the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Sunburned plankton: Ultraviolet radiation inhibition of phytoplankton photosynthesis in the Community Earth System Model version 2
Abstract. Ultraviolet (UV) radiation can damage DNA and kill cells. We use laboratory and observational studies of the harmful effect of UV radiation on marine photosynthesizers to inform the implementation of a UV radiation damage function for phytoplankton photosynthesis in a modified version of the Community Earth System Model version 2 (CESM2-UVphyto). CESM2-UVphyto is capable of simulating UV inhibition of photosynthesis among modelled phytoplankton and ocean column 5 penetration of UV-A and UV-B radiation. We conduct a series of simulations with CESM2-UVphyto using the Marine Biogeochemistry Library (MARBL) ecosystem model to calibrate estimates of the sensitivity of phytoplankton productivity to UV radiation. Results indicate that increased UV radiation shifts the vertical distribution of phytoplankton biomass and productivity deeper into the column, causes a moderate decline in total global productivity, and changes phytoplankton community structure to favor diatoms. Our new CESM2-UVphyto model configuration can be used to quantify the potential ocean biogeochemical 10 and ecosystem impacts resulting from events that disturb the stratospheric ozone layer, such as an asteroid impact, a volcanic eruption, a nuclear war, and stratospheric aerosol injection-based geoengineering.
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Status: open (until 19 Dec 2024)
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RC1: 'Comment on gmd-2024-94', Patrick Neale, 17 Oct 2024
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See attached pdf
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CEC1: 'Comment on gmd-2024-94', Juan Antonio Añel, 29 Oct 2024
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Dear authors,
Unfortunately, after checking your manuscript, it has come to our attention that it does not comply with our "Code and Data Policy".
https://www.geoscientific-model-development.net/policies/code_and_data_policy.html
You have archived your code on GitHub. However, GitHub is not a suitable repository for scientific publication. GitHub itself instructs authors to use other long-term archival and publishing alternatives, such as Zenodo. Therefore, please publish your code in one of the appropriate repositories and reply to this comment with the relevant information (link and a permanent identifier for it (e.g. DOI)) as soon as possible, as we can not accept manuscripts in Discussions that do not comply with our policy. Therefore, the current situation with your manuscript is irregular.In this way, if you do not fix this problem, we will have to reject your manuscript for publication in our journal.
Also, you must include the modified 'Code and Data Availability' section in a potentially reviewed manuscript, the DOI of the code. Also, for the Python notebook there is not license listed in the GitHub repository. If you do not include a license, despite what you state in the README file, the code remains your property. Therefore, when uploading the notebook to the new repository, please, include a license for it. You could want to choose a free software/open-source (FLOSS) license. We recommend the GPLv3. You simply need to include the file 'https://www.gnu.org/licenses/gpl-3.0.txt' as LICENSE.txt with your code. Also, you can choose other options that Zenodo provides: GPLv2, Apache License, MIT License, etc.
Juan A. Añel
Geosci. Model Dev. Executive Editor  ÂCitation: https://doi.org/10.5194/gmd-2024-94-CEC1 -
AC1: 'Reply on CEC1 - updated zenodo archive', Joshua Coupe, 01 Nov 2024
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Dear Chief Editor,
We have archived the github repository of CESM2-UVphyto code onto Zenodo with a new identifier: 10.5281/zenodo.14025743 .
The previous version of code to create the figures has been moved into this archive as well with a new LICENSE.txt file including a GNU General Public License v3.0. All simulation data is still included in the previous archive with the identifier DOI: 10.5281/zenodo.11127431.
An updated version of the Code and Data Availability section reads as follows:
The code modifications to the CESM and Jupyter notebook entitled manuscript_figures.ipynb to generate all figures are stored on Zenodo at DOI: 10.5281/zenodo.14025743. The data used to produce figures in the main text and supplemental is archived on Zenodo at DOI: 10.5281/zenodo.11127431.
Sincerely,
Joshua Coupe and co-authors
Citation: https://doi.org/10.5194/gmd-2024-94-AC1
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AC1: 'Reply on CEC1 - updated zenodo archive', Joshua Coupe, 01 Nov 2024
reply
Data sets
Climate model output for paper describing CESM2-UVphyto. Joshua Livingston Coupe https://doi.org/10.5281/zenodo.11127431
Model code and software
CESM2-UVphyto Joshua Coupe https://github.com/coupewx/CESM2-UV/tree/coupewx-cesm2-uvphyto-01
Interactive computing environment
Manuscript figures Joshua Coupe https://github.com/coupewx/CESM2-UV/blob/master/notebooks/manuscript_figures.ipynb
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