Articles | Volume 4, issue 2
https://doi.org/10.5194/gmd-4-381-2011
© Author(s) 2011. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-4-381-2011
© Author(s) 2011. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Medusa-1.0: a new intermediate complexity plankton ecosystem model for the global domain
A. Yool
National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton SO14 3ZH, UK
E. E. Popova
National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton SO14 3ZH, UK
T. R. Anderson
National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton SO14 3ZH, UK
Viewed
Total article views: 23,158 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 01 Feb 2013, article published on 29 Oct 2010)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
3,938 | 18,904 | 316 | 23,158 | 280 | 239 |
- HTML: 3,938
- PDF: 18,904
- XML: 316
- Total: 23,158
- BibTeX: 280
- EndNote: 239
Total article views: 22,451 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 01 Feb 2013, article published on 10 May 2011)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
3,662 | 18,508 | 281 | 22,451 | 257 | 234 |
- HTML: 3,662
- PDF: 18,508
- XML: 281
- Total: 22,451
- BibTeX: 257
- EndNote: 234
Total article views: 707 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 01 Feb 2013, article published on 29 Oct 2010)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
276 | 396 | 35 | 707 | 23 | 5 |
- HTML: 276
- PDF: 396
- XML: 35
- Total: 707
- BibTeX: 23
- EndNote: 5
Cited
58 citations as recorded by crossref.
- Developing integrated models of Southern Ocean food webs: Including ecological complexity, accounting for uncertainty and the importance of scale E. Murphy et al. 10.1016/j.pocean.2012.03.006
- Remineralization of particulate organic carbon in an ocean oxygen minimum zone E. Cavan et al. 10.1038/ncomms14847
- Estimation of primary production in the Arctic Ocean using ocean colour remote sensing and coupled physical–biological models: Strengths, limitations and how they compare M. Babin et al. 10.1016/j.pocean.2015.08.008
- A new marine ecosystem model for the University of Victoria Earth System Climate Model D. Keller et al. 10.5194/gmd-5-1195-2012
- A review of the measurement and modelling of dinoflagellate bioluminescence C. Marcinko et al. 10.1016/j.pocean.2012.10.008
- An integrated framework for assessing coastal community vulnerability across cultures, oceans and scales S. Aswani et al. 10.1080/17565529.2018.1442795
- Challenges in integrative approaches to modelling the marine ecosystems of the North Atlantic: Physics to fish and coasts to ocean J. Holt et al. 10.1016/j.pocean.2014.04.024
- Exploring the ecology of the mesopelagic biological pump E. Cavan et al. 10.1016/j.pocean.2019.102125
- MEDUSA-2.0: an intermediate complexity biogeochemical model of the marine carbon cycle for climate change and ocean acidification studies A. Yool et al. 10.5194/gmd-6-1767-2013
- The Cost of Reducing the North Atlantic Ocean Biological Carbon Pump M. Barange et al. 10.3389/fmars.2016.00290
- The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python B. Post et al. 10.5194/gmd-17-1175-2024
- A discrete interaction numerical model for coagulation and fragmentation of marine detritic particulate matter (Coagfrag v.1) G. Gremion et al. 10.5194/gmd-14-4535-2021
- Tuning and assessment of the HYCOM-NORWECOM V2.1 biogeochemical modeling system for the North Atlantic and Arctic oceans A. Samuelsen et al. 10.5194/gmd-8-2187-2015
- Perturbed Biology and Physics Signatures in a 1-D Ocean Biogeochemical Model Ensemble P. Anugerahanti et al. 10.3389/fmars.2020.00549
- Assessment and Constraint of Mesozooplankton in CMIP6 Earth System Models C. Petrik et al. 10.1029/2022GB007367
- Swept under the carpet: organic matter burial decreases global ocean biogeochemical model sensitivity to remineralization length scale I. Kriest & A. Oschlies 10.5194/bg-10-8401-2013
- PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies O. Aumont et al. 10.5194/gmd-8-2465-2015
- The case for open computer programs D. Ince et al. 10.1038/nature10836
- The impact of global warming on seasonality of ocean primary production S. Henson et al. 10.5194/bg-10-4357-2013
- Model of Early Diagenesis in the Upper Sediment with Adaptable complexity – MEDUSA (v. 2): a time-dependent biogeochemical sediment module for Earth system models, process analysis and teaching G. Munhoven 10.5194/gmd-14-3603-2021
- Finding Liebig’s law of the minimum J. Tang & W. Riley 10.1002/eap.2458
- Climate change impacts on southern Ross Sea phytoplankton composition, productivity, and export D. Kaufman et al. 10.1002/2016JC012514
- Regional variability of acidification in the Arctic: a sea of contrasts E. Popova et al. 10.5194/bg-11-293-2014
- Sensitivity of secondary production and export flux to choice of trophic transfer formulation in marine ecosystem models T. Anderson et al. 10.1016/j.jmarsys.2012.09.008
- Using scenarios to project the changing profitability of fisheries under climate change M. Jones et al. 10.1111/faf.12081
- The Madagascar Bloom: A serendipitous study M. Srokosz & G. Quartly 10.1029/2012JC008339
- Calibration of a simple and a complex model of global marine biogeochemistry I. Kriest 10.5194/bg-14-4965-2017
- Assimilating bio-optical glider data during a phytoplankton bloom in the southern Ross Sea D. Kaufman et al. 10.5194/bg-15-73-2018
- An Assessment of Vertical Carbon Flux Parameterizations Using Backscatter Data From BGC Argo B. Wang & K. Fennel 10.1029/2022GL101220
- Spatial Modeling of Calanus finmarchicus and Calanus helgolandicus: Parameter Differences Explain Differences in Biogeography R. Wilson et al. 10.3389/fmars.2016.00157
- Net primary productivity estimates and environmental variables in the Arctic Ocean: An assessment of coupled physical-biogeochemical models Y. Lee et al. 10.1002/2016JC011993
- Climate change and ocean acidification impacts on lower trophic levels and the export of organic carbon to the deep ocean A. Yool et al. 10.5194/bg-10-5831-2013
- Modeling What We Sample and Sampling What We Model: Challenges for Zooplankton Model Assessment J. Everett et al. 10.3389/fmars.2017.00077
- A skill assessment of the biogeochemical model REcoM2 coupled to the Finite Element Sea Ice–Ocean Model (FESOM 1.3) V. Schourup-Kristensen et al. 10.5194/gmd-7-2769-2014
- Mechanistic site-based emulation of a global ocean biogeochemical model (MEDUSA 1.0) for parametric analysis and calibration: an application of the Marine Model Optimization Testbed (MarMOT 1.1) J. Hemmings et al. 10.5194/gmd-8-697-2015
- Marine regime shifts in ocean biogeochemical models: a case study in the Gulf of Alaska C. Beaulieu et al. 10.5194/bg-13-4533-2016
- Top-down control of marine phytoplankton diversity in a global ecosystem model A. Prowe et al. 10.1016/j.pocean.2011.11.016
- Explicit Planktic Calcifiers in the University of Victoria Earth System Climate Model, Version 2.9 K. Kvale et al. 10.1080/07055900.2015.1049112
- Modeling silicate–nitrate–ammonium co-limitation of algal growth and the importance of bacterial remineralization based on an experimental Arctic coastal spring bloom culture study T. Vonnahme et al. 10.5194/bg-18-1719-2021
- Изучение связи первичной продукции и морского льда в арктических морях: оценки на основе малокомпонентной модели морской экосистемы (на англ.яз.), "Фундаментальная и прикладная гидрофизика" С. Мартьянов et al. 10.7868/S2073667318020107
- The link between surface and sub-surface chlorophyll-a in the centre of the Atlantic subtropical gyres: a comparison of observations and models G. Quartly et al. 10.3389/fmars.2023.1197753
- EMPOWER-1.0: an Efficient Model of Planktonic ecOsystems WrittEn in R T. Anderson et al. 10.5194/gmd-8-2231-2015
- Addressing the impact of environmental uncertainty in plankton model calibration with a dedicated software system: the Marine Model Optimization Testbed (MarMOT 1.1 alpha) J. Hemmings & P. Challenor 10.5194/gmd-5-471-2012
- Variability in efficiency of particulate organic carbon export: A model study S. Henson et al. 10.1002/2014GB004965
- A derivative-free optimisation method for global ocean biogeochemical models S. Oliver et al. 10.5194/gmd-15-3537-2022
- Coccolithophore surface distributions in the North Atlantic and their modulation of the air-sea flux of CO<sub>2</sub> from 10 years of satellite Earth observation data J. Shutler et al. 10.5194/bg-10-2699-2013
- Applications of biogeochemical models in different marine environments: a review K. Ismail & M. Al-Shehhi 10.3389/fenvs.2023.1198856
- Marine biogeochemical cycling and oceanic CO<sub>2</sub> uptake simulated by the NUIST Earth System Model version 3 (NESM v3) Y. Dai et al. 10.5194/gmd-13-3119-2020
- Iron Limitation and Uneven Grazing Pressure on Phytoplankton Co‐Lead the Seasonal Species Succession in the Ross Ice Shelf Polynya Y. Zhang et al. 10.1029/2022JC019026
- Reproducible and relocatable regional ocean modelling: fundamentals and practices J. Polton et al. 10.5194/gmd-16-1481-2023
- Development of the UKESM-TOPAZ Earth System Model (Version 1.0) and Preliminary Evaluation of its Biogeochemical Simulations H. Lee et al. 10.1007/s13143-021-00263-0
- A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations P. Anugerahanti et al. 10.5194/bg-15-6685-2018
- The Biological Carbon Pump in the North Atlantic R. Sanders et al. 10.1016/j.pocean.2014.05.005
- iMarNet: an ocean biogeochemistry model intercomparison project within a common physical ocean modelling framework L. Kwiatkowski et al. 10.5194/bg-11-7291-2014
- Making modelling count - increasing the contribution of shelf-seas community and ecosystem models to policy development and management K. Hyder et al. 10.1016/j.marpol.2015.07.015
- How well do global ocean biogeochemistry models simulate dissolved iron distributions? A. Tagliabue et al. 10.1002/2015GB005289
- Control of primary production in the Arctic by nutrients and light: insights from a high resolution ocean general circulation model E. Popova et al. 10.5194/bg-7-3569-2010
- Comparison of optically derived particle size distributions: scattering over the full angular range versus diffraction at near forward angles X. Zhang et al. 10.1364/AO.51.005085
56 citations as recorded by crossref.
- Developing integrated models of Southern Ocean food webs: Including ecological complexity, accounting for uncertainty and the importance of scale E. Murphy et al. 10.1016/j.pocean.2012.03.006
- Remineralization of particulate organic carbon in an ocean oxygen minimum zone E. Cavan et al. 10.1038/ncomms14847
- Estimation of primary production in the Arctic Ocean using ocean colour remote sensing and coupled physical–biological models: Strengths, limitations and how they compare M. Babin et al. 10.1016/j.pocean.2015.08.008
- A new marine ecosystem model for the University of Victoria Earth System Climate Model D. Keller et al. 10.5194/gmd-5-1195-2012
- A review of the measurement and modelling of dinoflagellate bioluminescence C. Marcinko et al. 10.1016/j.pocean.2012.10.008
- An integrated framework for assessing coastal community vulnerability across cultures, oceans and scales S. Aswani et al. 10.1080/17565529.2018.1442795
- Challenges in integrative approaches to modelling the marine ecosystems of the North Atlantic: Physics to fish and coasts to ocean J. Holt et al. 10.1016/j.pocean.2014.04.024
- Exploring the ecology of the mesopelagic biological pump E. Cavan et al. 10.1016/j.pocean.2019.102125
- MEDUSA-2.0: an intermediate complexity biogeochemical model of the marine carbon cycle for climate change and ocean acidification studies A. Yool et al. 10.5194/gmd-6-1767-2013
- The Cost of Reducing the North Atlantic Ocean Biological Carbon Pump M. Barange et al. 10.3389/fmars.2016.00290
- The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python B. Post et al. 10.5194/gmd-17-1175-2024
- A discrete interaction numerical model for coagulation and fragmentation of marine detritic particulate matter (Coagfrag v.1) G. Gremion et al. 10.5194/gmd-14-4535-2021
- Tuning and assessment of the HYCOM-NORWECOM V2.1 biogeochemical modeling system for the North Atlantic and Arctic oceans A. Samuelsen et al. 10.5194/gmd-8-2187-2015
- Perturbed Biology and Physics Signatures in a 1-D Ocean Biogeochemical Model Ensemble P. Anugerahanti et al. 10.3389/fmars.2020.00549
- Assessment and Constraint of Mesozooplankton in CMIP6 Earth System Models C. Petrik et al. 10.1029/2022GB007367
- Swept under the carpet: organic matter burial decreases global ocean biogeochemical model sensitivity to remineralization length scale I. Kriest & A. Oschlies 10.5194/bg-10-8401-2013
- PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies O. Aumont et al. 10.5194/gmd-8-2465-2015
- The case for open computer programs D. Ince et al. 10.1038/nature10836
- The impact of global warming on seasonality of ocean primary production S. Henson et al. 10.5194/bg-10-4357-2013
- Model of Early Diagenesis in the Upper Sediment with Adaptable complexity – MEDUSA (v. 2): a time-dependent biogeochemical sediment module for Earth system models, process analysis and teaching G. Munhoven 10.5194/gmd-14-3603-2021
- Finding Liebig’s law of the minimum J. Tang & W. Riley 10.1002/eap.2458
- Climate change impacts on southern Ross Sea phytoplankton composition, productivity, and export D. Kaufman et al. 10.1002/2016JC012514
- Regional variability of acidification in the Arctic: a sea of contrasts E. Popova et al. 10.5194/bg-11-293-2014
- Sensitivity of secondary production and export flux to choice of trophic transfer formulation in marine ecosystem models T. Anderson et al. 10.1016/j.jmarsys.2012.09.008
- Using scenarios to project the changing profitability of fisheries under climate change M. Jones et al. 10.1111/faf.12081
- The Madagascar Bloom: A serendipitous study M. Srokosz & G. Quartly 10.1029/2012JC008339
- Calibration of a simple and a complex model of global marine biogeochemistry I. Kriest 10.5194/bg-14-4965-2017
- Assimilating bio-optical glider data during a phytoplankton bloom in the southern Ross Sea D. Kaufman et al. 10.5194/bg-15-73-2018
- An Assessment of Vertical Carbon Flux Parameterizations Using Backscatter Data From BGC Argo B. Wang & K. Fennel 10.1029/2022GL101220
- Spatial Modeling of Calanus finmarchicus and Calanus helgolandicus: Parameter Differences Explain Differences in Biogeography R. Wilson et al. 10.3389/fmars.2016.00157
- Net primary productivity estimates and environmental variables in the Arctic Ocean: An assessment of coupled physical-biogeochemical models Y. Lee et al. 10.1002/2016JC011993
- Climate change and ocean acidification impacts on lower trophic levels and the export of organic carbon to the deep ocean A. Yool et al. 10.5194/bg-10-5831-2013
- Modeling What We Sample and Sampling What We Model: Challenges for Zooplankton Model Assessment J. Everett et al. 10.3389/fmars.2017.00077
- A skill assessment of the biogeochemical model REcoM2 coupled to the Finite Element Sea Ice–Ocean Model (FESOM 1.3) V. Schourup-Kristensen et al. 10.5194/gmd-7-2769-2014
- Mechanistic site-based emulation of a global ocean biogeochemical model (MEDUSA 1.0) for parametric analysis and calibration: an application of the Marine Model Optimization Testbed (MarMOT 1.1) J. Hemmings et al. 10.5194/gmd-8-697-2015
- Marine regime shifts in ocean biogeochemical models: a case study in the Gulf of Alaska C. Beaulieu et al. 10.5194/bg-13-4533-2016
- Top-down control of marine phytoplankton diversity in a global ecosystem model A. Prowe et al. 10.1016/j.pocean.2011.11.016
- Explicit Planktic Calcifiers in the University of Victoria Earth System Climate Model, Version 2.9 K. Kvale et al. 10.1080/07055900.2015.1049112
- Modeling silicate–nitrate–ammonium co-limitation of algal growth and the importance of bacterial remineralization based on an experimental Arctic coastal spring bloom culture study T. Vonnahme et al. 10.5194/bg-18-1719-2021
- Изучение связи первичной продукции и морского льда в арктических морях: оценки на основе малокомпонентной модели морской экосистемы (на англ.яз.), "Фундаментальная и прикладная гидрофизика" С. Мартьянов et al. 10.7868/S2073667318020107
- The link between surface and sub-surface chlorophyll-a in the centre of the Atlantic subtropical gyres: a comparison of observations and models G. Quartly et al. 10.3389/fmars.2023.1197753
- EMPOWER-1.0: an Efficient Model of Planktonic ecOsystems WrittEn in R T. Anderson et al. 10.5194/gmd-8-2231-2015
- Addressing the impact of environmental uncertainty in plankton model calibration with a dedicated software system: the Marine Model Optimization Testbed (MarMOT 1.1 alpha) J. Hemmings & P. Challenor 10.5194/gmd-5-471-2012
- Variability in efficiency of particulate organic carbon export: A model study S. Henson et al. 10.1002/2014GB004965
- A derivative-free optimisation method for global ocean biogeochemical models S. Oliver et al. 10.5194/gmd-15-3537-2022
- Coccolithophore surface distributions in the North Atlantic and their modulation of the air-sea flux of CO<sub>2</sub> from 10 years of satellite Earth observation data J. Shutler et al. 10.5194/bg-10-2699-2013
- Applications of biogeochemical models in different marine environments: a review K. Ismail & M. Al-Shehhi 10.3389/fenvs.2023.1198856
- Marine biogeochemical cycling and oceanic CO<sub>2</sub> uptake simulated by the NUIST Earth System Model version 3 (NESM v3) Y. Dai et al. 10.5194/gmd-13-3119-2020
- Iron Limitation and Uneven Grazing Pressure on Phytoplankton Co‐Lead the Seasonal Species Succession in the Ross Ice Shelf Polynya Y. Zhang et al. 10.1029/2022JC019026
- Reproducible and relocatable regional ocean modelling: fundamentals and practices J. Polton et al. 10.5194/gmd-16-1481-2023
- Development of the UKESM-TOPAZ Earth System Model (Version 1.0) and Preliminary Evaluation of its Biogeochemical Simulations H. Lee et al. 10.1007/s13143-021-00263-0
- A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations P. Anugerahanti et al. 10.5194/bg-15-6685-2018
- The Biological Carbon Pump in the North Atlantic R. Sanders et al. 10.1016/j.pocean.2014.05.005
- iMarNet: an ocean biogeochemistry model intercomparison project within a common physical ocean modelling framework L. Kwiatkowski et al. 10.5194/bg-11-7291-2014
- Making modelling count - increasing the contribution of shelf-seas community and ecosystem models to policy development and management K. Hyder et al. 10.1016/j.marpol.2015.07.015
- How well do global ocean biogeochemistry models simulate dissolved iron distributions? A. Tagliabue et al. 10.1002/2015GB005289
2 citations as recorded by crossref.
- Control of primary production in the Arctic by nutrients and light: insights from a high resolution ocean general circulation model E. Popova et al. 10.5194/bg-7-3569-2010
- Comparison of optically derived particle size distributions: scattering over the full angular range versus diffraction at near forward angles X. Zhang et al. 10.1364/AO.51.005085
Saved (final revised paper)
Saved (final revised paper)
Latest update: 21 Nov 2024