Articles | Volume 13, issue 9
https://doi.org/10.5194/gmd-13-4503-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-4503-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
CSIRO Environmental Modelling Suite (EMS): scientific description of the optical and biogeochemical models (vB3p0)
CSIRO, Oceans and Atmosphere, Hobart, Australia
Karen A. Wild-Allen
CSIRO, Oceans and Atmosphere, Hobart, Australia
John Parslow
CSIRO, Oceans and Atmosphere, Hobart, Australia
Mathieu Mongin
CSIRO, Oceans and Atmosphere, Hobart, Australia
Barbara Robson
Australian Institute of Marine Science, Townsville, Australia
Jennifer Skerratt
CSIRO, Oceans and Atmosphere, Hobart, Australia
Farhan Rizwi
CSIRO, Oceans and Atmosphere, Hobart, Australia
Monika Soja-Woźniak
CSIRO, Oceans and Atmosphere, Hobart, Australia
Emlyn Jones
CSIRO, Oceans and Atmosphere, Hobart, Australia
Mike Herzfeld
CSIRO, Oceans and Atmosphere, Hobart, Australia
Nugzar Margvelashvili
CSIRO, Oceans and Atmosphere, Hobart, Australia
John Andrewartha
CSIRO, Oceans and Atmosphere, Hobart, Australia
Clothilde Langlais
CSIRO, Oceans and Atmosphere, Hobart, Australia
Matthew P. Adams
School of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia
Nagur Cherukuru
CSIRO, Oceans and Atmosphere, Canberra, Australia
Malin Gustafsson
Plant Functional Biology and Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, Australia
Scott Hadley
CSIRO, Oceans and Atmosphere, Hobart, Australia
Peter J. Ralph
Plant Functional Biology and Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, Australia
Uwe Rosebrock
CSIRO, Oceans and Atmosphere, Hobart, Australia
Thomas Schroeder
CSIRO, Oceans and Atmosphere, Hobart, Australia
Leonardo Laiolo
CSIRO, Oceans and Atmosphere, Hobart, Australia
Daniel Harrison
Southern Cross University, Coffs Harbour, Australia
Andrew D. L. Steven
CSIRO, Oceans and Atmosphere, Hobart, Australia
Viewed
Total article views: 4,112 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 09 Jul 2019)
HTML | XML | Total | Supplement | BibTeX | EndNote | |
---|---|---|---|---|---|---|
2,635 | 1,402 | 75 | 4,112 | 399 | 76 | 95 |
- HTML: 2,635
- PDF: 1,402
- XML: 75
- Total: 4,112
- Supplement: 399
- BibTeX: 76
- EndNote: 95
Total article views: 2,709 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 25 Sep 2020)
HTML | XML | Total | Supplement | BibTeX | EndNote | |
---|---|---|---|---|---|---|
2,124 | 542 | 43 | 2,709 | 221 | 34 | 58 |
- HTML: 2,124
- PDF: 542
- XML: 43
- Total: 2,709
- Supplement: 221
- BibTeX: 34
- EndNote: 58
Total article views: 1,403 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 09 Jul 2019)
HTML | XML | Total | Supplement | BibTeX | EndNote | |
---|---|---|---|---|---|---|
511 | 860 | 32 | 1,403 | 178 | 42 | 37 |
- HTML: 511
- PDF: 860
- XML: 32
- Total: 1,403
- Supplement: 178
- BibTeX: 42
- EndNote: 37
Viewed (geographical distribution)
Total article views: 4,112 (including HTML, PDF, and XML)
Thereof 3,765 with geography defined
and 347 with unknown origin.
Total article views: 2,709 (including HTML, PDF, and XML)
Thereof 2,504 with geography defined
and 205 with unknown origin.
Total article views: 1,403 (including HTML, PDF, and XML)
Thereof 1,261 with geography defined
and 142 with unknown origin.
Country | # | Views | % |
---|
Country | # | Views | % |
---|
Country | # | Views | % |
---|
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Cited
29 citations as recorded by crossref.
- eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef C. Ani et al. 10.1016/j.ecss.2023.108306
- Representing uncertainty in limited-area data assimilating ocean models P. Sandery et al. 10.1016/j.ocemod.2023.102301
- Biota‐mediated carbon cycling—A synthesis of biotic‐interaction controls on blue carbon L. Ren et al. 10.1111/ele.13940
- Nitrogen prediction in the Great Barrier Reef using finite element analysis with deep neural networks M. Jahanbakht et al. 10.1016/j.envsoft.2022.105311
- The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone F. Kroon et al. 10.1016/j.marpolbul.2023.115255
- The Development of a Floating Mono-Particle “Sun Shield” to Protect Corals from High Irradiance during Bleaching Conditions J. Scofield et al. 10.3390/jmse12101809
- Impact of catchment-derived nutrients and sediments on marine water quality on the Great Barrier Reef: An application of the eReefs marine modelling system M. Baird et al. 10.1016/j.marpolbul.2021.112297
- Spatio-temporal analysis of the environmental ranges and phenotypic traits of Zostera muelleri subpopulations in Central Queensland E. Andrews et al. 10.1016/j.ecss.2022.108191
- Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef C. Ani et al. 10.1016/j.ecolmodel.2023.110567
- Reversing ocean acidification along the Great Barrier Reef using alkalinity injection M. Mongin et al. 10.1088/1748-9326/ac002d
- Ecological Forecasting and Operational Information Systems Support Sustainable Ocean Management C. Sun et al. 10.3390/forecast4040057
- A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area A. Carter et al. 10.1038/s41598-021-01471-4
- Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale S. Trevathan-Tackett et al. 10.1016/j.scitotenv.2021.146819
- Multi-scale modeling of intensive macroalgae cultivation and marine nitrogen sequestration M. Zollmann et al. 10.1038/s42003-021-02371-z
- Impact of phytoplankton, CDOM, and suspended sediments on the vertical attenuation of light, changing heat content and circulation on a continental shelf: A modelling study of the Great Barrier Reef. A. Maggiorano et al. 10.1016/j.ocemod.2024.102465
- Control efforts of crown‐of‐thorns starfish outbreaks to limit future coral decline across the Great Barrier Reef C. Castro‐Sanguino et al. 10.1002/ecs2.4580
- Macroalgal cover on coral reefs: Spatial and environmental predictors, and decadal trends in the Great Barrier Reef K. Fabricius et al. 10.1371/journal.pone.0279699
- Trophic model closure influences ecosystem response to enrichment A. Omta et al. 10.1016/j.ecolmodel.2022.110183
- Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence V. Lambert et al. 10.1016/j.marpolbul.2021.112494
- Sediment Prediction in the Great Barrier Reef using Vision Transformer with finite element analysis M. Jahanbakht et al. 10.1016/j.neunet.2022.04.022
- Variations in Mid‐ to Late Holocene Nitrogen Supply to Northern Great Barrier Reef Halimeda Macroalgal Bioherms M. McNeil et al. 10.1029/2020PA003871
- Marine heatwaves in the Great Barrier Reef and Coral Sea: their mechanisms and impacts on shallow and mesophotic coral ecosystems Z. Huang et al. 10.1016/j.scitotenv.2023.168063
- A Flux-Form Semi-Lagrangian advection scheme for tracer transport on arbitrary meshes M. Herzfeld & D. Engwirda 10.1016/j.ocemod.2022.102140
- Concepts Toward a Global Mechanistic Mapping of Ocean Carbon Export E. Laurenceau‐Cornec et al. 10.1029/2023GB007742
- Dispersal of the pesticide diuron in the Great Barrier Reef J. Skerratt et al. 10.1016/j.scitotenv.2023.163041
- Should I stay or should I go? The influence of environmental conditions on green turtle residence time and outward transit in foraging areas E. Webster et al. 10.1007/s00227-024-04450-1
- Meteorological Satellite Observations Reveal Diurnal Exceedance of Water Quality Guideline Thresholds in the Coastal Great Barrier Reef L. Patricio-Valerio et al. 10.3390/rs15092335
- eReefs: An operational information system for managing the Great Barrier Reef A. Steven et al. 10.1080/1755876X.2019.1650589
- Effects of elevated temperature on microbial breakdown of seagrass leaf and tea litter biomass S. Trevathan-Tackett et al. 10.1007/s10533-020-00715-1
27 citations as recorded by crossref.
- eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef C. Ani et al. 10.1016/j.ecss.2023.108306
- Representing uncertainty in limited-area data assimilating ocean models P. Sandery et al. 10.1016/j.ocemod.2023.102301
- Biota‐mediated carbon cycling—A synthesis of biotic‐interaction controls on blue carbon L. Ren et al. 10.1111/ele.13940
- Nitrogen prediction in the Great Barrier Reef using finite element analysis with deep neural networks M. Jahanbakht et al. 10.1016/j.envsoft.2022.105311
- The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone F. Kroon et al. 10.1016/j.marpolbul.2023.115255
- The Development of a Floating Mono-Particle “Sun Shield” to Protect Corals from High Irradiance during Bleaching Conditions J. Scofield et al. 10.3390/jmse12101809
- Impact of catchment-derived nutrients and sediments on marine water quality on the Great Barrier Reef: An application of the eReefs marine modelling system M. Baird et al. 10.1016/j.marpolbul.2021.112297
- Spatio-temporal analysis of the environmental ranges and phenotypic traits of Zostera muelleri subpopulations in Central Queensland E. Andrews et al. 10.1016/j.ecss.2022.108191
- Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef C. Ani et al. 10.1016/j.ecolmodel.2023.110567
- Reversing ocean acidification along the Great Barrier Reef using alkalinity injection M. Mongin et al. 10.1088/1748-9326/ac002d
- Ecological Forecasting and Operational Information Systems Support Sustainable Ocean Management C. Sun et al. 10.3390/forecast4040057
- A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area A. Carter et al. 10.1038/s41598-021-01471-4
- Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale S. Trevathan-Tackett et al. 10.1016/j.scitotenv.2021.146819
- Multi-scale modeling of intensive macroalgae cultivation and marine nitrogen sequestration M. Zollmann et al. 10.1038/s42003-021-02371-z
- Impact of phytoplankton, CDOM, and suspended sediments on the vertical attenuation of light, changing heat content and circulation on a continental shelf: A modelling study of the Great Barrier Reef. A. Maggiorano et al. 10.1016/j.ocemod.2024.102465
- Control efforts of crown‐of‐thorns starfish outbreaks to limit future coral decline across the Great Barrier Reef C. Castro‐Sanguino et al. 10.1002/ecs2.4580
- Macroalgal cover on coral reefs: Spatial and environmental predictors, and decadal trends in the Great Barrier Reef K. Fabricius et al. 10.1371/journal.pone.0279699
- Trophic model closure influences ecosystem response to enrichment A. Omta et al. 10.1016/j.ecolmodel.2022.110183
- Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence V. Lambert et al. 10.1016/j.marpolbul.2021.112494
- Sediment Prediction in the Great Barrier Reef using Vision Transformer with finite element analysis M. Jahanbakht et al. 10.1016/j.neunet.2022.04.022
- Variations in Mid‐ to Late Holocene Nitrogen Supply to Northern Great Barrier Reef Halimeda Macroalgal Bioherms M. McNeil et al. 10.1029/2020PA003871
- Marine heatwaves in the Great Barrier Reef and Coral Sea: their mechanisms and impacts on shallow and mesophotic coral ecosystems Z. Huang et al. 10.1016/j.scitotenv.2023.168063
- A Flux-Form Semi-Lagrangian advection scheme for tracer transport on arbitrary meshes M. Herzfeld & D. Engwirda 10.1016/j.ocemod.2022.102140
- Concepts Toward a Global Mechanistic Mapping of Ocean Carbon Export E. Laurenceau‐Cornec et al. 10.1029/2023GB007742
- Dispersal of the pesticide diuron in the Great Barrier Reef J. Skerratt et al. 10.1016/j.scitotenv.2023.163041
- Should I stay or should I go? The influence of environmental conditions on green turtle residence time and outward transit in foraging areas E. Webster et al. 10.1007/s00227-024-04450-1
- Meteorological Satellite Observations Reveal Diurnal Exceedance of Water Quality Guideline Thresholds in the Coastal Great Barrier Reef L. Patricio-Valerio et al. 10.3390/rs15092335
2 citations as recorded by crossref.
Latest update: 23 Nov 2024
Short summary
For 20+ years, the Commonwealth Science Industry and Research Organisation (CSIRO) has been developing a biogeochemical (BGC) model for coupling with a hydrodynamic and sediment model for application in estuaries, coastal waters and shelf seas. This paper provides a full mathematical description (equations, parameters), model evaluation and access to the numerical code. The model is particularly suited to applications in shallow waters where benthic processes are critical to ecosystem function.
For 20+ years, the Commonwealth Science Industry and Research Organisation (CSIRO) has been...