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<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "https://jats.nlm.nih.gov/nlm-dtd/publishing/3.0/journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \makeatother\@nolinetrue\makeatletter?><?xmltex \bartext{Model description paper}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-16-6161-2023</article-id><title-group><article-title>A simplified non-linear chemistry transport model for analyzing NO<inline-formula><mml:math id="M1" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> column observations: STILT–NO<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula></article-title><alt-title>STILT–<inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for interpreting satellite columns</alt-title>
      </title-group><?xmltex \runningtitle{STILT--{$\chem{NO_{\mathit{x}}}$} for interpreting satellite columns}?><?xmltex \runningauthor{D.~Wu~et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Wu</surname><given-names>Dien</given-names></name>
          <email>dienwu@caltech.edu</email>
        <ext-link>https://orcid.org/0000-0002-2915-5335</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Laughner</surname><given-names>Joshua L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8599-4555</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff1">
          <name><surname>Liu</surname><given-names>Junjie</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-7184-6594</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4 aff2">
          <name><surname>Palmer</surname><given-names>Paul I.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1487-0969</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Lin</surname><given-names>John C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2794-184X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff6">
          <name><surname>Wennberg</surname><given-names>Paul O.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>School of GeoSciences, University of Edinburgh, Edinburgh, UK</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>National Centre for Earth Observation, University of Edinburgh, Edinburgh, UK</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Department of Atmospheric Sciences, University of Utah, Salt Lake City, UT, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Dien Wu (dienwu@caltech.edu)</corresp></author-notes><pub-date><day>1</day><month>November</month><year>2023</year></pub-date>
      
      <volume>16</volume>
      <issue>21</issue>
      <fpage>6161</fpage><lpage>6185</lpage>
      <history>
        <date date-type="received"><day>2</day><month>May</month><year>2023</year></date>
           <date date-type="accepted"><day>4</day><month>September</month><year>2023</year></date>
           <date date-type="rev-recd"><day>19</day><month>August</month><year>2023</year></date>
           <date date-type="rev-request"><day>15</day><month>May</month><year>2023</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2023 Dien Wu et al.</copyright-statement>
        <copyright-year>2023</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023.html">This article is available from https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e189">Satellites monitoring air pollutants (e.g., nitrogen oxides; <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M5" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M7" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) or greenhouse gases (GHGs) are widely utilized to understand the spatiotemporal variability in and evolution of emission characteristics, chemical  transformations, and atmospheric transport over anthropogenic hotspots. Recently, the joint use of space-based long-lived GHGs (e.g., carbon dioxide; <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and short-lived pollutants has made it possible to improve our understanding of emission characteristics. Some previous studies, however, lack consideration of the non-linear <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry or complex atmospheric transport. Considering the increase in satellite data volume and the demand for emission monitoring at higher spatiotemporal scales, it is crucial to construct a local-scale emission optimization system that can handle both long-lived GHGs and short-lived pollutants in a coupled and effective manner. This need motivates us to develop a Lagrangian chemical transport model that accounts for <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry and fine-scale atmospheric transport (STILT–<inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and to investigate how physical and chemical processes, anthropogenic emissions, and background may affect the interpretation of tropospheric <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns (<inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>).</p>

      <p id="d1e303">Interpreting emission signals from <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> commonly involves either an efficient statistical model or a sophisticated chemical transport model. To balance computational expenses and chemical complexity, we describe a simplified representation of the <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry that bypasses an explicit solution of individual chemical reactions while preserving the essential non-linearity that links <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions to its concentrations. This <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical parameterization is then incorporated into an existing Lagrangian modeling framework that is widely applied in the GHG community. We further quantify uncertainties associated with the wind field and chemical parameterization and evaluate modeled columns against retrieved columns from the TROPOspheric Monitoring Instrument (TROPOMI v2.1). Specifically, simulations with alternative model configurations of emissions, meteorology, chemistry, and inter-parcel mixing are carried out over three United States (US) power plants and two urban areas across seasons. Using the U.S. Environmental Protection Agency (EPA)-reported emissions for power plants with non-linear  <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry improves the model–data alignment in <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (a high bias of <inline-formula><mml:math id="M21" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 10 % on an annual basis), compared to simulations using either the Emissions Database for Global Atmospheric Research (EDGAR) model or without chemistry (bias approaching 100 %). The largest model–data mismatches are associated with substantial biases in wind directions or conditions of slower atmospheric mixing and photochemistry. More importantly, our model development illustrates (1) how <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry affects the relationship between <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in terms of the spatial and seasonal variability and (2) how assimilating <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> can quantify systematic biases in modeled wind directions and emission distribution in prior inventories of <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which laid a foundation for a local-scale multi-tracer emission optimization system.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>National Aeronautics and Space Administration</funding-source>
<award-id>80NM0018D0004</award-id>
<award-id>80NSSC21K1064</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<?pagebreak page6162?><sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e456">Emissions of air pollutants (APs) and greenhouse gases (GHGs) adversely impact urban ecosystems and environments, human health, and the climate via the moderation of energy budgets <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx78" id="paren.1"/>. APs and GHGs are directly inter-connected, considering that they are co-emitted from many combustion sources, suggesting that reductions in GHGs may bring co-benefits in mitigating APs <xref ref-type="bibr" rid="bib1.bibx6 bib1.bibx81 bib1.bibx42" id="paren.2"/>. Although quantifying emissions in GHGs and APs and understanding their underlying drivers at all scales are equally important, emission estimates beyond a county or city become more relevant in addressing policy-relevant topics such as emission mitigation.</p>
      <p id="d1e465">Space-based remote sensors offer an objective perspective to monitoring global air quality and GHGs. These new data enable us to uncover the spatial variability along with the temporal trend and perturbation of anthropogenic emissions. Air-quality-related observations have been among the first to demonstrate the capability of satellite remote sensing to globally diagnose air quality <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx34 bib1.bibx26" id="paren.3"/>; constrain emissions across time, space, and sectors <xref ref-type="bibr" rid="bib1.bibx24 bib1.bibx14 bib1.bibx73 bib1.bibx59" id="paren.4"/>; and evaluate real-world decisions <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx9" id="paren.5"/>. Leveraging satellite observations in understanding the spatiotemporal distribution of emissions within cities is still limited compared to those city total estimates. Data and analysis uncertainty further present the main challenge in extracting robust combustion signals from remotely sensed measurements, and these uncertainties are amplified in attempt to resolve dynamic flows and heterogeneous combustion activities within cities <xref ref-type="bibr" rid="bib1.bibx76 bib1.bibx15 bib1.bibx67" id="paren.6"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e482">A conceptual diagram of our proposed local-scale multi-tracer modeling framework in interpreting column observations. It contains a road map for this study (points 1 through 5). The diagram highlights the key biogenic, physical, and/or chemical processes for quantifying <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> around cities, based on space-based measurements (pixels from red to blue). These include details on the atmospheric conditions (wind speed and planetary boundary layer height for vertical mixing, horizontal mixing, and diffusion lengths); chemical conditions (photolysis rate and <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> regimes and regional versus local oxidant conditions); the spatial distribution of emissions (urban vs. power plant); and sensitivities of the column abundance to individual vertical levels (averaging kernel).</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f01.png"/>

      </fig>

      <p id="d1e533">Making full use of the existing and upcoming satellites that retrieve concentrations of APs and GHGs offers an informative way to target urban emissions from different sources at a policy-relevant scale of a few kilometers. Combining satellite observations of species with different atmospheric lifetimes has enabled studies to diagnose chemical conditions and meteorological processes <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx32" id="paren.7"/>, identify urban plumes, constrain emissions for the tracer of interest <xref ref-type="bibr" rid="bib1.bibx86 bib1.bibx87" id="paren.8"/>, and obtain observation-based ratios between tracers <xref ref-type="bibr" rid="bib1.bibx66 bib1.bibx85 bib1.bibx46" id="paren.9"/> to infer structural changes in combustion activities <xref ref-type="bibr" rid="bib1.bibx61 bib1.bibx49" id="paren.10"/>. In light of the rapid rise in satellite data volume, it is beneficial to have an analysis system that adequately accounts for the important local-scale processes in interpreting the abundance of GHGs and APs in a coupled manner (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). Analogies to such local-scale systems in a global context include the AP-focused Tropospheric Chemistry Reanalysis version 2  <xref ref-type="bibr" rid="bib1.bibx50" id="paren.11"><named-content content-type="pre">TCR-2;</named-content></xref> and the GHG-focused Carbon Monitoring System Flux <xref ref-type="bibr" rid="bib1.bibx22" id="paren.12"><named-content content-type="pre">CMS-Flux;</named-content></xref>. Only a few recent multi-tracer modeling systems aim to bridge <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column measurements <xref ref-type="bibr" rid="bib1.bibx61 bib1.bibx27 bib1.bibx18" id="paren.13"/>, despite limits in their modeling tools (elaborated upon in the next paragraph). In addition, as emphasized in <xref ref-type="bibr" rid="bib1.bibx61" id="text.14"/>, most multi-tracer studies rely on emission ratio or conversion ratio from inventories, which can be problematic.</p>
      <p id="d1e589">In efforts to interpret <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission signatures from satellite observations, most prior studies used either statistical or inversion approaches. The former approach involves the use of a Gaussian plume or exponentially modified Gaussian distribution (EMG) models with input from simple wind information to derive emissions of <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (or a lifetime if for <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) purely from observations in a computationally efficient manner without relying much on prior assumptions of emissions <xref ref-type="bibr" rid="bib1.bibx54 bib1.bibx1" id="paren.15"/>. These statistical approaches only provide a plume-integrated emission estimate that can be sensitive to the input wind speed and chemical lifetime. Multiple satellite overpasses need to be aggregated with wind direction aligned for a robust fit in the EMG model to obtain the emission and lifetimes. It is challenging to infer and evaluate sub-grid-cell variations in emissions. The more sophisticated inverse approach involves the use of a chemical transport model (CTM) that comprehensively accounts for atmospheric transport and chemical transformation and a coupled inversion or data assimilation system <xref ref-type="bibr" rid="bib1.bibx43 bib1.bibx59" id="paren.16"><named-content content-type="pre">e.g.,</named-content></xref>. CTMs are, however, computationally expensive and often involve hundreds of species and their coupling reactions. Most CTMs used in AP-related studies are Eulerian models, which may suffer from complications caused by rigid model grids <xref ref-type="bibr" rid="bib1.bibx82 bib1.bibx75" id="paren.17"/>. Motivated by these approaches that rely on a constant lifetime or solve for individual chemical reactions, we have built a modeling framework to balance the advantages and imperfections – i.e., to simplify the chemical transformation process that preserves the non-linear relationship between <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and the observed concentration field, together with a high-resolution atmospheric transport using a Lagrangian particle dispersion model (LPDM).</p>
      <?pagebreak page6163?><p id="d1e670">LPDMs have been increasingly utilized for emission estimates over the past few decades. For instance, the Stochastic Time-Inverted Lagrangian Transport model <xref ref-type="bibr" rid="bib1.bibx39" id="paren.18"><named-content content-type="pre">STILT;</named-content></xref> building upon HYSPLIT <xref ref-type="bibr" rid="bib1.bibx69" id="paren.19"/> has been well adapted to analyze emission signals from all sorts of measurement platforms. STILT was designed to better describe the movement of air parcels only relevant to an observation site and explicitly provide the source–receptor relationship (i.e., the Jacobian matrix) to facilitate efficient atmospheric inversions for optimizing emissions. Besides, LPDMs themselves possess inherent numerical and computational advantages, such as avoiding artificial smoothing of concentration fields by spurious numerical diffusion in confined model boxes <xref ref-type="bibr" rid="bib1.bibx82 bib1.bibx40" id="paren.20"/>. More importantly, the Lagrangian transport perspective is intuitively coupled with box models that handle chemical reactions. Noticeable examples include STOCHEM <xref ref-type="bibr" rid="bib1.bibx8" id="paren.21"/>, ATLAS <xref ref-type="bibr" rid="bib1.bibx82" id="paren.22"/>, CLaMS v2.0 <xref ref-type="bibr" rid="bib1.bibx29" id="paren.23"/>, and HYSPLIT-based variations, including HYSPLIT CheM <xref ref-type="bibr" rid="bib1.bibx68" id="paren.24"/>, ELMO-2 for ozone <xref ref-type="bibr" rid="bib1.bibx72" id="paren.25"/>, and STILT-Chem <xref ref-type="bibr" rid="bib1.bibx79" id="paren.26"/>. These Lagrangian chemical models describe the chemical reactions of each species or lumped group with similar functional groups to calculate chemical transformation along trajectories but vary in the complexity of implemented chemistry and parameterization for turbulent mixing and numerical diffusion. Despite these prior modeling efforts, Lagrangian chemical models are more often adopted to inform the origins of APs but are less commonly used to constrain emissions. Such under-appreciation is in part a result of the heavy computational expenses in solving chemical changes at a high frequency via ordinary differential equations (similar to most Eulerian CTMs) and the reliance on external meteorological fields.</p>
      <p id="d1e703">To reduce computational costs in dealing with complex chemistry, studies have proposed machine learning techniques or defaulted to a constant-lifetime assumption as a shortcut. Machine learning techniques have been applied to approximate the chemical mechanisms <xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx21" id="paren.27"/>, predict the OH field with observational constraint <xref ref-type="bibr" rid="bib1.bibx90" id="paren.28"/>, and calculate emissions <xref ref-type="bibr" rid="bib1.bibx19" id="paren.29"/>. Other studies have assumed a constant first-order lifetime to estimate <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and emission ratios between <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx18" id="paren.30"/>. However, unlike chemically passive species such as <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, the chemical tendency of <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is not independent of atmospheric advection and turbulent mixing because of the chemically driven non-linearity between the <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime and the <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations <xref ref-type="bibr" rid="bib1.bibx34" id="paren.31"/>. More specifically, during the day, <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is lost through two more permanent pathways of (1) <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M50" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> to nitric acid and (2) <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M53" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> peroxy radicals (<inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), with a minor branch in producing alkyl nitrates or ANs (point 3 in Fig. <xref ref-type="fig" rid="Ch1.F1"/>). The two pathways compete with one another and either may dominate, depending on the chemical conditions. Such non-linear dependence of the <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime or chemical tendency with the <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration must be accounted for to estimate the <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions from atmospheric <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations. Such non-linearity will affect the interpretation of tracer-to-tracer emission ratios from observed enhancement ratios.</p>
      <p id="d1e919">In this study, we present a non-linear modeling framework, STILT–<inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, to simulate tropospheric column-averaged <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio (<inline-formula><mml:math id="M61" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) as retrieved from the TROPOspheric Monitoring Instrument (TROPOMI). Note that initial <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column density (VCD; <inline-formula><mml:math id="M63" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) is converted to <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M65" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) by dividing by a dry air VCD. The dry air VCD is calculated by integrating a profile of the ideal gas number density of air minus a modeled water vapor profile. As illustrated in Fig. <xref ref-type="fig" rid="Ch1.F1"/>, the overarching goal of this framework is to facilitate emission optimizations over global anthropogenic hotspots by simulations of the concentrations of key trace gases of <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the local scale. To do so, the current work aims to equip the STILT model with simplified chemistry that avoids explicit calculations of chemical reactions, while preserving the non-linearity that ties the <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations to its emission (point 3 in Fig. <xref ref-type="fig" rid="Ch1.F1"/>). The proposed STILT–<inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> framework is comprised of four components, outlined below, which correspond, respectively, to points 1 to 4 in Fig. <xref ref-type="fig" rid="Ch1.F1"/> and will be coupled to an upcoming non-linear flux inversion module (point 6). <list list-type="order"><list-item id="Ch1.I1.i1">
      <p id="d1e1066">The HYSPLIT–STILT core resolves fine-scale atmospheric advection and turbulence and calculates the sensitivity of concentration anomalies to upwind fluxes (footprint) <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx12 bib1.bibx45" id="paren.32"/>, with an additional simplified inter-parcel mixing scheme (Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>).</p></list-item><list-item>
      <p id="d1e1075">A column-weighting module to simulate atmospheric columns (and uncertainties) that incorporates pressure weighting functions and  retrieval-specific averaging kernel profiles <xref ref-type="bibr" rid="bib1.bibx84" id="paren.33"><named-content content-type="pre">X-STILT;</named-content></xref>.</p></list-item><list-item id="Ch1.I1.i3">
      <p id="d1e1084">A simplified chemistry module that describes the <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency (Sect. <xref ref-type="sec" rid="Ch1.S2.SS1"/>) and how much <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is presented as <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (i.e., <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio; Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/>).</p></list-item><list-item>
      <p id="d1e1148">An error analysis module that quantifies errors and biases in wind fields and chemical parameters (Sect. <xref ref-type="sec" rid="Ch1.S3"/>), following the methods initially proposed in <xref ref-type="bibr" rid="bib1.bibx38" id="text.34"/> and <xref ref-type="bibr" rid="bib1.bibx84" id="text.35"/>, which can be used for future flux inversions.</p></list-item></list></p>
      <p id="d1e1159">We illustrate the skill of this framework using comparisons of modeled <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and those diagnosed from TROPOMI over three United States (US) power plants and two cities across seasons (Sect. <xref ref-type="sec" rid="Ch1.S4"/>). Last, we discuss possible future advances in Sect. <xref ref-type="sec" rid="Ch1.S5.SS3"/> and demonstrate the benefits of applying this framework, especially on the quantification of <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions, emission ratios between <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and near-field wind biases in Sects. <xref ref-type="sec" rid="Ch1.S5.SS1"/> and <xref ref-type="sec" rid="Ch1.S5.SS2"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1218">A schematic of STILT–<inline-formula><mml:math id="M80" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for simulating concentrations in three steps. Step 1 is a routine backward-time calculation that records the locations of air parcels at each timestamp (<inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>) of 1 <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> or shorter and their influence from potential fluxes (footprint). Step 2 is to calculate the initial condition for which the trajectory endpoint at time <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is given a concentration from 4D fields (e.g., TM5 in the case of <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). Step 3 is a forward-time concentration calculation that updates change in concentrations due to emissions, net chemical losses, and inter-parcel mixing along each trajectory at a timescale of <inline-formula><mml:math id="M85" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula>. To clarify, Step 3 makes use of trajectories originating from a column receptor stretching from the surface to 2 <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, as generated from Step 1.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f02.png"/>

      </fig>

</sec>
<?pagebreak page6164?><sec id="Ch1.S2">
  <label>2</label><?xmltex \opttitle{STILT--{$\protect\chem{NO_{\mathit{x}}}$} model descriptions}?><title>STILT–<inline-formula><mml:math id="M88" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> model descriptions</title>
      <p id="d1e1322">Building upon the HYSPLIT–STILT atmospheric transport core, the STILT–<inline-formula><mml:math id="M89" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> framework traces the origin of the atmospheric column observed by the satellite and calculates changes in the  <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations due to emissions, inter-parcel mixing, and chemical transformations at the (sub-)minute scale. The STILT–<inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> simulations are conducted in three steps (Fig. <xref ref-type="fig" rid="Ch1.F2"/>).</p>
      <p id="d1e1360">First, the backward-trajectory mode records the latitude, longitude, and pressure coordinates of air parcels originating from the same atmospheric column sampled by satellites and being driven by the Eulerian meteorological fields (Step 1 in Fig. <xref ref-type="fig" rid="Ch1.F2"/>). In this work, we test two meteorological fields when they are available for each examined region, namely from the Global Forecast System (GFS0p25) and the High-Resolution Rapid Refresh (HRRR), with a respective horizontal grid spacing of 0.25<inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and 3 <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx63" id="paren.36"/>. As most anthropogenic and all soil sources of <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are from the surface, air parcels are evenly distributed and released from the surface to 2 <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, which is slightly above the typical planetary boundary layer (PBL) height <xref ref-type="bibr" rid="bib1.bibx84" id="paren.37"/>. To evaluate how representative enhancements between 0 and 2 <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> are compared to the total tropospheric column enhancements (which can include sources from lightning and aviation), we analyzed vertical distributions of <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratios from TCR-2 <xref ref-type="bibr" rid="bib1.bibx50" id="paren.38"/>. TCR-2 is a global chemical reanalysis that includes full physical and chemical processes for various species and assimilates multiple satellite products of <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, ozone, <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. As a result, the monthly mean <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations over the  2<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M103" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math id="M104" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> area around the top 1000 cities is quite insignificant for pressure <inline-formula><mml:math id="M105" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 700 <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula> when compared to huge signals within the PBL (Fig. S1 in the Supplement). Although 0 to 2 <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> columns include most anthropogenic enhancements over urban areas, we subtracted a local <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> background from the total tropospheric columns to minimize the non-anthropogenic influences with a plume detection algorithm, following <xref ref-type="bibr" rid="bib1.bibx30" id="text.39"/>. The model–data comparisons with background subtracted are discussed in Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/>.</p>
      <p id="d1e1537">After being released from a given TROPOMI sounding at the overpass time (<inline-formula><mml:math id="M109" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 13:00 local time for nadir soundings), air parcels are dispersed backward in time for 12 <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> (time at <inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in Fig. <xref ref-type="fig" rid="Ch1.F2"/>). Step 1 also provides the STILT footprint (<inline-formula><mml:math id="M112" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) per air parcel per timestamp <xref ref-type="bibr" rid="bib1.bibx39" id="paren.40"/>. The STILT footprint of a given air parcel is proportional to the time this parcel spends in a small area (of <inline-formula><mml:math id="M113" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) and describes how the downwind concentration may be altered if this air parcel is influenced by emissions. A much more complete description of STILT can be found in <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx12" id="text.41"/>. The footprint concept, by definition, relies on atmospheric transport and only accounts for concentration changes due to emissions but not chemical transformations.</p>
      <?pagebreak page6165?><p id="d1e1632">Next, <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations at the endpoints of the model trajectory are extracted from the Tracer Model version 5, massively parallel version (TM5-MP) to serve as the initial conditions (Step 2 in Fig. <xref ref-type="fig" rid="Ch1.F2"/>). TM5-MP is an auxiliary dataset in which the <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles serve as the prior knowledge facilitating the stratosphere–troposphere separation in Level 2 (L2) <inline-formula><mml:math id="M117" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval <xref ref-type="bibr" rid="bib1.bibx77" id="paren.42"/>. Here, we simply assume that most <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is presented as <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at nighttime, despite the apparent caveat for neglecting <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> chemistry and heterogenous reactions involving <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1723">Once <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is initialized at the time <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> for the endpoint of every trajectory, we proceed with Step 3 (Fig. <xref ref-type="fig" rid="Ch1.F2"/>) to estimate the changes in concentrations due to emissions, chemical transformation, and inter-particle mixing. Mathematically, the concentration per air parcel per timestamp (<inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) relies on that from the last timestamp, following Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>):
          <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M125" display="block"><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mtext>p,t</mml:mtext><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>emis,p,t</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>E</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>chem,p,t</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>mix,p,t</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">p</mml:mi><mml:mtext>ngb</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">t</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
        where the time interval for updating concentrations, <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>, is defaulted to 1 <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> or reduced to a sub-minute value when <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> becomes nonphysically negative to ensure numerical stability. Concentration gains from emissions, <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>emis</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, result from multiplying STILT-parcel-specific footprints (<inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) with prior emissions (<inline-formula><mml:math id="M131" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula>) from EDGARv6.1 <xref ref-type="bibr" rid="bib1.bibx51" id="paren.43"/> and the U.S. Environmental Protection Agency (EPA; <xref ref-type="bibr" rid="bib1.bibx74" id="altparen.44"/>) for power plant cases in this study. We neglect soil <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, given the relatively small contributions in cities. Unlike sophisticated CTMs which resolve the chemical reactions of an individual or lumped groups of species, concentration anomalies due to chemical reactions, <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>chem</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, are solved in an explicit first-order fashion involving a net chemical tendency, with a unit of parts per billion per hour (<inline-formula><mml:math id="M134" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Such a chemical tendency (<inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. <xref ref-type="disp-formula" rid="Ch1.E2.4"/>) is parameterized offline as functions of <inline-formula><mml:math id="M136" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations and solar zenith angles, <inline-formula><mml:math id="M137" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula>, which is explained in Sect. <xref ref-type="sec" rid="Ch1.S2.SS1"/>. The final term, <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>mix,p,t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, denotes the concentration exchange between a given air parcel and its volumetric neighborhood (<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mtext>ngb</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>), which is explained in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>.</p>
      <?pagebreak page6166?><p id="d1e2059">Following these steps, we obtain the modeled <inline-formula><mml:math id="M140" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio for every trajectory released between the surface and 2 <inline-formula><mml:math id="M141" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, based on <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS1"/>. To compare against TROPOMI tropospheric <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns, we account for the fraction of <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> that is present as <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/>) and properly weight the modeled <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from different altitudes, according to the pressure weighting function and averaging kernel profiles, following <xref ref-type="bibr" rid="bib1.bibx84" id="text.45"/>. Such an approach in applying averaging kernel (Fig. <xref ref-type="fig" rid="Ch1.F1"/>) to the modeled profiles is equivalent to a more commonly used approach, which re-calculated the retrieved <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, as seen from the CTM, by re-calculating the air mass fraction based on modeled <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> profiles, as investigated in <xref ref-type="bibr" rid="bib1.bibx15" id="text.46"/>. In addition, we evaluate the modeled meteorology and chemistry using a separate set of STILT–<inline-formula><mml:math id="M149" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> simulations with true <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions from the EPA for three US power plants (Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/>).</p>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><?xmltex \opttitle{{$\protect\chem{NO_{\mathit{x}}}$} net chemical tendency, $R_{{{\protect\chem{NO_{\mathit{x}}}}}}$, and uncertainty}?><title><inline-formula><mml:math id="M151" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> net chemical tendency, <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and uncertainty</title>
      <p id="d1e2229">Inspired by the theoretical non-linear curves of <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetimes as functions of <inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column density and volatile organic compound reactivity (<inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and based on a box model in <xref ref-type="bibr" rid="bib1.bibx34" id="text.47"/>, we extract similar non-linear parameterizations using the Weather Research and Forecasting model coupled with Chemistry <xref ref-type="bibr" rid="bib1.bibx16" id="paren.48"><named-content content-type="pre">WRF-Chem v4.0.2;</named-content></xref>. Focusing primarily on polluted environments, we carried out WRF-Chem simulations for three mid-latitude cities and extracted model outputs from a 2<inline-formula><mml:math id="M156" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M157" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> region centered around each city. Three cities, namely Los Angeles in the USA, Shanghai in China, and Madrid in Spain, represent typical megacities in North America, Asia, and Europe. Their varied climatic conditions and sectoral emissions of <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, VOC, and GHGs provide a holistic view of the variability in the <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency. While our analyses extended to power plants and cities beyond these three training sites when compared to TROPOMI data (Sect. <xref ref-type="sec" rid="Ch1.S4"/>), it helps assess the broader applicability of our chemical parameterizations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e2325">A diagram of <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> net chemical loss tendency (<inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) as functions of the <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration (<inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and solar zenith angle (<inline-formula><mml:math id="M166" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula>). The net loss timescale was first calculated for each 12 <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> grid cell of all WRF-Chem simulations for three cities (with specific model setups summarized in Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>) and then aggregated into multiple bins of <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration (<inline-formula><mml:math id="M169" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>). The <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> bins are equally divided in the logarithmic space. The solid dots and error bars denote the average and standard deviation of <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> within each combined <inline-formula><mml:math id="M172" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> bin. For the net loss timescale, only positive values are displayed, given the logarithmic scale of the <inline-formula><mml:math id="M174" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis in panel <bold>(b)</bold>, and data points with values <inline-formula><mml:math id="M175" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 72 <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> are simply treated as infinite.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f03.png"/>

        </fig>

      <p id="d1e2515">Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/> describes our specific WRF-Chem settings used to generate lookup tables of <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical loss tendencies, which we will refer to as <inline-formula><mml:math id="M178" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves (Fig. <xref ref-type="fig" rid="Ch1.F3"/>). Of the WRF-Chem settings, the chosen chemical mechanism <xref ref-type="bibr" rid="bib1.bibx70" id="paren.49"><named-content content-type="pre">Regional Acid Deposition Model or RADM2;</named-content></xref> is the most relevant to the accuracy of these <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves. Despite uncertainties in these WRF-Chem simulations, what matters the most for reproducing the <inline-formula><mml:math id="M180" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> tendency is how <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> varies with, for example, the solar zenith angle (SZA) and ozone, rather than the exact accuracy of <inline-formula><mml:math id="M182" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations themselves (from WRF-Chem). Thus, non-chemical components (prior emissions, boundary conditions, and physical processes) in this specific WRF-Chem configuration do not necessarily need to be perfect or optimized against observations. We clarify that WRF-Chem simulations had been performed to facilitate the parameterization of the <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> tendency within STILT–<inline-formula><mml:math id="M184" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> but are not required when running STILT–<inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e2629">By leveraging WRF-Chem's chemical diagnostic capability, we derive the net chemical tendency of <inline-formula><mml:math id="M186" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> within each hour (<inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M188" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) for every model grid within the lower 12 vertical levels (<inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>). <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is calculated specifically from the cumulative changes in <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M192" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations, solely due to chemical reactions (i.e., chem_no2 and chem_no in WRF-Chem registry), following  Eq. (<xref ref-type="disp-formula" rid="Ch1.E2"/>): <?xmltex \hack{\newpage}?><?xmltex \setcounter{equation}{1}?>

                <disp-formula id="Ch1.E2" specific-use="gather" content-type="subnumberedsingle"><mml:math id="M193" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E2.3"><mml:mtd><mml:mtext>2a</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>h</mml:mi></mml:munderover><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mspace width="0.25em" linebreak="nobreak"/><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>h</mml:mi></mml:munderover><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>h</mml:mi></mml:munderover><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2.4"><mml:mtd><mml:mtext>2b</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>h</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>P</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>h</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>L</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>h</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>h</mml:mi></mml:msubsup><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:mi>h</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where the model hour <inline-formula><mml:math id="M194" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> denotes the start time of each hour interval in the WRF-Chem outputs, and <inline-formula><mml:math id="M195" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> denotes the index of model vertical levels (i.e., from 1 to 12). <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>h</mml:mi></mml:msubsup><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> describes the cumulative net changes to the <inline-formula><mml:math id="M197" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration, given the chemical reactions from the initial model hour <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3126">WRF-Chem pixel-specific hourly <inline-formula><mml:math id="M199" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rate changes, <inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, are then grouped by both SZA (<inline-formula><mml:math id="M201" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula>) bins, with a spacing of 2<inline-formula><mml:math id="M202" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, and <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> bins, with equal spacing, in <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mtext>log</mml:mtext><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> scale (Fig. <xref ref-type="fig" rid="Ch1.F3"/>a). <inline-formula><mml:math id="M205" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> is chosen, given the close relation to solar radiation under clear-sky conditions, and controls the photolysis frequency of ozone and <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> production <xref ref-type="bibr" rid="bib1.bibx62" id="paren.50"/> when the ozone and water vapor abundance remain unchanged. Because the intention in using STILT–<inline-formula><mml:math id="M207" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is to inform the relationship between emission sources and satellite <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns, which are almost always filtered to remove cloudy scenes (i.e., quality assurance of <inline-formula><mml:math id="M209" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.7), the choice of <inline-formula><mml:math id="M210" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> without considering cloud coverage is reasonable. Specifically, these net chemical changes explicitly contain all <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-relevant reactions within the WRF-Chem and RADM2 scheme, such as the recycling of <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from oxidized odd-nitrogen species like peroxyacetyl nitrate.</p>
      <p id="d1e3276">The above grouping procedure of <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is based on a finite number of bins of <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M215" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> unavoidably reduces the variability in the <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> that were directly derived from WRF-Chem. To assess the extent to which the <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> variability can be explained by the selected binning feature variables, we performed a sensitivity test to quantify the deviation of bin-averaged <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> from the initial <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Generally, the <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> variability is better preserved over polluted regimes with a higher-<inline-formula><mml:math id="M221" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level <inline-formula><mml:math id="M222" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> than over low-<inline-formula><mml:math id="M224" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> regimes (Fig. S2a and b in the Supplement). Choosing <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> alone better explains the <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> variability than choosing SZA or air temperature alone. Including additional variables (e.g., air temperature, <inline-formula><mml:math id="M227" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio, and <inline-formula><mml:math id="M229" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) on top of our default choice of SZA and <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> marginally improves the prediction of <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, except for the inclusion of ozone. However, estimating ozone remains a challenging problem; thereby, ozone is not included as a feature variable in this study.</p>
      <p id="d1e3524">As a net result, <inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is mostly negative during the day, meaning that <inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is removed from the system. <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is large, with small spread at low <inline-formula><mml:math id="M235" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> of <inline-formula><mml:math id="M236" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 20<inline-formula><mml:math id="M237" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and gradually decreases during the day. <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> becomes positive as it approaches the nighttime hours (Fig. S2c), and its variability peaks during sunset when <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>∈</mml:mo><mml:mo>[</mml:mo><mml:mn mathvariant="normal">80</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>,</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, with a<?pagebreak page6167?> fractional uncertainty of over 100 % (blue error bars in Fig. <xref ref-type="fig" rid="Ch1.F3"/>a) when considering the transition to nighttime chemistry. When focusing on the daytime portion with <inline-formula><mml:math id="M240" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M241" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 70<inline-formula><mml:math id="M242" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and  <inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M244" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M245" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, the spread in <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> among the WRF-Chem urban pixels ranges from 12.2 % to 67.9 %, according to varied <inline-formula><mml:math id="M247" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (red to yellow error bars in  Fig. <xref ref-type="fig" rid="Ch1.F3"/>a), with an average uncertainty of 41.2 %. When focusing on the nighttime portion with <inline-formula><mml:math id="M249" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M250" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 70<inline-formula><mml:math id="M251" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M253" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, the spread in <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> spans from 27.9 % to over 100 %, with an average uncertainty of 96.3 % that is largely skewed by the high uncertainty around the dusk hours. Last, the average daytime uncertainty in the <inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> tendency at medium to high <inline-formula><mml:math id="M257" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations (i.e., 41.2 %) will be propagated into chemical uncertainties in <inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> for cases of power plants and urban areas, which is further described in Sect. <xref ref-type="sec" rid="Ch1.S3"/>.</p>
      <p id="d1e3836">Given the further fluctuation in <inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, we define a net loss timescale (<inline-formula><mml:math id="M261" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>) as <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msub><mml:mtext>ts</mml:mtext><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and distinguish it from the conventional chemical lifetime that only accounts for chemical losses. For reference, a positive (or negative) timescale corresponds to a net loss (or production) of <inline-formula><mml:math id="M263" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F3"/>b). The contribution from <inline-formula><mml:math id="M264" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production is minor during noon hours. The non-linear dependence of <inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:msub><mml:mtext>ts</mml:mtext><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is largely driven by several <inline-formula><mml:math id="M267" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss pathways (predominately by the loss processes of <inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M269" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>  <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> and the formation of alkyl nitrates during the daytime and by the <inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> chemistry and heterogeneous chemistry at nighttime; Fig. S2). Here, we do not differentiate between the <inline-formula><mml:math id="M272" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves by <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, despite its critical role in determining the turning point when <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is mainly lost to either nitric acid or alkyl nitrates <xref ref-type="bibr" rid="bib1.bibx34" id="paren.51"/>. We instead perform a sensitivity study of the impact on <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves for three <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> intervals in Sect. <xref ref-type="sec" rid="Ch1.S5.SS3"/>. Note that these <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves should be considered to be a first-order approximation and can certainly be improved upon to evaluate more complex parameterization (Sect. <xref ref-type="sec" rid="Ch1.S5.SS3"/>). When it comes to calculating chemical changes within STILT–<inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> per air parcel per timestamp (i.e., <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>chem,p,t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. <xref ref-type="disp-formula" rid="Ch1.E1"/>), such a loss timescale is looked up according to parcel-specific <inline-formula><mml:math id="M280" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> to enable the non-linearity core (Fig. <xref ref-type="fig" rid="Ch1.F2"/>; bottom panel).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><?xmltex \opttitle{{$\protect\chem{NO_{{2}}}$}\,:\,{$\protect\chem{NO_{\mathit{x}}}$} ratio}?><title><inline-formula><mml:math id="M282" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M283" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio</title>
      <p id="d1e4175">As only the vertical column density of <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is retrieved, the fraction of <inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> present as <inline-formula><mml:math id="M286" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> as TROPOMI passed over is an important component of our analysis. Prior studies estimated such ratios using a constant value (e.g., 0.75) at noon hours across seasons, with a 10 % uncertainty <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx2 bib1.bibx15" id="paren.52"/>, monthly mean climatology of ozone from reanalysis <xref ref-type="bibr" rid="bib1.bibx3" id="paren.53"/>, and CTMs. <inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is primarily emitted as <inline-formula><mml:math id="M288" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> but converted to <inline-formula><mml:math id="M289" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> via the reaction with ozone. During the daytime, <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is photolyzed back to <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> with a photolysis frequency, <inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Thus, the <inline-formula><mml:math id="M293" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M294" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio scales with the ratio of ozone and <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. <xref ref-type="disp-formula" rid="Ch1.E5.6"/>).</p>
      <?pagebreak page6168?><p id="d1e4322">Considering the close coupling between <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, their sum <inline-formula><mml:math id="M298" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E5.7"/>) is a key indicator of the atmospheric oxidant capability for understanding the urban air chemistry <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx13" id="paren.54"/> and informing chemical dynamics <xref ref-type="bibr" rid="bib1.bibx57 bib1.bibx36" id="paren.55"><named-content content-type="pre">e.g., during the COVID-19 pandemic;</named-content></xref>. <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels within the PBL can be regarded as a <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-independent component related to regional ozone inflow plus a <inline-formula><mml:math id="M301" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-dependent component that varies non-linearly with local <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M303" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> conditions <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx23" id="paren.56"/>. The complexity in the local <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> non-linearity is caused by key reactions behind <inline-formula><mml:math id="M306" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves, which are discussed in Sect. <xref ref-type="sec" rid="Ch1.S5.SS3.SSS1"/>.</p>
      <p id="d1e4463">For simplification, we prescribed a typical <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level of 50 <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> in the first version of STILT–<inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and calculated the <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio via Eq. (<xref ref-type="disp-formula" rid="Ch1.E5"/>), assuming a steady state.<?xmltex \setcounter{equation}{2}?>

                <disp-formula id="Ch1.E5" specific-use="align" content-type="subnumberedsingle"><mml:math id="M312" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E5.6"><mml:mtd><mml:mtext>3a</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>J</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>)</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">A</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>P</mml:mi><mml:mo>)</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E5.7"><mml:mtd><mml:mtext>3b</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>+</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> relies on <inline-formula><mml:math id="M314" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> for daytime, and the reaction rate coefficient of <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) is a function of the air temperature <inline-formula><mml:math id="M318" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">A</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and pressure <inline-formula><mml:math id="M319" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F2"/>; bottom panel). The inclusion of <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in calculating the <inline-formula><mml:math id="M321" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M322" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio is to avoid a non-physical infinite conversion of <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M324" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at high-emitting sources, following the titration of the ambient ozone. Sensitivity tests were performed to reveal how biases in the prescribed <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level may modify the modeled <inline-formula><mml:math id="M326" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Sect. <xref ref-type="sec" rid="Ch1.S3"/>). Typical <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M328" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratios over the examined mid-latitude targets across seasons are summarized in Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/>. In the future, satellite observations of tropospheric ozone could be used to add the additional complexity of variable <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Inter-parcel mixing</title>
      <p id="d1e4862">Eulerian chemical models often suffer from mixing or numerical diffusion that is too strong within their model grid, while Lagrangian models (equivalent to those possessing extremely high spatial resolution) may lack any mixing between air parcels that are normally assumed to be independent of one another <xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx4" id="paren.57"/>. Such a lack of mixing has a negligible impact on the passive tracers, as mixing alters only the spatial distribution of concentration among air parcels but not the resultant concentration averaged across parcels at the receptor. However, non-linear processes alter both the spatial distribution of parcel-specific concentrations and the average resultant concentration. As a result, the calculation of the total <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> tendency will be sensitive to how inter-parcel mixing is parameterized. Common ways to realize turbulence mixing are through (1) stochastic processes followed by the exchanging or averaging properties of air parcels found within a certain mixing length <xref ref-type="bibr" rid="bib1.bibx79" id="paren.58"><named-content content-type="pre">e.g., STILT-Chem;</named-content></xref>, (2) implemented deformation-driven and instability-driven schemes that rely on atmospheric stability and wind shear or stress characteristics <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx29" id="paren.59"><named-content content-type="pre">e.g., CLaMS;</named-content></xref>, and (3) diffusion approaches that require the vertical gradient of concentrations <xref ref-type="bibr" rid="bib1.bibx58 bib1.bibx72" id="paren.60"><named-content content-type="pre">e.g., CiTTyCAT and ELMO-2;</named-content></xref>.</p>
      <p id="d1e4894">Here we follow the STILT-Chem approach to enable a process of exchanging concentrations per timestamp among the air parcels in close proximity to each other (<inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>mix</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> term back in Eq. <xref ref-type="disp-formula" rid="Ch1.E1"/>), which smooth the horizontal gradient of concentrations among those air parcels. Specifically, at the timestamp of <inline-formula><mml:math id="M332" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>, the concentration for a given air parcel <inline-formula><mml:math id="M333" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> is updated, based on the concentration gradient between <inline-formula><mml:math id="M334" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> and its neighborhood according to a mixing timescale (<inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>mix</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) within a grid volume, with a mixing length scale of a horizontal area and the mixed layer height for the height as follows:
            <disp-formula id="Ch1.E8" content-type="numbered"><label>4</label><mml:math id="M336" display="block"><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext><mml:mo>′</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub><mml:mi>exp⁡</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>mix</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi mathvariant="normal">p</mml:mi><mml:mtext>ngb</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">t</mml:mi></mml:mrow></mml:msub><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>mix</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M337" display="inline"><mml:mrow><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>mix</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> implies the degree of horizontal mixing, and <inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> represents the average concentration among air parcels within the mixing volume. The update of <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> from <inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>p,t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> responds to <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mtext>mix</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>). A relatively fast mixing timescale of 3 <inline-formula><mml:math id="M342" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> and a horizontal mixing length of 1 <inline-formula><mml:math id="M343" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> is used for testing the mixing impact on modeling <inline-formula><mml:math id="M344" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Although we neglect the mixing in the free troposphere and the mixing between the mixed layer and the free troposphere in this first model version, we tested a spectrum of the horizontal mixing scales and include possible future improvements (Sect. <xref ref-type="sec" rid="Ch1.S5.SS3.SSS2"/>).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><?xmltex \opttitle{Model uncertainty in {$\protect\chem{tNO_{{2}}}$} due to wind and chemistry}?><title>Model uncertainty in <inline-formula><mml:math id="M345" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> due to wind and chemistry</title>
      <?pagebreak page6169?><p id="d1e5163">As atmospheric transport and chemical transformation are the two main components in any CTMs, we assess how uncertainties tied to the modeled wind field, <inline-formula><mml:math id="M346" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss timescale, and <inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M348" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio may contribute to uncertainties in <inline-formula><mml:math id="M349" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (in <inline-formula><mml:math id="M350" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>).
          <disp-formula id="Ch1.E9" content-type="numbered"><label>5</label><mml:math id="M351" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>sim</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>trans</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>ts</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>nn</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Here we briefly describe how various <inline-formula><mml:math id="M352" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> uncertainties were approximated, based on our understanding of errors in respective model parameters or inputs (i.e., wind error, <inline-formula><mml:math id="M353" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency, or <inline-formula><mml:math id="M354" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels). To approximate the <inline-formula><mml:math id="M355" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> uncertainties due to transport errors, we followed previous approaches to first assess the GFS- and HRRR-modeled wind profiles against radiosonde; calculate respective error statistics including wind error, correlation time, and length scales; and, last, propagate wind error statistics into errors in column concentrations. Mathematically, <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>trans</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E9"/>) is derived from the difference in the variance of STILT–<inline-formula><mml:math id="M357" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> air-parcel-specific <inline-formula><mml:math id="M358" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations between the original simulation and a second simulation with wind error <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx84" id="paren.61"/>. The derivations of modeled wind errors and contributions to <inline-formula><mml:math id="M359" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> errors are elaborated in Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>. To evaluate the impact due to errors associated with chemical parameters, we perturbed the <inline-formula><mml:math id="M360" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves or the <inline-formula><mml:math id="M361" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level according to 20 perturbing factors. Perturbed curves or parameters are used to generate 20 new sets of <inline-formula><mml:math id="M362" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fields, of which their respective standard deviation among perturbations serves as the chemical uncertainty (<inline-formula><mml:math id="M363" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) due to <inline-formula><mml:math id="M364" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> net loss timescale and <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M366" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio (<inline-formula><mml:math id="M367" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>nn</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. <xref ref-type="disp-formula" rid="Ch1.E9"/>). These 20 perturbing factors were randomly selected from a normal distribution <inline-formula><mml:math id="M369" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M370" display="inline"><mml:mrow><mml:mi mathvariant="italic">μ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>;</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>param</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>). Here we tested out <inline-formula><mml:math id="M371" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>param</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> of 40 % for <inline-formula><mml:math id="M372" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss timescales, according to uncertainties in the chemical tendency (Fig. <xref ref-type="fig" rid="Ch1.F3"/>) and a <inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>param</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> of 40 % for the <inline-formula><mml:math id="M374" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level (Eqs. <xref ref-type="disp-formula" rid="Ch1.E5"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e5536"><bold>(a)</bold> Demonstrations of best-estimated <inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (TNO2) and their uncertainties (<inline-formula><mml:math id="M376" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) due to random <inline-formula><mml:math id="M377" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> or <inline-formula><mml:math id="M378" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> wind errors (Trans_Error), <inline-formula><mml:math id="M379" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency (Tendency_Error), and <inline-formula><mml:math id="M380" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels (Ox_Error) on 8 December 2020, over the New Madrid power plant (USA), and 23 December 2020, over Phoenix (USA). <bold>(b)</bold> Scaling between uncertainties and mean <inline-formula><mml:math id="M381" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signals over six overpasses for the two targets with smooth splines fitted (crosses with solid lines for tendency errors, stars with dashed lines for <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> errors, and circles with dotted-dashed lines for transport errors). Colors differentiate the sites and TROPOMI overpass times.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f04.png"/>

      </fig>

      <p id="d1e5628">Due to heavy computational expenses in conducting such wind and chemical perturbation analyses for all overpasses and locations, we only ran error analyses for a total of six overpasses over a power plant and a city. To cover the seasonal changes in the <inline-formula><mml:math id="M383" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signals and their uncertainties, overpasses in varied seasons are examined for the New Madrid (USA) power plant on 8 February, 15 June, and 8 December 2020 and Phoenix (USA) on 7 February, 27 May, and 23 December 2020. Two winter cases with relatively large signals are shown in Fig. <xref ref-type="fig" rid="Ch1.F4"/>a. Considering the non-linearity between the chemical tendency and <inline-formula><mml:math id="M384" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration, sounding-specific uncertainties for all six cases are presented against modeled <inline-formula><mml:math id="M385" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in Fig. <xref ref-type="fig" rid="Ch1.F4"/>b. When conducting those perturbations, other model parameters like the meteorological field and emissions remain unchanged.</p>
      <p id="d1e5669">As a result, the average percent error in <inline-formula><mml:math id="M386" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> or <inline-formula><mml:math id="M387" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> wind speed in the PBL is roughly 22 % for the New Madrid case (Fig. S3a in the Supplement), which contributes to 50 % uncertainty in <inline-formula><mml:math id="M388" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at the sounding level (third column in Fig. <xref ref-type="fig" rid="Ch1.F4"/>a). Higher transport errors may occur more frequently if an intensive point source is in the area or over pixels on the border of the <inline-formula><mml:math id="M389" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes, with moderate signals of about 0.2 to 0.5 <inline-formula><mml:math id="M390" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> (e.g., dots in Fig. <xref ref-type="fig" rid="Ch1.F4"/>b). This is because a small deviation in the modeled wind vectors causes air parcels to either hit or miss the intensive source. The transport uncertainty appears to first correlate positively with the signals and then decreases when signals are sufficiently high, e.g., <inline-formula><mml:math id="M391" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.7 <inline-formula><mml:math id="M392" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. Such a decline may be associated with hyper-near-field soundings, where the deviation in wind fields may not alter modeled signals, as modeled air parcels will always experience a large influence from the emission source (dotted–dashed lines in Fig. <xref ref-type="fig" rid="Ch1.F4"/>b). Compared to power plants, cities may be associated with a more homogeneous transport uncertainty if emissions are more homogeneous and better mixed in the PBL.</p>
      <p id="d1e5738">Given a roughly 40 % uncertainty in the <inline-formula><mml:math id="M393" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels or <inline-formula><mml:math id="M394" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency, chemical uncertainties (in ppb) remain small when modeled signals are compared (Fig. <xref ref-type="fig" rid="Ch1.F4"/>a). Uncertainties from chemical tendency first increase with <inline-formula><mml:math id="M395" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signals and gradually plateau for <inline-formula><mml:math id="M396" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> beyond 0.7 <inline-formula><mml:math id="M397" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, likely because <inline-formula><mml:math id="M398" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is lost slowly when the <inline-formula><mml:math id="M399" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration stays high, and further perturbations in the chemical tendency are less impactful. In contrast, the uncertainty from <inline-formula><mml:math id="M400" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels appears to consistently scale against the signals, i.e., more apparent for soundings adjacent to the power plant, with reasons explained as follows. When the certain perturbed <inline-formula><mml:math id="M401" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level approaches zero, the amount of <inline-formula><mml:math id="M402" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> that can be oxidized as <inline-formula><mml:math id="M403" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> becomes minimal (second column in Fig. <xref ref-type="fig" rid="Ch1.F4"/>a). This case mimics the scenario where <inline-formula><mml:math id="M404" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> can be titrated in proximity to an intense release of <inline-formula><mml:math id="M405" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> before the ozone-depleted plume air is mixed with the ambient ozone-rich air. Nevertheless, considering the entire sample, the percent of errors due to chemical parameters remains relatively low (13 % to 18 % for six cases in Fig. <xref ref-type="fig" rid="Ch1.F4"/>b).</p>
      <p id="d1e5883">Whether chemical or meteorological errors dominate the total model errors fundamentally depends on tropospheric <inline-formula><mml:math id="M406" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signals which further rely on factors like atmospheric stability with wind errors, chemical tendency, and emission distribution. Such a dependence leads to a spatial gradient and seasonal variations in estimated errors, as seen from the above examples. In brief, our limited perturbation experiments suggest that transport uncertainties dominate the total modeled uncertainties, except for a few hyper-near-field soundings, where chemical uncertainties become more substantial.</p>
      <p id="d1e5897">For future emission optimizations, uncertainties in the emissions, retrieval, and background should also be included. Despite the significant advance in the TROPOMI <inline-formula><mml:math id="M407" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval version of v2 compared to v1 <xref ref-type="bibr" rid="bib1.bibx77" id="paren.62"/>, v2 retrieval is associated with a fractional uncertainty (normalized over retrieved <inline-formula><mml:math id="M408" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) of <inline-formula><mml:math id="M409" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 % to 50 % for most soundings within the plume. Uncertainties in the <inline-formula><mml:math id="M410" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions between inventories can serve as the prior uncertainty, which is substantial at the pixel level (Figs. S4 and S5 in the Supplement). Besides the regional wind assessment, a novel plume rotation algorithm based on model–data <inline-formula><mml:math id="M411" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes is proposed in Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/> to quantify near-field wind biases.</p>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Model–data evaluations and comparisons</title>
      <p id="d1e5965">The tropospheric <inline-formula><mml:math id="M412" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio at a given sounding location is influenced by the regional inflow, atmospheric advection and turbulence mixing, underlying emission characteristics, and chemical changes en route to the sounding (Fig. <xref ref-type="fig" rid="Ch1.F2"/>). Modeled tropospheric <inline-formula><mml:math id="M413" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratios using a variety of model configurations are compared against retrieved values from TROPOMI. Such model–data comparisons help evaluate the overall model performance and the roles of individual physical and chemical processes with a naming convention of <inline-formula><mml:math id="M414" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">MET</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>_<inline-formula><mml:math id="M415" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">EMISS</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>_<inline-formula><mml:math id="M416" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">GAS</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>_<inline-formula><mml:math id="M417" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">PROC</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, which is explained as follows: <list list-type="bullet"><list-item>
      <p id="d1e6043"><inline-formula><mml:math id="M418" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">MET</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> represent the meteorological fields of either 0.25<inline-formula><mml:math id="M419" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> GFS or 3 <inline-formula><mml:math id="M420" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> HRRR that are used to drive STILT air parcels.</p></list-item><list-item>
      <p id="d1e6075"><inline-formula><mml:math id="M421" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">EMISS</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> represent two prior <inline-formula><mml:math id="M422" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission inventories. EDGARv6.1 is presented with monthly mean emissions, and the latest year available (2018) is the primary one for simulating all cases. Hourly mean emissions from EPA reports are only used to evaluate modeled chemistry and meteorology for several US power plants (Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/>).</p></list-item><list-item>
      <?pagebreak page6170?><p id="d1e6103"><inline-formula><mml:math id="M423" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">GAS</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> represent the simulated species, with a default string of TNO2 without subtracting a localized  <inline-formula><mml:math id="M424" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> background. A separate comparison with the background subtracted is shown in multi-track comparisons (Fig. <xref ref-type="fig" rid="Ch1.F6"/>; Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/>).</p></list-item><list-item>
      <p id="d1e6133"><inline-formula><mml:math id="M425" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">PROC</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> denotes the physical and chemical processes considered per run. Two main configurations include (1) DEF runs, with both inter-parcel mixing and chemical parameterization included, and (2) NOCHEM runs, with mixing but without considering the   <inline-formula><mml:math id="M426" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency. The NOCHEM runs do account for the <inline-formula><mml:math id="M427" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M428" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> conversion but as a constant   ratio of 0.74, according to EMG-based studies.</p></list-item></list></p>
      <p id="d1e6180">Only model–data comparisons using TROPOMI v2 are shown. As the satellite averaging kernel (AK) and observed <inline-formula><mml:math id="M429" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> differ substantially between v1 and v2, modeled concentrations are weighted by the version-specific AKs to yield apples-to-apples comparisons. Changes in AKs and the retrieved and modeled values between versions are summarized in Fig. S6 in the Supplement.</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Model validation: US power plants</title>
      <p id="d1e6201">The New Madrid power plant along the Mississippi River is a 1300 <inline-formula><mml:math id="M430" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MW</mml:mi></mml:mrow></mml:math></inline-formula> coal-fired power station (GEM, 2021), which ranks first in 2020 among the US power plants regarding <inline-formula><mml:math id="M431" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions provided by EPA. The Thomas Hill and Martin Lake power plants ranked second and third in 2020, respectively. We also report results for an overpass over the Intermountain power plant in Utah, where the surrounding complex terrain is difficult to model properly. Let us start with two examples to illustrate plumes modeled by different model configurations (Sect. <xref ref-type="sec" rid="Ch1.S4.SS1.SSS1"/>) and then present model–data comparisons over dozens of overpasses of the three power plants (Sect. <xref ref-type="sec" rid="Ch1.S4.SS1.SSS2"/>).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e6229">Maps <bold>(a)</bold> and scatterplots <bold>(b)</bold> of the modeled plumes, based on several model configurations (first five columns) versus retrieved plumes and uncertainties from TROPOMI v2.3 (last two columns) for the New Madrid power plant on 15 June 2020 and Intermountain, a Utah power plant, on 14 February 2020. Varied model configurations are labeled at the top of each panel, following the naming convention of <inline-formula><mml:math id="M432" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">MET</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>_<inline-formula><mml:math id="M433" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">EMISS</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>_<inline-formula><mml:math id="M434" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">GAS</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>_<inline-formula><mml:math id="M435" display="inline"><mml:mrow class="chem"><mml:mo>〈</mml:mo><mml:mi mathvariant="normal">PROC</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, as explained in the list of Sect. <xref ref-type="sec" rid="Ch1.S4"/>. In particular, _DEF and _NOCHEM denote the modeled columns using the default (with mixing and chemistry) and non-chemistry configurations. Grid cells with intensive <inline-formula><mml:math id="M436" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> emissions from EDGARv6 are labeled as white circles, with the sizes denoting the relative emission magnitude. The type-II linear regression slope is fitted for each configuration (dotted–dashed line), and modeled and retrieval uncertainties are added (dashed error bars). The underlying road maps were created using the ggmap library in R (map data © 2023).</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f05.png"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e6305">A summary figure of the linear slope between the observed <inline-formula><mml:math id="M437" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and simulated <inline-formula><mml:math id="M438" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, using a variety of model configurations over all three US power plants. Model configurations include simulations (1) with or without <inline-formula><mml:math id="M439" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry parameterization (empty vs. solid dots); (2) using default EDGAR or scaled emissions from EPA (green vs. orange dots); (3) using 0.25<inline-formula><mml:math id="M440" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> GFS or 3 <inline-formula><mml:math id="M441" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> HRRR (dark green or orange vs. light green or orange dots); and (4) using total <inline-formula><mml:math id="M442" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or background-removed local enhancements (e.g., CHEM-FF as crosses). Annual mean slopes are displayed as horizontal solid or dashed lines. The model evaluation here uses TROPOMI v2.3 and emissions from EDGARv6.1. Evaluations that are based on TROPOMI v1.3 and annual mean EDGARv5 emissions are shown in Fig. S13a in the Supplement.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f06.png"/>

        </fig>

<sec id="Ch1.S4.SS1.SSS1">
  <label>4.1.1</label><title>Single-track demonstration</title>
      <p id="d1e6384">The correction in <inline-formula><mml:math id="M443" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions greatly improves the model–data alignment. For example, EDGAR-based simulations substantially underestimate or overestimate the tropospheric columns (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a1 and c1), as EDGAR emissions are almost one-third or twice of the reported hourly EPA emissions for the New Madrid or Intermountain power plants, respectively (Fig. S7 in the Supplement). EPA-based simulations align better with retrieved values from TROPOMI v2, despite deviations over the far-field region (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a2 vs. Fig. <xref ref-type="fig" rid="Ch1.F5"/>a6). Such improvements in the model–data alignment are also inferred from the linear regression slopes reported in Fig. <xref ref-type="fig" rid="Ch1.F5"/>b and d. Not accounting for  <inline-formula><mml:math id="M444" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry or lifetime elevates <inline-formula><mml:math id="M445" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations both within the plume and over the background, even if EPA emissions are assumed to be correct (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a3 and a5). The inter-parcel mixing with a 3 <inline-formula><mml:math id="M446" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> mixing timescale redistributes the <inline-formula><mml:math id="M447" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations among adjacent air parcels but leads to a minimal impact of <inline-formula><mml:math id="M448" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 5 % of the modeled <inline-formula><mml:math id="M449" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at individual column receptors (thereby not shown).</p>
      <?pagebreak page6172?><p id="d1e6469">The choice of meteorological fields with different spatial resolutions insignificantly affects the modeled signals, except for cases surrounded by complex topography and flows. For example, the HRRR-based plumes resemble the GFS-based plumes for the New Madrid power plant (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a2 vs. Fig. <xref ref-type="fig" rid="Ch1.F5"/>a4), which is also revealed by their similar wind error statistics (Fig. S3a). However, the complex terrain and stable PBL during wintertime complicate and usually worsen the model performance as a result of increased meteorological errors. On 14 February 2020, EPA-based plumes over the Intermountain power plant in Utah using two meteorological fields differ substantially from each other, and they both deviate from the observed plume regarding the plume shape. GFS delineates the mean wind direction within its coarser 0.25<inline-formula><mml:math id="M450" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid box, while 3 <inline-formula><mml:math id="M451" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> HRRR offers more spatial variability in wind directions (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c2 vs. Fig. <xref ref-type="fig" rid="Ch1.F5"/>c4). Yet, precisely capturing the curvature in the wind vector is extremely challenging, even when using 3 <inline-formula><mml:math id="M452" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> meteorological fields (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c6) and is more difficult when using Gaussian plume approaches that rely on only one effective wind vector. Such a model–data mismatch in plume shapes can further help to quantify the wind biases, which are discussed in Sect. <xref ref-type="sec" rid="Ch1.S5.SS2.SSS1"/>.</p>
      <p id="d1e6510">Besides modeling challenges, the retrieval uncertainty cannot be neglected, as it ranges from 22 % to 31 % of the retrieved signal for the New Madrid case (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a7) and up to 100 % for the Intermountain case (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c7) at the sounding level. When using retrieved data and the averaging kernel from TROPOMI v1, the regression slope becomes 1.18 and 1.25 (Fig. S8 in the Supplement), indicating that modeled plumes using both  meteorological fields are larger than observed plumes. While using TROPOMI v2, the respective slopes are 0.88 and 1.2 (Fig. <xref ref-type="fig" rid="Ch1.F5"/>b and d). This again emphasizes the substantial uncertainty in the retrieved signals, which is large enough to even alter the conclusion of whether emissions are underestimated or overestimated for a single overpass, and the need for analyzing multiple overpasses for evaluations (Sect. <xref ref-type="sec" rid="Ch1.S4.SS1.SSS2"/>).</p>
</sec>
<sec id="Ch1.S4.SS1.SSS2">
  <label>4.1.2</label><title>Multi-track evaluation</title>
      <p id="d1e6529">To provide a broad impression of the model performance, we expand the model–data comparisons to a total of 50 TROPOMI overpasses across all seasons in 2020, including 34 overpasses for the New Madrid power plant and 9 and 7 summertime overpasses for the Thomas Hill and Martin Lake power plants, respectively. These overpasses are selected based on their relatively intense signals compared to the surroundings. Model–data comparisons for all overpasses are shown in the maps in Figs. S9–S12 in the Supplement, with the linear regression slopes reported and summarized in Fig. <xref ref-type="fig" rid="Ch1.F6"/> and Table S1 in the Supplement.</p>
      <p id="d1e6534">Cases with slopes deviating significantly from 1 are usually associated with substantial near-field wind directional biases. For instance, modeled wind vectors on 11 March, 28 April, and 9 September 2020 have directional biases of <inline-formula><mml:math id="M453" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 30<inline-formula><mml:math id="M454" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (Figs. S9b and S10b), which explain the respective abnormal linear regression slopes of <inline-formula><mml:math id="M455" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.75, 0.49, and 3.2 (Fig. <xref ref-type="fig" rid="Ch1.F6"/>). EDGAR-based simulations are biased too high or too low by a factor of 2 or more when compared to observed values from TROPOMI v2.3 (green dots in Fig. <xref ref-type="fig" rid="Ch1.F6"/>) that are driven by the biases in the EDGAR emissions (Fig. S7). The NOCHEM simulations without  accounting for <inline-formula><mml:math id="M456" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> losses overestimate <inline-formula><mml:math id="M457" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> by a factor of 2 across all seasons and three power plants, regardless of the meteorological or emission fields adopted (empty circles in Fig. <xref ref-type="fig" rid="Ch1.F6"/>). Upgrading meteorological fields to a higher resolution seems to contribute less to the improvement of model–data agreements than correcting the emissions or chemistry. In the end, modeled values with <inline-formula><mml:math id="M458" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry and correct EPA emissions using either GFS or HRRR yield the best agreement with retrieved values from TROPOMI v2 (orange dots and lines in Fig. <xref ref-type="fig" rid="Ch1.F6"/>). When aggregating the results of all overpasses, simulations using the best knowledge of the emissions, the simplified chemistry, two different meteorological fields, and inter-parcel mixing are biased slightly high (regression slope up to 1.2; Table S1). RMSE values between the observed and modeled <inline-formula><mml:math id="M459" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M460" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry-enabled range from 0.11 to 0.15 <inline-formula><mml:math id="M461" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> (Table S1), which is comparable to the random uncertainty in the <inline-formula><mml:math id="M462" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval of 0.09 <inline-formula><mml:math id="M463" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e6652">The statistics discussed above compared the total tropospheric <inline-formula><mml:math id="M464" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns from the model and TROPOMI for soundings around each power plant. It is noticeable that modeled <inline-formula><mml:math id="M465" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> uncontaminated by emissions (i.e., background <inline-formula><mml:math id="M466" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are sometimes slightly lower than observed background <inline-formula><mml:math id="M467" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Figs. S9a and S10a), possibly because higher chemical uncertainties are related to low-<inline-formula><mml:math id="M468" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> regimes, and non-anthropogenic <inline-formula><mml:math id="M469" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources from soil and lightning are excluded from current simulations but can play a significant role on <inline-formula><mml:math id="M470" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> over rural regions <xref ref-type="bibr" rid="bib1.bibx15 bib1.bibx65" id="paren.63"/>. In particular, column contributions from lightning <inline-formula><mml:math id="M471" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions aloft may be amplified, since the TROPOMI <inline-formula><mml:math id="M472" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval has a higher sensitivity towards the free troposphere than PBL. Since our current model setup only accounts for anthropogenic <inline-formula><mml:math id="M473" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources below 2 <inline-formula><mml:math id="M474" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, we conducted an additional test by subtracting the background <inline-formula><mml:math id="M475" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from total <inline-formula><mml:math id="M476" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to arrive at observed anthropogenic enhancements (the second paragraph in Sect. <xref ref-type="sec" rid="Ch1.S2"/>), assuming that the soundings within or outside the plumes have equal contributions from the nearby non-anthropogenic <inline-formula><mml:math id="M477" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources. After subtracting the <inline-formula><mml:math id="M478" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> background, the model–data comparison based on observed <inline-formula><mml:math id="M479" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancements does not change dramatically (e.g., orange crosses vs. orange solid dots in Fig. <xref ref-type="fig" rid="Ch1.F6"/>).</p>
      <p id="d1e6838">In summary, using more accurate <inline-formula><mml:math id="M480" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions with chemistry considerably improves the model–data comparison. Increasing the spatial resolution of meteorological fields has less impact on cases with relatively flat terrain. Larger model–data mismatches generally are associated with larger wind directional biases. Modeled values in <inline-formula><mml:math id="M481" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> may be biased to be slightly low in summer months from April to June and high in winter months from November to February, with minimal annual biases, assuming that the EPA emissions and observed <inline-formula><mml:math id="M482" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are unbiased.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e6877">An example of GFS-based <inline-formula><mml:math id="M483" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes over Baotou (China) on 3 October 2020 <bold>(a)</bold> and the HRRR-based <inline-formula><mml:math id="M484" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes over Phoenix (USA) on 23 December 2020 <bold>(b)</bold>. Modeled plumes are generated using annual mean <inline-formula><mml:math id="M485" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ENO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from EDGAR, with the top emitters highlighted in light-gray circles. Both observed <inline-formula><mml:math id="M486" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and the anthropogenic <inline-formula><mml:math id="M487" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">XCO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancements from OCO-3 are plotted. <inline-formula><mml:math id="M488" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">XCO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancements calculated from a local background have been averaged based on the TROPOMI sounding size. Overpass time differences between TROPOMI and OCO-3 for the two cases are <inline-formula><mml:math id="M489" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M490" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>. TROPOMI observations are cropped to match the boundary of the available OCO-3 soundings. The underlying road maps over Baotou and Phoenix were created using the ggmap library in R (map data © 2023).</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f07.png"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Model application: two cities</title>
      <?pagebreak page6173?><p id="d1e6983">We now move to city cases that include an industrial Chinese city, Baotou, and one of the fastest growing megacities in the US, Phoenix. As <inline-formula><mml:math id="M491" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M492" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are commonly co-emitted into the atmosphere, observed <inline-formula><mml:math id="M493" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">XCO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancements derived from the Orbiting Carbon Observatory 3 (OCO-3) Snapshot Area Mapping (SAM) mode are displayed with observed <inline-formula><mml:math id="M494" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F7"/>). Background <inline-formula><mml:math id="M495" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">XCO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is defined as the mean values over the background region that is determined by <inline-formula><mml:math id="M496" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes <xref ref-type="bibr" rid="bib1.bibx84" id="paren.64"><named-content content-type="pre">modified from the background approach in</named-content></xref>. Both cities possess relatively richer OCO-3 SAM observations co-located with TROPOMI data. Since no true <inline-formula><mml:math id="M497" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are available for cities, EDGAR is utilized as the prior emission inventory for simulating <inline-formula><mml:math id="M498" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and optimizing <inline-formula><mml:math id="M499" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions.</p>
      <p id="d1e7093">We simulated 18 and 12 TROPOMI overpasses, respectively, for Baotou and Phoenix (Figs. S14 and S15 in the Supplement) and first presented one example per city in Fig. <xref ref-type="fig" rid="Ch1.F7"/>. Baotou is surrounded by four point sources, as suggested by EDGARv6, but one large source in the city center, as informed by both the observed <inline-formula><mml:math id="M500" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M501" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">XCO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancements on 3 October 2020 (Fig. <xref ref-type="fig" rid="Ch1.F7"/>a). Such a mismatch is confirmed by the comparison of normalized <inline-formula><mml:math id="M502" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> across all 18 TROPOMI overpasses with various wind speeds and directions (Fig. S14b), suggesting that EDGAR very likely misallocated anthropogenic <inline-formula><mml:math id="M503" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources. Similarly, the largest emission source to the east of the city center of Phoenix, according to EDGAR, seems suspicious and may again be misplaced when more overpasses are simulated (Fig. S15b). The observed plume is concentrated near the city center, compared to the HRRR-derived plume that dispersed farther away from the city center on 23 December 2020 (Fig. <xref ref-type="fig" rid="Ch1.F7"/>b). Such a spatial offset of the <inline-formula><mml:math id="M504" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes is likely due to an overestimation in the modeled wind speed,<?pagebreak page6174?> which pushes the plumes to the southern edge while diluting <inline-formula><mml:math id="M505" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values over the urban core.</p>
      <p id="d1e7169">When more overpasses are examined, the model captures the seasonal variation in <inline-formula><mml:math id="M506" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> well (i.e., higher or lower values in winter or summer months; Figs. S14a and S15a). Other than emission biases that affect all cases, a few overpasses stand out for Baotou, with poorer agreements with TROPOMI likely owing to (1) clear biases in wind direction on 31 May, 9 August, 15 December 2020, and 19 February 2021; (2) a likely overestimation in STILT footprint that may trigger several effects on 29 September, 29 March 2020, and 16 October 2021 (Fig. S14a). Although STILT can characterize the sub-grid-cell turbulent mixing by its stochastic nature, the 0.25<inline-formula><mml:math id="M507" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> GFS may be insufficient to resolve the complex terrain and air flows, contributing to biases in wind directions and planetary boundary layer heights (PBLHs) over mountainous locations <xref ref-type="bibr" rid="bib1.bibx41" id="paren.65"/> such as over Baotou. Deviations in the PBLH may cause a cascade of effects, such as deciding up to what height the emissions are diluted, whether such height is above or below the emission or plume height, and chemical changes along the way. Such effects may be magnified under low-mixing and low-wind conditions where the model particularly struggles with the accuracy of PBLH. Without much mixing between the plume and background air, the prescribed available <inline-formula><mml:math id="M508" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level may be overestimated adjacent to intensive <inline-formula><mml:math id="M509" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources. Overestimation in the <inline-formula><mml:math id="M510" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration may further be amplified when considering the dependence of <inline-formula><mml:math id="M511" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rate changes on its concentration. Hence, concentrations of chemically reactive species under low-mixing scenarios are extremely challenging to model properly with an extreme during the nighttime.</p>
</sec>
</sec>
<sec id="Ch1.S5">
  <label>5</label><title>Discussion</title>
      <p id="d1e7250">Our ultimate goal is to explore what can be learned about the emission characteristics from anthropogenic hotspots with the joint use of space-based <inline-formula><mml:math id="M512" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M513" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M514" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes. As an intermediate step, this study is informed by previous efforts to extract and constrain urban <inline-formula><mml:math id="M515" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions from satellites using a Lagrangian framework <xref ref-type="bibr" rid="bib1.bibx84 bib1.bibx64" id="paren.66"/> and extends it to the interpretation of tropospheric <inline-formula><mml:math id="M516" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> satellite data. To diagnose <inline-formula><mml:math id="M517" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions from <inline-formula><mml:math id="M518" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column signals, we need to effectively account for how <inline-formula><mml:math id="M519" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> evolves in air parcels from its initial source to locations sampled by TROPOMI, making the Lagrangian perspective an ideal candidate. Now we discuss when and how such a framework can be of most use and also the possible future improvements.</p>
<sec id="Ch1.S5.SS1">
  <label>5.1</label><title>Model advantages and flexibility</title>
      <p id="d1e7349">Our framework accounts for atmospheric transport and chemical transformation in a more rigorous way than typical statistical approaches such as the EMG method and in a more efficient way than full-chemistry models that explicitly resolve individual chemical reactions.</p>
      <p id="d1e7352">Another advantage of the STILT–<inline-formula><mml:math id="M520" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> design is that each of the three main components (trajectory calculations representing air transport, chemical production or loss of the target species, and optimization of emission) are independent and each can reuse the previously saved output from the others. For example, if one wanted to test how sensitive model concentrations were to the chosen chemical scheme, then the simulations of atmospheric transport can be reused via the storage of trajectory-based modeling, thereby reducing the computational cost. Our prototype demonstrates a global solution of the <inline-formula><mml:math id="M521" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency parameterized by the one set of <inline-formula><mml:math id="M522" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves in Fig. <xref ref-type="fig" rid="Ch1.F3"/>. Although this simplification may be thought of as a limitation, one can easily replace those default curves with alternatives that are tailored toward a specific region or regime of interest. Such flexibility can inform us of the influence on modeled columns from <inline-formula><mml:math id="M523" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves derived from different chemical mechanisms. Similarly, one can investigate the sole meteorological influence by diversifying the meteorological and mixing parameters. Moreover, because air parcels in LPDMs are not tied to a certain atmospheric tracer, we can estimate the concentrations of various species along model trajectories. It allows us to constrain emissions for multiple atmospheric constituents in a consistent framework, which may shed light on tracer–tracer analyses (Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/>).</p>
      <p id="d1e7404">The Lagrangian modeling approach has its inherent benefits. First, the generation and recording of trajectories can easily reveal the source regions that are only relevant to a specific satellite sounding and the sub-city-scale variations in emission characteristics <xref ref-type="bibr" rid="bib1.bibx85" id="paren.67"/>. In addition to storing latitudinal and longitudinal coordinates and extrapolated meteorological quantities along every trajectory at each timestamp, STILT–<inline-formula><mml:math id="M524" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> outputs and records <inline-formula><mml:math id="M525" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration changes due to every process, including emission, net chemical changes, and inter-parcel mixing at minute scales. Those trajectory-level concentration changes are further driven by several model configurations listed in Sect. <xref ref-type="sec" rid="Ch1.S4"/>, which facilitates model debugging and comprehends modeled results. See Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/> for one of the applications. Second, the spatial resolution of concentration calculations is not bounded by the rigid boundary of model grid cells, which is particularly important for dealing with non-linear processes for chemically active species. As demonstrated in several studies <xref ref-type="bibr" rid="bib1.bibx75" id="paren.68"><named-content content-type="pre">e.g.,</named-content></xref>, the grid-averaged concentration may undergo excessive mixing in Eulerian models, and the concentration-driven chemical tendency varies with the adopted spatial resolution. While the Lagrangian perspective solves for concentration changes at extremely high spatiotemporal resolutions, inter-parcel mixing schemes can be implemented to smooth the concentration gradients, whereas it may be challenging to recover the sub-grid-cell concentration gradients in the Eulerian framework unless also increasing the spatial resolution.</p>
      <?pagebreak page6175?><p id="d1e7442">More broadly, the proposed simplified parameterization of the non-linear <inline-formula><mml:math id="M526" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> tendency or <inline-formula><mml:math id="M527" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves is not limited to the STILT framework and can potentially be incorporated into other Lagrangian modeling frameworks or even Eulerian frameworks with a fine spatial resolution to resolve the local variability in chemistry.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e7470"><bold>(a)</bold> An example of the normalized spatial mean of the sounding-wise product (<inline-formula><mml:math id="M528" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">ppb</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">ppb</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) between an unrotated observed <inline-formula><mml:math id="M529" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and a rotated plume for the New Madrid power plant on 15 June 2020. Gaussian-like curves are fitted to each set, with the mean and standard deviation indicating modeled wind biases. Five sets of rotated plumes include observed <inline-formula><mml:math id="M530" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (purple) and simulated <inline-formula><mml:math id="M531" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> driven by GFS (dark green) or HRRR (dark orange), with or without the account of the <inline-formula><mml:math id="M532" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime (light green or light orange). The horizontal dashed lines denote the <inline-formula><mml:math id="M533" display="inline"><mml:mi mathvariant="italic">μ</mml:mi></mml:math></inline-formula> parameter that can translate into wind bias in degrees or radians. <bold>(b)</bold> Near-field wind directional bias quantified by the modeled <inline-formula><mml:math id="M534" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes, using 3 <inline-formula><mml:math id="M535" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> HRRR (orange bars) or 0.25<inline-formula><mml:math id="M536" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> GFS (green bars), and retrieved <inline-formula><mml:math id="M537" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes for every examined TROPOMI overpass (<inline-formula><mml:math id="M538" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis; in degrees), following the rotation algorithm in panel <bold>(a)</bold>.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f08.png"/>

        </fig>

</sec>
<sec id="Ch1.S5.SS2">
  <label>5.2</label><?xmltex \opttitle{Implications for constraining urban {$\protect\chem{CO_{{2}}}$} emission and emission ratios}?><title>Implications for constraining urban <inline-formula><mml:math id="M539" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission and emission ratios</title>
      <p id="d1e7626">The knowledge learned from analyzing <inline-formula><mml:math id="M540" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes can be transferrable to constraining bottom-up <inline-formula><mml:math id="M541" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions. Two main sources of biases influencing the urban <inline-formula><mml:math id="M542" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission constraint include biases in wind direction and emission locations. Model–data mismatches in <inline-formula><mml:math id="M543" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns have shown great value in easily identifying the biases with emission locations, even without deploying atmospheric inverse analyses (Sect. <xref ref-type="sec" rid="Ch1.S4.SS2"/>), especially for point sources in urban areas, when plumes from multiple sources overlap less with one another. Additionally, diagnosing the <inline-formula><mml:math id="M544" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions can facilitate <inline-formula><mml:math id="M545" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission estimates in two ways. It can reveal systematic biases in near-field wind directions (Sect. <xref ref-type="sec" rid="Ch1.S5.SS2.SSS1"/>) and quantify the <inline-formula><mml:math id="M546" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M547" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission ratios for point and/or area sources to assist in sector-based attribution (Sect. <xref ref-type="sec" rid="Ch1.S5.SS2.SSS2"/>).</p>
<sec id="Ch1.S5.SS2.SSS1">
  <label>5.2.1</label><title>Quantifying wind bias</title>
      <p id="d1e7731">In addition to leveraging limited radiosonde measurements, the obtained modeled and retrieved <inline-formula><mml:math id="M548" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes can be used to quantify wind biases to improve the accuracy of top-down <inline-formula><mml:math id="M549" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission constraints, whether or not conventional atmospheric inversions are employed. To do so, we conducted a second wind assessment involving a plume rotation algorithm. In brief, a <inline-formula><mml:math id="M550" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plume from either model or retrieval is rotated clockwise (<inline-formula><mml:math id="M551" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> from <inline-formula><mml:math id="M552" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>180 to <inline-formula><mml:math id="M553" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5<inline-formula><mml:math id="M554" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, with a spacing of 5<inline-formula><mml:math id="M555" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) or counter-clockwise (from 5 to 180<inline-formula><mml:math id="M556" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) around the emission source and then resampled onto the original TROPOMI pixels (Fig. S16 in the Supplement). <inline-formula><mml:math id="M557" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from an original and a rotated plume are multiplied to arrive at a cross-product of <inline-formula><mml:math id="M558" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (in <inline-formula><mml:math id="M559" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">ppb</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>), which is analogous to the concept of cross-correlation. The original or rotated plume can be chosen from either the model or observations, and their normalized cross-product can be expressed as a function of rotating angles (colors in Fig. <xref ref-type="fig" rid="Ch1.F8"/>a). More details on intermediate steps to calculate such a function are described in Appendix <xref ref-type="sec" rid="App1.Ch1.S3"/>.</p>
      <p id="d1e7854">As a result, the width of the Gaussian-shaped curve of the cross-product (as measured by the <inline-formula><mml:math id="M560" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> parameter of a Gaussian fit) reflects the bias in the plume shape resulting from horizontal dispersion. A larger area under the Gaussian curve indicates a greater overlap between the initial plume and the rotated plume. More importantly, deviations in the central line of the Gaussian fit away from zero (as measured by the <inline-formula><mml:math id="M561" display="inline"><mml:mi mathvariant="italic">μ</mml:mi></mml:math></inline-formula> parameter) imply possible biases in the near-field wind direction for each TROPOMI overpass (Fig. <xref ref-type="fig" rid="Ch1.F8"/>b). Specifically, wind directional biases of both GFS and HRRR appear to be smaller from May to early September than in the remaining months (Fig. <xref ref-type="fig" rid="Ch1.F8"/>b). A few outliers stand out due to large wind biases on 11 March, 28 April, 20 September, 5 October, 16 October, and 16 November 2020.</p>
      <p id="d1e7875">By identifying those outliers with strong wind directional biases, one can consider either removing those cases or assigning a larger observational uncertainty when attempting to constrain emissions of <inline-formula><mml:math id="M562" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M563" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M564" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, assuming that their emissions are mostly co-located. Alternatively, we can use this rotating algorithm to create a model plume with minimized wind directional bias before being fed into atmospheric inversions or data assimilation systems (which usually deal with random uncertainties). A more sophisticated approach would be to optimize the emission and wind field simultaneously <xref ref-type="bibr" rid="bib1.bibx44" id="paren.69"/>. More investigations may be needed to examine the degree of freedom of such a wind-emission optimization framework.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e7914">A quantitative metric of the impact from <inline-formula><mml:math id="M565" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry on tropospheric <inline-formula><mml:math id="M566" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M567" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns. Ratios in <inline-formula><mml:math id="M568" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> between simulations with and without chemistry are calculated as <inline-formula><mml:math id="M569" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts,s</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">CHEM</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>/</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">NOCHEM</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>, which is displayed as a histogram <bold>(a)</bold> and as a function of the distance of the satellite sounding from the site center <bold>(b)</bold>. Soundings in summertime overpasses are colored in dark green, whereas brown is used for soundings in the dormant months. Soundings of all overpasses for all city and power plant cases are included in histograms. Only downwind soundings in the <inline-formula><mml:math id="M570" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes are included in the distance panel <bold>(b)</bold>, with a smooth spline fitted per overpass to reveal the anti-correlation. The ratio between the modeled tropospheric <inline-formula><mml:math id="M571" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> column versus the tropospheric <inline-formula><mml:math id="M572" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column is derived from each sounding to reveal the <inline-formula><mml:math id="M573" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M574" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio influence <bold>(c)</bold>. As a reference, most previous studies adopted a constant <inline-formula><mml:math id="M575" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M576" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratio (reciprocal of <inline-formula><mml:math id="M577" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M578" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio) of 1.32 and can reach 2 in a hyper-near-field area of a major <inline-formula><mml:math id="M579" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f09.png"/>

          </fig>

</sec>
<sec id="Ch1.S5.SS2.SSS2">
  <label>5.2.2</label><?xmltex \opttitle{Quantifying emission ratios between {$\protect\chem{NO_{\mathit{x}}}$} and GHGs}?><title>Quantifying emission ratios between <inline-formula><mml:math id="M580" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and GHGs</title>
      <p id="d1e8157">Our modeling development offers additional insights into the discrepancy between emission ratios at the sources and directly observed enhancement ratios between two species with different chemical lifetimes. The joint use of <inline-formula><mml:math id="M581" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M582" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has enabled the calculation of emission ratios by adopting a spatial constant <inline-formula><mml:math id="M583" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime <xref ref-type="bibr" rid="bib1.bibx46 bib1.bibx18" id="paren.70"/> and the constraint of <inline-formula><mml:math id="M584" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions using <inline-formula><mml:math id="M585" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes by adopting inventory-based emission ratios <xref ref-type="bibr" rid="bib1.bibx89 bib1.bibx88" id="paren.71"/>. However, inventory-based emission ratios might not be well constrained, and the impact of how <inline-formula><mml:math id="M586" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> decays over time and space on observed <inline-formula><mml:math id="M587" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ENO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M588" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ECO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission ratios has not been comprehensively assessed, which may impair the ability to accurately quantify such observed emission ratios <xref ref-type="bibr" rid="bib1.bibx31" id="paren.72"/>.</p>
      <p id="d1e8258">Thanks to the ability of our model to track <inline-formula><mml:math id="M589" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M590" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations along trajectories with different model configurations, we can provide an assessment of the influence of atmospheric chemistry on estimating emission ratios. Specifically, the impact from <inline-formula><mml:math id="M591" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> net losses from each satellite sounding(s) is specified as the ratio of modeled tropospheric <inline-formula><mml:math id="M592" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> with chemistry over that without chemistry in the following: <inline-formula><mml:math id="M593" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts,s</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mtext>CHEM,s</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mtext>NOCHEM,s</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Because <inline-formula><mml:math id="M594" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is simply treated as a passive tracer like <inline-formula><mml:math id="M595" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the NOCHEM simulations, <inline-formula><mml:math id="M596" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are naturally smaller than 1. Lower <inline-formula><mml:math id="M597" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> corresponds to faster <inline-formula><mml:math id="M598" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical frequency and more chemical losses en route to the sounding location, suggesting that <inline-formula><mml:math id="M599" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M600" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancement ratios derived directly from satellites need to be scaled up to render the <inline-formula><mml:math id="M601" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ENO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M602" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ECO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission ratios at source locations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e8445"><bold>(a)</bold> Similar to Fig. <xref ref-type="fig" rid="Ch1.F3"/>b but differentiated by four intervals of <inline-formula><mml:math id="M603" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and SZA bins smaller than 70<inline-formula><mml:math id="M604" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, with a spacing of 10<inline-formula><mml:math id="M605" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. All panels here utilized model results from the same WRF-Chem simulations described in Sect. 2 and Appendix A.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/6161/2023/gmd-16-6161-2023-f10.png"/>

          </fig>

      <p id="d1e8488">We calculated <inline-formula><mml:math id="M606" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for every sounding and present their distribution as histograms in Fig. <xref ref-type="fig" rid="Ch1.F9"/>a or as a function of the distance from the emission source (Fig. <xref ref-type="fig" rid="Ch1.F9"/>b). <inline-formula><mml:math id="M607" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> ranges from 0.24 to 0.61 for three power plants and from 0.42<?pagebreak page6176?> to 0.84 for three cities, where lower values correspond to summer months (green bars in Fig. <xref ref-type="fig" rid="Ch1.F9"/>a). That is to say, the directly observed <inline-formula><mml:math id="M608" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M609" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancement ratios may have to be scaled up by 1.2 to even 4 times across seasons to properly recover the <inline-formula><mml:math id="M610" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> being lost en route from emission sources to the sounding locations. Not properly accounting for such an effect leads to an underestimation of the derived emission ratios from satellites. More importantly, discrepancies between enhancement ratios and emission ratios, reflected by <inline-formula><mml:math id="M611" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, are not spatially uniform. <inline-formula><mml:math id="M612" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> gradually decline as soundings move away from the emission sources (Fig. <xref ref-type="fig" rid="Ch1.F9"/>b). Soundings located farther downwind of emission sources tend to undergo more chemical transformations, likely because <inline-formula><mml:math id="M613" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> losses become more rapid as <inline-formula><mml:math id="M614" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations become lower by atmospheric dispersion (triggering positive feedback). We clarify that only downwind soundings affected by major <inline-formula><mml:math id="M615" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are included in Fig. <xref ref-type="fig" rid="Ch1.F9"/>b, and simulations with or without chemistry have included the effect of atmospheric dispersion as distance increases. Furthermore, how quickly <inline-formula><mml:math id="M616" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> declines with distance depends on the wind speed and heterogeneity in emissions. For example, the faster the wind may be, or the more isolated emissions there are, the steeper <inline-formula><mml:math id="M617" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> decline with distance. <inline-formula><mml:math id="M618" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at the distance of 0 are much lower than 1 in summer, which suggests that the chemical transformation can affect the <inline-formula><mml:math id="M619" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> inflow. We further observe slight differences in the distribution of <inline-formula><mml:math id="M620" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for cities versus power plants. Histograms of both tropospheric <inline-formula><mml:math id="M621" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. S17 in the Supplement) and <inline-formula><mml:math id="M622" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>ts</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> over cities are associated with a wider spread than power plants because cities contain a wider spectrum of emission types and intensities.</p>
      <p id="d1e8691">Last, enhancement ratios need to be adjusted considering the <inline-formula><mml:math id="M623" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M624" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio and differences in averaging kernels among two retrievals. The medians of our estimated <inline-formula><mml:math id="M625" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M626" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratio over power plants and cities range from 1.33 to 1.66, which generally aligns with previous studies of around 1.32 <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx15" id="paren.73"/>. Our estimates are lower in winter than in summer and can be as large as 2 or 3 for a few soundings experiencing intense <inline-formula><mml:math id="M627" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources (Fig. <xref ref-type="fig" rid="Ch1.F9"/>c).</p>
</sec>
</sec>
<sec id="Ch1.S5.SS3">
  <label>5.3</label><title>Limitations and room for improvement</title>
      <p id="d1e8764">The diversity of VOC emissions, the vertical profiles of emissions, and the extent of inter-parcel mixing may impact the modeled results. Perhaps one of the biggest limitations of the current <inline-formula><mml:math id="M628" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical representation lies in not directly accounting for VOCs, which may affect (a) the sweet spot on <inline-formula><mml:math id="M629" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves, where two <inline-formula><mml:math id="M630" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss pathways reach their maximum, and (b) the <inline-formula><mml:math id="M631" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-based <inline-formula><mml:math id="M632" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M633" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratios (Sect. <xref ref-type="sec" rid="Ch1.S5.SS3.SSS1"/>). Moreover, the influence of representations of the emission profile on modeled <inline-formula><mml:math id="M634" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> can be magnified when further when considering the TROPOMI <inline-formula><mml:math id="M635" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> averaging kernel (Sect. <xref ref-type="sec" rid="Ch1.S5.SS3.SSS2"/>). Simulations of point sources like power plants may be more sensitive to these factors compared to simulations of areal sources.</p>
<sec id="Ch1.S5.SS3.SSS1">
  <label>5.3.1</label><?xmltex \opttitle{The impact from {$\protect\chem{VOC_{{R}}}$}}?><title>The impact from <inline-formula><mml:math id="M636" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <?pagebreak page6177?><p id="d1e8878">To investigate the impact of VOCs on <inline-formula><mml:math id="M637" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves, we calculated the VOC reactivity against <inline-formula><mml:math id="M638" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> from existing WRF-Chem results, based on the following formula: <inline-formula><mml:math id="M639" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M640" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M641" display="inline"><mml:mrow><mml:mo>∑</mml:mo><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mi>n</mml:mi></mml:msup><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">VOC</mml:mi></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>[</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">VOC</mml:mi></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> and generated separate sets of <inline-formula><mml:math id="M642" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves for four respective <inline-formula><mml:math id="M643" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> intervals of [0.1, 1), [1, 3), [3, 10), and [10, 50) <inline-formula><mml:math id="M644" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, with a coarse SZA bin spacing of 10<inline-formula><mml:math id="M645" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Curves become much noisier at night and in pristine environments with extremely low <inline-formula><mml:math id="M646" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M647" display="inline"><mml:mo lspace="0mm">≤</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M648" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>), where WRF-Chem and RADM2 may be less suitable (thereby not shown in Fig. <xref ref-type="fig" rid="Ch1.F10"/>).</p>
      <p id="d1e9035">When considering lower SZAs (consistent with the TROPOMI overpass time of 13:00 local time), the general non-linear characteristic of these <inline-formula><mml:math id="M649" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves holds as <inline-formula><mml:math id="M650" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> increases (Fig. <xref ref-type="fig" rid="Ch1.F10"/>). Higher <inline-formula><mml:math id="M651" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> relative to lower <inline-formula><mml:math id="M652" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration favors the oxidation of VOCs by <inline-formula><mml:math id="M653" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> and the associated minor loss pathway of <inline-formula><mml:math id="M654" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M655" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M656" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to form alkyl nitrates with a minor branching ratio over the competing major <inline-formula><mml:math id="M657" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss pathway of <inline-formula><mml:math id="M658" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M659" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M660" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). With rising <inline-formula><mml:math id="M661" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the <inline-formula><mml:math id="M662" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency becomes more positive (P – L;<?pagebreak page6178?> Fig. S18a in the Supplement), and the net loss timescale elongates (e.g., <inline-formula><mml:math id="M663" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">ts</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> from 2 to 4 <inline-formula><mml:math id="M664" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> in Fig. <xref ref-type="fig" rid="Ch1.F10"/>). Moreover, <inline-formula><mml:math id="M665" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is required to reach a higher level to compete with the reactions involving VOCs, evident by the shift in the trough of the <inline-formula><mml:math id="M666" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves (e.g., <inline-formula><mml:math id="M667" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NOx</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> from 1.4 to 3.7 <inline-formula><mml:math id="M668" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> in Fig. <xref ref-type="fig" rid="Ch1.F10"/>). To put it in context, the <inline-formula><mml:math id="M669" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> curves shown in Fig. <xref ref-type="fig" rid="Ch1.F3"/> represent typical patterns, as long as <inline-formula><mml:math id="M670" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> remains below 10 <inline-formula><mml:math id="M671" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e9287"><inline-formula><mml:math id="M672" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> may also affect the <inline-formula><mml:math id="M673" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level and the <inline-formula><mml:math id="M674" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M675" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio. The prescribed <inline-formula><mml:math id="M676" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level of 50 <inline-formula><mml:math id="M677" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> (Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/>) overlooks the non-linear <inline-formula><mml:math id="M678" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> variability related to <inline-formula><mml:math id="M679" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx37" id="paren.74"/>. In <inline-formula><mml:math id="M680" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-limited scenarios, <inline-formula><mml:math id="M681" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> favors the oxidation of VOCs, and local-scale <inline-formula><mml:math id="M682" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is predominately produced by <inline-formula><mml:math id="M683" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M684" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M685" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M686" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, suggesting higher <inline-formula><mml:math id="M687" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels with increased <inline-formula><mml:math id="M688" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations. The omission of <inline-formula><mml:math id="M689" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M690" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M691" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M692" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in Eqs. (3) could lead to an underestimation of the <inline-formula><mml:math id="M693" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M694" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio, which likely explains the modeled <inline-formula><mml:math id="M695" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> being consistently lower than observations over background regions. Conversely, under <inline-formula><mml:math id="M696" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-saturated conditions, the consumption of <inline-formula><mml:math id="M697" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> by <inline-formula><mml:math id="M698" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> may limit the VOC oxidation and <inline-formula><mml:math id="M699" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production, leading to a decline in <inline-formula><mml:math id="M700" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level as the <inline-formula><mml:math id="M701" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration rises. Consequently, the <inline-formula><mml:math id="M702" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M703" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratio might be overestimated when the true <inline-formula><mml:math id="M704" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels fall below 50 <inline-formula><mml:math id="M705" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> (particularly under stagnant atmospheric mixing) or underestimated due to the absence of <inline-formula><mml:math id="M706" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M707" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M708" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reactions. Nevertheless, our predetermined <inline-formula><mml:math id="M709" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level of 50 <inline-formula><mml:math id="M710" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> acts as a first-order limit to prevent unrealistic conversion from <inline-formula><mml:math id="M711" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M712" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at extremely high <inline-formula><mml:math id="M713" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> levels when <inline-formula><mml:math id="M714" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is being titrated.</p>
      <p id="d1e9736">To address these limitations, one potential approach is to leverage formaldehyde concentrations retrieved from TROPOMI. Recent studies revisited the use of the formaldehyde : <inline-formula><mml:math id="M715" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratios (i.e., FNR) from satellites as a means of inferring <inline-formula><mml:math id="M716" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> production rates <xref ref-type="bibr" rid="bib1.bibx15 bib1.bibx67" id="paren.75"/>. Our WRF-Chem simulations, which were used to parameterize the <inline-formula><mml:math id="M717" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical tendency, show that modeled formaldehyde generally increases with <inline-formula><mml:math id="M718" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VOC</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> with varying slopes influenced by SZA and <inline-formula><mml:math id="M719" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations (Fig. S18c), and <inline-formula><mml:math id="M720" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations scale non-linearly with FNRs with <inline-formula><mml:math id="M721" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration, approaching a background value at a high FNR <inline-formula><mml:math id="M722" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 10 (Fig. S18d). Even though satellite-based FNRs may theoretically help probe the <inline-formula><mml:math id="M723" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M724" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration to better parameterize <inline-formula><mml:math id="M725" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M726" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratios, <xref ref-type="bibr" rid="bib1.bibx67" id="text.76"/> stressed that retrieval errors, especially from formaldehyde (40 % to 90 % with <inline-formula><mml:math id="M727" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 50 % over cities) and inherent chemical errors in the predictive power of FNRs, may hinder the broad application of space-based FNRs at the current stage. Nonetheless, sensitivity analyses in Sect. <xref ref-type="sec" rid="Ch1.S3"/> indicate an overall chemical uncertainty in <inline-formula><mml:math id="M728" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> of about 10 % to 20 % with respect to <inline-formula><mml:math id="M729" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signals, even if the perturbed <inline-formula><mml:math id="M730" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> level is much lower than 50 <inline-formula><mml:math id="M731" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F4"/>).</p>
</sec>
<sec id="Ch1.S5.SS3.SSS2">
  <label>5.3.2</label><title>Uncertainties in non-chemical processes</title>
      <p id="d1e9936">Besides the simplification of chemical reactions, modeled <inline-formula><mml:math id="M732" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values can be subject to a few physical processes and parameters, including emission profiles, inter-parcel mixing scales, and dry deposition.</p>
      <p id="d1e9950">The underlying STILT v2 <xref ref-type="bibr" rid="bib1.bibx12" id="paren.77"/> accounted for a gradual growth of the mixed layer height over the hyper-near-field area around emissions. Yet, by convolving the STILT footprint with <inline-formula><mml:math id="M733" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, we assumed that emissions originate from the surface and are uniformly mixed over the mixed layer without considering the possible uneven distribution of emissions from different vertical levels. In reality, under stable atmospheric conditions, the stack heights or plume heights of emission sources can sometimes extend above the shallow PBL. Our current assumption may thus lead to an overestimation in modeled concentrations, and such biases can in turn affect the estimate of the <inline-formula><mml:math id="M734" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> tendency. More importantly, changes in the vertical profile of emissions can lead to changes in concentration per model level, which affect the tropospheric columns, as the typical averaging kernel profile is far from uniform within the PBL. Recall that TROPOMI <inline-formula><mml:math id="M735" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> AKs decrease rapidly towards the surface (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). Hence, placing an emission plume at the surface or an elevated altitude (e.g., 400 <inline-formula><mml:math id="M736" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) can cause a discrepancy in modeled column concentrations. In addition, if the wind shear is strong over an intensive point source (likely the Intermountain example in Fig. <xref ref-type="fig" rid="Ch1.F5"/>c), assumptions about the injection height and vertical profile of emission plumes may affect the modeled plume shape and possibly deviate the estimated near-field wind bias, following Sect. <xref ref-type="sec" rid="Ch1.S5.SS2.SSS1"/>. Noticeably, <xref ref-type="bibr" rid="bib1.bibx47" id="text.78"/> investigated the influence of the inaccurate representation of emission profiles on the flask-like modeled concentrations by implementing a time-varying, sector-specific emission profile into STILT. Such an impact on column concentrations may be minimized but requires future in-depth investigations, particularly over point sources.</p>
      <?pagebreak page6179?><p id="d1e10007">Accounting for inter-parcel mixing was an important aspect when developing Lagrangian chemical models. Omitting inter-parcel mixing makes solving for non-linear processes (such as chemical <inline-formula><mml:math id="M737" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss) problematic. On the contrary, Eulerian models suffer from excessive numerical diffusion. Mixing that is too strong smooths the spatial gradient of concentration and can lower the concentration within the fixed model grids, which may cause slight shifts in the <inline-formula><mml:math id="M738" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> regimes. <xref ref-type="bibr" rid="bib1.bibx75" id="text.79"/> suggested that a spatial resolution of 4 to 12 <inline-formula><mml:math id="M739" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> is sufficient to capture the non-linearity in the <inline-formula><mml:math id="M740" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss rate. As for Lagrangian models, efforts can be made to enable the flux exchange between air parcels via deformations <xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx48" id="paren.80"/>. In addition to the inter-parcel mixing within the mixed layer (ML), several other turbulent mixing processes require future investigation, including (1) horizontal mixing in the free troposphere (FT), (2) vertical mixing between the ML and FT, and (3) mixing between tracked air parcels with the untracked surrounding background. For example, <xref ref-type="bibr" rid="bib1.bibx60" id="text.81"/> utilized a linear relaxation, with an exponential decay of the plume concentrations towards the background based on a timescale of 2 <inline-formula><mml:math id="M741" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> to address the third mixing process. The second mixing process requires future modifications involving the determination of entrainment zones and mixing hyperparameters for such ML–FT exchange.</p>
      <p id="d1e10069">The original STILT model realized vertical mixing by diluting the surface emissions across the ML height <xref ref-type="bibr" rid="bib1.bibx39" id="paren.82"/>, and we further enabled an exchange in pollutants' concentrations with prescribed mixing length scales and timescales representing typical horizontal mixing rates (Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>). As part of the final sensitivity tests, we simulated <inline-formula><mml:math id="M742" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> based on a spectrum of mixing hyperparameters for the New Madrid power plant. Uncertainties in the mixing parameters result in minimal uncertainties in the sounding-specific modeled <inline-formula><mml:math id="M743" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values (Fig. S19 in the Supplement). For example, differences in modeled <inline-formula><mml:math id="M744" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> between the mixing and non-mixing simulations become larger as mixing becomes faster and for receptors or soundings located on the edge of the plume (i.e., only a small fraction of the trajectories encountered power plant emission in Fig. S20 in the Supplement). Uncertainties in the prescribed mixing hyperparameters contribute even less to the modeled values over urban areas (i.e., <inline-formula><mml:math id="M745" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 % for Phoenix cases), where emissions are generally better mixed than at power plants. In addition, such a mixing influence can vary with the spatial resolution of the emission inventory used in the simulations.</p>
      <p id="d1e10119">The dry deposition of <inline-formula><mml:math id="M746" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was not factored into this study, which could lead to an overestimation of modeled <inline-formula><mml:math id="M747" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. For future model implementations, it is possible to track the loss of <inline-formula><mml:math id="M748" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations due to dry deposition by calculating the dry deposition velocities <xref ref-type="bibr" rid="bib1.bibx80" id="paren.83"><named-content content-type="pre">e.g.,</named-content></xref> when air parcels descend close to the surface, e.g., 50 <inline-formula><mml:math id="M749" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> above the surface <xref ref-type="bibr" rid="bib1.bibx79" id="paren.84"/>.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <label>6</label><title>Summary</title>
      <p id="d1e10182">In developing STILT–<inline-formula><mml:math id="M750" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, we aim to quantify anthropogenic <inline-formula><mml:math id="M751" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission signals for power plants and cities using remote sensors with a novel Lagrangian chemical system that preserves the non-linear relationship between <inline-formula><mml:math id="M752" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations and emissions. This development is motivated by the desire to reduce computational costs by replacing the conventional kinetics-based approach to solve for concentration changes with a simplified parameterization relying on as few variables as possible. Such a simplified parameterization can be improved and adopted by other Lagrangian models. This work expands the capability of (X-)STILT in tracing the origins of chemically reactive species to simulate their concentrations at satellite soundings (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). Although uncertainties exist in modeling atmospheric transport, mixing, and chemical processes, this study covers the key <inline-formula><mml:math id="M753" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical mechanisms, various error sources, model validation, and the benefit of using <inline-formula><mml:math id="M754" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to constrain <inline-formula><mml:math id="M755" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions and tracer–tracer emission ratios.</p>
      <p id="d1e10254">To evaluate our modeling system, which consists of the HYSPLIT–STILT core and modules of column weighting, simplified chemistry, and error analyses (Fig. <xref ref-type="fig" rid="Ch1.F1"/>), we compared modeled tropospheric <inline-formula><mml:math id="M756" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns using EPA-reported emissions against observed columns from TROPOMI over three power plants in the US (Fig. <xref ref-type="fig" rid="Ch1.F6"/>). The largest model–data discrepancies are found for overpasses with substantial wind directional biases. Across three power plants and seasons, the systematic bias informed by the model–data regression slope appears to be small when using EPA emissions. Switching <inline-formula><mml:math id="M757" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions from prior emissions to EPA (usually with a scaling factor of 2 to 3) greatly improves the model–data agreement, followed by the impact of whether to turn on the <inline-formula><mml:math id="M758" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemistry. Upgrading to a higher-resolution meteorological field minimally alleviated the model–data mismatches but should be considered for regions with complex terrain. Subtracting the background <inline-formula><mml:math id="M759" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is necessary, especially over stagnant days and regions with strong non-anthropogenic emission influences. Based on our limited case studies, <inline-formula><mml:math id="M760" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> simulations of power plants are usually more challenging compared to urban areas with more of the areal source for several reasons (from atmospheric mixing, spatial heterogeneity, and vertical profiles of emissions to the exposure of ambient ozone-rich air when estimating the <inline-formula><mml:math id="M761" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M762" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ratios).</p>
      <p id="d1e10339">Our comprehensive analyses on modeling <inline-formula><mml:math id="M763" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> further shed light on the estimation of <inline-formula><mml:math id="M764" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions at the local scale. Modeling two species in a consistent modeling framework makes the quantification of two key bias terms easier, namely from wind directions and emission locations. For example, we demonstrate the use of model–data <inline-formula><mml:math id="M765" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes to obtain a quantitative value of the directional biases associated with the modeled wind (Sect. <xref ref-type="sec" rid="Ch1.S5.SS2.SSS1"/>) and biases with the emission distribution in prior inventories like EDGARv6 (Sect. <xref ref-type="sec" rid="Ch1.S4.SS2"/>). As growing interest arose from the joint use of GHG and air pollutants, we also investigated the differences between <inline-formula><mml:math id="M766" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M767" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enhancement ratios and the <inline-formula><mml:math id="M768" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ENO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M769" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ECO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission ratios (Fig. <xref ref-type="fig" rid="Ch1.F9"/>). Such differences between the two tracer–tracer ratios vary across seasons and space and are again driven by the non-linearity between the emissions and concentrations. For instance, to be consistent with emission ratios at the sources, observation-based enhancement ratios need to be scaled up by 2 to 3 times in the summer months due to faster photochemistry. Soundings with a separation of 60 <inline-formula><mml:math id="M770" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> from the site center need to be scaled up further by roughly 1.3 times more than near-field soundings when concerning changes in chemical tendency.</p>
      <p id="d1e10434">STILT–<inline-formula><mml:math id="M771" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, in conjunction with the forthcoming local-scale multi-tracer non-linear modeling and inversion system (Fig. <xref ref-type="fig" rid="Ch1.F1"/>), can be employed to simultaneously constrain emissions from multiple species of both GHGs and key air pollutants, along with their respective emission ratios, allowing for improvements in sectoral attributions. Such a framework<?pagebreak page6180?> has the potential to be scaled up to a large number of cities for estimating emissions of <inline-formula><mml:math id="M772" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M773" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and possibly other tracers from space-based sensors.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>WRF-Chem setups</title>
      <p id="d1e10483">We used meteorological fields from the Global Forecast System <xref ref-type="bibr" rid="bib1.bibx55" id="paren.85"><named-content content-type="pre">0.25<inline-formula><mml:math id="M774" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M775" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.25<inline-formula><mml:math id="M776" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> GFS-FNL;</named-content></xref> to generate hourly outputs at a grid spacing of 12 <inline-formula><mml:math id="M777" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> for 5 consecutive days in each month of 2020. The first day is regarded as the spin-up time to stabilize the model whose concentration fields are excluded from the following analyses. Anthropogenic emissions of air pollutants and VOCs are adopted, respectively, from EDGARv6.1 <xref ref-type="bibr" rid="bib1.bibx51" id="paren.86"/> and EDGARv4.3.2 <xref ref-type="bibr" rid="bib1.bibx20" id="paren.87"/>, with biogenic VOC emissions derived from the Model of Emissions of Gases and Aerosols from Nature <xref ref-type="bibr" rid="bib1.bibx17" id="paren.88"><named-content content-type="pre">MEGANv2;</named-content></xref>. No lightning or soil <inline-formula><mml:math id="M778" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source is included in WRF-Chem simulations. The boundary condition of chemicals relies on the CAM-CHEM model <xref ref-type="bibr" rid="bib1.bibx5" id="paren.89"/>. The most important part is the gas-phase photochemistry scheme, which is driven by the second generation of the Regional Acid Deposition Model <xref ref-type="bibr" rid="bib1.bibx70" id="paren.90"><named-content content-type="pre">RADM2;</named-content></xref>, with dry and wet depositions included. RADM2 is well suited under polluted environments but may miss several key aromatic components for pristine environments dominated by biogenic volatile organic compounds (BVOCs; <xref ref-type="bibr" rid="bib1.bibx71" id="altparen.91"/>).</p>
</app>

<app id="App1.Ch1.S2">
  <?xmltex \currentcnt{B}?><label>Appendix B</label><title>Technical notes on regional wind assessment</title>
      <p id="d1e10566">We assess the wind uncertainty associated with two meteorological fields that drive (X-)STILT, namely the 3 <inline-formula><mml:math id="M779" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> HRRR and 0.25<inline-formula><mml:math id="M780" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> GFS. The first approach targets regional wind error statistics by comparing modeled wind fields (both HRRR and GFS) against true wind observations at radiosonde stations. The wind error statistic is further used to translate wind errors to uncertainties in <inline-formula><mml:math id="M781" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Radiosonde balloons are normally launched at 00:00 or 12:00 UTC. Only <inline-formula><mml:math id="M782" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>- and <inline-formula><mml:math id="M783" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula>-component wind observations for levels below 2 <inline-formula><mml:math id="M784" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> over the 24 <inline-formula><mml:math id="M785" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> ahead of the TROPOMI overpass time are selected. We then estimate the random uncertainties in the <inline-formula><mml:math id="M786" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>-/<inline-formula><mml:math id="M787" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula>-component wind speed (i.e., RMSE in <inline-formula><mml:math id="M788" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and normalize the RMSEs over mean wind speed to yield fractional uncertainties (%) for every overpass (Fig. S3). For example, fractional wind uncertainties over Missouri (around 20 % to 40 %) are generally smaller than uncertainties over mountainous lands in Utah (<inline-formula><mml:math id="M789" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 40 %), which relates to the model's capabilities in resolving topography and topographic flows. In addition, HRRR-based winds at radiosonde stations appear to be more erroneous compared to GFS-based winds. High-resolution models provide better descriptions of the surface land cover type, terrain height, and surface roughness, which may improve the spatial variability in the PBLH <xref ref-type="bibr" rid="bib1.bibx41" id="paren.92"/> and wind vectors. Without true wind measurements, it remains unclear whether higher-resolution models can capture more accurate fine-scale meteorology. Nevertheless, the radiosonde analysis provides an overall picture of the regional wind uncertainty.</p>
      <p id="d1e10670">To propagate wind error statistics to transport uncertainty in concentrations, a wind error component is added to the mean wind component and the turbulence component when generating backward trajectories. Transport uncertainties in <inline-formula><mml:math id="M790" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are defined as the differences in variations in the parcel-specific <inline-formula><mml:math id="M791" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio with the proper vertical weighting of AK and pressure-weighting function (PWF) between the perturbed and the initial set of the trajectories.</p>
</app>

<app id="App1.Ch1.S3">
  <?xmltex \currentcnt{C}?><label>Appendix C</label><title>Technical notes on near-field wind bias quantification</title>
      <p id="d1e10703">As introduced in Sect. <xref ref-type="sec" rid="Ch1.S5.SS2.SSS1"/>, a <inline-formula><mml:math id="M792" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plume from either model or retrieval is rotated clockwise (<inline-formula><mml:math id="M793" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> from <inline-formula><mml:math id="M794" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>180 to <inline-formula><mml:math id="M795" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5<inline-formula><mml:math id="M796" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, with a spacing of 5<inline-formula><mml:math id="M797" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) or counter-clockwise (from 5 to 180<inline-formula><mml:math id="M798" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) around the emission source and then resampled onto the original TROPOMI pixels (Fig. S16). We then multiply gridded <inline-formula><mml:math id="M799" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from the initial plume with gridded <inline-formula><mml:math id="M800" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from each rotated plume under each rotating angle, <inline-formula><mml:math id="M801" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>. The cross-product of two <inline-formula><mml:math id="M802" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes (<inline-formula><mml:math id="M803" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">XP</mml:mi></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M804" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">ppb</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) measures how two <inline-formula><mml:math id="M805" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes are similar in terms of their spatial structures, as one is rotated around its source location for 360<inline-formula><mml:math id="M806" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (Eq. <xref ref-type="disp-formula" rid="App1.Ch1.S3.E10"/>):
          <disp-formula id="App1.Ch1.S3.E10" content-type="numbered"><label>C1</label><mml:math id="M807" display="block"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">XP</mml:mi></mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>y</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">initial</mml:mi></mml:msubsup></mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>y</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">rotated</mml:mi></mml:msubsup></mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>y</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e10937">We next calculate the square-root mean of these sounding-specific cross-products per rotating angle (Fig. <xref ref-type="fig" rid="Ch1.F8"/>a). The peak of the Gaussian shape suggests when two plume signals reach the maximum correlation, while the wing suggests when one plume signal starts to decouple with another plume signal. The plume that undergoes rotation (<inline-formula><mml:math id="M808" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">rotated</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>) can either be a modeled plume with different model configurations (e.g., GFS or HRRR; with or without chemistry) or an observed plume. For example, root mean products based on the simulations without chemistry display a high bias compared to root mean products using observed <inline-formula><mml:math id="M809" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which implies that the entire modeled scene including the background signal is biased high when <inline-formula><mml:math id="M810" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime is not included. When an observed plume was rotated to match its original self, then the <inline-formula><mml:math id="M811" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">tNO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> product can serve as a baseline. Normalizing the cross-products offers a diagnostic (Fig. <xref ref-type="fig" rid="Ch1.F8"/>), analogous to the concept of the cross-correlation coefficient.</p>
</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <?pagebreak page6181?><p id="d1e10995">TROPOMI is available at  <ext-link xlink:href="https://doi.org/10.5270/S5P-9bnp8q8" ext-link-type="DOI">10.5270/S5P-9bnp8q8</ext-link> <xref ref-type="bibr" rid="bib1.bibx11" id="paren.93"/>. OCO-3 Level 2 B10p4r <inline-formula><mml:math id="M812" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">XCO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> data are available at <ext-link xlink:href="https://doi.org/10.5067/970BCC4DHH24" ext-link-type="DOI">10.5067/970BCC4DHH24</ext-link> <xref ref-type="bibr" rid="bib1.bibx56" id="paren.94"/>. EDGARv6.1 emissions can be accessed from <uri>https://data.jrc.ec.europa.eu/dataset/df521e05-6a3b-461c-965a-b703fb62313e</uri> <xref ref-type="bibr" rid="bib1.bibx51" id="paren.95"/> and have been preprocessed. The STILT–<inline-formula><mml:math id="M813" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> v1 model is built on previous efforts of the X-STILT model in modeling <inline-formula><mml:math id="M814" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. The exact version used in the paper is archived on Zenodo at <ext-link xlink:href="https://doi.org/10.5281/zenodo.8057850" ext-link-type="DOI">10.5281/zenodo.8057850</ext-link> <xref ref-type="bibr" rid="bib1.bibx83" id="paren.96"/>. The GFS and HRRR meteorological files are available from the READY website (<uri>https://www.ready.noaa.gov/archives.php</uri>, <xref ref-type="bibr" rid="bib1.bibx63" id="altparen.97"/>).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e11063">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/gmd-16-6161-2023-supplement" xlink:title="pdf">https://doi.org/10.5194/gmd-16-6161-2023-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e11072">DW, POW, and JL designed the modeling experiments and contributed to the interpretation of results. DW realized the STILT–<inline-formula><mml:math id="M815" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> model code and conducted WRF-Chem simulations. Specific insights from individuals were provided by POW, JLL, and PIP for <inline-formula><mml:math id="M816" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chemical parameterization; JLL for the WRF-Chem model setup; and JCL for the Lagrangian inter-parcel mixing. All authors contributed to writing and editing the paper.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e11100">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e11106">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e11112">The computations presented here were conducted in the Resnick High-Performance Computing Center, a facility supported by the Resnick Sustainability Institute at the California Institute of Technology. We acknowledge the use of the WRF-Chem preprocessor tool of mozbc, which was provided by the Atmospheric Chemistry Observations and Modeling Lab (ACOM) of the National Center for Atmospheric Research (NCAR). The authors acknowledge the National Oceanic and Atmospheric Administration (NOAA) Air Re45 sources Laboratory (ARL) for the provision of the GFS and HRRR meteorological files used in this publication, which were downloaded from the READY website (<uri>http://www.ready.noaa.gov</uri>, last access: 1 May 2018). The first author extends their appreciation to Kazuyuki Miyazaki (JPL) for discussions on <inline-formula><mml:math id="M817" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> modeling and Rob Nelson and Annmarie Eldering (JPL) for the OCO-3 data. The authors thank the two anonymous referees for their careful reading of our paper and for their constructive suggestions that have helped improve our study.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e11132">The analysis has been supported by the National Aeronautics and Space Administration (NASA; grant no. 80NSSC21K1064). A portion of the research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with NASA (grant no. 80NM0018D0004).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e11138">This paper was edited by Jason Williams and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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