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  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-19-6143-2026</article-id><title-group><article-title>DeepMIP-Eocene-p2: Experimental design for Phase 2 of the  early Eocene component of the CMIP7/PMIP7 Deep-time  Model Intercomparison Project (DeepMIP-Eocene)</article-title><alt-title>DeepMIP-Eocene Phase 2 experimental design</alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Lunt</surname><given-names>Daniel J.</given-names></name>
          <email>d.j.lunt@bristol.ac.uk</email>
        <ext-link>https://orcid.org/0000-0003-3585-6928</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Wright</surname><given-names>Nicky M.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5600-3193</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Vaes</surname><given-names>Bram</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6062-6804</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Salzmann</surname><given-names>Ulrich</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5598-5327</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Rae</surname><given-names>James W. B.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3904-2526</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Hickler</surname><given-names>Thomas</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Hutchinson</surname><given-names>David K.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9385-4782</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Brugger</surname><given-names>Julia</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4172-0464</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Zhu</surname><given-names>Jiang</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0908-5130</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Steinig</surname><given-names>Sebastian</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff10">
          <name><surname>Meckler</surname><given-names>A. Nele</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff11">
          <name><surname>Inglis</surname><given-names>Gordon N.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0032-4668</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff11">
          <name><surname>Evans</surname><given-names>David</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8685-671X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff12">
          <name><surname>de Boer</surname><given-names>Agatha M.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Otto-Bliesner</surname><given-names>Bette L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1911-1598</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff13">
          <name><surname>Burls</surname><given-names>Natalie</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6950-3808</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff14">
          <name><surname>Zhang</surname><given-names>Yurui</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff15">
          <name><surname>Sluijs</surname><given-names>Appy</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2382-0215</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff16">
          <name><surname>Reichgelt</surname><given-names>Tammo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8652-5489</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff17">
          <name><surname>Niezgodzki</surname><given-names>Igor</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6746-8332</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Meissner</surname><given-names>Katrin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0716-7415</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff18">
          <name><surname>Ladant</surname><given-names>Jean-Baptiste</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6214-0242</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff19">
          <name><surname>Kelemen</surname><given-names>Fanni D.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6118-4945</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff20">
          <name><surname>Huber</surname><given-names>Matthew</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2771-9977</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff21">
          <name><surname>Greenwood</surname><given-names>David R.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8569-9695</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff22">
          <name><surname>Green</surname><given-names>Mattias</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5090-1040</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff23">
          <name><surname>Boscolo-Galazzo</surname><given-names>Flavia</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5146-5321</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff24">
          <name><surname>Blau</surname><given-names>Manuel Tobias</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4649-6040</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff25">
          <name><surname>Baatsen</surname><given-names>Michiel</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0123-7005</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>School of Geographical Sciences, University of Bristol, Bristol, UK</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>EarthByte Group, School of Geosciences, The University of Sydney, Sydney, Australia</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milan, Italy</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>School of Geography and Natural Sciences, Northumbria University, Newcastle upon Tyne, UK</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Senckenberg Biodiversity and Climate Research Centre, Germany, Department of Physical Geography,  Geosciences, Goethe University, Frankfurt am Main, Germany</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Climate Change Research Centre, University of New South Wales, Sydney, NSW, Australia</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Geo- and Environmental Research Center, University of Tübingen, Tübingen, Germany</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>Climate and Global Dynamics Laboratory, NSF National Center for Atmospheric Research, Boulder, 80305, USA</institution>
        </aff>
        <aff id="aff10"><label>10</label><institution>Department of Earth Science, Bjerknes Centre for Climate Research, Bergen, Norway</institution>
        </aff>
        <aff id="aff11"><label>11</label><institution>School of Ocean and Earth Science, University of Southampton, Southampton, UK</institution>
        </aff>
        <aff id="aff12"><label>12</label><institution>Department of Geological Sciences, Stockholm University, Stockholm, Sweden</institution>
        </aff>
        <aff id="aff13"><label>13</label><institution>Atmospheric, Oceanic and Earth Sciences Department, George Mason University, Fairfax, USA</institution>
        </aff>
        <aff id="aff14"><label>14</label><institution>Department of Geological Oceanography, Xiamen University, Xiamen, China</institution>
        </aff>
        <aff id="aff15"><label>15</label><institution>Department of Earth Sciences, Utrecht University, Utrecht, the Netherlands</institution>
        </aff>
        <aff id="aff16"><label>16</label><institution>Department of Earth Sciences, University of Conneticut, Conneticut, USA</institution>
        </aff>
        <aff id="aff17"><label>17</label><institution>Institute of Geological Sciences, Polish Academy of Sciences, Kraków, Poland</institution>
        </aff>
        <aff id="aff18"><label>18</label><institution>Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL,  CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France</institution>
        </aff>
        <aff id="aff19"><label>19</label><institution>Institute for Atmospheric and Environmental Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany</institution>
        </aff>
        <aff id="aff20"><label>20</label><institution>Department of Earth, Atmospheric, and Planetary Sciences, Purdue University, Purdue, USA</institution>
        </aff>
        <aff id="aff21"><label>21</label><institution>Department of Biology, Brandon University, Brandon, Canada</institution>
        </aff>
        <aff id="aff22"><label>22</label><institution>School of Ocean Sciences, Bangor University, Bangor, UK</institution>
        </aff>
        <aff id="aff23"><label>23</label><institution>MARUM, University of Bremen, Bremen, Germany</institution>
        </aff>
        <aff id="aff24"><label>24</label><institution>School of Earth and Environmental Sciences, Seoul National University, Seoul 08826, South Korea</institution>
        </aff>
        <aff id="aff25"><label>25</label><institution>IMAU, Utrecht University, Department of Physics, Utrecht, the Netherlands</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Daniel J. Lunt (d.j.lunt@bristol.ac.uk)</corresp></author-notes><pub-date><day>9</day><month>July</month><year>2026</year></pub-date>
      
      <volume>19</volume>
      <issue>13</issue>
      <fpage>6143</fpage><lpage>6166</lpage>
      <history>
        <date date-type="received"><day>9</day><month>December</month><year>2025</year></date>
           <date date-type="rev-request"><day>28</day><month>January</month><year>2026</year></date>
           <date date-type="rev-recd"><day>22</day><month>June</month><year>2026</year></date>
           <date date-type="accepted"><day>23</day><month>June</month><year>2026</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2026 Daniel J. Lunt et al.</copyright-statement>
        <copyright-year>2026</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026.html">This article is available from https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d2e515">Warm, high-CO<sub>2</sub> climates of Earth's past provide an opportunity to evaluate climate models under extreme forcing, and to explore mechanisms that lead to such warmth.  One such time period is the early Eocene (<inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">56</mml:mn></mml:mrow></mml:math></inline-formula>–41 million years ago), when global mean surface temperatures were <inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> °C higher than preindustrial, and CO<sub>2</sub> concentrations were <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> ppmv. In this paper we present the experimental design for Phase 2 of the Eocene component of the Deep-time Model Intercomparison project (DeepMIP-Eocene-p2). The aim is to provide a framework for modelling groups to carry out a common set of simulations, thereby facilitating exploration of inter-model dependencies. The focus is on the early Eocene Climatic Optimum (EECO, <inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">53.3</mml:mn></mml:mrow></mml:math></inline-formula>–49.1 million years ago). Relative to Phase 1 of DeepMIP-Eocene, we provide a new paleogeography (topography, bathymetry) derived from several recent independent reconstructions that focused on different regions, a new vegetation distribution derived by merging paleobotanical data with vegetation model simulations, and a new CO<sub>2</sub> specification derived from recent re-evaluations of proxy data.  The core set of simulations consists of a preindustrial control, an abrupt increase to <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula> preindustrial CO<sub>2</sub> concentration from this preindustrial control, a standard control EECO simulation at <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula> preindustrial CO<sub>2</sub> concentration, and an EECO simulation with preindustrial CO<sub>2</sub> concentration. In addition to these core simulations, we suggest a suite of optional sensitivity studies, which allow the impact of various factors to be explored, such as topography/bathymetry, greenhouse gases, land-surface parameters, astronomical and solar forcings, and internal model parameters. The updated boundary conditions and guidance on initialisation and spinup in Phase 2 will allow more robust model-data comparisons, more accurate insights into mechanisms influencing early Eocene climate, and increased relevance for informing future climate change projections.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Natural Environment Research Council</funding-source>
<award-id>NE/N006828/1</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d2e643">The study of paleoclimates, and in particular the study of paleoclimates using climate models, generally has two main motivations. First, to study the past climate of our Earth from a purely “blue-skies” curiosity-driven desire to better understand the planet that we live on, in particular the forcings and mechanisms/feedbacks that determine past climate change – because, as George Mallory reportedly said in regard to climbing Mount Everest, “it is there” <xref ref-type="bibr" rid="bib1.bibx70" id="paren.1"/>. Second, to leverage information from Earth's past climates in order to better understand and predict future climates, so to inform political decisions regarding climate-related policy and to enable society to better adapt to future climate change. The Deep-time Modelling Intercomparison Project (DeepMIP) is driven by these two motivations, and is dedicated to conceiving, designing, carrying out, analysing, and disseminating, an international effort to improve our understanding of deep-time climates. “Deep-time” is here defined as any time period older than the Pliocene period, i.e. older than 5.3 million years ago. The objectives of DeepMIP are: <list list-type="bullet"><list-item>
      <p id="d2e651">to foster closer links between the palaeoclimate modelling and data communities,</p></list-item><list-item>
      <p id="d2e655">to design experiments for the MIP, through discussion with both model and data communities,</p></list-item><list-item>
      <p id="d2e659">to carry out such simulations with a wide range of models,</p></list-item><list-item>
      <p id="d2e663">to create, collate, and synthesise datasets where appropriate to enable meaningful model-data comparisons,</p></list-item><list-item>
      <p id="d2e667">to analyse the results with the aims of evaluating the models, understanding the reasons behind the model-model and model-data differences, and, where possible, providing suggestions for model improvements; and</p></list-item><list-item>
      <p id="d2e671">to carry out the above in such a way as to facilitate contribution to the Intergovernmental Panel on Climate Change (IPCC).</p></list-item></list></p>
      <p id="d2e674">DeepMIP is a part of the Paleoclimate Modelling Intercomparison Project (PMIP), which itself is a part of the Coupled Model Intercomparison Project (CMIP), which is a project of the World Climate Research Program (WCRP). Together with the Pliocene Model Intercomparision Project (PlioMIP) effort <xref ref-type="bibr" rid="bib1.bibx32" id="paren.2"/>, DeepMIP-Eocene <xref ref-type="bibr" rid="bib1.bibx50" id="paren.3"/> and DeepMIP-Miocene <xref ref-type="bibr" rid="bib1.bibx15" id="paren.4"/> extend PMIP efforts back beyond the Quaternary, to sample the full range of paleoclimate states that are comparable, at least in terms of CO<sub>2</sub> concentration, with the projected Shared Socioeconomic Pathways <xref ref-type="bibr" rid="bib1.bibx57" id="paren.5"><named-content content-type="pre">SSPs;</named-content></xref>.</p>

      <fig id="F1" specific-use="star"><label>Figure 1</label><caption><p id="d2e702">Deep ocean temperature through the Cenozoic, derived from: (i) the composite benthic foraminifera <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O record <xref ref-type="bibr" rid="bib1.bibx87" id="paren.6"/>, converted to temperature following <xref ref-type="bibr" rid="bib1.bibx24" id="text.7"/> including a pH correction; coloured line, and (ii) the clumped isotopic composition of benthic foraminifera <xref ref-type="bibr" rid="bib1.bibx52" id="paren.8"/>, using the calibration of <xref ref-type="bibr" rid="bib1.bibx54" id="text.9"/> and updated to the I-CDES scale <xref ref-type="bibr" rid="bib1.bibx55" id="paren.10"/>; white circles. The early Eocene Climatic Optimum (EECO; <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">53.3</mml:mn></mml:mrow></mml:math></inline-formula>–49.1 million years ago as defined by <xref ref-type="bibr" rid="bib1.bibx36" id="altparen.11"/>) is highlighted, which is the focus of DeepMIP-Eocene Phase 2. The colour scale of the <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O-derived deep ocean temperature record transitions from red to blue at the approximate value associated with the Eocene–Oligocene Transition, marking the onset of major Antarctic ice growth.</p></caption>
        <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f01.png"/>

      </fig>

      <p id="d2e763">Here, in preparation for CMIP7/PMIP7 <xref ref-type="bibr" rid="bib1.bibx22" id="paren.12"/>, we focus on the Eocene component of DeepMIP: DeepMIP-Eocene.  The Eocene (56.0 to 33.9 million years ago), is a geological epoch that is characterised by a substantially warmer climate than modern (Fig. <xref ref-type="fig" rid="F1"/>). Within the Eocene, much previous focus in DeepMIP has been on the early Eocene Climatic Optimum (EECO); <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">53.3</mml:mn></mml:mrow></mml:math></inline-formula>–49.1 million years ago <xref ref-type="bibr" rid="bib1.bibx36" id="paren.13"/>.  Proxies indicate global mean near-surface temperatures about 10–17 °C higher than preindustrial <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx24" id="paren.14"/>, CO<sub>2</sub> concentrations of <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> ppmv <xref ref-type="bibr" rid="bib1.bibx5" id="paren.15"><named-content content-type="post">see also Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS1"/></named-content></xref>, and no ice sheets. Proxies also indicate wetter high latitudes than modern <xref ref-type="bibr" rid="bib1.bibx19 bib1.bibx86" id="paren.16"/>, and a vegetation consistent with a generally warmer and wetter climate than modern, including a poleward expansion of temperate and warm-temperate forests in regions today covered by tundra shrub and boreal forests <xref ref-type="bibr" rid="bib1.bibx84" id="paren.17"/>. In the context of the Phanerozoic (last 540 million years), the paleogeography at this time was relatively similar to today, with distinct Atlantic, Indian, and Pacific oceans, and with the modern continents recognisable in terms of their relative positioning (see Fig. <xref ref-type="fig" rid="F3"/>). However, the paleogeography differed from the modern in several respects, including an open Panama Seaway, constricted Tasman seaway and Drake passage, an open Tethys seaway, India disconnected from southeast Asia, and changes to the heights and configurations of multiple mountain ranges <xref ref-type="bibr" rid="bib1.bibx35" id="paren.18"><named-content content-type="post">and references therein</named-content></xref>. Despite these differences in paleogeography, the climate of the early Eocene has been compared to possible future climates under very high emissions scenarios <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx6" id="paren.19"/>, and has been used to constrain Equilibrium Climate Sensitivity <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx39" id="paren.20"><named-content content-type="pre">ECS, e.g.</named-content></xref>. As such, the EECO provides a window to a substantially warmer world than today. It provides an opportunity to evaluate models, to use models to inform the interpretation of proxy records, and to provide mechanistic understanding of climate feedbacks in a warm world.</p>
      <p id="d2e835">The first phase of DeepMIP-Eocene was based around a model experimental design in which paleogeography, CO<sub>2</sub>, and vegetation boundary conditions were prescribed <xref ref-type="bibr" rid="bib1.bibx49" id="paren.21"/>, informed to a large extent by the work of <xref ref-type="bibr" rid="bib1.bibx35" id="text.22"/>. Eight modelling groups submitted simulations to the first phase, the results from which are available in the DeepMIP model dataset <xref ref-type="bibr" rid="bib1.bibx79" id="paren.23"/> and have been discussed in multiple studies, which are summarised very briefly here. <xref ref-type="bibr" rid="bib1.bibx50" id="text.24"/> presented an overview of the large-scale temperatures, partitioning the modelled global mean surface temperature (GMST) and temperature gradients to different mechanisms through an energy-balance analysis, finding that a subset of the models showed results that were consistent with the proxies in terms of GMST, temperature gradient, and CO<sub>2</sub>, and finding that non-CO<sub>2</sub> boundary conditions contributed between 3–5 °C to Eocene warmth. <xref ref-type="bibr" rid="bib1.bibx42" id="text.25"/> found that these non-CO<sub>2</sub> boundary conditions also played a key role in the meridional heat transport, leading to more heat transported to the South Pole by the ocean, and more heat transported northwards in the northern mid-latitudes by transient atmospheric eddies. <xref ref-type="bibr" rid="bib1.bibx27" id="text.26"/> found a strong 1–1 coupling between deep ocean and surface air temperature change across the ensemble, and found a best fit with deep ocean temperature proxies at 6<inline-formula><mml:math id="M24" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> preindustrial CO<sub>2</sub> concentration. <xref ref-type="bibr" rid="bib1.bibx24" id="text.27"/> supported this finding, indicating that changes in deep ocean temperatures in general correlate well with changes in surface temperature. <xref ref-type="bibr" rid="bib1.bibx19" id="text.28"/> explored the large-scale modelled hydrology, finding a thermodynamically-dominated hydrological response leading to wettening in the mid and high latitudes, drier conditions in the subtropics, and wettening in the deep tropics, and finding that those models with the weakest meridional temperature gradients were in best agreement with precipitation proxies.  Regional precipitation patterns and model-data comparisons were explored in Africa by <xref ref-type="bibr" rid="bib1.bibx90" id="text.29"/> and in Australia by <xref ref-type="bibr" rid="bib1.bibx71" id="text.30"/>. Both these studies estimated the CO<sub>2</sub> concentration for which the model simulations best agreed with the proxy vegetation data; <xref ref-type="bibr" rid="bib1.bibx71" id="text.31"/> found best  agreement at <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mn mathvariant="normal">6</mml:mn><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula>, in contrast to <xref ref-type="bibr" rid="bib1.bibx90" id="text.32"/> who found best agreement at much lower values (as low as <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula>); this apparent discrepancy is yet to be explored in detail. <xref ref-type="bibr" rid="bib1.bibx1" id="text.33"/> showed that the modelled early Eocene Asian wet season was weaker than present day in the ensemble, and attributed this to the reduced Tibetan Plateau, and that this dominated over the response to the CO<sub>2</sub> forcing.  Furthermore, by carrying out additional paleogeographic sensitivity studies, <xref ref-type="bibr" rid="bib1.bibx98" id="text.34"/> showed that the East Asian precipitation was determined to a large extent by the Southeast Mountains. <xref ref-type="bibr" rid="bib1.bibx53" id="text.35"/> showed that proxies indicate monsoonal precipitation in the Asian continental interior during the early Eocene, but that this is not reproduced to such an extent in the DeepMIP-Eocene model results. <xref ref-type="bibr" rid="bib1.bibx96" id="text.36"/> found that all the models were dominated by strong deepwater formation in the Southern Ocean, at locations determined by Southern Ocean gateway geometry, but that one model also showed strong deepwater formation in the North Pacific, and that two models also showed deepwater formation in the North Atlantic. In the Pacific, there was a northward migration of the subtropical gyre, as evidenced in DeepMIP-Eocene models and the sedimentary record <xref ref-type="bibr" rid="bib1.bibx97" id="paren.37"/>. The lack of direct evidence of sea ice in the Eocene, coupled with the presence of subtropical taxa <xref ref-type="bibr" rid="bib1.bibx89" id="paren.38"><named-content content-type="pre">e.g.</named-content></xref> and extensive temperature forest <xref ref-type="bibr" rid="bib1.bibx86" id="paren.39"><named-content content-type="pre">e.g.</named-content></xref> in the Eocene Arctic, means that model simulations with extensive EECO sea ice are problematic to reconcile with the proxy record. In this context, <xref ref-type="bibr" rid="bib1.bibx63" id="text.40"/> investigated modelled sea ice during the Eocene, finding that the CO<sub>2</sub> threshold for formation of Arctic ice was very model dependent, and that implementation of river run-off and ocean basin connections were important for determining these model differences.</p>
      <p id="d2e1006">Although these studies arising from Phase 1 of DeepMIP-Eocene have considerably advanced our understanding of Eocene climate, there are some aspects of the experimental design which mean that uncertainties remain.  For example, the paleogeography and vegetation boundary conditions which were prescribed in the Phase 1 model simulations have been superseded by more recent reconstructions (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS2"/>), and the standard CO<sub>2</sub> concentration of 840 ppmv is low compared with recent proxy reconstructions (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS1"/>). Also, the recommended initial condition for the ocean temperature had an unrealistic vertical profile, and as a result several models may have been relatively far from full equilibrium by the end of their simulations, which could potentially add additional model-model discrepancies. In addition, models themselves have improved since Phase 1, and computing power has increased, meaning that more advanced models could be used. It is therefore timely to define a new set of recommended boundary conditions to allow a Phase 2 of DeepMIP-Eocene.</p>
      <p id="d2e1022">In this paper we describe boundary conditions and experimental protocols for DeepMIP-Eocene Phase 2 (DeepMIP-Eocene-p2). Section <xref ref-type="sec" rid="Ch1.S2.SS1"/> describes the choice of time period and core simulations, Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/> describes the boundary conditions, Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/> includes suggestions for sensitivity studies, Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/> describes the initialisation and stabilisation protocols, and Sect. <xref ref-type="sec" rid="Ch1.S2.SS5"/> describes the format for model outputs. The paper concludes with a summary (Sect. <xref ref-type="sec" rid="Ch1.S3"/>).</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Experimental design</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Choice of time periods, overview of experimental design, and simulation list</title>
      <p id="d2e1053">In the experimental design for DeepMIP-Eocene Phase 1 <xref ref-type="bibr" rid="bib1.bibx49" id="paren.41"/>, three periods within the Paleocene/Eocene were explicitly identified for study – the Paleocene-Eocene Thermal Maximum (PETM), the latest Paleocene or pre-PETM, and the EECO. These corresponded to the same three periods for which data compilations were presented in <xref ref-type="bibr" rid="bib1.bibx36" id="text.42"/> and <xref ref-type="bibr" rid="bib1.bibx39" id="text.43"/>, which were defined as representing 56, 57–56, and 53.3–49.1 Ma, respectively. However, model simulations for these periods differed solely in their prescribed CO<sub>2</sub> concentration, and the paleogeography used was originally designed to be most appropriate for 55 Ma.  Subsequent analyses of model results, and model-data comparisons, tended to focus on the EECO. In Phase 2 we decide to continue this focus on the EECO, 53.3–49.1 Ma.</p>
      <p id="d2e1074">The paleogeography and vegetation boundary conditions for Phase 2 have been updated from Phase 1, as described in detail in Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS2"/> and <xref ref-type="sec" rid="Ch1.S2.SS2.SSS3"/> respectively, and we provide the appropriate boundary conditions as NetCDF files on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.44"/>.</p>
      <p id="d2e1084">The CO<sub>2</sub> boundary condition is discussed in more detail in Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS1"/>; in summary, we follow Phase 1 in suggesting sensitivity simulations at multiple CO<sub>2</sub> concentrations (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>), but increase the “standard” CO<sub>2</sub> from <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula> preindustrial CO<sub>2</sub> concentration (henceforth 3<inline-formula><mml:math id="M38" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI) to <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula> preindustrial CO<sub>2</sub> concentration (henceforth 5<inline-formula><mml:math id="M41" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI), to be more in line with recent CO<sub>2</sub> proxies.</p>

<table-wrap id="T1" specific-use="star" orientation="landscape"><label>Table 1</label><caption><p id="d2e1185">Summary of simulations associated with DeepMIP-Eocene Phase 2, including two mandatory relevant simulations from CMIP7 (<italic>piControl</italic> and <italic>abrupt-4xCO2</italic>), the mandatory two standard simulations (<italic>deepmip-eocene-p2-5xCO2</italic> and <italic>deepmip-eocene-p2-1xCO2</italic>), and some of the suggested sensitivity studies. Mandatory simulations are in bold.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="4cm"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Simulation Name</oasis:entry>
         <oasis:entry colname="col2" align="left">Simulation description</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M47" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> [ppmv]</oasis:entry>
         <oasis:entry colname="col4">Palaeogeog.</oasis:entry>
         <oasis:entry colname="col5">vegetation</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> [ppmb]</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><bold><italic>piControl</italic></bold></oasis:entry>
         <oasis:entry colname="col2" align="left"><bold>preindustrial control</bold></oasis:entry>
         <oasis:entry colname="col3">280<sup>1</sup></oasis:entry>
         <oasis:entry colname="col4"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col5"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col6"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col7"><bold>800</bold><sup>2</sup></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><bold><italic>abrupt-4xCO2</italic></bold></oasis:entry>
         <oasis:entry colname="col2" align="left"><bold>abrupt increase to 4</bold><inline-formula><mml:math id="M52" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula><bold>PI</bold></oasis:entry>
         <oasis:entry colname="col3"><bold>1120</bold></oasis:entry>
         <oasis:entry colname="col4"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col5"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col6"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col7"><bold>800</bold></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><bold><italic>deepmip-eocene-p2-5xCO2</italic></bold></oasis:entry>
         <oasis:entry colname="col2" align="left"><bold>EECO, at 5</bold><inline-formula><mml:math id="M53" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula><bold>PI</bold></oasis:entry>
         <oasis:entry colname="col3"><bold>1400</bold></oasis:entry>
         <oasis:entry colname="col4"><bold>51 Ma</bold></oasis:entry>
         <oasis:entry colname="col5"><bold>this study</bold></oasis:entry>
         <oasis:entry colname="col6"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col7"><bold>800</bold></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><bold><italic>deepmip-eocene-p2-1xCO2</italic></bold></oasis:entry>
         <oasis:entry colname="col2" align="left"><bold>EECO, at 1</bold><inline-formula><mml:math id="M54" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula><bold>PI</bold></oasis:entry>
         <oasis:entry colname="col3"><bold>280</bold></oasis:entry>
         <oasis:entry colname="col4"><bold>51 Ma</bold></oasis:entry>
         <oasis:entry colname="col5"><bold>this study</bold></oasis:entry>
         <oasis:entry colname="col6"><bold>modern</bold></oasis:entry>
         <oasis:entry colname="col7"><bold>800</bold></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>deepmip-eocene-p2-5xCO2-vegthompson</italic></oasis:entry>
         <oasis:entry colname="col2" align="left">sensitivity study to prescribed vegetation</oasis:entry>
         <oasis:entry colname="col3">1400</oasis:entry>
         <oasis:entry colname="col4">51 Ma</oasis:entry>
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx84" id="text.47"/>
                  </oasis:entry>
         <oasis:entry colname="col6">modern</oasis:entry>
         <oasis:entry colname="col7">800</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>deepmip-eocene-p2-5xCO2-solmeth</italic></oasis:entry>
         <oasis:entry colname="col2" align="left">sensitivity study to solar and methane</oasis:entry>
         <oasis:entry colname="col3">1400</oasis:entry>
         <oasis:entry colname="col4">51 Ma</oasis:entry>
         <oasis:entry colname="col5">this study</oasis:entry>
         <oasis:entry colname="col6">51 Ma</oasis:entry>
         <oasis:entry colname="col7">3000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>deepmip-eocene-p2-5xCO2-geogherold</italic></oasis:entry>
         <oasis:entry colname="col2" align="left">sensitivity study to prescribed paleogeography; <xref ref-type="bibr" rid="bib1.bibx35" id="text.48"/> on Phase 2 reference frame</oasis:entry>
         <oasis:entry colname="col3">1400</oasis:entry>
         <oasis:entry colname="col4">55 Ma</oasis:entry>
         <oasis:entry colname="col5">this study</oasis:entry>
         <oasis:entry colname="col6">modern</oasis:entry>
         <oasis:entry colname="col7">800</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>deepmip-eocene-p2-5xCO2-geog56Ma</italic></oasis:entry>
         <oasis:entry colname="col2" align="left">sensitivity study to prescribed paleogeography; PETM 56 Ma</oasis:entry>
         <oasis:entry colname="col3">1400</oasis:entry>
         <oasis:entry colname="col4">56 Ma</oasis:entry>
         <oasis:entry colname="col5">this study</oasis:entry>
         <oasis:entry colname="col6">modern</oasis:entry>
         <oasis:entry colname="col7">800</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>deepmip-eocene-p2-YxCO2</italic></oasis:entry>
         <oasis:entry colname="col2" align="left">sensitivity study to prescribed CO<sub>2</sub> at 51 Ma.  <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mi>Y</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">6</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Y<inline-formula><mml:math id="M57" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI</oasis:entry>
         <oasis:entry colname="col4">51 Ma</oasis:entry>
         <oasis:entry colname="col5">this study</oasis:entry>
         <oasis:entry colname="col6">modern</oasis:entry>
         <oasis:entry colname="col7">800</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>equilibrium-4xCO2</italic></oasis:entry>
         <oasis:entry colname="col2" align="left">equilibrium at 4<inline-formula><mml:math id="M58" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI</oasis:entry>
         <oasis:entry colname="col3">1120</oasis:entry>
         <oasis:entry colname="col4">modern</oasis:entry>
         <oasis:entry colname="col5">modern</oasis:entry>
         <oasis:entry colname="col6">modern</oasis:entry>
         <oasis:entry colname="col7">800</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d2e1200"><sup>1</sup> If a value different from 280 ppmv is used for <italic>piControl</italic>, then all other <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values in the table should be changed accordingly, as a ratio. Note that <xref ref-type="bibr" rid="bib1.bibx56" id="text.45"/> suggests 284.3 ppmv for CMIP6 <italic>piControl</italic> simulations. <sup>2</sup> If a value different from 800 ppbv is used for <italic>piControl</italic>, then all other <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values in the table should be changed accordingly, as a ratio. Note that <xref ref-type="bibr" rid="bib1.bibx56" id="text.46"/> suggests 808.2 ppbv for CMIP6 <italic>piControl</italic> simulations.</p></table-wrap-foot></table-wrap>

      <p id="d2e1725">The primary EECO boundary conditions described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/> define the standard DeepMIP-Eocene Phase 2 simulation (<italic>deepmip-eocene-p2-5xCO2</italic>, Table <xref ref-type="table" rid="T1"/>). In addition, the analysis of the DeepMIP-Eocene Phase 1 ensemble benefitted greatly from the existence of a preindustrial control (simulation <italic>piControl</italic>, Table <xref ref-type="table" rid="T1"/>) and an Eocene simulation at 1<inline-formula><mml:math id="M59" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI (simulation <italic>deepmip-eocene-p2-1xCO2</italic>, Table <xref ref-type="table" rid="T1"/>), which allowed anomalies relative to preindustrial and the contribution of non-CO<sub>2</sub> forcings to be readily identified. As such, we retain these simulations in Phase 2, and make the 1<inline-formula><mml:math id="M61" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI Eocene simulation mandatory.</p>
      <p id="d2e1769">Assessment of the relevance of the simulations for constraining ECS, for example through emergent constraints, was hampered by the absence of an instantaneous modern 4<inline-formula><mml:math id="M62" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI simulation for many models. As such, we make this simulation mandatory in Phase 2 (<italic>abrupt-4xCO2</italic>, Table <xref ref-type="table" rid="T1"/>), allowing the ECS of every model to be calculated robustly and consistently across the model ensemble.  The standard length of this ECS-determining simulation is relatively short at 150 years, and will likely already exist for some models as it is a core simulation in the “DECK” of CMIP7 <xref ref-type="bibr" rid="bib1.bibx22" id="paren.49"/>, and as such it should not represent a substantial computational burden. Some models may use different internal model parameters in their standard modern and Eocene configurations (e.g. differences in background vertical diffusivity).  In this case, it should be clearly documented which version of the model the <italic>abrupt-4xCO2</italic> simulation, and the associated preindustrial control, are carried out with (or, ideally, both versions should be used).</p>
      <p id="d2e1790">Other aspects to be explored in sensitivity studies, depending on the resources available, include paleogeography, vegetation, and the prescribed solar luminosity and methane (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>).</p>
      <p id="d2e1795">A list of all the mandatory simulations (in bold), and suggested sensitivity studies, is given in Table <xref ref-type="table" rid="T1"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Boundary conditions for Eocene simulation <italic>deepmip-eocene-p2-5xCO2</italic></title>
      <p id="d2e1811">Here we define the boundary conditions for the standard DeepMIP-Eocene Phase 2 simulation (<italic>deepmip-eocene-p2-5xCO2</italic>), including CO<sub>2</sub> (Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS1"/>), paleogeography (Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS2"/>), and vegetation (Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS3"/>). Other boundary conditions, which are unchanged since Phase 1, are described briefly in Sect. <xref ref-type="sec" rid="Ch1.S2.SS2.SSS4"/>, with references given to the more detailed explanations in <xref ref-type="bibr" rid="bib1.bibx49" id="text.50"/>.</p>
<sec id="Ch1.S2.SS2.SSS1">
  <label>2.2.1</label><title>CO<sub>2</sub> boundary condition</title>
      <p id="d2e1855">For atmospheric CO<sub>2</sub>, we make use of the “smoothed” CO<sub>2</sub> of <xref ref-type="bibr" rid="bib1.bibx37" id="text.51"/>, which is a community-endorsed CO<sub>2</sub> record based on multiple proxies. This compilation is considerably updated and expanded from the boron isotope-based record of <xref ref-type="bibr" rid="bib1.bibx4" id="text.52"/> that was available at the time of Phase 1. Averaged over the period of the EECO (53.3–49.1 Ma), the <xref ref-type="bibr" rid="bib1.bibx37" id="text.53"/> record has a value of 1380 ppmv (4.9<inline-formula><mml:math id="M68" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI; dashed horizontal black line, Fig. <xref ref-type="fig" rid="F2"/>).  As such, we define the DeepMIP-Eocene Phase 2 CO<sub>2</sub> as 5<inline-formula><mml:math id="M70" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI, i.e. 1400 ppmv (solid horizontal red line, Fig. <xref ref-type="fig" rid="F2"/>). This is substantially higher than the 3<inline-formula><mml:math id="M71" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI that was the standard in DeepMIP-Eocene Phase 1 (dashed horizontal magenta line, Fig. <xref ref-type="fig" rid="F2"/>).  The value of 5<inline-formula><mml:math id="M72" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI is also supported by the compilation of <xref ref-type="bibr" rid="bib1.bibx69" id="text.54"/>, which is based on boron isotopes, taking account of changes in the boron isotopic concentration of seawater over time, and alkenone carbon isotopes. The loess-smoothed version of <xref ref-type="bibr" rid="bib1.bibx69" id="text.55"/> (their Fig. 6), linearly interpolated to a 0.1 Myr timescale, and then averaged over the EECO (dashed horizontal blue line, Fig. <xref ref-type="fig" rid="F2"/>), is 1462 ppmv for the EECO, which is about 5.2<inline-formula><mml:math id="M73" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI (although we note that there is substantial overlap in the underlying data that informs the <xref ref-type="bibr" rid="bib1.bibx37" id="text.56"/> and <xref ref-type="bibr" rid="bib1.bibx69" id="text.57"/> records over the period of the EECO, so the similarity between them is not unexpected). A value of 5<inline-formula><mml:math id="M74" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI is further supported by the fact that the simulations with the best agreement with temperature proxies (GMST and meridional temperature gradient) in Phase 1 were all in the range 4<inline-formula><mml:math id="M75" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI to 6<inline-formula><mml:math id="M76" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI <xref ref-type="bibr" rid="bib1.bibx50" id="paren.58"/>.</p>

      <fig id="F2" specific-use="star"><label>Figure 2</label><caption><p id="d2e1988">Construction of the standard DeepMIP-Eocene Phase 2 CO<sub>2</sub> concentration. Black solid line shows the <xref ref-type="bibr" rid="bib1.bibx37" id="text.59"/> (H2023) CO<sub>2</sub> record, with grey shading showing the 95 % confidence interval. Blue solid line shows the <xref ref-type="bibr" rid="bib1.bibx69" id="text.60"/> (R2021) CO<sub>2</sub> record.  Black and blue dashed lines shows the respective means of the H2023 and R2021 records over the EECO period, 53.3 to 49.1 Ma. Red solid line shows the DeepMIP-Eocene Phase 2 CO<sub>2</sub> of 1400 ppmv (5<inline-formula><mml:math id="M81" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI). Magenta dashed line shows the standard CO<sub>2</sub> concentration in DeepMIP-Eocene Phase 1 (3<inline-formula><mml:math id="M83" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI).</p></caption>
            <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f02.png"/>

          </fig>

      <p id="d2e2063">We note that CO<sub>2</sub> of 5<inline-formula><mml:math id="M85" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI under Eocene conditions may lead to crashes or “runaway” warming (i.e. an unphysical non-linear increase in global mean temperature) for some models <xref ref-type="bibr" rid="bib1.bibx50 bib1.bibx102" id="paren.61"/>. In this case, we encourage the modelling groups to apply the highest CO<sub>2</sub> their model can use in order to have a stable simulation (typically assessed by the surface and/or deep ocean temperature trends, and top-of-model net radiation; see Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>). In addition, we encourage the modelling groups to report the CO<sub>2</sub> and temperature levels at which the model crashes frequently or “runs away”.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <label>2.2.2</label><title>Paleogeography boundary conditions</title>
      <p id="d2e2114">The paleogeography (including land-sea mask) used in DeepMIP-Eocene Phase 1 was that of <xref ref-type="bibr" rid="bib1.bibx35" id="text.62"/>, shown in Fig. <xref ref-type="fig" rid="F3"/>a. This paleogeographic reconstruction was an update of <xref ref-type="bibr" rid="bib1.bibx51" id="text.63"/>, designed to be appropriate for 55 Ma, and relied on the global plate tectonic model of <xref ref-type="bibr" rid="bib1.bibx60" id="text.64"/> placed in the mantle (specifically, hotspot) frame of <xref ref-type="bibr" rid="bib1.bibx65" id="text.65"/>. Files were also provided for the same paleogeography, but placed in the paleomagnetic reference frame of <xref ref-type="bibr" rid="bib1.bibx85" id="text.66"/>, and an independent second paleogeography was provided by Getech Plc.</p>

      <fig id="F3" specific-use="star"><label>Figure 3</label><caption><p id="d2e2137"><bold>(a)</bold> The 55 Ma <xref ref-type="bibr" rid="bib1.bibx35" id="text.67"/> paleogeography used in DeepMIP-Eocene Phase 1. <bold>(b)</bold> The modern geography from ETOPO5 <xref ref-type="bibr" rid="bib1.bibx62" id="paren.68"/>. <bold>(c)</bold> The 51 Ma DeepMIP-Eocene Phase 2 paleogeography.</p></caption>
            <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f03.png"/>

          </fig>

      <p id="d2e2160">For Phase 2, we provide a fully updated paleogeography that builds on recent advances and updates in paleogeographic reconstruction of the Eocene. Since 2014, several studies published new paleogeographic reconstructions for the early Eocene, including <xref ref-type="bibr" rid="bib1.bibx75" id="text.69"/>, <xref ref-type="bibr" rid="bib1.bibx33" id="text.70"/>, <xref ref-type="bibr" rid="bib1.bibx81" id="text.71"/> with minor updates in <xref ref-type="bibr" rid="bib1.bibx82" id="text.72"/>, and <xref ref-type="bibr" rid="bib1.bibx3" id="text.73"/>. Although these reconstructions are global, the authors often focused on specific regions that were reconstructed in more detail, while other regions were left unchanged from earlier work or simply retained their present-day topography (see Fig. <xref ref-type="fig" rid="FA1"/>). Given the different methods and underlying data used to construct them, it is problematic to assess which reconstruction is “best”. Here, we take a pragmatic approach and integrate the most detailed paleogeographic reconstructions per continent in a new paleogeography for the early Eocene (<inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">51</mml:mn></mml:mrow></mml:math></inline-formula> Ma).</p>
      <p id="d2e2192">As a basis, we use the global plate model of <xref ref-type="bibr" rid="bib1.bibx95" id="text.74"/> placed in a paleomagnetic reference frame (anchored plate ID <inline-formula><mml:math id="M89" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 701701). This plate reconstruction is the current default model in the widely used GPlates software <xref ref-type="bibr" rid="bib1.bibx61" id="paren.75"/> and is the same as that being used in DeepMIP-Miocene Phase 2 <xref ref-type="bibr" rid="bib1.bibx16" id="paren.76"/>. The paleomagnetic reference frame is from <xref ref-type="bibr" rid="bib1.bibx58" id="text.77"/>, based on the approach outlined in <xref ref-type="bibr" rid="bib1.bibx83" id="text.78"/>. We account for differences in the underlying plate tectonic model of each paleogeography reconstruction used here by rotating them, prior to their incorporation, into the <xref ref-type="bibr" rid="bib1.bibx95" id="text.79"/> plate model (and associated reference frame) at 51 Ma, corresponding to the EECO.</p>
      <p id="d2e2221">We have integrated different regional reconstructions as follows. We incorporate global paleobathymetry at 51 Ma using the method described in <xref ref-type="bibr" rid="bib1.bibx94" id="text.80"/> applied to the <xref ref-type="bibr" rid="bib1.bibx95" id="text.81"/> plate model (including paleo-oceanic age grid) to ensure self-consistency. For Antarctica, we adopt the “maximum” topographic reconstruction for 34 Ma (Eocene–Oligocene boundary) from <xref ref-type="bibr" rid="bib1.bibx66" id="text.82"/>, which provides an update of the ANTscape reconstruction for 34 Ma <xref ref-type="bibr" rid="bib1.bibx91" id="paren.83"/> used in <xref ref-type="bibr" rid="bib1.bibx35" id="text.84"/>. We retain the reconstruction of Australia and Zealandia from <xref ref-type="bibr" rid="bib1.bibx35" id="text.85"/> and preserve the reconstruction of the southern hemisphere gateways of Phase 1, as in <xref ref-type="bibr" rid="bib1.bibx35" id="text.86"/>. This means that both the Drake Passage and Tasman Gateways are open but shallow, preventing any deepwater throughflow. For South America and the Caribbean region, we rely on the reconstruction of <xref ref-type="bibr" rid="bib1.bibx3" id="text.87"/> for 50 Ma, except for the Andes, where we use the detailed reconstruction from <xref ref-type="bibr" rid="bib1.bibx9" id="text.88"/>. We include an updated version of the 50 Ma reconstruction of <xref ref-type="bibr" rid="bib1.bibx3" id="text.89"/> for India and eastern Asia, that includes a more realistic position of the Burma terrane and extent of Greater India based on the India-Asia collision scenario of <xref ref-type="bibr" rid="bib1.bibx88" id="text.90"/>. The reconstruction of the Tibetan region, with its three narrow mountain ranges and intermontane valleys, corresponds to the early Eocene paleo-elevation model of <xref ref-type="bibr" rid="bib1.bibx78" id="text.91"/>. For Africa and North America, we integrate the recently published reconstruction of <xref ref-type="bibr" rid="bib1.bibx59" id="text.92"/>, which builds upon the work of <xref ref-type="bibr" rid="bib1.bibx67" id="text.93"/> and <xref ref-type="bibr" rid="bib1.bibx3" id="text.94"/>. The African topography reflects the middle Eocene (48-41 Ma) and is based on the paleo-facies maps of <xref ref-type="bibr" rid="bib1.bibx18" id="text.95"/>. For North America, <xref ref-type="bibr" rid="bib1.bibx59" id="text.96"/> modified the earlier early-middle Eocene reconstructions that included a long, <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> km-high plateau in the North American Cordillera, producing a more realistic topography. Finally, we adopt the reconstruction of <xref ref-type="bibr" rid="bib1.bibx81 bib1.bibx82" id="text.97"/> for the western Tethyan region, western Eurasia and the Arctic (including Greenland). These authors provided a detailed study of the northern hemisphere gateways: in this reconstruction, there is no connection between the Arctic and Pacific Oceans, or between the Arctic and Labrador Sea. The Arctic Ocean is connected to the Neo-Tethys through the West Siberian Seaway <xref ref-type="bibr" rid="bib1.bibx82" id="paren.98"/>. We include a shallow connection between the Arctic and Atlantic Oceans through the Barents Sea, Norwegian Sea, and North Sea. This represents a maximum connectivity scenario for <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula>–48 Ma with water exchange between the northeast Atlantic and Arctic, supported by the widespread occurrence of the Azolla fern in the Arctic and Nordic seas <xref ref-type="bibr" rid="bib1.bibx12" id="paren.99"/>.</p>
      <p id="d2e2307">As in Phase 1, the land-sea mask is defined as the zero contour of the paleogeography. As all the paleogeographic reconstructions used here have modified the paleo-coastlines after sea level corrections, we do not make an additional explicit sea level correction during our merging process. One exception here is for the <xref ref-type="bibr" rid="bib1.bibx66" id="text.100"/> Antarctica paleotopography, which is reconstructed relative to modern-day sea level – here we incorporate a sea level adjustment based on <xref ref-type="bibr" rid="bib1.bibx94" id="text.101"/>. We made minor adjustments to regions where two paleogeographic reconstructions were merged, to avoid artefacts such as sudden jumps in topography or bathymetry. We also smoothed one region of very high isolated topography in the <xref ref-type="bibr" rid="bib1.bibx82" id="text.102"/> reconstruction east of Greenland. In addition, we removed most interior lakes/seas and very small islands to minimize the manual adjustments needed after re-gridding the map to model resolution.</p>
      <p id="d2e2319">The resulting DeepMIP-Eocene Phase 2 paleogeography is shown in Fig. <xref ref-type="fig" rid="F3"/>c, and provided as a NetCDF file on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.103"/>. The map is provided at a relatively high resolution of <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula> (compared to <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula> in Phase 1), to allow high resolution atmosphere-only simulations to be carried out (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS4"/>), and to allow sub-gridscale topography to be calculated (see below).</p>
      <p id="d2e2361">Besides the switch to a paleomagnetic reference frame, the main difference between the Phase 2 paleogeography and that of <xref ref-type="bibr" rid="bib1.bibx35" id="text.104"/> is that the continental interiors are generally lower in the Phase 2 topography. This is because <xref ref-type="bibr" rid="bib1.bibx35" id="text.105"/> built upon the reconstruction of <xref ref-type="bibr" rid="bib1.bibx51" id="text.106"/>, whose reconstruction approach generated some anomalously high plateaus in continental interiors. This becomes evident from the fact that the <xref ref-type="bibr" rid="bib1.bibx35" id="text.107"/> Eocene topography is substantially higher (in places <inline-formula><mml:math id="M94" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1 km) than modern in the Rockies, India, southern Africa, and much of southeast Asia (see Fig. <xref ref-type="fig" rid="FA1"/>). Another important difference is the reduced width of the Neo-Tethys Ocean. This follows from the change of the reconstruction age from 55 to 51 Ma, during which Africa, and particularly India, have moved farther north relative to Eurasia. There are also changes in the extent of shallow seas, with a reduction in northern Afro-Arabia in Phase 2 compared with Phase 1, and an increase north of India. Correct representation of these shelves could be particularly important for models which incorporate biogeochemistry. There is a more detailed representation of small-scale island features, in particular in the Tethys, which could be important for correctly representing flow through gateways in models with high resolution in the ocean.</p>
      <p id="d2e2386">For some lower-resolution models, some ocean gateways may not be fully resolved, resulting in them being closed or shallow when they should be open or deep, or vice-versa. Some groups may need to manually adjust gateways accordingly. In this regard, groups should particularly ensure that the Tasman, Drake, Tethys, and Panama gateways are all open, and that there is a connection between the Atlantic and the Arctic oceans. Note that the Tasman, Drake, and Arctic gateways are all relatively narrow and shallow, but are open in this reconstruction.</p>
      <p id="d2e2390">In addition to the absolute paleogeography, some climate models may require sub-gridscale topography to be prescribed, in particular for gravity-wave drag parameterisations.  If this is the case, then modelling groups should implement subgridscale fields as they see fit. A typical approach previously used in Phase 1 is to correlate subgridscale parameters with absolute heights for the modern (outside of Antarctica), and then apply the resulting functions to the absolute Eocene topography to generate the required Eocene sub-gridscale fields. See Sect. 4.2.1 of <xref ref-type="bibr" rid="bib1.bibx49" id="text.108"/> for more details.  An alternative approach is to calculate subgridscale topographies directly from the Eocene paleogeography, but care must be taken that the resulting Eocene subgridscale topographies are consistent with those of the preindustrial simulation.</p>
      <p id="d2e2396">We leave it to individual groups to decide how best to implement any necessary river-runoff routing field, as the format and requirements for such a field are very model-specific. A typical approach is to derive the routing field from the paleogeographic reconstruction (sometimes after interpolation to the model resolution), for example by following the path of steepest descent from each gridcell, until the coast is reached. Of key importance is that the approach taken, and resulting routing field, is documented by each group. We also note that <xref ref-type="bibr" rid="bib1.bibx35" id="text.109"/> provided an Eocene runoff routing field in their Supplementary Information, which could be adapted to the new paleogeography in Phase 2, although care should be taken doing this given the differences in topography and land-sea mask compared with the Phase 2 paleogeography.</p>
      <p id="d2e2402">Diapycnal mixing in the interior of the ocean is primarily driven by internal tides. The magnitude and distribution of the strength of tidal mixing is related to ocean geometry, and would therefore have been different to modern in the Eocene ocean <xref ref-type="bibr" rid="bib1.bibx29" id="paren.110"/>. Models often use prescribed values for mixing parameters and mixing parameterisations, and <xref ref-type="bibr" rid="bib1.bibx44" id="text.111"/> have shown that using Eocene-specific tidal mixing can influence ocean circulation, and could potentially be important for correctly representing associated biogeochemical processes. Groups wishing to implement Eocene-specific tidal mixing in their simulations can use the energy dissipation field provided in the Supplementary Information of <xref ref-type="bibr" rid="bib1.bibx35" id="text.112"/> (interpolated to the new paleogeography, again taking care given the differences in topography and land-sea mask compared with the Phase 2 paleogeography), which was based on the work of <xref ref-type="bibr" rid="bib1.bibx29" id="text.113"/>.</p>
      <p id="d2e2417">In order to facilitate future model-data comparisons, we provide the paleo locations of the sites in the DeepMIP-Eocene proxy database <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx39" id="paren.114"/> in the new reference frame as an Excel file on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.115"/>. In addition we provide a utility for rotating fields between reference frames (see Code Availability section). The GPlates web service may also be used for retrieving paleo locations consistently with the Phase 2 paleogeography, e.g. to find the paleo location at 51 Ma of a modern site at longitude 32.2° E, 48.9° N, access:  <uri>https://gws.gplates.org/reconstruct/reconstruct_points/?lons=32.2&amp;lats=48.9&amp;time=51&amp;model=ZAHIROVIC2022&amp;anchor_plate_id=701701</uri> (last access: 3 July 2026).</p>
</sec>
<sec id="Ch1.S2.SS2.SSS3">
  <label>2.2.3</label><title>Vegetation boundary conditions</title>
      <p id="d2e2438">The vegetation in DeepMIP-Eocene Phase 1 was that of <xref ref-type="bibr" rid="bib1.bibx35" id="text.116"/>.  This was produced by running the BIOME4 vegetation model <xref ref-type="bibr" rid="bib1.bibx41" id="paren.117"/> forced by a pre-DeepMIP Eocene CESM simulation, with the results expressed using the megabiome classification of <xref ref-type="bibr" rid="bib1.bibx31" id="text.118"/> (Fig. <xref ref-type="fig" rid="F4"/>a).</p>

      <fig id="F4" specific-use="star"><label>Figure 4</label><caption><p id="d2e2454"><bold>(a)</bold> The <xref ref-type="bibr" rid="bib1.bibx35" id="text.119"/> vegetation used in DeepMIP-Eocene Phase 1. <bold>(b)</bold> The modern vegetation of <xref ref-type="bibr" rid="bib1.bibx77" id="text.120"/>, using LPJ-GUESS biomes which have had minor classification adjustments compared to <xref ref-type="bibr" rid="bib1.bibx77" id="text.121"/> in order to increase consistency with the Eocene biomes. <bold>(c)</bold> DeepMIP-Eocene Phase 2 vegetation, which is derived from the LPJ-GUESS model when forced by the CESM1.2 and GFDL 6<inline-formula><mml:math id="M95" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI simulations from Phase 1 of DeepMIP-Eocene, and nudged towards the vegetation proxy data of <xref ref-type="bibr" rid="bib1.bibx84" id="text.122"/>. Note that boreal forests, savannah, grasslands, and tundra vegetation types are not present in the Eocene LPJ-GUESS-based reconstruction in <bold>(c)</bold>, but are included in the legend for comparison with the modern vegetation reconstruction in <bold>(b)</bold>. Figure <xref ref-type="fig" rid="FA2"/>c shows the nudged vegetation in <bold>(c)</bold> prior to being regridded to the DeepMIP-Eocene Phase 2 reference frame and land-sea mask.</p></caption>
            <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f04.png"/>

          </fig>

      <p id="d2e2502">For Phase 2, we make use of work of <xref ref-type="bibr" rid="bib1.bibx13" id="text.123"/>, who ran the LPJ-GUESS vegetation model <xref ref-type="bibr" rid="bib1.bibx77" id="paren.124"/> forced by all of the DeepMIP-Eocene Phase 1 climate model simulations. To better represent Eocene vegetation, plant functional types were adjusted in these simulations by adding shrub plant functional types based on <xref ref-type="bibr" rid="bib1.bibx2" id="text.125"/> and deactivating grass plant functional types. Qualitative comparison <xref ref-type="bibr" rid="bib1.bibx13" id="paren.126"/> of these results with a proxy paleoflora dataset of the Eocene <xref ref-type="bibr" rid="bib1.bibx84" id="paren.127"/> indicates best agreement between the model simulations and data for vegetation associated with the CESM1.2 simulation at 6<inline-formula><mml:math id="M96" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI over most of the globe (see Fig. <xref ref-type="fig" rid="FA2"/>a), but a best fit with vegetation associated with the GFDL simulation at 6<inline-formula><mml:math id="M97" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI over Antarctica (see Fig. <xref ref-type="fig" rid="FA2"/>b). Therefore, we choose this hybrid CESM1.2/GFDL-forced LPJ-GUESS vegetation distribution as the starting point for the boundary condition for DeepMIP-Eocene Phase 2.</p>
      <p id="d2e2540">To produce the final data-model hybrid vegetation boundary condition, we integrated the palaeobotanical data-based reconstruction published in <xref ref-type="bibr" rid="bib1.bibx84" id="text.128"/> with the CESM1.2/GFDL-forced LPJ-GUESS model-based vegetation simulation <xref ref-type="bibr" rid="bib1.bibx13" id="paren.129"/>. Following the qualitative approach established within the PlioMIP framework <xref ref-type="bibr" rid="bib1.bibx74" id="paren.130"/>, manual adjustments were made for regions where palaeobotanical data showed substantial discrepancies with the model simulations. These adjustments include extending warm-temperate forest cover in East Asia, replacing boreal forest with temperate forests in West Siberia, and increasing the extent of dry woodlands in northern hemisphere subtropical regions (see Fig. <xref ref-type="fig" rid="FA2"/>c). However, we note that there is geographical bias in the quantity of paleobotanical data, with for example relatively dense coverage in western North America and southeast Asia, but no coverage in the region of the modern Amazon (Fig. <xref ref-type="fig" rid="FA2"/>). The hybrid vegetation was then regridded to the new Phase 2 land-sea mask – the final result of this process is shown in Fig. <xref ref-type="fig" rid="F4"/>c.</p>
      <p id="d2e2559">We note that the CO<sub>2</sub> of 6<inline-formula><mml:math id="M99" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI in the underlying LPJ-GUESS vegetation model simulations is inconsistent with the 5<inline-formula><mml:math id="M100" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI recommended in the DeepMIP-Eocene Phase 2 climate model simulations and based on CO<sub>2</sub> proxies. However, 5<inline-formula><mml:math id="M102" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI simulations are not available from the last phase of DeepMIP-Eocene, and in any case, biases in the climate sensitivity of the climate models could result in an inconsistency between actual Eocene CO<sub>2</sub> and the CO<sub>2</sub> that results in the best modelled fit to the vegetation data.</p>
      <p id="d2e2620">Similarly as for Phase 1, it is important that groups take care to implement this vegetation in a  manner as consistent as possible with their preindustrial control simulation. This may mean converting the LPJ-GUESS vegetation types into the model's intrinsic vegetation types, or converting the LPJ-GUESS vegetation types into land surface parameters such as albedo, roughness length etc. In either case, a modern map of vegetation, using the LPJ-GUESS vegetation types, is provided as a NetCDF file on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.131"/> to aid this process, and shown in Fig. <xref ref-type="fig" rid="F4"/>b.  Values of several land-surface parameters for typical vegetation types are available on the PRISM webpages:  <uri>https://geology.er.usgs.gov/egpsc/prism/prism_1_23/ancillary/Biome_Megabiome_Lookup.html</uri> (last access: 3 July 2026).</p>
</sec>
<sec id="Ch1.S2.SS2.SSS4">
  <label>2.2.4</label><title>Other boundary conditions</title>
      <p id="d2e2639">The recommendation for all other boundary conditions remains unchanged from Phase 1 <xref ref-type="bibr" rid="bib1.bibx49" id="paren.132"><named-content content-type="pre">refer to</named-content></xref>. Using the section numbering from <xref ref-type="bibr" rid="bib1.bibx49" id="text.133"/>, detailed recommendations are given therein for soils and lakes (Sect. 4.2.2), non-CO<sub>2</sub> greenhouse gases (Sect. 4.2.3), aerosols (Sect. 4.2.4), and solar luminosity and astronomical (orbital) parameters (Sect. 4.2.5). In brief, soil parameters are globally homogeneous typical modern values, there are no lakes or ice sheets, non-CO<sub>2</sub> greenhouse gas concentrations are kept as preindustrial, several options are provided for aerosols, and solar luminosity and astronomical configurations are kept as modern. Due to the uncertainties in many of these aspects, suggested sensitivity studies are highlighted below.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Suggested sensitivity studies</title>
      <p id="d2e2677">Groups are encouraged to carry out any sensitivity studies in which they are interested, and that best advance their scientific understanding. Sometimes, it can be useful to have more than one group carry out a particular sensitivity study, to test model dependence. We therefore suggest some sensitivity studies that may be of particular interest, and provide NetCDF files on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.134"/> as appropriate. The names of the sensitivity simulations are summarised in Table <xref ref-type="table" rid="T1"/>.</p>
<sec id="Ch1.S2.SS3.SSS1">
  <label>2.3.1</label><title>Sensitivity studies to greenhouse gases and solar luminosity; simulations <italic>deepmip-eocene-p2-YxCO2</italic>, <italic>deepmip-eocene-p2-5xCO2-solmeth</italic>, <italic>equilibrium-4xCO2</italic></title>
      <p id="d2e2701">As described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS1"/>, one of the mandatory experiments in DeepMP Phase 2 is a sensitivity study with 1<inline-formula><mml:math id="M107" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI, to identify the impact of CO<sub>2</sub> versus non-CO<sub>2</sub> forcings on Eocene climate (simulation <italic>deepmip-eocene-p2-1xCO2</italic>, see Table <xref ref-type="table" rid="T1"/>). In addition, we encourage EECO sensitivity studies at other CO<sub>2</sub> concentrations (simulations <italic>deepmip-eocene-p2-YxCO2</italic>, see Table <xref ref-type="table" rid="T1"/>), including 4<inline-formula><mml:math id="M111" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI (also allowing comparison with an extended/equilibrated version of the CMIP <italic>abrupt-4xCO2</italic> experiment; <italic>equilibrium-4xCO2</italic>, see Table <xref ref-type="table" rid="T1"/>), 3<inline-formula><mml:math id="M112" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI (also allowing comparison with the most common Eocene simulation from Phase 1), and 6<inline-formula><mml:math id="M113" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI (close to the top-end estimate of EECO CO<sub>2</sub> from <xref ref-type="bibr" rid="bib1.bibx37" id="altparen.135"/> and <xref ref-type="bibr" rid="bib1.bibx69" id="altparen.136"/>). These sensitivity simulations with various CO<sub>2</sub> levels could also be used to examine the potential nonlinearity in the sensitivity of Eocene temperatures to CO<sub>2</sub> <xref ref-type="bibr" rid="bib1.bibx100 bib1.bibx17" id="paren.137"/>. We also encourage abrupt CO<sub>2</sub> changes to estimate the ECS of the Eocene configuration (in particular an abrupt quadrupling from 1<inline-formula><mml:math id="M118" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI to 4<inline-formula><mml:math id="M119" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI for comparison with the modern <italic>abrupt-4xCO2</italic> experiment).</p>
      <p id="d2e2845">Given that there is evidence that there were more wetlands in the Eocene compared with modern <xref ref-type="bibr" rid="bib1.bibx92" id="paren.138"/>, and that there were perturbations to the CH<sub>4</sub> cycle during the PETM <xref ref-type="bibr" rid="bib1.bibx40" id="paren.139"/>, it is probable that CH<sub>4</sub> concentrations during the EECO were higher than modern.  For DeepMIP-Eocene Phase 1, <xref ref-type="bibr" rid="bib1.bibx49" id="text.140"/> justified keeping non-CO<sub>2</sub> greenhouse gases as preindustrial and solar luminosity as modern, by arguing that their respective forcings broadly cancelled out. However, this neglects the substantial uncertainty in Eocene CH<sub>4</sub> (and other non-CO<sub>2</sub> greenhouse gas) forcing, and neglects that even if these two forcings balance in the global annual mean, seasonal and spatial residuals in the climate response will still remain <xref ref-type="bibr" rid="bib1.bibx48" id="paren.141"/>. We therefore encourage sensitivity studies in which changes in solar luminosity and CH<sub>4</sub> are separately represented (simulation <italic>deepmip-eocene-p2-5xCO2-solmeth</italic>, see Table <xref ref-type="table" rid="T1"/>). For solar luminosity we recommend the value of 1355 W m<sup>−2</sup> for 51 Ma <xref ref-type="bibr" rid="bib1.bibx28" id="paren.142"/>. For CH<sub>4</sub>, a value of 3000 ppb for the early Eocene is consistent with the modelling work of <xref ref-type="bibr" rid="bib1.bibx8" id="text.143"/>. This was the value calculated in <xref ref-type="bibr" rid="bib1.bibx49" id="text.144"/> to roughly cancel the solar luminosity change, see their Sect. 4.2.3. However,  <xref ref-type="bibr" rid="bib1.bibx8" id="text.145"/> also quotes a range between 2580–3614 ppb, so other values may be preferred.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <label>2.3.2</label><title>Sensitivity studies to paleogeography; simulations <italic>deepmip-eocene-p2-5xCO2-geogherold</italic> and <italic>deepmip-eocene-p2-5xCO2-geog56Ma</italic></title>
      <p id="d2e2969">Some groups may wish to explore the difference between the Phase 1 paleogeography of <xref ref-type="bibr" rid="bib1.bibx35" id="text.146"/> and the new Phase 2 paleogeography (simulation <italic>deepmip-eocene-p2-5xCO2-geogherold</italic>; Table <xref ref-type="table" rid="T1"/>). We therefore provide the <xref ref-type="bibr" rid="bib1.bibx35" id="text.147"/> paleogeography on the new Phase 2 reference frame (at 55 Ma for consistency with the original <xref ref-type="bibr" rid="bib1.bibx35" id="text.148"/> reconstruction) as a NetCDF file on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.149"/> (Fig. <xref ref-type="fig" rid="F5"/>a), because the reference frame has been shown to influence atmospheric and ocean circulation <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx99" id="paren.150"/>.</p>
      <p id="d2e2995">Some groups may wish to simulate the PETM (56 Ma) as opposed to the EECO (51 Ma) (simulation <italic>deepmip-eocene-p2-5xCO2-geog56Ma</italic>; Table <xref ref-type="table" rid="T1"/>). As such, we provide a version of the Phase 2 paleogeography that has been rotated back to 56 Ma, consistently with the Phase 2 plate model and reference frame, and including topography specific to 56 Ma in South America <xref ref-type="bibr" rid="bib1.bibx9" id="paren.151"/> and the North Atlantic region <xref ref-type="bibr" rid="bib1.bibx82" id="paren.152"/>, as a NetCDF file on Zenodo <xref ref-type="bibr" rid="bib1.bibx47" id="paren.153"/> (Fig. <xref ref-type="fig" rid="F5"/>b).</p>

      <fig id="F5" specific-use="star"><label>Figure 5</label><caption><p id="d2e3017"><bold>(a)</bold> The <xref ref-type="bibr" rid="bib1.bibx35" id="text.154"/> paleogeography, at 55 Ma on the Phase 2 plate model and reference frame, suggested as a sensitivity study in DeepMIP-Eocene Phase 2 (simulation <italic>deepmip-eocene-p2-5xCO2-geogherold</italic>; Table <xref ref-type="table" rid="T1"/>). For comparison with the standard DeepMIP-Eocene Phase 2 paleogeography in Fig. <xref ref-type="fig" rid="F3"/>c and the original <xref ref-type="bibr" rid="bib1.bibx35" id="text.155"/> paleogeography in Fig. <xref ref-type="fig" rid="F3"/>a. <bold>(b)</bold> 56 Ma paleogeography suggested as a sensitivity study in DeepMIP-Eocene Phase 2 (simulation <italic>deepmip-eocene-p2-5xCO2-geog56Ma</italic>; Table <xref ref-type="table" rid="T1"/>). For comparison with the standard DeepMIP-Eocene Phase 2 paleogeography in Figu. <xref ref-type="fig" rid="F3"/>c.</p></caption>
            <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f05.png"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS3.SSS3">
  <label>2.3.3</label><title>Sensitivity studies to vegetation and land surface parameters; simulation <italic>deepmip-eocene-p2-5xCO2-vegthompson</italic></title>
      <p id="d2e3065">An alternative Phase 2 vegetation dataset is provided by <xref ref-type="bibr" rid="bib1.bibx84" id="text.156"/>. In this case, a similar approach is taken as in <xref ref-type="bibr" rid="bib1.bibx13" id="text.157"/>, but the BIOME4 vegetation model <xref ref-type="bibr" rid="bib1.bibx41" id="paren.158"/> is used in place of the LPJ-GUESS model. <xref ref-type="bibr" rid="bib1.bibx84" id="text.159"/> find that the vegetation associated with the CESM1.2 and GFDL_CM2.1 models at 6<inline-formula><mml:math id="M128" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI best fit the vegetation proxy data, which is consistent with the findings of <xref ref-type="bibr" rid="bib1.bibx13" id="text.160"/> using LPJ-GUESS. Given that the CESM1.2 model <xref ref-type="bibr" rid="bib1.bibx38" id="paren.161"/> runs at a higher horizontal and vertical resolution than the GFDL_CM2.1 model <xref ref-type="bibr" rid="bib1.bibx21" id="paren.162"/> and was developed more recently, and is therefore likely to overall have a more accurate representation of physical processes, we use the CESM1.2-based vegetation as the main sensitivity study in DeepMIP-Eocene Phase 2. Again, we note that this CO<sub>2</sub> concentration is inconsistent with the 5<inline-formula><mml:math id="M130" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI recommended in the DeepMIP-Eocene Phase 2 climate model simulations. We encourage groups to carry out sensitivity studies using this <xref ref-type="bibr" rid="bib1.bibx84" id="text.163"/> vegetation, which is shown in Fig. <xref ref-type="fig" rid="F6"/>a. However, in contrast to our LPJ-GUESS model/proxy hybrid reconstruction (and the underlying LPJ-GUESS vegetation), this BIOME4 vegetation shows widespread discrepancies in the subtropics and mid-latitudes between proxy-reconstructed forests and woodlands and modelled dry shrublands and deserts <xref ref-type="bibr" rid="bib1.bibx84" id="paren.164"/>. Similarly as for the LPJ-GUESS vegetation, a modern vegetation map using the BIOME4 vegetation types is provided (Fig. <xref ref-type="fig" rid="F6"/>b, see Sect. 4.2.2 of <xref ref-type="bibr" rid="bib1.bibx49" id="altparen.165"/> for more details).</p>

      <fig id="F6" specific-use="star"><label>Figure 6</label><caption><p id="d2e3129"><bold>(a)</bold> The <xref ref-type="bibr" rid="bib1.bibx84" id="text.166"/> vegetation, suggested as a sensitivity study in DeepMIP-Eocene Phase 2 (simulation <italic>deepmip-eocene-p2-5xCO2-vegthompson</italic>; Table <xref ref-type="table" rid="T1"/>), which is the output of the BIOME4 model when forced by the CESM1.2 6<inline-formula><mml:math id="M131" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI simulations from Phase 1 of DeepMIP. For comparison with the standard DeepMIP-Eocene Phase 2 vegetation in Fig. <xref ref-type="fig" rid="F4"/>c. <bold>(b)</bold> Modern vegetation using the same biome classification as BIOME4 <xref ref-type="bibr" rid="bib1.bibx35" id="paren.167"/>.</p></caption>
            <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f06.png"/>

          </fig>

      <p id="d2e3164">Furthermore, we encourage sensitivity studies to lake distributions, as these have been shown to be potentially important for determining Eocene hydrology and climate, through changes in surface heat capacity and formation of low clouds <xref ref-type="bibr" rid="bib1.bibx34" id="paren.168"/>. Similarly, modified Eocene soil characteristics are likely to play a role, given their impact on warm climate simulations of the Pliocene <xref ref-type="bibr" rid="bib1.bibx68" id="paren.169"/>. Although there are global maps of soils and lakes for the Pliocene based on proxy data <xref ref-type="bibr" rid="bib1.bibx68" id="paren.170"/>, no such global datasets exist for the early Eocene as far as we are aware. As such, Eocene sensitivity studies are likely to be somewhat idealised, but could be modified in association with the vegetation types, as is defined for DeepMIP-Miocene <xref ref-type="bibr" rid="bib1.bibx11" id="paren.171"/>.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS4">
  <label>2.3.4</label><title>Other sensitivity studies</title>
      <p id="d2e3188">Groups are of course welcome to carry out sensitivity studies in addition to those in Table <xref ref-type="table" rid="T1"/>. As in Phase 1, we encourage sensitivity studies to astronomical (orbital) parameters (see <xref ref-type="bibr" rid="bib1.bibx72" id="altparen.172"/> and Sect. 4.3.3 in <xref ref-type="bibr" rid="bib1.bibx49" id="altparen.173"/>), and to initialisation <xref ref-type="bibr" rid="bib1.bibx49" id="paren.174"><named-content content-type="pre">Sect. 4.3.7 in </named-content></xref>. Other aspects that groups may wish to explore include: aerosols <xref ref-type="bibr" rid="bib1.bibx43" id="paren.175"/>, atmospheric chemistry, including for example methane–ozone–hydroxyl interactions <xref ref-type="bibr" rid="bib1.bibx8" id="paren.176"/>, model resolution <xref ref-type="bibr" rid="bib1.bibx64" id="paren.177"/>, dynamic vegetation <xref ref-type="bibr" rid="bib1.bibx45" id="paren.178"/>, tidal mixing <xref ref-type="bibr" rid="bib1.bibx44" id="paren.179"/>, stable water isotopes <xref ref-type="bibr" rid="bib1.bibx101" id="paren.180"/>, and internal model parameters <xref ref-type="bibr" rid="bib1.bibx73" id="paren.181"/>. Groups may also wish to carry out high-resolution atmosphere-only simulations to explore processes/features such as atmospheric rivers <xref ref-type="bibr" rid="bib1.bibx76" id="paren.182"/>.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Initial conditions, integration length, and assessment of equilibrium</title>
      <p id="d2e3240">In Phase 1, a recommendation was given for oceanic temperature and salinity initial conditions. This was a linear decrease of temperature with depth, as a function of latitude, and a globally constant salinity of 34.7 psu <xref ref-type="bibr" rid="bib1.bibx49" id="paren.183"><named-content content-type="pre">see Eq. 1 in</named-content></xref>. However, several groups found that the model became unstable with this initial condition, and other groups found that it resulted in very long spinup times, as the linear decrease with depth resulted in an excess of energy at intermediate depths which took a long time to dissipate.  As such, in Phase 2 we are less prescriptive, and encourage groups to use their preferred method for initialisation. The key requirement is that groups clearly document their method in their respective publications.</p>
      <p id="d2e3248">As an example, groups may choose to initialise from spun-up oceanic states from previous Phase 1 simulations, carried out with their own or other models, and available in the DeepMIP-Eocene Phase 1 model database <xref ref-type="bibr" rid="bib1.bibx79" id="paren.184"/>. In this case, we encourage groups to use appropriate initial conditions according to the CO<sub>2</sub> concentration at which they are running <xref ref-type="bibr" rid="bib1.bibx80" id="paren.185"><named-content content-type="pre">see discussion in</named-content></xref>, and accounting for the climate sensitivity of their model compared with the climate sensitivity of the initialising model. Also in this case we recommend that groups take account of any residual TOA imbalance in the previous simulations as a broad indicator of their degree of equilibration <xref ref-type="bibr" rid="bib1.bibx50" id="paren.186"><named-content content-type="pre">see Table S1 in the Supplement of</named-content></xref>.</p>
      <p id="d2e3273">Alternatively, groups may wish to use ocean proxy data to inform the initialisation of the temperature and salinity fields.  In particular, deep ocean clumped isotope data <xref ref-type="bibr" rid="bib1.bibx52" id="paren.187"/> using the calibration of <xref ref-type="bibr" rid="bib1.bibx54" id="text.188"/>, and a pH-adjusted transformation to temperature of the benthic oxygen isotope record <xref ref-type="bibr" rid="bib1.bibx87 bib1.bibx24" id="paren.189"/>, constrain EECO deep ocean temperature to <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mn mathvariant="normal">16.2</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">4.4</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mn mathvariant="normal">18.4</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.6</mml:mn></mml:mrow></mml:math></inline-formula> °C (1 SD), respectively (Fig. <xref ref-type="fig" rid="F1"/>). We therefore suggest that simulations could be initialised with a deep ocean temperature of around 17 °C, intermediate between these two approaches (although we note that there are uncertainties in this value associated with uncertainties in the calibrations). Analysis of the phase one DeepMIP model output <xref ref-type="bibr" rid="bib1.bibx27" id="paren.190"/> demonstrated that the inter-basin deep ocean temperature offset is less than 0.5 °C, and that the temperature gradient in the deep ocean is less than 0.5 °C km<sup>−1</sup> in the majority of the simulations included in that analysis, as is also the case for the modern ocean. However, although at present there is no evidence for strong inter-basin heterogeneity in deep ocean temperature in the EECO, we note evidence for stronger (<inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> °C) deep ocean heterogeneity in past warm periods such as the mid-Pliocene <xref ref-type="bibr" rid="bib1.bibx10" id="paren.191"/>. Overall, despite these uncertainties, we suggest that the above initialisation temperature be applied to all basins and depths below 3 km.</p>
      <p id="d2e3341">In any case, we strongly recommend that groups initialise temperature and salinity in a mutually consistent fashion, to avoid spurious density contrasts early in the simulation, and that groups initialise with relatively warm temperatures in the deep ocean, because doing so may potentially accelerate spin-up by enabling the activation of a meridional overturning circulation more quickly, as opposed to remaining stratified for a relatively long time due to a “cold-start”.</p>
      <p id="d2e3345">As in Phase 1, simulations should be carried out for as long as possible, in order to reach as close to equilibrium as possible. In Phase 1, a mean absolute TOA imbalance of less than 0.3 W m<sup>−2</sup> was required. Since then, <xref ref-type="bibr" rid="bib1.bibx20" id="text.192"/> have shown that substantial climatological and ocean circulation changes can take place following additional spinup after a threshold of 0.3 W m<sup>−2</sup> has been reached. Therefore, in Phase 2 we strongly encourage groups to aim for a mean absolute TOA imbalance over the final 100 years of the simulations (i.e. the period uploaded to the DeepMIP database) of less than 0.1 W m<sup>−2</sup> and deep ocean temperature (at <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3500</mml:mn></mml:mrow></mml:math></inline-formula> m) trends of less than 0.1°/century. For those models for which the TOA energy budget is not closed, the TOA imbalance should be similar to that of an equilibrated preindustrial control simulation.  These reduced thresholds particularly apply to the “standard” simulations (<italic>deepmip-eocene-p2-5xCO2</italic> and <italic>deepmip-eocene-p2-1xCO2</italic>; see Table <xref ref-type="table" rid="T1"/>). We encourage groups to report their extrapolated full-equilibrium temperature as derived from a “Gregory plot” <xref ref-type="bibr" rid="bib1.bibx30" id="paren.193"/>. Given that these thresholds are not necessarily sufficient to indicate an ocean circulation in quasi-equilibrium, modelling groups are encouraged to report time series of key ocean variables to enable diagnoses of ocean equilibrium <xref ref-type="bibr" rid="bib1.bibx20" id="paren.194"/> (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS5"/>). Groups may also choose to carry out “ocean surgery” during a simulation <xref ref-type="bibr" rid="bib1.bibx80" id="paren.195"/>, in which instantaneous perturbations are applied to the ocean temperature field in an attempt to accelerate the progression towards full equilibrium.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Model outputs</title>
      <p id="d2e3427">We strongly encourage groups to upload their simulation boundary conditions and outputs to the DeepMIP database <xref ref-type="bibr" rid="bib1.bibx79" id="paren.196"/>. Instructions for uploading data are given here: <uri>https://www.deepmip.org/data</uri> (last access: 3 July 2026). We encourage groups to provide means and standard deviations of the last 100 years of their simulations for multiple variables, and timeseries of the last 100 years of their simulations for selected variables. Each output variable is stored in a separate file according to the following structure:

                <disp-formula specific-use="align"><mml:math id="M141" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">directory</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="monospace">deepmip</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="monospace">eocene</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="monospace">p</mml:mi><mml:mn mathvariant="monospace">2</mml:mn><mml:mo>/</mml:mo><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Family</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>/</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Model</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>/</mml:mo><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Experiment</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>/</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Version</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>/</mml:mo><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Averaging</mml:mi><mml:mo>&gt;</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">filename</mml:mi><mml:mo>=</mml:mo><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Variable</mml:mi><mml:mo>&gt;</mml:mo><mml:mi mathvariant="monospace">_</mml:mi><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Model</mml:mi><mml:mo>&gt;</mml:mo><mml:mi mathvariant="monospace">_</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Experiment</mml:mi><mml:mo>&gt;</mml:mo><mml:mi mathvariant="monospace">_</mml:mi><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Version</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>&lt;</mml:mo><mml:mi mathvariant="monospace">Statistic</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>.</mml:mo><mml:mi mathvariant="monospace">nc</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

          where: <list list-type="bullet"><list-item>
      <p id="d2e3587"><preformat preformat-type="code"><![CDATA[<Family>]]></preformat> and <preformat preformat-type="code"><![CDATA[<Model>]]></preformat> describe the model used to carry out the simulations <xref ref-type="bibr" rid="bib1.bibx79" id="paren.197"><named-content content-type="pre">see Table 1 in</named-content><named-content content-type="post">for examples from Phase 1</named-content></xref>.</p></list-item><list-item>
      <p id="d2e3603"><preformat preformat-type="code"><![CDATA[<Experiment>]]></preformat> is listed Table <xref ref-type="table" rid="T1"/> of this paper <xref ref-type="bibr" rid="bib1.bibx79" id="paren.198"><named-content content-type="pre">also see Table 2 in</named-content><named-content content-type="post">for examples from Phase 1</named-content></xref>.</p></list-item><list-item>
      <p id="d2e3618"><preformat preformat-type="code"><![CDATA[<Variable>]]></preformat> represents the variable name; we encourage all groups to use CF-compliant <xref ref-type="bibr" rid="bib1.bibx23" id="paren.199"/> variable names. A list of commonly-used variables from Phase 1 is given in Tables 4 (atmosphere) and 5 (ocean) of <xref ref-type="bibr" rid="bib1.bibx79" id="text.200"/>. In addition, studies of ocean mixing would benefit from the total vertical diffusivity coefficient (and its contributions, if relevant), the Brunt–Väisälä frequency, and the power consumed by mixing processes.  Also, studies exploring the role of isopycnal mixing would benefit from outputs related to ocean eddy parameterisation, for example from the <xref ref-type="bibr" rid="bib1.bibx26" id="text.201"/> scheme, if used.</p></list-item><list-item>
      <p id="d2e3633"><preformat preformat-type="code"><![CDATA[<Statistic>]]></preformat> is either “mean” (1 or 12 timesteps for annual or monthly means), “std” (1 or 12 timesteps for annual or monthly temporal standard deviations across the meaning period), “time_series” (1200 timesteps) or omitted for the time-independent boundary conditions. </p></list-item><list-item>
      <p id="d2e3640"><preformat preformat-type="code"><![CDATA[<Averaging>]]></preformat> can either be “climatology” or “time_series]]. “Climatology” denotes the directory for storing the (smaller) climatological mean and standard deviation (“mean” and “std” files). “time_series” denotes the directory for storing the (larger) “time_series” files to enable more granular download options.</p></list-item></list></p>
      <p id="d2e3645">We further strongly encourage modelling groups to upload full simulation-length time series of key oceanic variables to diagnose the equilibrium state of the ocean. These are the mean temperature in the model level that includes a depth of 3500 m, and where available also the mean ocean ideal age tracer at this level. We further encourage the reporting of key meridional overturning circulation (MOC) streamfunction maxima and minima, and suggest specifically the outputs: Atlantic MOC (AMOC): maximum between 45–68° N; Pacific MOC (PMOC): maximum between 25–58° N; Global MOC (GMOC): maximum global MOC north of 40° S; Southern Ocean MOC: absolute of  minimum of the GMOC south of 60° S. All metrics should be calculated below 500 m depth to exclude the wind-driven gyres <xref ref-type="bibr" rid="bib1.bibx20" id="paren.202"/>. When calculating the overturning streamfunction in specific basins, care should be taken to correctly account for any open lateral boundaries.</p>
      <p id="d2e3651">For those models with an irregular ocean (and/or atmospheric) grid, in addition to the native grid, the results should also be interpolated to a regular lat–lon grid prior to uploading to the database. In this case, care should be taken that the global mean of relevant variables is conserved.</p>
      <p id="d2e3654">If the <italic>deepmip-eocene-p2-5xCO2</italic> simulation becomes an official CMIP7 simulation (likely named <italic>eocene-5x</italic>), then we also encourage groups to submit this simulation the Earth System Grid Federation (ESGF).</p>
</sec>
</sec>
<sec id="Ch1.S3" sec-type="conclusions">
  <label>3</label><title>Summary</title>
      <p id="d2e3672">We have provided a framework for groups to carry out consistent sets of climate model simulations of the early Eocene, facilitating model-data comparisons and exploration of sensitivities. We hope that modelling groups will soon begin to start simulations within this new framework, and have a “stretch goal” to have some simulations available in time for inclusion in IPCC AR7. In any case, we anticipate, as was the case for Phase 1, that this framework will lead on to multiple studies exploring multiple aspects of the Earth system under a high-CO<sub>2</sub> warm climate. Again, as in Phase 1, we anticipate that those scientists who carry out the model simulations will be able to actively contribute to many of these papers, bringing their own expertise about their  models to the analysis, and recognising their hard work in configuring and carrying out their simulations. We also anticipate that the DeepMIP proxy database will be expanded and developed over this period, leading to new insights and more robust model-data comparisons.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <label>Appendix A</label><title/>

      <fig id="FA1"><label>Figure A1</label><caption><p id="d2e3697">Difference in height between the four Eocene paleogeographies considered in this paper and the modern ETOPO5 geography <xref ref-type="bibr" rid="bib1.bibx62" id="paren.203"/>, ETOPO5 minus Eocene, with the modern geography rotated to the appropriate Eocene time period for each paleogeography.</p></caption>
        
        <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f07.png"/>

      </fig>

<fig id="FA2"><label>Figure A2</label><caption><p id="d2e3714"><bold>(a)</bold> The original vegetation from <xref ref-type="bibr" rid="bib1.bibx13" id="text.204"/>, with LPJ-GUESS forced by the DeepMIP Phase 1 simulations from <bold>(a)</bold> CESM1.2 at 6<inline-formula><mml:math id="M143" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI and <bold>(b)</bold> GFDL at 6<inline-formula><mml:math id="M144" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>PI. <bold>(c)</bold> The hybrid proxy-model reconstruction, which is then regridded to the DeepMIP Phase 2 reference frame, as shown in the main paper in Fig. <xref ref-type="fig" rid="F4"/>c. Superimposed on all plots is the vegetation proxy data of <xref ref-type="bibr" rid="bib1.bibx84" id="text.205"/>.</p></caption>
        
        <graphic xlink:href="https://gmd.copernicus.org/articles/19/6143/2026/gmd-19-6143-2026-f08.png"/>

      </fig>


</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d2e3766">The current version of the code associated with this paper that was used to generate the Figures is available from github at   <uri>https://github.com/danlunt1976/DeepMIP-Eocene-p2</uri> under the GNU General Public License version 3. The exact version of this code and files associated with this paper are archived on Zenodo at <ext-link xlink:href="https://doi.org/10.5281/zenodo.21065940" ext-link-type="DOI">10.5281/zenodo.21065940</ext-link> <xref ref-type="bibr" rid="bib1.bibx46" id="paren.206"/> and <ext-link xlink:href="https://doi.org/10.5281/zenodo.21066096" ext-link-type="DOI">10.5281/zenodo.21066096</ext-link> respectively <xref ref-type="bibr" rid="bib1.bibx47" id="paren.207"/>. The latest versions are archived on Zenodo at <ext-link xlink:href="https://doi.org/10.5281/zenodo.17887456" ext-link-type="DOI">10.5281/zenodo.17887456</ext-link> and <ext-link xlink:href="https://doi.org/10.5281/zenodo.17899194" ext-link-type="DOI">10.5281/zenodo.17899194</ext-link> respectively. The code used to generate the new paleogeography, and a utility for rotating fields between reference frames, is available from <uri>https://github.com/nickywright/deepmip-eocene-p2-paleogeography</uri>. The exact version of this code and utility are archived on Zenodo at <ext-link xlink:href="https://doi.org/10.5281/zenodo.20769472" ext-link-type="DOI">10.5281/zenodo.20769472</ext-link> <xref ref-type="bibr" rid="bib1.bibx93" id="paren.208"/>.</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d2e3803">DJL conceived the paper and wrote the first draft. NMW produced the new DeepMIP-Eocene Phase 2 paleogeography boundary conditions, with input from BV. JB, US, and DH produced the new DeepMIP-Eocene Phase 2 vegetation boundary conditions, with input from TH.  JWBR provided input to the CO<sub>2</sub> reconstruction. All authors contributed to the writing of the paper.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d2e3818">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d2e3824">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. The authors bear the ultimate responsibility for providing appropriate place names. Views expressed in the text are those of the authors and do not necessarily reflect the views of the publisher.</p>
  </notes><ack><title>Acknowledgements</title><p id="d2e3830">Daniel J. Lunt thanks NERC grant SWEET (NE/P01903X/1), NERC grant DeepMIP (NE/N006828/1), and EU grant Past2Future (Grant Agreement 101184070). Daniel J. Lunt also acknowledges support provided through an NCAR affiliate scientist appointment and a CAS PIFI at XTBG and KIB. David K. Hutchinson acknowledges support from Australian Research Council grant DE220100279. Ulrich Salzmann acknowledges NERC grant NE/P019137/1. Gordon N. Inglis was supported by a Royal Society Dorothy Hodgkin Fellowship (DHF<inline-formula><mml:math id="M146" display="inline"><mml:mo>\</mml:mo></mml:math></inline-formula>R1<inline-formula><mml:math id="M147" display="inline"><mml:mo>\</mml:mo></mml:math></inline-formula>191178). Jiang Zhu acknowledges support from the National Science Foundation grant no. 2202777 and 2303567 and Heising-Simons Foundation grant no. 2023-4716. The CESM project is supported primarily by the US National Science Foundation (NSF). This material is based upon work supported by the NSF National Center for Atmospheric Research, which is a major facility sponsored by the NSF under Cooperative Agreement No. 1852977. Natalie Burls acknowledges support from NSF EAR-2303417. Appy Sluijs acknowledges the Netherlands Organization for Scientific Research grant SUMMIT.1.034 EMBRACER. Mattias Green acknowledges support from NERC through MATCH (NE/S009566/1). Agatha M. de Boer acknowledges support from Swedish Research Council grant 2020-04791. Nicky M. Wright acknowledges support from the Australian Research Council grant IE230100098. David R. Greenwood acknowledges support from Natural Sciences and Engineering Research Council (Canada) Discovery grant RGPIN-2016-04337. James W. B. Rae acknowledges funding from the European Research Council under the European Union's Horizon 2020 research and innovation program (grant agreement 805246). David Evans acknowledges support from the Royal Society (award reference URF<inline-formula><mml:math id="M148" display="inline"><mml:mo>\</mml:mo></mml:math></inline-formula>R1<inline-formula><mml:math id="M149" display="inline"><mml:mo>\</mml:mo></mml:math></inline-formula>221735) and UKRI (UKRI Frontier Research Guarantee Proposal (Horizon Europe ERC Starting Grants Guarantee), award reference EP/Y034252/1). Jean-Baptiste Ladant acknowledges funding from French National Research Agency grant ANR-24-CE01-1950 and support from the GENCI (allocation A0190102212).</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d2e3863">This research has been supported by the Natural Environment Research Council (grant no. NE/N006828/1).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d2e3869">This paper was edited by Marko Scholze and reviewed by Chris Brierley and Catherine Bradshaw.</p>
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