Articles | Volume 13, issue 1
https://doi.org/10.5194/gmd-13-169-2020
https://doi.org/10.5194/gmd-13-169-2020
Model description paper
 | 
27 Jan 2020
Model description paper |  | 27 Jan 2020

AtChem (version 1), an open-source box model for the Master Chemical Mechanism

Roberto Sommariva, Sam Cox, Chris Martin, Kasia Borońska, Jenny Young, Peter K. Jimack, Michael J. Pilling, Vasileios N. Matthaios, Beth S. Nelson, Mike J. Newland, Marios Panagi, William J. Bloss, Paul S. Monks, and Andrew R. Rickard

Related authors

Modelling Arctic lower-tropospheric ozone: processes controlling seasonal variations
Wanmin Gong, Stephen R. Beagley, Kenjiro Toyota, Henrik Skov, Jesper Heile Christensen, Alex Lupu, Diane Pendlebury, Junhua Zhang, Ulas Im, Yugo Kanaya, Alfonso Saiz-Lopez, Roberto Sommariva, Peter Effertz, John W. Halfacre, Nis Jepsen, Rigel Kivi, Theodore K. Koenig, Katrin Müller, Claus Nordstrøm, Irina Petropavlovskikh, Paul B. Shepson, William R. Simpson, Sverre Solberg, Ralf M. Staebler, David W. Tarasick, Roeland Van Malderen, and Mika Vestenius
Atmos. Chem. Phys., 25, 8355–8405, https://doi.org/10.5194/acp-25-8355-2025,https://doi.org/10.5194/acp-25-8355-2025, 2025
Short summary
Observations of tropospheric HONO are incompatible with understanding of atmospheric chemistry
Matthew James Rowlinson, Lucy J. Carpenter, Mat J. Evans, James D. Lee, Simone Andersen, Tomas Sherwen, Anna B. Callaghan, Roberto Sommariva, William Bloss, Siqi Hou, Leigh R. Crilley, Klaus Pfeilsticker, Benjamin Weyland, Thomas B. Ryerson, Patrick R. Veres, Pedro Campuzano-Jost, Hongyu Guo, Benjamin A. Nault, Jose L. Jimenez, and Khanneh Wadinga Fomba
EGUsphere, https://doi.org/10.5194/egusphere-2025-830,https://doi.org/10.5194/egusphere-2025-830, 2025
Short summary
Observational ozone data over the global oceans and polar regions: The TOAR-II Oceans data set version 2024
Yugo Kanaya, Roberto Sommariva, Alfonso Saiz-Lopez, Andrea Mazzeo, Theodore K. Koenig, Kaori Kawana, James E. Johnson, Aurélie Colomb, Pierre Tulet, Suzie Molloy, Ian E. Galbally, Rainer Volkamer, Anoop Mahajan, John W. Halfacre, Paul B. Shepson, Julia Schmale, Hélène Angot, Byron Blomquist, Matthew D. Shupe, Detlev Helmig, Junsu Gil, Meehye Lee, Sean C. Coburn, Ivan Ortega, Gao Chen, James Lee, Kenneth C. Aikin, David D. Parrish, John S. Holloway, Thomas B. Ryerson, Ilana B. Pollack, Eric J. Williams, Brian M. Lerner, Andrew J. Weinheimer, Teresa Campos, Frank M. Flocke, J. Ryan Spackman, Ilann Bourgeois, Jeff Peischl, Chelsea R. Thompson, Ralf M. Staebler, Amir A. Aliabadi, Wanmin Gong, Roeland Van Malderen, Anne M. Thompson, Ryan M. Stauffer, Debra E. Kollonige, Juan Carlos Gómez Martin, Masatomo Fujiwara, Katie Read, Matthew Rowlinson, Keiichi Sato, Junichi Kurokawa, Yoko Iwamoto, Fumikazu Taketani, Hisahiro Takashima, Monica Navarro Comas, Marios Panagi, and Martin G. Schultz
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-566,https://doi.org/10.5194/essd-2024-566, 2025
Revised manuscript accepted for ESSD
Short summary
Applications of Machine Learning and Artificial Intelligence in Tropospheric Ozone Research
Sebastian H. M. Hickman, Makoto Kelp, Paul T. Griffiths, Kelsey Doerksen, Kazuyuki Miyazaki, Elyse A. Pennington, Gerbrand Koren, Fernando Iglesias-Suarez, Martin G. Schultz, Kai-Lan Chang, Owen R. Cooper, Alexander T. Archibald, Roberto Sommariva, David Carlson, Hantao Wang, J. Jason West, and Zhenze Liu
EGUsphere, https://doi.org/10.5194/egusphere-2024-3739,https://doi.org/10.5194/egusphere-2024-3739, 2025
Short summary
Radical chemistry and ozone production at a UK coastal receptor site
Robert Woodward-Massey, Roberto Sommariva, Lisa K. Whalley, Danny R. Cryer, Trevor Ingham, William J. Bloss, Stephen M. Ball, Sam Cox, James D. Lee, Chris P. Reed, Leigh R. Crilley, Louisa J. Kramer, Brian J. Bandy, Grant L. Forster, Claire E. Reeves, Paul S. Monks, and Dwayne E. Heard
Atmos. Chem. Phys., 23, 14393–14424, https://doi.org/10.5194/acp-23-14393-2023,https://doi.org/10.5194/acp-23-14393-2023, 2023
Short summary

Related subject area

Atmospheric sciences
Development of the CMA-GFS-AERO 4D-Var assimilation system v1.0 – Part 1: System description and preliminary experimental results
Yongzhu Liu, Xiaoye Zhang, Wei Han, Chao Wang, Wenxing Jia, Deying Wang, Zhaorong Zhuang, and Xueshun Shen
Geosci. Model Dev., 18, 4855–4876, https://doi.org/10.5194/gmd-18-4855-2025,https://doi.org/10.5194/gmd-18-4855-2025, 2025
Short summary
Optimized dynamic mode decomposition for reconstruction and forecasting of atmospheric chemistry data
Meghana Velagar, Christoph Keller, and J. Nathan Kutz
Geosci. Model Dev., 18, 4667–4684, https://doi.org/10.5194/gmd-18-4667-2025,https://doi.org/10.5194/gmd-18-4667-2025, 2025
Short summary
Interpolating turbulent heat fluxes missing from a prairie observation on the Tibetan Plateau using artificial intelligence models
Quanzhe Hou, Zhiqiu Gao, Zexia Duan, and Minghui Yu
Geosci. Model Dev., 18, 4625–4641, https://doi.org/10.5194/gmd-18-4625-2025,https://doi.org/10.5194/gmd-18-4625-2025, 2025
Short summary
Carbon dioxide plume dispersion simulated at the hectometer scale using DALES: model formulation and observational evaluation
Arseniy Karagodin-Doyennel, Fredrik Jansson, Bart J. H. van Stratum, Hugo Denier van der Gon, Jordi Vilà-Guerau de Arellano, and Sander Houweling
Geosci. Model Dev., 18, 4571–4599, https://doi.org/10.5194/gmd-18-4571-2025,https://doi.org/10.5194/gmd-18-4571-2025, 2025
Short summary
Low-level jets in the North and Baltic seas: mesoscale model sensitivity and climatology using WRF V4.2.1
Bjarke T. E. Olsen, Andrea N. Hahmann, Nicolas G. Alonso-de-Linaje, Mark Žagar, and Martin Dörenkämper
Geosci. Model Dev., 18, 4499–4533, https://doi.org/10.5194/gmd-18-4499-2025,https://doi.org/10.5194/gmd-18-4499-2025, 2025
Short summary

Cited articles

Abbatt, J., George, C., Melamed, M., Monks, P., Pandis, S., and Rudich, Y.: Fundamentals of atmospheric chemistry: keeping a three-legged stool balanced, Atmos. Environ., 84, 390–391, https://doi.org/10.1016/j.atmosenv.2013.10.025, 2014. a
Bloss, C., Wagner, V., Bonzanini, A., Jenkin, M. E., Wirtz, K., Martin-Reviejo, M., and Pilling, M. J.: Evaluation of detailed aromatic mechanisms (MCMv3 and MCMv3.1) against environmental chamber data, Atmos. Chem. Phys., 5, 623–639, https://doi.org/10.5194/acp-5-623-2005, 2005a. a
Bloss, C., Wagner, V., Jenkin, M. E., Volkamer, R., Bloss, W. J., Lee, J. D., Heard, D. E., Wirtz, K., Martin-Reviejo, M., Rea, G., Wenger, J. C., and Pilling, M. J.: Development of a detailed chemical mechanism (MCMv3.1) for the atmospheric oxidation of aromatic hydrocarbons, Atmos. Chem. Phys., 5, 641–664, https://doi.org/10.5194/acp-5-641-2005, 2005b. a
Bonet, F. J., Pérez-Pérez, R., Benito, B. M., de Albuquerque, F. S., and Zamora, R.: Documenting, storing, and executing models in ecology: a conceptual framework and real implementation in a global change monitoring program, Environ. Modell. Softw., 52, 192–199, https://doi.org/10.1016/j.envsoft.2013.10.027, 2014. a
Brauers, T., Hausmann, M., Bister, A., Kraus, A., and Dorn, H.-P.: OH radicals in the boundary layer of the Atlantic Ocean: 1. Measurements by long-path laser absorption spectroscopy, J. Geophys. Res., 106, 7399–7414, https://doi.org/10.1029/2000JD900679, 2001. a
Download
Short summary
This paper presents the AtChem software, which can be used to build box models for atmospheric chemistry studies. The software is designed to facilitate the use of one of the most important chemical mechanisms used by atmospheric scientists, the Master Chemical Mechanism. AtChem exists in two versions: an on-line application for laboratory studies and educational or outreach activities and an offline version for more complex models and batch simulations. AtChem is open source under MIT License.
Share