Articles | Volume 11, issue 7
https://doi.org/10.5194/gmd-11-2649-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-11-2649-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
09 Jul 2018
Model description paper |
| 09 Jul 2018
| 09 Jul 2018
OMEN-SED 1.0: a novel, numerically efficient organic matter sediment diagenesis module for coupling to Earth system models
BRIDGE, School of Geographical Sciences, University of Bristol, Clifton, Bristol BS8 1SS, UK
Department of Earth Sciences, University of California, Riverside, CA 92521, USA
Sandra Arndt
BRIDGE, School of Geographical Sciences, University of Bristol, Clifton, Bristol BS8 1SS, UK
BGeosys, Department Geoscience, Environment & Society (DGES), Université Libre de Bruxelles, Brussels, Belgium
Stuart Daines
Earth System Science, University of Exeter, North Park Road, Exeter EX4 4QE, UK
Pierre Regnier
BGeosys, Department Geoscience, Environment & Society (DGES), Université Libre de Bruxelles, Brussels, Belgium
Andy Ridgwell
BRIDGE, School of Geographical Sciences, University of Bristol, Clifton, Bristol BS8 1SS, UK
Department of Earth Sciences, University of California, Riverside, CA 92521, USA
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Cited
23 citations as recorded by crossref.
- End-Permian marine extinction due to temperature-driven nutrient recycling and euxinia D. Hülse et al. 10.1038/s41561-021-00829-7
- Model of Early Diagenesis in the Upper Sediment with Adaptable complexity – MEDUSA (v. 2): a time-dependent biogeochemical sediment module for Earth system models, process analysis and teaching G. Munhoven 10.5194/gmd-14-3603-2021
- Transfer efficiency of organic carbon in marine sediments J. Bradley et al. 10.1038/s41467-022-35112-9
- What global biogeochemical consequences will marine animal–sediment interactions have during climate change? T. Bianchi et al. 10.1525/elementa.2020.00180
- A model for marine sedimentary carbonate diagenesis and paleoclimate proxy signal tracking: IMP v1.0 Y. Kanzaki et al. 10.5194/gmd-14-5999-2021
- Quantifying Importance of Macrobenthos for Benthic‐Pelagic Coupling in a Temperate Coastal Shelf Sea W. Zhang et al. 10.1029/2020JC016995
- Carbon Fluxes in the Coastal Ocean: Synthesis, Boundary Processes, and Future Trends M. Dai et al. 10.1146/annurev-earth-032320-090746
- Iron and sulfur cycling in the cGENIE.muffin Earth system model (v0.9.21) S. van de Velde et al. 10.5194/gmd-14-2713-2021
- Trickle and Treat? The Critical Role of Marine‐Terminating Glaciers as Icy Macronutrient Pumps in Polar Regions J. Hawkings 10.1029/2021JG006598
- OMEN-SED(-RCM) (v1.1): a pseudo-reactive continuum representation of organic matter degradation dynamics for OMEN-SED P. Pika et al. 10.5194/gmd-14-7155-2021
- Subsurface Redox Interactions Regulate Ebullitive Methane Flux in Heterogeneous Mississippi River Deltaic Wetland J. Wang et al. 10.1029/2023MS003762
- Microbial Controls on the Biogeochemical Dynamics in the Subsurface M. Thullner & P. Regnier 10.2138/rmg.2019.85.9
- Sources and Fluxes of Organic Carbon and Energy to Microorganisms in Global Marine Sediments J. Bradley et al. 10.3389/fmicb.2022.910694
- Mitigation of Extreme Ocean Anoxic Event Conditions by Organic Matter Sulfurization D. Hülse et al. 10.1029/2018PA003470
- RADIv1: a non-steady-state early diagenetic model for ocean sediments in Julia and MATLAB/GNU Octave O. Sulpis et al. 10.5194/gmd-15-2105-2022
- Regional and Global Patterns of Apparent Organic Matter Reactivity in Marine Sediments P. Pika et al. 10.1029/2022GB007636
- Assessing the impact of bioturbation on sedimentary isotopic records through numerical models D. Hülse et al. 10.1016/j.earscirev.2022.104213
- The fate of organic carbon in marine sediments - New insights from recent data and analysis D. LaRowe et al. 10.1016/j.earscirev.2020.103146
- New insights into large-scale trends of apparent organic matter reactivity in marine sediments and patterns of benthic carbon transformation F. Freitas et al. 10.5194/bg-18-4651-2021
- SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes J. Du 10.5194/gmd-16-5865-2023
- Widespread energy limitation to life in global subseafloor sediments J. Bradley et al. 10.1126/sciadv.aba0697
- Are seep carbonates quantitative proxies of CH4 leakage? Modeling the influence of sulfate reduction and anaerobic oxidation of methane on pH and carbonate precipitation J. Blouet et al. 10.1016/j.chemgeo.2021.120254
- All aboard! Earth system investigations with the CH2O-CHOO TRAIN v1.0 T. Kukla et al. 10.5194/gmd-16-5515-2023
23 citations as recorded by crossref.
- End-Permian marine extinction due to temperature-driven nutrient recycling and euxinia D. Hülse et al. 10.1038/s41561-021-00829-7
- Model of Early Diagenesis in the Upper Sediment with Adaptable complexity – MEDUSA (v. 2): a time-dependent biogeochemical sediment module for Earth system models, process analysis and teaching G. Munhoven 10.5194/gmd-14-3603-2021
- Transfer efficiency of organic carbon in marine sediments J. Bradley et al. 10.1038/s41467-022-35112-9
- What global biogeochemical consequences will marine animal–sediment interactions have during climate change? T. Bianchi et al. 10.1525/elementa.2020.00180
- A model for marine sedimentary carbonate diagenesis and paleoclimate proxy signal tracking: IMP v1.0 Y. Kanzaki et al. 10.5194/gmd-14-5999-2021
- Quantifying Importance of Macrobenthos for Benthic‐Pelagic Coupling in a Temperate Coastal Shelf Sea W. Zhang et al. 10.1029/2020JC016995
- Carbon Fluxes in the Coastal Ocean: Synthesis, Boundary Processes, and Future Trends M. Dai et al. 10.1146/annurev-earth-032320-090746
- Iron and sulfur cycling in the cGENIE.muffin Earth system model (v0.9.21) S. van de Velde et al. 10.5194/gmd-14-2713-2021
- Trickle and Treat? The Critical Role of Marine‐Terminating Glaciers as Icy Macronutrient Pumps in Polar Regions J. Hawkings 10.1029/2021JG006598
- OMEN-SED(-RCM) (v1.1): a pseudo-reactive continuum representation of organic matter degradation dynamics for OMEN-SED P. Pika et al. 10.5194/gmd-14-7155-2021
- Subsurface Redox Interactions Regulate Ebullitive Methane Flux in Heterogeneous Mississippi River Deltaic Wetland J. Wang et al. 10.1029/2023MS003762
- Microbial Controls on the Biogeochemical Dynamics in the Subsurface M. Thullner & P. Regnier 10.2138/rmg.2019.85.9
- Sources and Fluxes of Organic Carbon and Energy to Microorganisms in Global Marine Sediments J. Bradley et al. 10.3389/fmicb.2022.910694
- Mitigation of Extreme Ocean Anoxic Event Conditions by Organic Matter Sulfurization D. Hülse et al. 10.1029/2018PA003470
- RADIv1: a non-steady-state early diagenetic model for ocean sediments in Julia and MATLAB/GNU Octave O. Sulpis et al. 10.5194/gmd-15-2105-2022
- Regional and Global Patterns of Apparent Organic Matter Reactivity in Marine Sediments P. Pika et al. 10.1029/2022GB007636
- Assessing the impact of bioturbation on sedimentary isotopic records through numerical models D. Hülse et al. 10.1016/j.earscirev.2022.104213
- The fate of organic carbon in marine sediments - New insights from recent data and analysis D. LaRowe et al. 10.1016/j.earscirev.2020.103146
- New insights into large-scale trends of apparent organic matter reactivity in marine sediments and patterns of benthic carbon transformation F. Freitas et al. 10.5194/bg-18-4651-2021
- SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes J. Du 10.5194/gmd-16-5865-2023
- Widespread energy limitation to life in global subseafloor sediments J. Bradley et al. 10.1126/sciadv.aba0697
- Are seep carbonates quantitative proxies of CH4 leakage? Modeling the influence of sulfate reduction and anaerobic oxidation of methane on pH and carbonate precipitation J. Blouet et al. 10.1016/j.chemgeo.2021.120254
- All aboard! Earth system investigations with the CH2O-CHOO TRAIN v1.0 T. Kukla et al. 10.5194/gmd-16-5515-2023
Latest update: 01 Apr 2025
Short summary
We present a 1-D analytical diagenetic model resolving organic matter (OM) cycling and the associated biogeochemical dynamics in marine sediments designed to be coupled to Earth system models (ESMs). The reaction network accounts for the most important reactions associated with OM dynamics. The coupling is described and the OM degradation rate constant is tuned. Various observations, such as pore water profiles, sediment water interface fluxes and OM content, are reproduced with good accuracy.
We present a 1-D analytical diagenetic model resolving organic matter (OM) cycling and the...
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