A lattice-automaton bioturbation simulator with coupled physics, chemistry, and biology in marine sediments (eLABS v0.2)

Kanzaki, Yoshiki; Boudreau, Bernard P.; Kirtland Turner, Sandra; Ridgwell, Andy

doi:https://doi.org/10.5194/gmd-12-4469-2019

Articles | Volume 12, issue 10

https://doi.org/10.5194/gmd-12-4469-2019

© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.

https://doi.org/10.5194/gmd-12-4469-2019

© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.

Articles | Volume 12, issue 10

Model description paper

|

24 Oct 2019

Model description paper |

| 24 Oct 2019

A lattice-automaton bioturbation simulator with coupled physics, chemistry, and biology in marine sediments (eLABS v0.2)

Yoshiki Kanzaki, Bernard P. Boudreau, Sandra Kirtland Turner, and Andy Ridgwell

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Final revised paper (published on 24 Oct 2019)
Preprint (discussion started on 25 Apr 2019)

Interactive discussion

Status: closed

AC: Author comment | RC: Referee comment | SC: Short comment | EC: Editor comment

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- Supplement

RC1: 'review eLABS', Anonymous Referee #1, 17 May 2019
- AC1: 'Response to Referee #1', Yoshiki Kanzaki, 20 Aug 2019
RC2: 'review eLABS v0.1', Anonymous Referee #2, 05 Jun 2019
- AC2: 'Response to Referee #2', Yoshiki Kanzaki, 20 Aug 2019

Peer-review completion

AR: Author's response | RR: Referee report | ED: Editor decision

AR by Yoshiki Kanzaki on behalf of the Authors (20 Aug 2019) Author's response Manuscript

ED: Referee Nomination & Report Request started (26 Aug 2019) by Guy Munhoven

RR by Anonymous Referee #2 (13 Sep 2019)

ED: Publish subject to minor revisions (review by editor) (19 Sep 2019) by Guy Munhoven

AR by Yoshiki Kanzaki on behalf of the Authors (20 Sep 2019) Author's response Manuscript

ED: Publish as is (24 Sep 2019) by Guy Munhoven

AR by Yoshiki Kanzaki on behalf of the Authors (24 Sep 2019)

Short summary

This paper provides eLABS, an extension of the lattice-automaton bioturbation simulator LABS. In our new model, the benthic animal behavior interacts and changes dynamically with oxygen and organic matter concentrations and the water flows caused by benthic animals themselves, in a 2-D marine-sediment grid. The model can address the mechanisms behind empirical observations of bioturbation based on the interactions between physical, chemical and biological aspects of marine sediment.