Preprints
https://doi.org/10.5194/gmd-2022-217
https://doi.org/10.5194/gmd-2022-217
Submitted as: review and perspective paper
29 Sep 2022
Submitted as: review and perspective paper | 29 Sep 2022
Status: this preprint is currently under review for the journal GMD.

Reproducible and Relocatable Regional Ocean Modelling: Fundamentals and practices

Jeff A. Polton1, James Harle1, Jason Holt1, Anna Katavouta1, Dale Partridge2, Jenny Jardine1, Sarah Wakelin1, Julia Rulent1, Anthony Wise1, Katherine Hutchinson3, David Byrne1, Diego Bruciaferri4, Enda O'Dea4, Michela De Dominicis1, Pierre Mathiot3, Andrew Coward1, Andrew Yool1, Julien Palmieri1, Gennadi Lessin2, Gabriela Mayorga-Adame1, Valerie Le Guennec1,5, Alex Arnold4, and Clement Rousset3 Jeff A. Polton et al.
  • 1National Oceanography Centre, UK
  • 2Plymouth Marine Laboratory, UK
  • 3Laboratoire LOCEAN/IPSL, France
  • 4Met Office, UK
  • 5Pusan National University, South Korea

Abstract. In response to an increasing demand for bespoke or tailored regional ocean modelling configurations, we outline fundamental principles and practices that can expedite the process to generate new configurations. The paper develops the principle of Reproducibility and advocates adherence by presenting benefits to the community and user. The elements to this principle are reproducible workflows and standardised assessment, with additional effort over existing working practices being balanced against the added value generated. The paper then decomposes the complex build process, for a new regional ocean configuration, into stages and presents guidance, advice and insight on each component. This advice is compiled from across the user community, is presented in the context of NEMOv4, though aims to transcend NEMO version. Detail and region specific worked examples are linked in companion repositories and DOIs. The aim is to broaden the user community skill base, and to accelerate development of new configurations in order to increase available time exploiting the configurations.

Jeff A. Polton et al.

Status: open (until 09 Dec 2022)

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • RC1: 'Comment on gmd-2022-217', Anonymous Referee #1, 22 Nov 2022 reply
  • RC2: 'Comment on gmd-2022-217', Anonymous Referee #2, 29 Nov 2022 reply

Jeff A. Polton et al.

Data sets

SANH: South Asian Nitrogen Hub Regional Ocean Modelling Biogeochemistry Partridge, D. https://doi.org/10.5281/zenodo.6907302

NEMO Demonstrator: Worked Example of WED025 Mathiot, P. and Hutchinson, K https://doi.org/10.5281/ZENODO.6817000

NOC-MSM / Regional-NEMO-Medusa Le Guennec, V. and Holt, J. https://github.com/NOC-MSM/Regional-NEMO-Medusa/

ACCORD: Addressing Challenges of Coastal Communities through Ocean Research for Developing Economies Regional Ocean Modelling Biogeochemistry Partridge, D. https://doi.org/10.5281/zenodo.6940832

JMMP-Group/SEVERN-SWOT De Dominicis, M., Polton, J. A., Payo, M. P., and Brown, J. https://doi.org/10.5281/zenodo.6469990

NOC-MSM/SEAsia: SEAsia Polton, J., Harle, J., de Dominicis, Michela, and Katavouta, A https://doi.org/10.5281/zenodo.6483231

NOC-MSM/Belize_workshop: Belize Workshop (Regional NEMO Ocean in Docker Container Mayorga Adame, C., Polton, J. A., Acevedo, S., and Holt, J https://doi.org/10.5281/ZENODO.6451433

NOC-MSM/SANH: South Asian Nitrogen Hub Regional Ocean Modelling. NEMOv3.6 Jardine, J., Katavouta, A., Polton, J., Holt, J., and Wakelin, S https://doi.org/10.5281/ZENODO.6423248

Jeff A. Polton et al.

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Short summary
The aim is to increase the capacity of the modelling community to respond to societally important questions that require ocean modelling. The concept of Reproducibility for regional ocean modelling is developed: advocating methods for reproducible workflows and standardised methods of assessment. Then, targeting the NEMO framework, we give practical advice and worked examples; highlighting key considerations that will expedite development cycle and up skill the community user community.