5194/esd-15-1483-2024, 2024
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Climate models have transitioned to a superrotating atmospheric state under a broad range of warm climates. Such a transition would change global weather patterns should it occur. Here we simulate this transition using an idealized climate model and look for any early warnings of the superrotating state before it happens. We find several early warning indicators that we attribute to an oscillating pattern in the windfield fluctuations.
Sibel Eker, Timothy M. Lenton, Tom Powell, Jürgen Scheffran, Steven R. Smith, Deepthi Swamy, and Caroline Zimm
Earth Syst. Dynam., 15, 789–800, https://doi.org/10.5194/esd-15-789-2024, https://doi.org/10.5194/esd-15-789-2024, 2024
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Cascading effects through cross-system interactions are one of the biggest promises of positive tipping points to create rapid climate and sustainability action. Here, we review these in terms of their interactions with sociotechnical systems such as energy, transport, agriculture, society, and policy.
Antony Philip Emenyu, Thomas Pienkowski, Andrew M. Cunliffe, Timothy M. Lenton, and Tom Powell
EGUsphere, https://doi.org/10.5194/egusphere-2023-2531, https://doi.org/10.5194/egusphere-2023-2531, 2023
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This paper explores what processes could boost adoption rates for regenerative agriculture programs in Africa and draws on insights from successful rapid scaling of TIST in east Africa. Found that the cultivation of reinforcing feedback processes that strengthened the social capital around adoption and elimination of barriers to carbon accreditation for RA projects to be key success factors and possible opportunities new and ongoing RA programs to boost their adoption rates.
Stephen P. Hesselbo, Aisha Al-Suwaidi, Sarah J. Baker, Giorgia Ballabio, Claire M. Belcher, Andrew Bond, Ian Boomer, Remco Bos, Christian J. Bjerrum, Kara Bogus, Richard Boyle, James V. Browning, Alan R. Butcher, Daniel J. Condon, Philip Copestake, Stuart Daines, Christopher Dalby, Magret Damaschke, Susana E. Damborenea, Jean-Francois Deconinck, Alexander J. Dickson, Isabel M. Fendley, Calum P. Fox, Angela Fraguas, Joost Frieling, Thomas A. Gibson, Tianchen He, Kat Hickey, Linda A. Hinnov, Teuntje P. Hollaar, Chunju Huang, Alexander J. L. Hudson, Hugh C. Jenkyns, Erdem Idiz, Mengjie Jiang, Wout Krijgsman, Christoph Korte, Melanie J. Leng, Timothy M. Lenton, Katharina Leu, Crispin T. S. Little, Conall MacNiocaill, Miguel O. Manceñido, Tamsin A. Mather, Emanuela Mattioli, Kenneth G. Miller, Robert J. Newton, Kevin N. Page, József Pálfy, Gregory Pieńkowski, Richard J. Porter, Simon W. Poulton, Alberto C. Riccardi, James B. Riding, Ailsa Roper, Micha Ruhl, Ricardo L. Silva, Marisa S. Storm, Guillaume Suan, Dominika Szűcs, Nicolas Thibault, Alfred Uchman, James N. Stanley, Clemens V. Ullmann, Bas van de Schootbrugge, Madeleine L. Vickers, Sonja Wadas, Jessica H. Whiteside, Paul B. Wignall, Thomas Wonik, Weimu Xu, Christian Zeeden, and Ke Zhao
Sci. Dril., 32, 1–25, https://doi.org/10.5194/sd-32-1-2023, https://doi.org/10.5194/sd-32-1-2023, 2023
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We present initial results from a 650 m long core of Late Triasssic to Early Jurassic (190–202 Myr) sedimentary strata from the Cheshire Basin, UK, which is shown to be an exceptional record of Earth evolution for the time of break-up of the supercontinent Pangaea. Further work will determine periodic changes in depositional environments caused by solar system dynamics and used to reconstruct orbital history.
Mila Kim-Chau Fiona Ong, Fenna Blomsma, and Timothy Michael Lenton
EGUsphere, https://doi.org/10.5194/egusphere-2023-2361, https://doi.org/10.5194/egusphere-2023-2361, 2023
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We investigate the initially successful transition from regional bottle reuse for mineral water to a widespread bottle reuse system in Germany, its subsequent destabilisation, and what this teaches us about tipping dynamics in packaging systems. Our findings demonstrate opportunities to create an enabling environment for change, and the role of specific reinforcing feedback loops and interventions in accelerating or impeding sustainable transitions.
Jakob Emanuel Deutloff, Hermann Held, and Timothy Michael Lenton
EGUsphere, https://doi.org/10.5194/egusphere-2023-1469, https://doi.org/10.5194/egusphere-2023-1469, 2023
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We investigate the probabilities of triggering climate tipping points under various emission scenarios and how they are altered by additional carbon emissions from tipping points within the Earth's carbon cycle. We find that even “middle of the road” emission scenarios are highly unsafe with regard to triggering climate tipping points. Under such scenarios, probabilities of triggering are increased substantially by carbon emissions from tipping points within the Earth's carbon cycle.
Taylor Smith, Ruxandra-Maria Zotta, Chris A. Boulton, Timothy M. Lenton, Wouter Dorigo, and Niklas Boers
Earth Syst. Dynam., 14, 173–183, https://doi.org/10.5194/esd-14-173-2023, https://doi.org/10.5194/esd-14-173-2023, 2023
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Multi-instrument records with varying signal-to-noise ratios are becoming increasingly common as legacy sensors are upgraded, and data sets are modernized. Induced changes in higher-order statistics such as the autocorrelation and variance are not always well captured by cross-calibration schemes. Here we investigate using synthetic examples how strong resulting biases can be and how they can be avoided in order to make reliable statements about changes in the resilience of a system.
Thomas S. Ball, Naomi E. Vaughan, Thomas W. Powell, Andrew Lovett, and Timothy M. Lenton
Geosci. Model Dev., 15, 929–949, https://doi.org/10.5194/gmd-15-929-2022, https://doi.org/10.5194/gmd-15-929-2022, 2022
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C-LLAMA is a simple model of the global food system operating at a country level from 2013 to 2050. The model begins with projections of diet composition and populations for each country, producing a demand for each food commodity and finally an agricultural land use in each country. The model can be used to explore the sensitivity of agricultural land use to various drivers within the food system at country, regional, and continental spatial aggregations.
Giulia Bonino, Elisa Lovecchio, Nicolas Gruber, Matthias Münnich, Simona Masina, and Doroteaciro Iovino
Biogeosciences, 18, 2429–2448, https://doi.org/10.5194/bg-18-2429-2021, https://doi.org/10.5194/bg-18-2429-2021, 2021
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Seasonal variations of processes such as upwelling and biological production that happen along the northwestern African coast can modulate the temporal variability of the biological activity of the adjacent open North Atlantic hundreds of kilometers away from the coast thanks to the lateral transport of coastal organic carbon. This happens with a temporal delay, which is smaller than a season up to roughly 500 km from the coast due to the intense transport by small-scale filaments.
Emma W. Littleton, Anna B. Harper, Naomi E. Vaughan, Rebecca J. Oliver, Maria Carolina Duran-Rojas, and Timothy M. Lenton
Geosci. Model Dev., 13, 1123–1136, https://doi.org/10.5194/gmd-13-1123-2020, https://doi.org/10.5194/gmd-13-1123-2020, 2020
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This study presents new functionality to represent bioenergy crops and harvests in JULES, a land surface model. Such processes must be explicitly represented before the environmental effects of large-scale bioenergy production can be fully evaluated, using Earth system modelling. This new functionality allows for many types of bioenergy plants and harvesting regimes to be simulated, such as perennial grasses, short rotation coppicing, and forestry rotations.
David I. Armstrong McKay and Timothy M. Lenton
Clim. Past, 14, 1515–1527, https://doi.org/10.5194/cp-14-1515-2018, https://doi.org/10.5194/cp-14-1515-2018, 2018
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This study uses statistical analyses to look for signs of declining resilience (i.e. greater sensitivity to small shocks) in the global carbon cycle and climate system across the Palaeocene–Eocene Thermal Maximum (PETM), a global warming event 56 Myr ago driven by rapid carbon release. Our main finding is that carbon cycle resilience declined in the 1.5 Myr beforehand (a time of significant volcanic emissions), which is consistent with but not proof of a carbon release tipping point at the PETM.
Elisa Lovecchio, Nicolas Gruber, and Matthias Münnich
Biogeosciences, 15, 5061–5091, https://doi.org/10.5194/bg-15-5061-2018, https://doi.org/10.5194/bg-15-5061-2018, 2018
Short summary
Short summary
We find that the ocean's flow on scales of a few tens to a few hundred km has a central role in the lateral redistribution of the organic carbon from the coast to the open ocean. Narrow coastal filaments drive the offshore flux of organic carbon and strongly enhance its availability up to 1000 km from the coast. Eddies extend the flux up to 2000 km offshore containing 30 % of the organic matter in the open waters. Resolving these scales is essential to capture the coastal/open ocean coupling.
Elisa Lovecchio, Nicolas Gruber, Matthias Münnich, and Zouhair Lachkar
Biogeosciences, 14, 3337–3369, https://doi.org/10.5194/bg-14-3337-2017, https://doi.org/10.5194/bg-14-3337-2017, 2017
Short summary
Short summary
We find that a big portion of the phytoplankton, zooplankton, and detrital organic matter produced near the northern African coast is laterally transported towards the open North Atlantic. This offshore flux sustains a relevant part of the biological activity in the open sea and reaches as far as the middle of the North Atlantic. Our results, obtained with a state-of-the-art model, highlight the fundamental role of the narrow but productive coastal ocean in sustaining global marine life.
Sebastian Bathiany, Bregje van der Bolt, Mark S. Williamson, Timothy M. Lenton, Marten Scheffer, Egbert H. van Nes, and Dirk Notz
The Cryosphere, 10, 1631–1645, https://doi.org/10.5194/tc-10-1631-2016, https://doi.org/10.5194/tc-10-1631-2016, 2016
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We examine if a potential "tipping point" in Arctic sea ice, causing abrupt and irreversible sea-ice loss, could be foreseen with statistical early warning signals. We assess this idea by using several models of different complexity. We find robust and consistent trends in variability that are not specific to the existence of a tipping point. While this makes an early warning impossible, it allows to estimate sea-ice variability from only short observational records or reconstructions.
Timothy M. Lenton, Peter-Paul Pichler, and Helga Weisz
Earth Syst. Dynam., 7, 353–370, https://doi.org/10.5194/esd-7-353-2016, https://doi.org/10.5194/esd-7-353-2016, 2016
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We identify six past revolutions in energy input and material cycling in Earth and human history. We find that human energy use has now reached a magnitude comparable to the biosphere, and conclude that a prospective sustainability revolution will require scaling up new solar energy technologies and the development of much more efficient material recycling systems. Our work was inspired by recognising the connections between Earth system science and industrial ecology at the "LOOPS" workshop.
Mark S. Williamson, Sebastian Bathiany, and Timothy M. Lenton
Earth Syst. Dynam., 7, 313–326, https://doi.org/10.5194/esd-7-313-2016, https://doi.org/10.5194/esd-7-313-2016, 2016
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We find early warnings of abrupt changes in complex dynamical systems such as the climate where the usual early warning indicators do not work. In particular, these are systems that are periodically forced, for example by the annual cycle of solar insolation. We show these indicators are good theoretically in a general setting then apply them to a specific system, that of the Arctic sea ice, which has been conjectured to be close to such a tipping point. We do not find evidence of it.
Z. A. Thomas, F. Kwasniok, C. A. Boulton, P. M. Cox, R. T. Jones, T. M. Lenton, and C. S. M. Turney
Clim. Past, 11, 1621–1633, https://doi.org/10.5194/cp-11-1621-2015, https://doi.org/10.5194/cp-11-1621-2015, 2015
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Using a combination of speleothem records and model simulations of the East Asian Monsoon over the penultimate glacial cycle, we search for early warning signals of past tipping points. We detect a characteristic slower response to perturbations prior to an abrupt monsoon shift at the glacial termination; however, we do not detect these signals in the preceding shifts. Our results have important implications for detecting tipping points in palaeoclimate records outside glacial terminations.
G. Colbourn, A. Ridgwell, and T. M. Lenton
Geosci. Model Dev., 6, 1543–1573, https://doi.org/10.5194/gmd-6-1543-2013, https://doi.org/10.5194/gmd-6-1543-2013, 2013
V. N. Livina and T. M. Lenton
The Cryosphere, 7, 275–286, https://doi.org/10.5194/tc-7-275-2013, https://doi.org/10.5194/tc-7-275-2013, 2013
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-223, https://doi.org/10.5194/gmd-2024-223, 2024
Revised manuscript accepted for GMD
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions have changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Hoa T. T. Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2024-2710, https://doi.org/10.5194/egusphere-2024-2710, 2024
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Parameterisation is key in modeling to reproduce observations well but is often done manually. This study presents a Particle Swarm Optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, thus providing different insights into ecosystem dynamics, (2) optimized model complexity.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-170, https://doi.org/10.5194/gmd-2024-170, 2024
Revised manuscript accepted for GMD
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Wildfires release large amounts of greenhouse gases, contributing to global warming. We developed a new model that provides near-real-time estimates of wildfire emissions in China. Our model improves the accuracy of burned area measurements and incorporates advanced data in fuel loads and emission factors. We found that most emissions come from agricultural fires, while emissions from forests and grasslands are decreasing. This model will help reduce the environmental impacts of wildfires.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
EGUsphere, https://doi.org/10.5194/egusphere-2024-2044, https://doi.org/10.5194/egusphere-2024-2044, 2024
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We use an innovative approach to study the Earth's water cycle by blending advanced computer learning techniques with a traditional water cycle model. We developed a model that learns from meteorological data, with a special focus on understanding how vegetation influences water movement. Our model closely aligns with real-world observations, yet there are areas that need improvement. This study opens up new possibilities to better understand the water cycle and its interactions with vegetation.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
EGUsphere, https://doi.org/10.5194/egusphere-2024-2592, https://doi.org/10.5194/egusphere-2024-2592, 2024
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they’ve changed from 1901 to 2018. We found that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation has increased, especially in the tropics, while N limitation has decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Sergi Molins, Benjamin Andre, Jeffrey Johnson, Glenn Hammond, Benjamin Sulman, Konstantin Lipnikov, Marcus Day, James Beisman, Daniil Svyatsky, Hang Deng, Peter Lichtner, Carl Steefel, and David Moulton
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-108, https://doi.org/10.5194/gmd-2024-108, 2024
Revised manuscript accepted for GMD
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
EGUsphere, https://doi.org/10.5194/egusphere-2024-1914, https://doi.org/10.5194/egusphere-2024-1914, 2024
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Under climate change, the conditions for wildfires to form are becoming more frequent in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a crucial platform for future developments.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, Luke Smallmann, Susan Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zähle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek El-Madany, Mirco Migliavacca, Marika Honkanen, Yann Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaetan Pique, Amanda Ojasalo, Shaun Quegan, Peter Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
EGUsphere, https://doi.org/10.5194/egusphere-2024-1534, https://doi.org/10.5194/egusphere-2024-1534, 2024
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When it comes to climate change, the land surfaces are where the vast majority of impacts happen. The task of monitoring those across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us see what changes on our lands.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
EGUsphere, https://doi.org/10.5194/egusphere-2024-1542, https://doi.org/10.5194/egusphere-2024-1542, 2024
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical process-based model developed to represent the global SIF observed by GOSAT. Our model simulation reproduced the global distribution and seasonal variations of GOSAT SIF. The model can be utilized to improve photosynthetic process through the combination of biogeochemical modeling and GOSAT SIF.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-53, https://doi.org/10.5194/gmd-2024-53, 2024
Revised manuscript accepted for GMD
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We describe and test the size-based NUM model, that define organisms by a single set of parameters, on planktonic unicellular ecosystems in a eutrophic and an oligotrophic site. Results show both sites can be modelled with similar parameters, and a robust performance over a wide range of parameters. The study show that the NUM model is useful for non-experts and applicable for modelling domains with limited ecosystem data. It holds promise for evolutionary scenarios and deep-time climate models.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1360, https://doi.org/10.5194/egusphere-2024-1360, 2024
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, crucial for understanding their role in the global carbon cycle. By analyzing over 22,000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate the top 10 cm of ocean sediments hold about 171 petagrams of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Cited articles
Acevedo-Trejos, E., Brandt, G., Steinacher, M., and Merico, A.: A glimpse
into the future composition of marine phytoplankton communities, Front.
Marine Sci., 1, 15 pp., https://doi.org/10.3389/fmars.2014.00015, 2014.
Alonso-González, I. J., Arístegui, J., Lee, C., Sanchez-Vidal, A.,
Calafat, A., Fabrés, J., Sangrá, P., Masqué, P.,
Hernández-Guerra, A., and Benítez-Barrios, V.: Role of slowly
settling particles in the ocean carbon cycle, Geophys. Res. Lett.,
37, L13608, https://doi.org/10.1029/2010GL043827, 2010.
Anderson, L. A. and Sarmiento, J. L.: Redfield ratios of remineralization
determined by nutrient data analysis, Global Biogeochem. Cy., 8,
65–80, https://doi.org/10.1029/93gb03318, 1994.
Baker, C. A., Henson, S. A., Cavan, E. L., Giering, S. L., Yool, A., Gehlen, M., Belcher, A., Riley, J. S., Smith, H. E., and Sanders, R.: Slow-sinking
particulate organic carbon in the Atlantic Ocean: Magnitude, flux, and
potential controls, Global Biogeochem. Cy., 31, 1051–1065, 2017.
Barrón, C. and Duarte, C. M.: Dissolved organic carbon pools and export
from the coastal ocean, Global Biogeochem. Cy., 29, 1725–1738,
https://doi.org/10.1002/2014gb005056, 2015.
Barton, A. D., Pershing, A. J., Litchman, E., Record, N. R., Edwards, K. F.,
Finkel, Z. V., Kiørboe, T., and Ward, B. A.: The biogeography of marine
plankton traits, Ecol. Lett., 16, 522–534, https://doi.org/10.1111/ele.12063, 2013.
Boyd, P. and Trull, T.: Understanding the export of biogenic particles in
oceanic waters: is there consensus?, Prog. Oceanogr., 72, 276–312,
2007.
Boyle, R., Dahl, T., Bjerrum, C., and Canfield, D.: Bioturbation and
directionality in Earth's carbon isotope record across the
Neoproterozoic–Cambrian transition, Geobiology, 16, 252–278, 2018.
Brocks, J. J., Jarrett, A. J., Sirantoine, E., Hallmann, C., Hoshino, Y.,
and Liyanage, T.: The rise of algae in Cryogenian oceans and the emergence
of animals, Nature, 548, 578–581, https://doi.org/10.1038/nature23457, 2017.
Buesseler, K. O. and Boyd, P. W.: Shedding light on processes that control
particle export and flux attenuation in the twilight zone of the open ocean,
Limnol. Oceanogr., 54, 1210–1232, 2009.
Burdige, D. J.: Preservation of organic matter in marine sediments:
controls, mechanisms, and an imbalance in sediment organic carbon budgets?,
Chem. Rev., 107, 467–485, 2007.
Carr, M.-E., Friedrichs, M. A., Schmeltz, M., Aita, M. N., Antoine, D.,
Arrigo, K. R., Asanuma, I., Aumont, O., Barber, R., and Behrenfeld, M.:
A comparison of global estimates of marine primary production from ocean
color, Deep-Sea Res. Pt. II, 53,
741–770, 2006.
Cavan, E. L., Trimmer, M., Shelley, F., and Sanders, R.: Remineralization of
particulate organic carbon in an ocean oxygen minimum zone, Nat.
Commun., 8, 14847, https://doi.org/10.1038/ncomms14847, 2017.
Chavez, F. P. and Messié, M.: A comparison of eastern boundary
upwelling ecosystems, Prog. Oceanogr., 83, 80–96, 2009.
Cole, S. T., Wortham, C., Kunze, E., and Owens, W. B.: Eddy stirring and
horizontal diffusivity from Argo float observations: Geographic and depth
variability, Geophys. Res. Lett., 42, 3989–3997, 2015.
Dale, A. W., Sommer, S., Lomnitz, U., Montes, I., Treude, T., Liebetrau, V., Gier, J., Hensen, C., Dengler, M., Stolpovsky, K., Bryant, L. D., and Wallmann, K.: Organic carbon production, mineralisation and preservation on the Peruvian margin, Biogeosciences, 12, 1537–1559, https://doi.org/10.5194/bg-12-1537-2015, 2015.
DeVries, T. and Weber, T.: The export and fate of organic matter in the
ocean: New constraints from combining satellite and oceanographic tracer
observations, Global Biogeochem. Cy., 31, 535–555,
https://doi.org/10.1002/2016gb005551, 2017.
Duursma, E. and Boisson, M.: Global oceanic and atmospheric oxygen
stability considered in relation to the carbon cycle and to different time
scales, Oceanol. Acta, 17, 117–141, 1994.
Fennel, K., Follows, M., and Falkowski, P. G.: The co-evolution of the
nitrogen, carbon and oxygen cycles in the Proterozoic ocean, Am. J. Sci., 305, 526–545, 2005.
Filippelli, G. M.: The Global Phosphorus Cycle: Past, Present, and Future,
Elements, 4, 89–95, https://doi.org/10.2113/gselements.4.2.89, 2008.
Ganachaud, A. and Wunsch, C.: Improved estimates of global ocean
circulation, heat transport and mixing from hydrographic data, Nature, 408,
453, https://doi.org/10.1038/ncomms14847, 2000.
Garcia, H. E., Weathers, K., Paver, C. R., Smolyar, I., Boyer, T. P.,
Locarnini, R. A., Zweng, M. M., Mishonov, A. V., Baranova, O. K., Seidov, D., and Reagan, J. R.: World Ocean Atlas 2018, Volume 4: Dissolved Inorganic
Nutrients (phosphate, nitrate and nitrate + nitrite, silicate), edited by: Mishonov, A., available at: https://www.nodc.noaa.gov/OC5/woa18/pubwoa18.html (last access: November 2019), 2018a.
Garcia, H. E., Weathers, K., Paver, C. R., Smolyar, I., Boyer, T. P.,
Locarnini, R. A., Zweng, M. M., Mishonov, A. V., Baranova, O. K., Seidov, D., and Reagan, J. R.: World Ocean Atlas 2018, Volume 3: Dissolved Oxygen,
Apparent Oxygen Utilization, and Oxygen Saturation, edited by: Mishonov, A., available at: https://www.nodc.noaa.gov/OC5/woa18/pubwoa18.html (last access: November 2019), 2018b.
Gruber, N., Friedlingstein, P., Field, C. B., Valentini, R., Heimann, M.,
Richey, J. E., Lankao, P. R., Schulze, E.-D., and Chen, C.-T. A.: The
vulnerability of the carbon cycle in the 21st century: An assessment of
carbon-climate-human interactions, Scope-Scientific committee on problems of
the environment international council of scientific unions, 62, 45–76,
2004.
Gruber, N., Frenzel, H., Doney, S. C., Marchesiello, P., McWilliams, J. C.,
Moisan, J. R., Oram, J. J., Plattner, G.-K., and Stolzenbach, K. D.:
Eddy-resolving simulation of plankton ecosystem dynamics in the California
Current System, Deep-Sea Res. Pt. I, 53,
1483–1516, 2006.
Hedges, J. I., Hu, F. S., Devol, A. H., Hartnett, H. E., Tsamakis, E., and
Keil, R. G.: Sedimentary organic matter preservation; a test for selective
degradation under oxic conditions, Am. J. Sci., 299,
529–555, 1999.
Henson, S. A., Sanders, R., Madsen, E., Morris, P. J., Le Moigne, F., and
Quartly, G. D.: A reduced estimate of the strength of the ocean's biological
carbon pump, Geophys. Res. Lett., 38, L04606, https://doi.org/10.1029/2011GL046735, 2011.
Higgins, M. B., Robinson, R. S., Husson, J. M., Carter, S. J., and Pearson, A.: Dominant eukaryotic export production during ocean anoxic events
reflects the importance of recycled
Inthorn, M., Wagner, T., Scheeder, G., and Zabel, M.: Lateral transport
controls distribution, quality, and burial of organic matter along
continental slopes in high-productivity areas, Geology, 34, 205–208,
https://doi.org/10.1130/g22153.1, 2006.
Iversen, M. H. and Ploug, H.: Ballast minerals and the sinking carbon flux in the ocean: carbon-specific respiration rates and sinking velocity of marine snow aggregates, Biogeosciences, 7, 2613–2624, https://doi.org/10.5194/bg-7-2613-2010, 2010.
Iversen, M. H. and Poulsen, L. K.: Coprorhexy, coprophagy, and coprochaly
in the copepods Calanus helgolandicus, Pseudocalanus elongatus, and Oithona
similis, Mar. Ecol. Prog. Ser., 350, 79–89, 2007.
Jackson, G. A. and Burd, A. B.: Simulating aggregate dynamics in ocean
biogeochemical models, Prog. Oceanogr., 133, 55–65, 2015.
Karakaş, G., Nowald, N., Schäfer-Neth, C., Iversen, M., Barkmann, W., Fischer, G., Marchesiello, P., and Schlitzer, R.: Impact of particle
aggregation on vertical fluxes of organic matter, Prog. Oceanogr.,
83, 331–341, 2009.
Katz, M. E., Finkel, Z. V., Grzebyk, D., Knoll, A. H., and Falkowski, P. G.:
Evolutionary Trajectories and Biogeochemical Impacts of Marine Eukaryotic
Phytoplankton, Annu. Rev. Ecol. Evol. S., 35,
523–556, https://doi.org/10.1146/annurev.ecolsys.35.112202.130137, 2004.
Katz, M. E., Fennel, K., and Falkowski, P. G.: Geochemical and biological
consequences of phytoplankton evolution, in: Evolution of primary producers
in the sea, Elsevier, 405–430, https://doi.org/10.1016/B978-012370518-1/50019-9, 2007.
Keeling, R. F., Najjar, R. P., Bender, M. L., and Tans, P. P.: What
atmospheric oxygen measurements can tell us about the global carbon cycle,
Global Biogeochem. Cy., 7, 37–67, 1993.
Keeling, R. F., Körtzinger, A., and Gruber, N.: Ocean Deoxygenation in
a Warming World, Annu. Rev. Mar. Sci., 2, 199–229,
https://doi.org/10.1146/annurev.marine.010908.163855, 2010.
Klausmeier, C. A., Litchman, E., and Levin, S. A.: Phytoplankton growth and
stoichiometry under multiple nutrient limitation, Limnol. Oceanogr., 49, 1463–1470, 2004.
Krumhardt, K. M., Callnan, K., Roache-Johnson, K., Swett, T., Robinson, D.,
Reistetter, E. N., Saunders, J. K., Rocap, G., and Moore, L. R.: Effects of
phosphorus starvation versus limitation on the marine cyanobacterium
Prochlorococcus MED4 I: uptake physiology, Environ. Microbiol., 15,
2114–2128, https://doi.org/10.1111/1462-2920.12079, 2013.
Kwon, E. Y., Primeau, F., and Sarmiento, J. L.: The impact of
remineralization depth on the air–sea carbon balance, Nat. Geosci., 2,
630, https://doi.org/10.1038/ngeo612, 2009.
Lam, P. J., Doney, S. C., and Bishop, J. K. B.: The dynamic ocean biological
pump: Insights from a global compilation of particulate organic carbon,
CaCO3, and opal concentration profiles from the mesopelagic, Global
Biogeochem. Cy., 25, GB3009, https://doi.org/10.1029/2010gb003868, 2011.
Laufkötter, C., John, J. G., Stock, C. A., and Dunne, J. P.: Temperature
and oxygen dependence of the remineralization of organic matter, Global
Biogeochem. Cy., 31, 1038–1050, 2017.
Lenton, T. M. and Daines, S. J.: Biogeochemical transformations in the
history of the ocean, Annu. Rev. Mar. Sci., 9, 31–58, 2017.
Lenton, T. M. and Daines, S. J.: The effects of marine eukaryote evolution
on phosphorus, carbon and oxygen cycling across the Proterozoic–Phanerozoic
transition, Emerging Topics in Life Sciences, 2, 267–278, 2018.
Lenton, T. M. and Watson, A. J.: Redfield revisited: 1. Regulation of
nitrate, phosphate, and oxygen in the ocean, Global Biogeochem. Cy.,
14, 225–248, 2000.
Lenton, T. M., Boyle, R. A., Poulton, S. W., Shields-Zhou, G. A., and
Butterfield, N. J.: Co-evolution of eukaryotes and ocean oxygenation in the
Neoproterozoic era, Nat. Geosci., 7, 257–265, https://doi.org/10.1038/ngeo2108, 2014.
Lenton, T. M., Daines, S. J., and Mills, B. J.: COPSE reloaded: an improved
model of biogeochemical cycling over Phanerozoic time, Earth-Sci.
Rev., 178, 1–28, 2018.
Lin, S., Litaker, R. W., and Sunda, W. G.: Phosphorus physiological ecology
and molecular mechanisms in marine phytoplankton, J. Phycol., 52,
10–36, https://doi.org/10.1111/jpy.12365, 2016.
Logan, G. A., Hayes, J., Hieshima, G. B., and Summons, R. E.: Terminal
Proterozoic reorganization of biogeochemical cycles, Nature, 376, 53–56,
https://doi.org/10.1038/376053a0, 1995.
Lomas, M. W., Bonachela, J. A., Levin, S. A., and Martiny, A. C.: Impact of
ocean phytoplankton diversity on phosphate uptake, P.
Natl. Acad. Sci. USA, 111, 17540–17545, https://doi.org/10.1073/pnas.1420760111,
2014.
Lovecchio, E., Gruber, N., Münnich, M., and Lachkar, Z.: On the long-range offshore transport of organic carbon from the Canary Upwelling System to the open North Atlantic, Biogeosciences, 14, 3337–3369, https://doi.org/10.5194/bg-14-3337-2017, 2017.
Lu, W., Ridgwell, A., Thomas, E., Hardisty, D. S., Luo, G., Algeo, T. J.,
Saltzman, M. R., Gill, B. C., Shen, Y., and Ling, H.-F.: Late inception of
a resiliently oxygenated upper ocean, Science, 361, 174–177, 2018.
Marsay, C. M., Sanders, R. J., Henson, S. A., Pabortsava, K., Achterberg, E. P., and Lampitt, R. S.: Attenuation of sinking particulate organic carbon
flux through the mesopelagic ocean, P. Natl. Acad.
Sci. USA, 112, 1089–1094, 2015.
Martiny, A. C., Vrugt, J. A., and Lomas, M. W.: Concentrations and ratios of
particulate organic carbon, nitrogen, and phosphorus in the global ocean,
Sci. Data, 1, 1–7, 2014.
McDonnell, A. M. P., and Buesseler, K. O.: Variability in the average
sinking velocity of marine particles, Limnol. Oceanogr., 55,
2085–2096, https://doi.org/10.4319/lo.2010.55.5.2085, 2010.
Meyer, A., Sloyan, B. M., Polzin, K. L., Phillips, H. E., and Bindoff, N. L.: Mixing Variability in the Southern Ocean, J. Phys.
Oceanogr., 45, 966–987, https://doi.org/10.1175/jpo-d-14-0110.1, 2015.
Meyer, K., Ridgwell, A., and Payne, J.: The influence of the biological pump
on ocean chemistry: implications for long-term trends in marine redox
chemistry, the global carbon cycle, and marine animal ecosystems,
Geobiology, 14, 207–219, 2016.
Moore, J. K., Doney, S. C., and Lindsay, K.: Upper ocean ecosystem dynamics
and iron cycling in a global three-dimensional model, Global Biogeochem.
Cy., 18, GB4028, https://doi.org/10.1029/2004GB002220, 2004.
Paulmier, A., Kriest, I., and Oschlies, A.: Stoichiometries of remineralisation and denitrification in global biogeochemical ocean models, Biogeosciences, 6, 923–935, https://doi.org/10.5194/bg-6-923-2009, 2009.
Petit, J.-R., Jouzel, J., Raynaud, D., Barkov, N. I., Barnola, J.-M.,
Basile, I., Bender, M., Chappellaz, J., Davis, M., and Delaygue, G.: Climate
and atmospheric history of the past 420 000 years from the Vostok ice core,
Antarctica, Nature, 399, 429–436, 1999.
Ploug, H.: Small-scale oxygen fluxes and remineralization in sinking
aggregates, Limnol. Oceanogr., 46, 1624–1631, 2001.
Polovina, J. J., Mitchum, G. T., and Evans, G. T.: Decadal and basin-scale
variation in mixed layer depth and the impact on biological production in
the Central and North Pacific, 1960–88, Deep-Sea Res. Pt. I, 42, 1701–1716, 1995.
Reinhard, C. T., Planavsky, N. J., Gill, B. C., Ozaki, K., Robbins, L. J.,
Lyons, T. W., Fischer, W. W., Wang, C., Cole, D. B., and Konhauser, K. O.:
Evolution of the global phosphorus cycle, Nature, 541, 386–389, https://doi.org/10.1038/nature20772, 2017.
Ridgwell, A.: Evolution of the ocean's “biological pump”, P. Natl. Acad. Sci. USA, 108, 16485–16486, 2011.
Riley, J., Sanders, R., Marsay, C., Le Moigne, F. A., Achterberg, E. P., and
Poulton, A.: The relative contribution of fast and slow sinking particles to
ocean carbon export, Global Biogeochem. Cy., 26, 2012.
Rivkin, R. B. and Legendre, L.: Biogenic Carbon Cycling in the Upper Ocean:
Effects of Microbial Respiration, Science, 291, 2398–2400,
https://doi.org/10.1126/science.291.5512.2398, 2001.
Sarmiento, J. L. and Gruber, N.: Ocean Biogeochemical Dynamics, Princeton
University Press, Princeton 2006.
Sharples, J., Middelburg, J. J., Fennel, K., and Jickells, T. D.: What
proportion of riverine nutrients reaches the open ocean?, Global
Biogeochem. Cy., 31, 39–58, https://doi.org/10.1002/2016gb005483, 2017.
Slomp, C. P. and Van Cappellen, P.: The global marine phosphorus cycle: sensitivity to oceanic circulation, Biogeosciences, 4, 155–171, https://doi.org/10.5194/bg-4-155-2007, 2007.
Stukel, M. R. and Ducklow, H. W.: Stirring up the biological pump: Vertical
mixing and carbon export in the Southern Ocean, Global Biogeochem.
Cy., 31, 1420–1434, 2017.
Sydeman, W. J., García-Reyes, M., Schoeman, D. S., Rykaczewski, R. R.,
Thompson, S. A., Black, B. A., and Bograd, S. J.: Climate change and wind
intensification in coastal upwelling ecosystems, Science, 345, 77–80,
https://doi.org/10.1126/science.1251635, 2014.
Tantanasarit, C., Englande, A. J., and Babel, S.: Nitrogen, phosphorus and
silicon uptake kinetics by marine diatom Chaetoceros calcitrans under high
nutrient concentrations, J. Exp. Mar. Biol. Ecol.,
446, 67–75, 2013.
Van Cappellen, P. and Ingall, E. D.: Redox Stabilization of the Atmosphere
and Oceans by Phosphorus-Limited Marine Productivity, Science, 271, 493–496,
https://doi.org/10.1126/science.271.5248.493, 1996.
Wallmann, K.: Phosphorus imbalance in the global ocean?, Global Biogeochem.
Cy., 24, GB4030, https://doi.org/10.1029/2009GB003643, 2010.
Watson, A. J., Lenton, T. M., and Mills, B. J. W.: Ocean deoxygenation, the
global phosphorus cycle and the possibility of human-caused large-scale
ocean anoxia, Philos. T. R. Soc. A, 375, 20160318,
https://doi.org/10.1098/rsta.2016.0318, 2017.
Wilson, S. E., Steinberg, D. K., and Buesseler, K. O.: Changes in fecal
pellet characteristics with depth as indicators of zooplankton repackaging
of particles in the mesopelagic zone of the subtropical and subarctic North
Pacific Ocean, Deep-Sea Res. Pt. II,
55, 1636–1647, 2008.
Wollast, R.: Evaluation and comparison of the global carbon cycle in the
coastal zone and in the open ocean, The Sea, 10, 213–252, 1998.
Yool, A. and Tyrrell, T.: Role of diatoms in regulating the ocean's silicon
cycle, Global Biogeochem. Cy., 17, 1103, https://doi.org/10.1029/2002GB002018, 2003.
Short summary
We present here the newly developed BPOP box model. BPOP is aimed at studying the impact of large-scale changes in the biological pump, i.e. the cycle of production, export and remineralization of the marine organic matter, on the nutrient and oxygen concentrations in the shelf and open ocean. This model has been developed to investigate the global consequences of the evolution of larger and heavier phytoplankton cells but can be applied to a variety of past and future case studies.
We present here the newly developed BPOP box model. BPOP is aimed at studying the impact of...
