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<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \bartext{Development and technical paper}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-16-3083-2023</article-id><title-group><article-title>Updated isoprene and terpene emission factors for the Interactive BVOC (iBVOC) emission scheme in the United Kingdom Earth System Model (UKESM1.0)
</article-title><alt-title>Updated UKESM1 BVOC emission factors</alt-title>
      </title-group><?xmltex \runningtitle{Updated UKESM1 BVOC emission factors}?><?xmltex \runningauthor{J.~Weber et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Weber</surname><given-names>James</given-names></name>
          <email>j.weber@sheffield.ac.uk</email>
        <ext-link>https://orcid.org/0000-0003-0643-2026</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>King</surname><given-names>James A.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8825-0183</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Sindelarova</surname><given-names>Katerina</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0774-6078</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Val Martin</surname><given-names>Maria</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9715-0504</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Leverhulme Centre for Climate Change Mitigation, School of
Biosciences, University of Sheffield, S10 2TN, Sheffield, UK</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Atmospheric Physics, Faculty of Mathematics and
Physics, Charles University, Prague, Czech Republic</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">James Weber (j.weber@sheffield.ac.uk)</corresp></author-notes><pub-date><day>1</day><month>June</month><year>2023</year></pub-date>
      
      <volume>16</volume>
      <issue>10</issue>
      <fpage>3083</fpage><lpage>3101</lpage>
      <history>
        <date date-type="received"><day>4</day><month>August</month><year>2022</year></date>
           <date date-type="rev-request"><day>12</day><month>December</month><year>2022</year></date>
           <date date-type="rev-recd"><day>30</day><month>March</month><year>2023</year></date>
           <date date-type="accepted"><day>23</day><month>April</month><year>2023</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2023 James Weber et al.</copyright-statement>
        <copyright-year>2023</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/gmd-16-3083-2023.html">This article is available from https://gmd.copernicus.org/articles/gmd-16-3083-2023.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/gmd-16-3083-2023.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/gmd-16-3083-2023.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e123">Biogenic volatile organic compounds (BVOCs) influence atmospheric
composition and climate, and their emissions are affected by changes in land use and land cover (LULC). Current Earth system models calculate BVOC emissions using parameterisations involving surface temperature,
photosynthetic activity, CO<inline-formula><mml:math id="M1" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and vegetation type and use emission factors (EFs) to represent the influence of vegetation on BVOC emissions. We present new EFs for the Interactive BVOC Emission Scheme (iBVOC) used in the United
Kingdom Earth System Model (UKESM), based on those used by the Model of
Emissions of Gases and Aerosols from Nature (MEGAN) v2.1 scheme.</p>

      <p id="d1e135">Our new EFs provide an alternative to the current EFs used in iBVOC, which
are derived from older versions of MEGAN and the Organizing Carbon and
Hydrology in Dynamic Ecosystem (ORCHIDEE) emission scheme. We show that
current EFs used by iBVOC result in an overestimation of isoprene emissions
from grasses, particularly C<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses, due to an oversimplification that
incorporates the EF of shrubs (high isoprene emitters) into the EF for C<inline-formula><mml:math id="M3" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>
and C<inline-formula><mml:math id="M4" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses (low isoprene emitters). The current approach in iBVOCs
assumes that C<inline-formula><mml:math id="M5" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses are responsible for 40 % of total simulated
isoprene emissions in the present day, which is much higher than other
estimates of <inline-formula><mml:math id="M6" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.3 %–10 %.</p>

      <p id="d1e181">Our new isoprene EFs substantially reduce the amount of isoprene emitted by
C<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasslands, in line with observational studies and other modelling
approaches, while also improving the emissions from other known sources,
such as tropical broadleaf trees. Similar results are found from the change
to the terpene EF.</p>

      <p id="d1e193">With the new EFs, total global isoprene and terpene emissions are within the
range suggested by the literature. While the existing model biases in the isoprene column are slightly exacerbated with the new EFs, other drivers of this bias are also noted. The disaggregation of shrub and grass EFs provides a more faithful description of the contribution of different vegetation types to
BVOC emissions, which is critical for understanding BVOC emissions in the
pre-industrial and under different future LULC scenarios, such as those
involving wide-scale reforestation or deforestation. Our work highlights the importance of using updated and accurate EFs to improve the representation
of BVOC emissions in Earth system models and provides a foundation for further improvements in this area.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>UK Research and Innovation</funding-source>
<award-id>MR/T019867/1</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e205">Biogenic volatile organic compounds (BVOCs) are emitted in large quantities
by vegetation across the globe and undergo chemical reactions in the
atmosphere. These reactions influence the atmosphere's radiative balance by
perturbing atmospheric oxidant levels and thus the greenhouse gases methane
and ozone as well as sulfate aerosol, producing secondary organic aerosol (SOA). The influence of BVOCs on climate (Thornhill et al., 2021;
Weber et al., 2022) necessitates accurate modelling of their emissions and
the chemistry<?pagebreak page3084?> they undergo in global chemistry-climate models such as the
United Kingdom Earth System Model version 1 (UKESM1) used here.</p>
      <p id="d1e208">Isoprene (2-methyl-1,3-butadiene) and monoterpenes (a range of molecules
consisting of two isoprene units and referred to hereafter as terpenes for
consistency with the nomenclature in the Interactive BVOC Emission Scheme –
iBVOC) are the most widely emitted BVOCs, yet there remains significant uncertainty in their total emissions. In the present day (PD), often taken
as the average over 1980–2014 or 2000–2014, global isoprene emission estimates include 590 Tg yr<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Sindelarova et al., 2014) or 440 Tg yr<inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Sindelarova et al., 2022), with the majority of estimates falling in the range 450–620 Tg yr<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 1, Messina et al., 2016). Averaged
over 1980–2014, the mean of seven Earth system models participating in the 6th Coupled Model Intercomparison Project (CMIP6) was 505 Tg yr<inline-formula><mml:math id="M11" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(range 67 Tg yr<inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) (Cao et al., 2021).</p>
      <p id="d1e271">PD terpene emission estimates range from <inline-formula><mml:math id="M13" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 35 Tg yr<inline-formula><mml:math id="M14" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(Schurgers et al., 2009) to 160 Tg yr<inline-formula><mml:math id="M15" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Guenther et al., 2012), with most estimates falling in the range of 90–135 Tg yr<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Messina et al.,
2016).</p>
      <p id="d1e317">Improvements to the understanding of the oxidation chemistry of isoprene
(e.g. HO<inline-formula><mml:math id="M17" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> recycling; Peeters et al., 2009; Wennberg et al., 2018) and terpenes (e.g. the formation of highly oxidised organic molecules (HOMs);
Bianchi et al., 2019) over the last decade have started to be included in
global chemistry-climate models (e.g. CRI-Strat 2; Weber et al., 2021; MOZART TS2; Schwantes et al., 2020), helping to improve the simulation of
BVOC chemistry in these models. Comparison of the atmospheric response to a
doubling of BVOC emissions in UKESM1 when two different chemical mechanisms
(one with basic BVOC chemistry, one with much more comprehensive BVOC
chemistry including the recent advances in isoprene chemistry) were used revealed how influential the modelling of chemistry can be on the simulated
climatic impact of BVOCs (Weber et al., 2022). The warming effect of BVOC
doubling was 43 % smaller when using the more up-to-date BVOC chemistry in UKESM1.</p>
      <p id="d1e330">While the simulation of BVOC chemistry is important for model performance,
the emissions of BVOCs must also be simulated as faithfully as possible with
inclusion of the dependencies on meteorology (temperature and solar
radiation), atmospheric composition (CO<inline-formula><mml:math id="M18" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) and land surface cover.
Within climate models this simulation is often performed by specific modules
such as iBVOC (Pacifico et al., 2011) or the Model of Emissions of Gases and
Aerosols from Nature (MEGAN) v2.1 (Guenther et al., 2012) (more detail is
provided in Sect. 2). These modules combine external variables
(temperature, CO<inline-formula><mml:math id="M19" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, photosynthetic activity) with the vegetation distribution and vegetation-specific emission factors (EFs) in a grid cell to
calculate emissions of various BVOCs for that cell. The emission factors are
the emission flux from a particular vegetation type per unit mass or area
under a set of standard conditions and are typically derived from emission
flux measurements from a range of specific vegetation species or an
ecoregion as a whole (e.g. Guenther et al., 1995). Thus, emission factors provide a link between vegetation cover (i.e. LULC) and BVOC emissions and
are central to simulating emissions accurately, with incorrect values driving model biases. Updating emission factors in UKESM is the major focus of this study.</p>
      <p id="d1e351">The majority of isoprene and terpene emissions occur in the tropics with
smaller contributions from temperate and boreal forests. Using MEGAN v2.1
with year 2000 simulated land cover from the Community Land Model version
4.0 (CLM4.0; Lawrence et al., 2011), Guenther et al. (2012) estimated that
broadleaf evergreen tropical trees and broadleaf deciduous tropical trees
account for 46 % (51 %) and 33 % (28 %) of total isoprene
(monoterpene) emissions respectively.</p>
      <p id="d1e354">C<inline-formula><mml:math id="M20" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass, which is also found in the tropics (e.g. in savannas) and at mid latitudes, is believed to be a much weaker emitter of isoprene (e.g. Guenther et al., 2012; Loreto and Fineschi, 2015) yet currently has an
emission factor in iBVOC equal to that of tropical broadleaf evergreen
trees, a known isoprene emitter. This is the major focus of the emission
factor updates in this study and is discussed further in Sect. 2.</p>
      <p id="d1e366">This study describes the development and evaluation of new emission factors
for isoprene and monoterpenes for UKESM1. The work aims to improve the
dependence of BVOC emissions on vegetation type and thus the description of
biosphere–atmosphere interactions. While the primary focus of this work is isoprene emissions, for consistency, we also propose updates to terpene emission factors.</p>
      <p id="d1e369">In Sect. 2 we first describe the current approach to modelling isoprene
and terpene emissions in UKESM1 and highlight its limitations before
detailing the calculation of new emission factors. In Sect. 3 we outline
the model simulations performed to assess the impact of the new emission factors and discuss the results in Sect. 4. Conclusions are presented in
Sect. 5.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Development of new emission factors</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>iBVOC in UKESM1</title>
      <?pagebreak page3085?><p id="d1e387">UKESM1 is an Earth system model that couples individual component models which simulate the ocean, land surface, atmosphere and cryosphere (Sellar et
al., 2020). Each component can also be run on their own (so-called
“stand-alone”). The two components of relevance for this study are the land surface model (Joint United Kingdom Land Environment Simulator – JULES)
(Best et al., 2011; Clark et al., 2011) and the atmospheric chemistry and
aerosol model (United Kingdom Chemistry and Aerosols – UKCA; Archibald et al., 2020).
<?xmltex \hack{\newpage}?>
In JULES the land surface is described by dividing it into categories which
can be grouped as vegetation (trees, grasses and shrubs) and non-vegetation
(urban, bare soil, water, ice) (Sellar et al., 2020). Depending on the configuration, there are between 5 and 13 types of vegetation, termed plant
functional types (PFTs). Emissions of isoprene and terpenes are calculated
using iBVOC (Pacifico et al., 2011), a module within JULES that reads in the simulated land surface. When running
as part of the fully coupled UKESM1, emissions from iBVOC in JULES are passed to UKCA, which simulates their addition to the atmosphere. When UKESM1 is run in atmosphere-only mode where vegetation cover is prescribed (along with
sea surface temperatures, sea ice and ocean biogeochemistry), iBVOC can be used to calculate BVOC emissions from the prescribed vegetation and pass
these emissions to UKCA. The latter configuration is used in this study.</p>
      <p id="d1e392">Each PFT in UKESM1 has an associated emission factor (EF<inline-formula><mml:math id="M21" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>) for
isoprene (IEF<inline-formula><mml:math id="M22" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>) and terpenes (TEF<inline-formula><mml:math id="M23" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>) with units of mass of
emitted carbon per leaf dry weight (dw) per hour (<inline-formula><mml:math id="M24" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>gC g<inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). These EF<inline-formula><mml:math id="M27" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values represent the
emission flux for a given PFT under the standard conditions specified in
Pacifico et al. (2011) (30 <inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, 1000 <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol m<inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> of photosynthetically
active radiation (PAR), 370 ppm CO<inline-formula><mml:math id="M32" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>). We note that subscript “mass”
is used here to distinguish these emission factors from those with
dimensions of mass per unit area of land surface per unit time (e.g. <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">surface</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), which we denote as EF<inline-formula><mml:math id="M36" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> and which are used in the MEGAN v2.1 scheme discussed later.</p>
      <p id="d1e562">In iBVOC, EF<inline-formula><mml:math id="M37" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> are combined with other PFT-specific parameters, including photosynthetic activity and external variables including
temperature and CO<inline-formula><mml:math id="M38" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration, to calculate emissions of BVOCs per PFT per grid cell. The dependencies on temperature, CO<inline-formula><mml:math id="M39" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration
and photosynthetic activity are given in Pacifico et al. (2011).</p>
      <p id="d1e592">iBVOC was first implemented with the original five-PFT set-up in UKESM1 which divides vegetated regions into the categories of broadleaf trees, needleleaf trees, C<inline-formula><mml:math id="M40" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass, C<inline-formula><mml:math id="M41" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass and shrubs. IEF<inline-formula><mml:math id="M42" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values (Table 1) and the
standard conditions were taken from Guenther et al. (1995).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e626">IEF in the five-PFT set-up.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">PFT</oasis:entry>
         <oasis:entry colname="col2">IEF<inline-formula><mml:math id="M43" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>  / <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">gC</mml:mi></mml:mrow></mml:math></inline-formula> g<inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf trees</oasis:entry>
         <oasis:entry colname="col2">35</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf trees</oasis:entry>
         <oasis:entry colname="col2">12</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M47" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">16</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M48" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Shrubs</oasis:entry>
         <oasis:entry colname="col2">20</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{1}?></table-wrap>

      <p id="d1e761">When running JULES stand-alone over the period 1990–1999, these IEF<inline-formula><mml:math id="M49" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values yielded simulated total isoprene emissions of 535 TgC yr<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (606 Tg<inline-formula><mml:math id="M51" display="inline"><mml:msub><mml:mi/><mml:mtext>isoprene</mml:mtext></mml:msub></mml:math></inline-formula> yr<inline-formula><mml:math id="M52" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), with 9 % coming from C<inline-formula><mml:math id="M53" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass (Pacifico et al., 2011).</p>
      <p id="d1e815">To improve land surface modelling, configurations of JULES with 9 and 13
PFTs were developed with the 13-PFT approach, the current standard in UKESM1 (Table 2) and the configuration used for UKESM1's contributions to
CMIP6 (Sellar et al., 2020). Going from the 5-PFT configuration to the 13-PFT configuration, EF<inline-formula><mml:math id="M54" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values were assigned partly from those used in the 5-PFT configuration (e.g. the 13-PFT broadleaf deciduous tree category has the same IEF<inline-formula><mml:math id="M55" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> as the 5-PFT broadleaf tree category) and partly from the Organizing Carbon and
Hydrology in Dynamic Ecosystem (ORCHIDEE) vegetation scheme (Lathière et
al., 2006). Unlike the 5-PFT configuration, the 13-PFT configuration does
not appear to have been separately validated against observations or other
model estimates, and furthermore, the IEF<inline-formula><mml:math id="M56" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of C<inline-formula><mml:math id="M57" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass was increased from 8 to 24 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>gC g<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Table 2).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e893">IEF<inline-formula><mml:math id="M61" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M62" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">gC</mml:mi></mml:mrow></mml:math></inline-formula> g<inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in the 13-PFT set-up of UKESM1.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">PFT</oasis:entry>
         <oasis:entry colname="col2">Abbreviation</oasis:entry>
         <oasis:entry colname="col3">iBVOC standard</oasis:entry>
         <oasis:entry colname="col4">ORCHIDEEv1<inline-formula><mml:math id="M69" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">ORCHIDEE v2<inline-formula><mml:math id="M70" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf deciduous trees</oasis:entry>
         <oasis:entry colname="col2">Br-Dec</oasis:entry>
         <oasis:entry colname="col3">35</oasis:entry>
         <oasis:entry colname="col4">24/45/8<inline-formula><mml:math id="M71" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">24/45/18<inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf evergreen tropical trees</oasis:entry>
         <oasis:entry colname="col2">Br-Ev-Trop</oasis:entry>
         <oasis:entry colname="col3">24</oasis:entry>
         <oasis:entry colname="col4">24</oasis:entry>
         <oasis:entry colname="col5">24</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf evergreen temperate trees</oasis:entry>
         <oasis:entry colname="col2">Br-Ev-Temp</oasis:entry>
         <oasis:entry colname="col3">16</oasis:entry>
         <oasis:entry colname="col4">16</oasis:entry>
         <oasis:entry colname="col5">16</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf deciduous trees</oasis:entry>
         <oasis:entry colname="col2">Ne-Dec</oasis:entry>
         <oasis:entry colname="col3">8</oasis:entry>
         <oasis:entry colname="col4">8</oasis:entry>
         <oasis:entry colname="col5">0.5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf evergreen trees</oasis:entry>
         <oasis:entry colname="col2">Ne-Ev</oasis:entry>
         <oasis:entry colname="col3">8</oasis:entry>
         <oasis:entry colname="col4">8/8<inline-formula><mml:math id="M73" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">8/8<inline-formula><mml:math id="M74" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M75" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M76" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col3">16</oasis:entry>
         <oasis:entry colname="col4">16</oasis:entry>
         <oasis:entry colname="col5">12</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M77" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> crop</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M78" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> crop</oasis:entry>
         <oasis:entry colname="col3">5</oasis:entry>
         <oasis:entry colname="col4">5</oasis:entry>
         <oasis:entry colname="col5">5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M79" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M80" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
         <oasis:entry colname="col3">5</oasis:entry>
         <oasis:entry colname="col4">5</oasis:entry>
         <oasis:entry colname="col5">5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M81" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M82" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col3">24</oasis:entry>
         <oasis:entry colname="col4">24</oasis:entry>
         <oasis:entry colname="col5">18</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M83" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> crop</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M84" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> crop</oasis:entry>
         <oasis:entry colname="col3">5</oasis:entry>
         <oasis:entry colname="col4">5</oasis:entry>
         <oasis:entry colname="col5">5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M85" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M86" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
         <oasis:entry colname="col3">5</oasis:entry>
         <oasis:entry colname="col4">5</oasis:entry>
         <oasis:entry colname="col5">5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Shrub deciduous</oasis:entry>
         <oasis:entry colname="col2">Shrub-Dec</oasis:entry>
         <oasis:entry colname="col3">10</oasis:entry>
         <oasis:entry colname="col4">Not in scheme</oasis:entry>
         <oasis:entry colname="col5">Not in scheme</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Shrub evergreen</oasis:entry>
         <oasis:entry colname="col2">Shrub-Ev</oasis:entry>
         <oasis:entry colname="col3">20</oasis:entry>
         <oasis:entry colname="col4">Not in scheme</oasis:entry>
         <oasis:entry colname="col5">Not in scheme</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d1e942"><inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> Lathière et al. (2006),
<inline-formula><mml:math id="M66" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> Messina et al. (2016),
<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> tropical/temperate/boreal, area-weighted mean,
<inline-formula><mml:math id="M68" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> temperate/boreal.</p></table-wrap-foot><?xmltex \gdef\@currentlabel{2}?></table-wrap>

      <p id="d1e1412">In the context of this study, the limitation with using ORCHIDEE-derived
EF<inline-formula><mml:math id="M87" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values for the 13-PFT configuration in UKESM1 is that the
ORCHIDEE scheme does not simulate shrubs as a separate PFT. Rather, the IEFs from shrubs are incorporated into the IEF for C<inline-formula><mml:math id="M88" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M89" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass ORCHIDEE PFTs.
This means that the C<inline-formula><mml:math id="M90" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M91" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass PFTs in ORCHIDEE are not equivalent to those in UKESM1 and should not be used to provide the IEF values.</p>
      <p id="d1e1461">Lathière et al. (2006) noted that ORCHIDEE considers high IEF values for
grasses and also acknowledged the high degree of uncertainty in this area,
as several other studies have found low emissions of isoprene from grasses and that a change to these values would lead to different regional
distributions of emissions, a topic explored in Sect. 4.</p>
      <p id="d1e1464">In the updated version of ORCHIDEE, Messina et al. (2016) also note the inclusion of shrubs in the EF values for the grass PFTs in ORCHIDEE, and it remains unclear whether the ORCHIDEE values for C<inline-formula><mml:math id="M92" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M93" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass are composed
totally or only partially of the EF<inline-formula><mml:math id="M94" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> from shrubs. Nevertheless, as
UKESM1 simulates deciduous and evergreen shrubs as separate PFTs with their
own emission factors, including the IEF<inline-formula><mml:math id="M95" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of shrubs in those for grasses is not correct.</p>
      <p id="d1e1503">Furthermore, as shrubs are relatively strong isoprene emitters (e.g. Lathière et al., 2006; Guenther et al., 2012) and C<inline-formula><mml:math id="M96" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses are not (e.g. Guenther et al., 2012; Loreto and Fineschi, 2015), this approach artificially increases the isoprene production potential from the UKESM1 C<inline-formula><mml:math id="M97" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>
grass PFTs. This is exacerbated by the fact that large swathes of C<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>
grassland are in warm regions (e.g. sub-Saharan Africa and eastern Brazil), further increasing isoprene production given its strong temperature
dependence (for example, isoprene emissions are 35 % higher in iBVOC at
28 <inline-formula><mml:math id="M99" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C than 25 <inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). Shrubs by contrast are typically
found in higher-latitude regions where the lower temperatures lead to lower isoprene emissions, despite the relatively high IEF.</p>
</sec>
<?pagebreak page3086?><sec id="Ch1.S2.SS2">
  <label>2.2</label><title>MEGAN v2.1 in CESM2</title>
      <p id="d1e1559">The Community Earth System Model version 2 (CESM2) is another Earth system
model which includes atmospheric, land, ocean and sea ice models that can be run in stand-alone or coupled configurations (Danabasoglu et al., 2020).
The land model component is the Community Land Model version 5 (CLM5)
(Lawrence et al., 2019), which also simulates BVOC emissions based on
prevailing atmospheric conditions and land surface cover using MEGAN v2.1.
The development of MEGAN is described in Guenther et al. (1995, 2006,
2012). Like iBVOC, MEGAN v2.1 includes parameterisations for dependencies on
temperature, CO<inline-formula><mml:math id="M101" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and PAR while also describing the impact of leaf age
and soil moisture. A full description of the parameterisations is given in
Guenther et al. (2012). CLM5 has 16 types of natural vegetation (including
bare ground) and eight active crops. Similarly to JULES, vegetation and
crops are represented by PFTs, each having specific ecophysiological,
phenological and biogeochemical parameters (Lawrence et al., 2019). MEGAN
v2.1 combines these parameterisations with PFT-specific emission factors
(which for MEGAN have units of <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">surface</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M104" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) to calculate BVOC emissions for a range of BVOCs. Furthermore, unlike ORCHIDEE, MEGAN v2.1 considers grasses and shrubs separately, with emission
factors for each. This means that the MEGAN EFs for C<inline-formula><mml:math id="M105" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M106" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses are more suitable as a starting point for calculating EF values for iBVOC.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><?xmltex \opttitle{Calculation of EF${}_{\mathrm{mass}}$ from MEGAN for iBVOC}?><title>Calculation of EF<inline-formula><mml:math id="M107" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> from MEGAN for iBVOC</title>
      <p id="d1e1643">In this study, we use the MEGAN v2.1 EF (Table 3 of Guenther et al., 2012) as
it offers an alternative source of EFs. We note that the same EFs for isoprene are used in the more recently released version MEGAN v3.0 (e.g. Zhang et al., 2021). MEGAN v2.1 in CESM2 considers 15 PFTs (excluding bare soil), so
we had to lump certain PFTs during the conversion to IEF for iBVOC to match
the 13-PFT classification in JULES. Table 3 shows the MEGAN v2.1 (CESM2) PFTs and the corresponding equivalents in iBVOC (UKESM1). Only seven PFTs in MEGAN v2.1 have a direct equivalent in UKESM1, allowing direct calculation
of the EF<inline-formula><mml:math id="M108" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>; the other eight PFTs were lumped into groups and the Crop 1 PFT in MEGAN v2.1 was used for the C<inline-formula><mml:math id="M109" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M110" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> crop and pasture PFTs in
UKESM1.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><?xmltex \currentcnt{3}?><label>Table 3</label><caption><p id="d1e1676">MEGAN PFTs and corresponding UKESM1 PFTs.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="5cm"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="5cm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">MEGAN PFT(s)</oasis:entry>
         <oasis:entry colname="col2">UKESM1 PFT</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col2" align="left">Direct equivalent </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Tropical broadleaf evergreen</oasis:entry>
         <oasis:entry colname="col2">Tropical broadleaf evergreen</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Temperate broadleaf evergreen</oasis:entry>
         <oasis:entry colname="col2">Temperate broadleaf evergreen</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf deciduous</oasis:entry>
         <oasis:entry colname="col2">Needleleaf deciduous</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M111" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M112" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Broadleaf evergreen shrub temperate</oasis:entry>
         <oasis:entry colname="col2">Shrub evergreen</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col2" align="left">Lumped species </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf evergreen temperate <?xmltex \hack{\hfill\break}?>Needleleaf evergreen boreal</oasis:entry>
         <oasis:entry colname="col2">Needleleaf evergreen</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf deciduous tropical <?xmltex \hack{\hfill\break}?>Broadleaf deciduous temperate <?xmltex \hack{\hfill\break}?>Broadleaf deciduous boreal</oasis:entry>
         <oasis:entry colname="col2">Broadleaf deciduous <?xmltex \hack{\hfill\break}?></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M113" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass <?xmltex \hack{\hfill\break}?>C<inline-formula><mml:math id="M114" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> arctic grass</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M115" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Broadleaf deciduous temperate shrub <?xmltex \hack{\hfill\break}?>Broadleaf deciduous boreal shrub</oasis:entry>
         <oasis:entry colname="col2">Shrub deciduous</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col2" align="left">Crops </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M116" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M117" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> crop, C<inline-formula><mml:math id="M118" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> pasture, <?xmltex \hack{\hfill\break}?>C<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> crop, C<inline-formula><mml:math id="M120" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{3}?></table-wrap>

      <p id="d1e1915">EFs in MEGAN are given in units of mass of species per unit area of land surface per unit time (e.g. <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g<inline-formula><mml:math id="M122" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">isoprene</mml:mi></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), as opposed to <inline-formula><mml:math id="M125" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>gC g<inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> used in UKESM1 and ORCHIDEE, and are denoted
hereafter as IEF<inline-formula><mml:math id="M128" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula>. Therefore, a conversion must be applied to make
these values comparable to the EFs used by iBVOC and ORCHIDEE, which are denoted as IEF<inline-formula><mml:math id="M129" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>.</p>
      <p id="d1e2014">To convert <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">EF</mml:mi><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to
<inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">EF</mml:mi><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, we adapt Eq. (5) of Messina et al. (2016) to yield Eq. (1).
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M132" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">EF</mml:mi><mml:mi mathvariant="normal">mass</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">IEF</mml:mi><mml:mi mathvariant="normal">area</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="normal">LAI</mml:mi><mml:mi mathvariant="normal">ref</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="normal">SLW</mml:mi></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">Carbon</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">species</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mi mathvariant="normal">CE</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where LAI<inline-formula><mml:math id="M133" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ref</mml:mi></mml:msub></mml:math></inline-formula> is the reference leaf area index used by MEGAN v2.1 (5 m<inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">leaf</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">surface</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>), SLW is the specific leaf weight (g<inline-formula><mml:math id="M136" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">surface</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>), the factor
<inline-formula><mml:math id="M138" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">Carbon</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">Species</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:math></inline-formula>
accounts for the fact that MEGAN v2.1
considers the mass flux of a given species and iBVOC and ORCHIDEE the mass
flux of carbon, and <inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mi mathvariant="normal">CE</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>  is the MEGAN canopy environment coefficient (0.57).</p>
      <?pagebreak page3087?><p id="d1e2199">Equation (1) is valid for emissions which are entirely dependent on PAR, as is the
case for isoprene in MEGAN v2.1. Emissions of monoterpenes have a
light-dependent fraction (LDF) and a light-independent fraction (LIDF <inline-formula><mml:math id="M140" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M141" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> LDF). In this case, Eq. (1) needs to be modified to give Eq. (2).<?xmltex \hack{\newpage}?>
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M142" display="block"><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="normal">EF</mml:mi><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">IEF</mml:mi><mml:mi mathvariant="normal">area</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="normal">LAI</mml:mi><mml:mi mathvariant="normal">ref</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="normal">SLW</mml:mi></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">Carbon</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">species</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>×</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="normal">LDF</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mi mathvariant="normal">CE</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">LDF</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d1e2304">The LDF varies between species, and we used the values given in Table 4 of
Guenther et al. (2012).</p>
      <p id="d1e2307">There are three main areas of uncertainty in the conversion: the lumping of
PFTs, the choice of SLW values and, for terpene emissions, the choice of
input TEF<inline-formula><mml:math id="M143" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> values.</p>
<sec id="Ch1.S2.SS3.SSS1">
  <label>2.3.1</label><title>PFT lumping</title>
      <p id="d1e2326">We lump the MEGAN PFTs (Table 3) by calculating the mean EF value weighted
by the area of each PFT. For example, the EF for the UKESM1 needleleaf evergreen PFT is calculated as the mean of the MEGAN EF for needleleaf
evergreen temperate and needleleaf evergreen boreal weighted by the total
areas of these two species. We use the year 2000 LULC specified in Table 3
of Guenther et al. (2012) for this lumping. The resulting EF<inline-formula><mml:math id="M144" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> value is then
used in Eq. (1) to calculate EF<inline-formula><mml:math id="M145" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>.</p>
      <p id="d1e2347">This approach necessarily introduces a dependency on the LULC assumption
employed because different LULC datasets (i.e. CESM, ORCHDIEE, UKESM1) report different total areas for each PFT. We also acknowledge that LULC
cover is likely to be different in past or future LULC scenarios, affecting
the validity of the weighting to some degree. However, this impact is
expected to be small and would also occur if the ORCHIDEE scheme were used
since it also has a greater speciation of PFTs than UKESM1.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <label>2.3.2</label><title>SLW values</title>
      <p id="d1e2358">One source of uncertainty in the EF<inline-formula><mml:math id="M146" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M147" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> EF<inline-formula><mml:math id="M148" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> conversion is the
PFT-specific values of SLW. MEGAN v2.1 does not use SLW (personal
communication with Alex Guenther, 6 April 2022), and we consider
three other datasets of SLW from CLM5, ORCHIDEE and UKESM1.</p>
      <p id="d1e2386">CLM5 uses specific leaf area (SLA; m<inline-formula><mml:math id="M149" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> gC<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) at the canopy top for photosynthesis calculations (Ali et al., 2016), and we consider the
inverse for SLW and apply a scaling of 2 to convert the mass of carbon to dry leaf mass.</p>
      <p id="d1e2410">The ORCHIDEE BVOC scheme also reports SLA (m<inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">leaf</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> gC<inline-formula><mml:math id="M152" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) (SLW; gC m<inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">leaf</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>) (Table S1 in the Supplement). Similar to the CLM5 SLW, we apply a scaling of 2 to convert mass of carbon to dry leaf mass. For
UKESM1, we use the reported values of SLW (termed leaf mass area or lma; g<inline-formula><mml:math id="M154" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math id="M155" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for the 13 PFTs.</p>
      <p id="d1e2473">Figure 1 shows the three SLW datasets with the CLM5 and ORCHIDEE values
lumped into UKESM1 PFTs. We find reasonable agreement, particularly between
UKESM1 and CLM5 for the major emitting species.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e2479">SLW values for UKESM1 PFTs from the UKESM1, ORCHIDEE and CLM5
datasets. ORCHIDEE does not consider shrubs to be separate PFTs, so there are no corresponding SLW values.</p></caption>
            <?xmltex \igopts{width=412.564961pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/3083/2023/gmd-16-3083-2023-f01.png"/>

          </fig>

      <p id="d1e2488">To explore the uncertainty arising from the variation in SLW, we calculate
EF<inline-formula><mml:math id="M156" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> using the UKESM1, CLM5 and ORCHIDEE SLW datasets. When
calculating the EF<inline-formula><mml:math id="M157" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> using the CLM5 and ORCHIDEE SLW values, we first
calculate the EF<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> for the scheme-specific PFTs (i.e. for the<?pagebreak page3088?> 15 PFTs in MEGAN) and then perform the lumping (Table 3). By contrast, when
calculating the EF<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> using the SLW which correspond to UKESM's 13 PFTs, the EF<inline-formula><mml:math id="M160" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> from MEGAN v2.1 must be lumped first before being
converted to EF<inline-formula><mml:math id="M161" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS3">
  <label>2.3.3</label><title>Temperature scaling</title>
      <p id="d1e2555">It is also necessary to consider the fact that the “standard conditions”
differ between MEGAN v2.1, ORCHIDEE and iBVOC.</p>
      <p id="d1e2558">The temperature factor in MEGAN v2.1, <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mi>T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, uses
a parameterisation which considers the standard conditions for leaf
temperature (<inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">297</mml:mn></mml:mrow></mml:math></inline-formula> K) and the average leaf temperature of the past
24 (<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">24</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and 240 (<inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">240</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) h (Eqs. 8–10; Guenther et al., 2012).
ORCHIDEE and UKESM1 assume that leaf and air temperature are the same and
use standard conditions of 303.15 K (30 <inline-formula><mml:math id="M166" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). Therefore, it is
necessary to scale the IEF<inline-formula><mml:math id="M167" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> in Eqs. (1) and (2) to account for
difference in standard temperature.</p>
      <p id="d1e2628">For isoprene emissions, iBVOC applies a temperature dependence (Eq. 3)
(Pacifico et al., 2011) as
              <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M168" display="block"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">isop</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mo>[</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">0.1</mml:mn><mml:mfenced close=")" open="("><mml:mrow><mml:mi>T</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:msup><mml:mo>;</mml:mo><mml:mn mathvariant="normal">2.3</mml:mn><mml:mo>]</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2669">In this work, we apply a temperature scaling <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">isop</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 4) using this
temperature dependence to account for the difference in standard conditions.
              <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M170" display="block"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">isop</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">isop</mml:mi><mml:mi mathvariant="normal">@</mml:mi><mml:mn mathvariant="normal">303.15</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">isop</mml:mi><mml:mi mathvariant="normal">@</mml:mi><mml:mn mathvariant="normal">297</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">0.1</mml:mn><mml:mo>(</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">0.1</mml:mn><mml:mo>(</mml:mo><mml:mn mathvariant="normal">297</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.85</mml:mn></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2778">iBVOC also applies a temperature dependence to terpene emissions
(<inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">terp</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) in the 13-PFT set-up for all PFTs, except for broadleaf deciduous trees, whose parameterisation we describe later (Pacifico et al., 2011) (Eq. 5).
              <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M172" display="block"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">terp</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">0.09</mml:mn><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>T</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:msup></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2819">Following the same approach as for isoprene emissions, we apply a scaling
factor <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">terp</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 6).
              <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M174" display="block"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">terp</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">terp</mml:mi><mml:mi mathvariant="normal">@</mml:mi><mml:mn mathvariant="normal">303.15</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">terp</mml:mi><mml:mi mathvariant="normal">@</mml:mi><mml:mn mathvariant="normal">297</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">0.09</mml:mn><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">303.15</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">0.09</mml:mn><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">297</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">303.15</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.74</mml:mn></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2923">In iBVOC, terpene emissions for broadleaf deciduous trees are assumed to have a PAR-independent component and a PAR-dependent component (terpene emissions for all other PFTs are assumed to be entirely PAR-independent). In a similar
approach to MEGAN v2.1 (Sect. 2.2; Guenther et al., 2012), the
PAR-independent component uses the terpene temperature dependence
(<inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">terp</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; Eq. 5), while the PAR-dependent component uses the isoprene temperature dependence (<inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">isop</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; Eq. 3) along with an additional term
representing photosynthesis. These components have a <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mn mathvariant="normal">50</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> weighting, and we therefore use an average of <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>isop_scale</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>terp_scale</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for the
temperature scaling, <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>terp_BrDe_scale</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, for this PFT (Eq. 7).
              <disp-formula id="Ch1.E7" content-type="numbered"><label>7</label><mml:math id="M181" display="block"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">terp</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">BrDe</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn><mml:msub><mml:mi>T</mml:mi><mml:mrow><mml:mi mathvariant="normal">terp</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn><mml:msub><mml:mi>T</mml:mi><mml:mtext>isop_scale</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.79</mml:mn></mml:mrow></mml:math></disp-formula></p>
      <?pagebreak page3089?><p id="d1e3040">It is important to note that MEGAN v2.1 uses a more complicated temperature
dependence which considers average leaf temperatures over the previous 24
and 240 h. MEGAN v2.1 and iBVOC also differ in their simulation of
CO<inline-formula><mml:math id="M182" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> inhibition (which is PFT-specific for iBVOC but not in MEGAN) and
photosynthesis. Both models simulate reductions in isoprene emissions with
CO<inline-formula><mml:math id="M183" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. The CO<inline-formula><mml:math id="M184" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> inhibition parameterisation in iBVOC follows that of
Arneth et al. (2007), considering the ratio of the plant's internal CO<inline-formula><mml:math id="M185" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
concentration to a PFT-specific reference value, while MEGAN uses the
parameterisation of Heald et al. (2007), which is not PFT-specific. Cao et al. (2021) found the CO<inline-formula><mml:math id="M186" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> inhibition in UKESM (using iBVOC) to be almost
twice that of CESM (using MEGAN) when considering isoprene emissions in the
late 21st century. MEGAN parameterises the effect of photosynthesis
with a scaling term composed of a LDF and LIDF (1 <inline-formula><mml:math id="M187" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> LDF), with the former a function of the photosynthetic photon flux density averaged over a 24 h period for both
shaded and unshaded leaves (Sect. 2.2, Guenther et al., 2012). By
contrast, iBVOC describes the impact of photosynthesis from the perspective
of electron transport, following Arneth et al. (2007) as described in Sect. 2.2 of Pacifico et al. (2011). MEGAN v2.1 also features a parameterisation to
account for the influence of leaf age on emissions, while iBVOC does not. Accounting for these parameterisation differences is very complicated and
has not been done in this conversion.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS4">
  <label>2.3.4</label><title>EF for terpene emissions</title>
      <p id="d1e3104">For terpenes a further factor in the conversion must be considered. Unlike
isoprene, where the tracer in UKCA corresponds directly to the molecule isoprene, the one or two terpene tracers in UKCA actually represent a wide
range of monoterpene species.</p>
      <p id="d1e3107">The Strat-Trop (ST) chemistry scheme (Archibald et al., 2020), the standard
in UKESM1, considers a single tracer, Monoterp (MT), whose initial oxidation
reactions with OH, O<inline-formula><mml:math id="M188" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and NO<inline-formula><mml:math id="M189" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> have the rate constants of the most
widely emitted monoterpene, <inline-formula><mml:math id="M190" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene. The alternative mechanism,
CRI-Strat 2 (CS2) (Weber et al., 2021), considers separate <inline-formula><mml:math id="M191" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M192" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene tracers which have different rate constants. When using
the ST mechanism, terpene emissions calculated by iBVOC are mapped directly
to MT emissions considered by UKCA, while in CS2, terpene emissions are split into a <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> ratio for <inline-formula><mml:math id="M194" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M195" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, representing the
approximate global emission ratio of these species (Sindelarova et al., 2014).</p>
      <p id="d1e3176">MEGAN v2.1 provides separate PFT-specific EF<inline-formula><mml:math id="M196" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> for <inline-formula><mml:math id="M197" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene,
<inline-formula><mml:math id="M198" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, myrcene, sabinene, limonene, 3-carene and t-<inline-formula><mml:math id="M199" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-ocimene and for an “other monoterpenes” category. For the major emitting
PFTs, the EF<inline-formula><mml:math id="M200" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> of <inline-formula><mml:math id="M201" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene are <inline-formula><mml:math id="M202" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 60 % higher than those of <inline-formula><mml:math id="M203" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and 2 to 3 times higher than those of the other specific monoterpenes (e.g. myrcene) and the “other monoterpenes” category. Since the emissions of MT in ST and <inline-formula><mml:math id="M204" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M205" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene in CS2 represent all monoterpenes, a choice must be made regarding
how to combine these EF<inline-formula><mml:math id="M206" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula>.</p>
      <p id="d1e3263">In this analysis, we consider three options – using only the <inline-formula><mml:math id="M207" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene EF<inline-formula><mml:math id="M208" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula>, using the <inline-formula><mml:math id="M209" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M210" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene
EF<inline-formula><mml:math id="M211" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> in a <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> weighted mean (representing the ratio of these species
in Sindelarova et al., 2014) or using the <inline-formula><mml:math id="M213" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M214" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene
and “other monoterpenes” EF<inline-formula><mml:math id="M215" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> in a mean weighted by the total
emission estimates in Sindelarova et al. (2014), namely <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:mn mathvariant="normal">32</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">16.7</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">46.3</mml:mn></mml:mrow></mml:math></inline-formula>.
Sindelarova et al. (2014) do not speciate monoterpenes beyond <inline-formula><mml:math id="M217" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M218" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and total monoterpenes, so inclusion of the EF<inline-formula><mml:math id="M219" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> of the other species like myrcene was not considered here.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS5">
  <label>2.3.5</label><?xmltex \opttitle{EF${}_{\mathrm{mass}}$ values}?><title>EF<inline-formula><mml:math id="M220" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values</title>
      <p id="d1e3399">Figure 2 shows the PFT-specific EF<inline-formula><mml:math id="M221" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values for isoprene
(IEF<inline-formula><mml:math id="M222" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>) and terpene (TEF<inline-formula><mml:math id="M223" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>) calculated using the SLW datasets
and, in the case of TEF<inline-formula><mml:math id="M224" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>, the three different combinations of
the monoterpene EF from MEGAN v2.1. We also show the current IEF<inline-formula><mml:math id="M225" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and TEF<inline-formula><mml:math id="M226" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> used by UKESM1.</p>
      <p id="d1e3457">Unsurprisingly, the new approach yields substantially lower EF<inline-formula><mml:math id="M227" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>
values for C<inline-formula><mml:math id="M228" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass, crops and pasture compared to the UKESM1 default. The
IEF<inline-formula><mml:math id="M229" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of needleleaf deciduous trees decreases to almost zero (its
IEF<inline-formula><mml:math id="M230" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> has the joint lowest value in MEGAN v2.1), while the IEF<inline-formula><mml:math id="M231" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and TEF<inline-formula><mml:math id="M232" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of all broadleaf trees increase.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e3517">Default and new <bold>(a)</bold> IEF<inline-formula><mml:math id="M233" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and <bold>(b)</bold> TEF<inline-formula><mml:math id="M234" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> for UKESM1
PFTs.</p></caption>
            <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/3083/2023/gmd-16-3083-2023-f02.png"/>

          </fig>

      <p id="d1e3551">The variation in EF<inline-formula><mml:math id="M235" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> from uncertainty in SLW is particularly notable
for the broadleaf deciduous and broadleaf evergreen temperate PFTs but
smaller for the broadleaf evergreen tropical PFT, the single largest emitter
of isoprene. The impact of this uncertainty on isoprene emissions is
explored by comparing emissions from UKESM1 simulations using the
IEF<inline-formula><mml:math id="M236" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> calculated using UKESM1 SLW and CLM5 SLW (Table 4; Evaluation).
This was not done for terpene emissions since the choice of EF<inline-formula><mml:math id="M237" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> is
likely to be a much larger source of uncertainty.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><?xmltex \currentcnt{4}?><label>Table 4</label><caption><p id="d1e3584">Evaluation simulations with UKESM1. Reported are the average for 1-year simulations and the average and range of annual means (in
parentheses) for multi-year simulations. The UKESM1.0 simulations used UM
version 12.0.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="2.8cm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="1.8cm"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="1.8cm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Simulation</oasis:entry>
         <oasis:entry colname="col2">Run specifications</oasis:entry>
         <oasis:entry colname="col3">IEF<inline-formula><mml:math id="M238" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">TEF<inline-formula><mml:math id="M239" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Global<?xmltex \hack{\hfill\break}?>isoprene <?xmltex \hack{\hfill\break}?>emissions <?xmltex \hack{\hfill\break}?>/ Tg yr<inline-formula><mml:math id="M240" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Global<?xmltex \hack{\hfill\break}?>terpene <?xmltex \hack{\hfill\break}?>emissions <?xmltex \hack{\hfill\break}?>/ Tg yr<inline-formula><mml:math id="M241" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col6" align="left">Nudged PD simulations </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Control_1yr_PD</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013<?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">527</oasis:entry>
         <oasis:entry colname="col6">138</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">No_C<inline-formula><mml:math id="M242" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>_emiss_PD <?xmltex \hack{\hfill\break}?></oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default w/ all C<inline-formula><mml:math id="M243" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> IEF<inline-formula><mml:math id="M244" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>0</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default w/ all C<inline-formula><mml:math id="M245" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> TEF<inline-formula><mml:math id="M246" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>0</oasis:entry>
         <oasis:entry colname="col5">312</oasis:entry>
         <oasis:entry colname="col6">113</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">IEF_SLW_UKESM_PD</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: UKESM1</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">457</oasis:entry>
         <oasis:entry colname="col6">138</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">IEF_SLW_CLM5_PD</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">491</oasis:entry>
         <oasis:entry colname="col6">138</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">IEF_SLW_UKESM_PD_ CESM_LULC</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>CESM2 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: UKESM1</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">380</oasis:entry>
         <oasis:entry colname="col6">97</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">IEF_SLW_CLM5_PD_ CESM_LULC</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>CESM2 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">420</oasis:entry>
         <oasis:entry colname="col6">97</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">TEF_AP_PD</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP only</oasis:entry>
         <oasis:entry colname="col5">488</oasis:entry>
         <oasis:entry colname="col6">177</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">TEF_AP_BP_PD</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/2:1</oasis:entry>
         <oasis:entry colname="col5">489</oasis:entry>
         <oasis:entry colname="col6">130</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">TEF_all_PD</oasis:entry>
         <oasis:entry colname="col2">Nov 2012–Oct 2013 <?xmltex \hack{\hfill\break}?>UKESM1 LULC</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/other</oasis:entry>
         <oasis:entry colname="col5">491</oasis:entry>
         <oasis:entry colname="col6">88</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Control_3yr_PD</oasis:entry>
         <oasis:entry colname="col2">2005–2007</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">545 <?xmltex \hack{\hfill\break}?>(539–551)</oasis:entry>
         <oasis:entry colname="col6">140 <?xmltex \hack{\hfill\break}?>(138–141)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Proposed_EF_3yr_PD</oasis:entry>
         <oasis:entry colname="col2">2005-2007</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/other</oasis:entry>
         <oasis:entry colname="col5">498 <?xmltex \hack{\hfill\break}?>(493–505)</oasis:entry>
         <oasis:entry colname="col6">130 <?xmltex \hack{\hfill\break}?>(127–131)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col6" align="left">Free-running simulations </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Base PI <?xmltex \hack{\hfill\break}?></oasis:entry>
         <oasis:entry colname="col2">3-year PI UKESM1<?xmltex \hack{\hfill\break}?>LULC, SSTs and emissions</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">744 <?xmltex \hack{\hfill\break}?>(742–747)</oasis:entry>
         <oasis:entry colname="col6">140 <?xmltex \hack{\hfill\break}?>(139–141)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Updated EF PI</oasis:entry>
         <oasis:entry colname="col2">3-year PI UKESM1<?xmltex \hack{\hfill\break}?>LULC, SSTs and emissions</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/other</oasis:entry>
         <oasis:entry colname="col5">645 <?xmltex \hack{\hfill\break}?>(637–649)</oasis:entry>
         <oasis:entry colname="col6">125 <?xmltex \hack{\hfill\break}?>(125–125)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Base 2050 SSP3-7.0</oasis:entry>
         <oasis:entry colname="col2">3-year 2050 SSP3-7.0 <?xmltex \hack{\hfill\break}?>UKESM1 LULC, SSTs and emissions</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">603 <?xmltex \hack{\hfill\break}?>(591–612)</oasis:entry>
         <oasis:entry colname="col6">178 <?xmltex \hack{\hfill\break}?>(177–179)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Updated EF 2050 <?xmltex \hack{\hfill\break}?>SSP3-7.0</oasis:entry>
         <oasis:entry colname="col2">3-year 2050 SSP3-7.0 <?xmltex \hack{\hfill\break}?>UKESM1 LULC, SSTs and emissions</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/other</oasis:entry>
         <oasis:entry colname="col5">556 <?xmltex \hack{\hfill\break}?>(553–560)</oasis:entry>
         <oasis:entry colname="col6">163 <?xmltex \hack{\hfill\break}?>(162–164)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{4}?></table-wrap>

</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Evaluation simulations</title>
      <p id="d1e4176">To assess the impact of changing the EF<inline-formula><mml:math id="M247" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values, we performed a range of simulations in UKESM1 with varying IEF<inline-formula><mml:math id="M248" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and TEF<inline-formula><mml:math id="M249" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values
and two accompanying simulations in CESM2 for comparison purposes. We also evaluated the resulting simulated isoprene columns against satellite
observations from the Cross-track Infrared Sounder (CrIS) and ground
observations. Tables 4 and 5 summarise the simulations performed for this
evaluation.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5" specific-use="star"><?xmltex \currentcnt{5}?><label>Table 5</label><caption><p id="d1e4209">Evaluation atmosphere-only simulations with UKESM1 and CESM
performed to investigate responses to LULC change with different EFs. The UKESM1.0 simulations used UM version 12.0. All the simulations used SSTs from SSP3-7.0 at 2050 and WMGHGs and anthropogenic and biomass burning emissions
from 2010.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Simulation</oasis:entry>
         <oasis:entry colname="col2">Model</oasis:entry>
         <oasis:entry colname="col3">IEF</oasis:entry>
         <oasis:entry colname="col4">TEF</oasis:entry>
         <oasis:entry colname="col5">Land use</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">UKESM_default_2010</oasis:entry>
         <oasis:entry colname="col2">UKESM</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">2010</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">UKESM_default_2050</oasis:entry>
         <oasis:entry colname="col2">UKESM</oasis:entry>
         <oasis:entry colname="col3">UKESM1 default</oasis:entry>
         <oasis:entry colname="col4">UKESM1 default</oasis:entry>
         <oasis:entry colname="col5">2050 Maxforest</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">UKESM_update_2010</oasis:entry>
         <oasis:entry colname="col2">UKESM</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/ 2:1</oasis:entry>
         <oasis:entry colname="col5">2010</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">UKESM_update _2050</oasis:entry>
         <oasis:entry colname="col2">UKESM</oasis:entry>
         <oasis:entry colname="col3">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5</oasis:entry>
         <oasis:entry colname="col4">Updated <?xmltex \hack{\hfill\break}?>SLW: CLM5 <?xmltex \hack{\hfill\break}?>EF: AP/BP/ 2:1</oasis:entry>
         <oasis:entry colname="col5">2050 Maxforest</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">CESM_2010</oasis:entry>
         <oasis:entry colname="col2">CESM</oasis:entry>
         <oasis:entry colname="col3">CESM default <?xmltex \hack{\hfill\break}?>(MEGAN v2.1)</oasis:entry>
         <oasis:entry colname="col4">CESM default <?xmltex \hack{\hfill\break}?>(MEGAN v2.1)</oasis:entry>
         <oasis:entry colname="col5">2010</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CESM_2050</oasis:entry>
         <oasis:entry colname="col2">CESM</oasis:entry>
         <oasis:entry colname="col3">CESM default <?xmltex \hack{\hfill\break}?>(MEGAN v2.1)</oasis:entry>
         <oasis:entry colname="col4">CESM default <?xmltex \hack{\hfill\break}?>(MEGAN v2.1)</oasis:entry>
         <oasis:entry colname="col5">2050 Maxforest</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{5}?></table-wrap>

<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>UKESM1 simulations</title>
      <p id="d1e4388">All UKESM1 simulations used the atmosphere-only configuration of UKESM1 run
at a horizontal resolution of 1.25<inline-formula><mml:math id="M250" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M251" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.875<inline-formula><mml:math id="M252" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
with 85 vertical levels up to 85 km (Walters et al., 2019) and the GLOMAP-mode aerosol scheme, which simulates sulfate, sea salt, BC and
organic matter but does not simulate currently nitrate aerosol (Mulcahy et al., 2020). Mineral dust is simulated using the bin scheme of Woodward (2001). UKESM1 has the capability to perform simulations using specified
dynamics, also called “nudging”, where certain offline meteorological
fields from the ERA-Interim reanalysis (temperature and horizontal winds) are input (Dee et al., 2011) and free running with online computed
meteorology.</p>
      <p id="d1e4416">Our evaluation has three sections. Firstly, we perform PD simulations nudged to atmospheric reanalyses to compare the model
simulations with different EF<inline-formula><mml:math id="M253" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values to observational data (Table 4). Secondly, we perform free-running<?pagebreak page3090?> simulations using conditions from the
pre-industrial (PI) and Shared Socioeconomic Pathway SSP3-7.0, which
represents a “regional rivalry” scenario at 2050 (O'Neill et al., 2016) to assess the effect these different EF<inline-formula><mml:math id="M254" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values would have in these
two periods (Table 4). Finally, we perform free-running simulations using PD
conditions but with LULC from either the PD or specific future LULC scenario
featuring wide-scale reforestation/afforestation to assess the impact these EF<inline-formula><mml:math id="M255" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values would have on the response of mass tree planting (Table 5). Runs used
the CS2 chemical mechanism (Jenkin et al., 2019; Weber et al., 2021),
version 12.0 of the Unified Model (UM) and vn5. of JULES.</p>
      <p id="d1e4446">Nine 1-year PD simulations were performed for November 2012–October 2013, as this period covers 4 months for which there exist satellite CrIS observations of global isoprene columns (January, April, July and October 2013; Wells et al., 2020). Six runs were performed to evaluate plausible
EF<inline-formula><mml:math id="M256" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> approaches by comparison of the resulting total global emissions
to estimates from other sources and, for isoprene, comparison of simulated
column values against measured column values. No_C4_emiss_PD was run to isolate the fraction of
emissions from C<inline-formula><mml:math id="M257" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs (see Sect. 4). Finally, two 3-year nudged PD
simulations were run with UKESM1 default EF<inline-formula><mml:math id="M258" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and the proposed new EF<inline-formula><mml:math id="M259" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> to ensure the trends established in the 1-year runs were not simply caused by the prevailing meteorology and persisted over a longer
period. We also performed two UKESM1 simulations using LULC taken from a PD
CESM2 simulation (with PFTs lumped as described in Sect. 2) to assess the
influence of the underlying simulated LULC on emissions. These simulations,
IEF_SLW_UKESM_PD_CESM_LULC and IEF_SLW_CLM5_PD_CESM_LULC (Table 4),
used the same IEF values as IEF_SLW_UKESM_PD and IEF_SLW_CLM5_PD respectively.</p>
      <p id="d1e4485">Nudging of temperature and horizontal wind was used to prevent diverging
meteorology affecting BVOC emissions and to replicate as closely as possible the atmospheric conditions experienced when the observations were recorded. Thus, nudging, along with the use of observed sea surface
temperature (SST) fields, means that, as far as possible, the changes in EF<inline-formula><mml:math id="M260" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> will be the only drivers of emission changes and allows for a
more faithful comparison to observational data. Nudging only occurred
above <inline-formula><mml:math id="M261" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1200 m in altitude, and thus most of the planetary boundary
layer was not nudged.</p>
      <p id="d1e4505">The 1-year PD nudged runs used time series of anthropogenic and biomass burning emissions to keep the simulated conditions close to those when the observations were recorded. The 3-year nudged PD runs used 2014
time-slice anthropogenic and biomass burning emissions. All these simulations used prescribed LULC from a UKESM1 historical ensemble member performed for
CMIP6 (Sellar et al., 2020).</p>
      <p id="d1e4508">The four free-running simulations performed to investigate how the EF<inline-formula><mml:math id="M262" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> changes would affect simulated emissions in the PI and in 2050
under conditions used prescribed LULC from the UKESM1 piControl and SSP3-7.0
runs performed for CMIP6 (Sellar et al., 2019) and time-slice emissions from 1850 and SSP3-7.0 2050 respectively (Table 4).</p>
      <?pagebreak page3092?><p id="d1e4520">We also explored how the change to EF<inline-formula><mml:math id="M263" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> would affect the response to
a specific LULC change with a further set of simulations, which used two
time periods from a specific land use scenario featuring wide-scale afforestation and reforestation (“MaxForest”). The Maxforest scenario
features a very high degree of reforestation and afforestation over the
course of the 21st century and was developed to assess the impact of such LULC with regards to carbon sequestration, among other factors. The
scenario gradually expands existing forested regions with suitable tree
species and also avoids encroachment on cropland, pastures and urban
regions. It can thus be considered a scenario representing a near-maximum plausible level of reforestation/afforestation. The Maxforest scenario was originally developed for CLM5 (Lawrence et al., 2019), and we adapted it for UKESM1 using
the same lumping of PFTs as discussed in Sect. 2.3.1. We performed
simulations with the default and new EF<inline-formula><mml:math id="M264" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values with LULC from the
start of the MaxForest scenario at 2010 (no increase in tree cover) and at
2050, when extensive reforestation was well underway. All these simulations used PD anthropogenic and biomass burning emissions and GHG concentrations,
but BVOC emissions were allowed to respond to LULC change. We compare the
change in isoprene and terpene emissions between 2010 and 2050 Maxforest
land use when the default EF<inline-formula><mml:math id="M265" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values were used to when the new
EF<inline-formula><mml:math id="M266" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values were used. We also performed the same experiments in
CESM2 (Sect. 3.2) and compare the change in BVOC emissions between 2010
and 2050 Maxforest land use to the UKESM simulations.</p>
      <p id="d1e4559">In all the runs, CO<inline-formula><mml:math id="M267" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was not emitted but was set to a constant field appropriate for the PI, PD and 2050 under SSP3-7.0 conditions, while the other
well-mixed greenhouse gases (WMGHGs) CH<inline-formula><mml:math id="M268" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, CFCs and N<inline-formula><mml:math id="M269" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O were prescribed with constant lower-boundary conditions (Archibald et al., 2020) appropriate for the PI, PD and 2050 under SSP3-7.0 conditions.</p>
      <p id="d1e4589">Fields for SSTs, sea ice (SI) and ocean biogeochemistry (DMS – dimethyl sulfide – and chlorophyll) were prescribed for all the runs. The nudged PD runs used observed SSTs and SI and ocean biochemistry from a UKESM1 historical ensemble member. The free-running PI runs used a 30-year
mean from the UKESM1 piControl for SSTs, SI and ocean biogeochemistry. The
SSP3-7.0 2050 runs used 2050 ocean biogeochemistry and 2045–2055 mean SSTs
and SI, all taken from one of the UKESM1 SSP3-7.0 ensemble members.</p>
      <p id="d1e4592">The free-running Maxforest simulations (Table 5) used 2050 ocean biogeochemistry, 2045–2055 mean SSTs and SI and PD anthropogenic emissions
and prescribed concentrations of WMGHGs. The same SSTs and WMGHG
concentrations were applied to ensure differences in BVOC emissions were due
to LULC only.</p>
      <p id="d1e4596">All UKESM1 runs used oceanic emissions of CO, C<inline-formula><mml:math id="M270" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M271" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, C<inline-formula><mml:math id="M272" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M273" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:math></inline-formula>, C<inline-formula><mml:math id="M274" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M275" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M276" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M277" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:math></inline-formula> from the POET 1990 dataset (Olivier et al., 2003), and all biogenic emissions except isoprene and
monoterpenes were based on 2001–2010 climatologies from the MEGAN-MACC (Monitoring Atmospheric Composition and Climate)
dataset (Sindelarova et al., 2014) calculated by the MEGAN v2.1 model (Guenther et al., 2012) under the MACC project. Emissions of isoprene and monoterpenes (split into a <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> ratio between <inline-formula><mml:math id="M279" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M280" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene) were calculated
interactively using iBVOC. Anthropogenic and biomass burning emission data for CMIP6 are from the Community Emissions Data System (CEDS), as described
by Hoesly et al. (2018).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>CESM simulations</title>
      <p id="d1e4707">The CESM simulations used version 2.2.0 (Danabasoglu et al., 2020) at a
0.9<inline-formula><mml:math id="M281" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M282" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.25<inline-formula><mml:math id="M283" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> horizontal resolution. For the atmospheric
component, we employ CAM-chem version 6 (hereinafter CAM6-chem), with a full
tropospheric O<inline-formula><mml:math id="M284" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>–NO<inline-formula><mml:math id="M285" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>–CO–VOC–aerosol chemistry based on an
updated tropospheric chemistry mechanism (MOZART-TS1)
(Emmons
et al., 2020) with the Modal Aerosol Model with 4 modes (MAM4) (Liu et
al., 2016). CAM6-chem has 32 vertical layers and a model top of
<inline-formula><mml:math id="M286" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 45 km and is coupled to CLM5,<?pagebreak page3093?> which provides BVOCs with the MEGAN v2.1 scheme and handles dry deposition. Our simulations used specified
sea surface temperatures and thermodynamic sea ice.</p>
      <p id="d1e4761">For the two CESM simulations, anthropogenic and biomass burning emissions of
reactive gases and aerosols were fixed to a 2010 climatology (2006–2014
average) using data from Hoesly et al. (2018). WMGHGs were incorporated as
fixed lateral boundary conditions rather than as emissions from the surface
and were also fixed to 2010 values (2006–2014 average) using standard
concentration data from CMIP6 (Meinshausen et al., 2017).</p>
      <p id="d1e4764">For LULC, we performed the same free-running PD and 2050 LULC simulations as
in UKESM1 (Table 5) to allow comparison of the BVOC emission responses to
the LULC change in UKESM1 and CESM. As with UKESM1, the CESM simulations
were atmosphere-only and used PD anthropogenic emissions and prescribed
WMGHG concentrations and 2045–2055 mean SSTs, with the only difference between the simulations being the LULC.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Observational data </title>
      <p id="d1e4775">Monthly mean isoprene columns derived using the space-borne CrIS technique
(Wells et al., 2020) were used as the principal method of evaluation since
it all allows the regional changes to be readily assessed. The CrIS is a
longwave infrared Fourier transform spectrometer on board a satellite which can measure two isoprene IR absorption features. The absorption data
collected by the spectrometer are then combined with an artificial
neural network to calculate isoprene columns.</p>
      <p id="d1e4778">Surface isoprene emission measurements from regions with C<inline-formula><mml:math id="M287" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass were also
used to examine the impact of substantial reduction in C<inline-formula><mml:math id="M288" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass
IEF<inline-formula><mml:math id="M289" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>. In lieu of observations from C<inline-formula><mml:math id="M290" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>-only regions (which are very
sparse given the understanding that C<inline-formula><mml:math id="M291" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses are weak isoprene emitters),
we use observations from savanna, which tends to comprise grasses, woody
shrubs and a range of trees, including strong isoprene and monoterpene
emitters (e.g. Table 3 of Otter et al., 2002), in varying proportions. We select savanna observations from sites specifically noted as being without
dominant isoprene emitters (Central Africa Republic – Klinger et al., 1998;
Nylsvley, South Africa – Guenther et al., 1996, and Otter et al., 2002). We note that these sites were likely to have grass species with very low  isoprene emissions, below the instrument detection limits (e.g. Harley et al., 2003). Therefore, our compiled observations represent an upper bound
for isoprene emissions from C<inline-formula><mml:math id="M292" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass.</p>
      <p id="d1e4836">We also used monoterpene emission data measured at the SMEAR II site in
Hyytiälä (<uri>https://smear.avaa.csc.fi</uri>, last access: 19 March
2023) to evaluate the change in terpene emissions.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Results</title>
      <p id="d1e4851">The impact of changing EF<inline-formula><mml:math id="M293" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values is assessed in terms of total
isoprene and monoterpene emissions and, in the case of isoprene, against
global isoprene column values. We also discuss the change in the contribution to total emissions from the different PFTs and the impact of the EF<inline-formula><mml:math id="M294" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>
changes on simulated emissions in the PI, at 2050 under SSP3-7.0, and the
reforestation/afforestation LULC scenario.</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Total global emissions</title>
      <p id="d1e4879">Table 4 presents the global isoprene and terpenes emissions in our
simulations. For isoprene, all nudged PD simulations, except
No_C<inline-formula><mml:math id="M295" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>_emiss_PD, yield total
emissions within the range of previous estimates. Simulations using
IEF<inline-formula><mml:math id="M296" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> from UKESM1 SLW (“IEF_SLW_UKESM_PD”) and CLM5 SLW (“IEF_SLW_CLM5_PD”) yield emissions 13 % and
7 % lower than the UKESM1 control simulation (“Control_1yr_PD”) respectively.</p>
      <p id="d1e4900">When UKESM1 LULC was replaced with CESM2 LULC, isoprene emissions are 380 Tg yr<inline-formula><mml:math id="M297" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (IEF_SLW_UKESM_PD_CESM_LULC) and 420 Tg yr<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(IEF_SLW_CLM5_PD EF). These
values are lower than the 457 and 490 Tg yr<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> simulated
using the same IEF values and UKESM LULC, yet they are still well within the
range of simulated emissions (310–680 Tg yr<inline-formula><mml:math id="M300" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) of Fig. 1 of Messina et
al. (2016). This highlights the influence of uncertainty in LULC on BVOC
emissions but, as iBVOC is chiefly for use with UKESM1, we will focus on the
simulations using UKESM1 LULC.</p>
      <p id="d1e4951">For terpenes, when the TEF<inline-formula><mml:math id="M301" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> is based solely on <inline-formula><mml:math id="M302" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene
(TEF_AP_PD), total emissions (177 Tg yr<inline-formula><mml:math id="M303" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) are higher than previously published results (Messina et al.,
2016) and when the TEF<inline-formula><mml:math id="M304" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> is derived from the weighted average of
ratio of <inline-formula><mml:math id="M305" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M306" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and other monoterpenes”
(TEF_all_PD), total emissions (88 Tg yr<inline-formula><mml:math id="M307" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) are at the lower end of estimates. However, when taking a <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>
ratio of <inline-formula><mml:math id="M309" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M310" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene TEF<inline-formula><mml:math id="M311" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula>
(TEF_AP_BP_PD), the resulting
emissions (130 Tg yr<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) are more in line with other estimates.</p>
      <p id="d1e5066">The clearest indication of the significant contribution C<inline-formula><mml:math id="M313" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs make to BVOC
emissions in the current UKESM1 set-up comes from the comparison of Control_1yr_PD and No_C<inline-formula><mml:math id="M314" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>_emiss_PD, where the EF<inline-formula><mml:math id="M315" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of all C<inline-formula><mml:math id="M316" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs is zero, simulations. This reveals that C<inline-formula><mml:math id="M317" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs contribute about 40 %
(18 %) to total isoprene (terpene) emissions in the current UKESM1 set-up, far higher than the 1 % (0.3 %) estimated by Guenther et al. (2012),
9 % for isoprene from the original 5-PFT version of iBVOC (Pacifico et
al., 2011) and 1 %–2 % for isoprene estimated by Pfister et al. (2008). As
previously discussed, this substantial contribution from C<inline-formula><mml:math id="M318" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses is also
in stark contrast to other studies, which highlight very low emissions of
isoprene from C<inline-formula><mml:math id="M319" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses (e.g. Loreto and Fineschi, 2015). Overall, this suggests that while the current<?pagebreak page3094?> UKESM1 approach may produce a reasonable
value for total isoprene and terpene emissions, these are derived using
unrealistic EF for C<inline-formula><mml:math id="M320" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses.</p>
      <p id="d1e5143">With the updated EF<inline-formula><mml:math id="M321" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>, the C<inline-formula><mml:math id="M322" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass PFT contributes 1 %–3 % of total isoprene emissions (based on the chosen SLW) and 0.2 %–0.7 % of total terpene
emissions (based on the choice of EF<inline-formula><mml:math id="M323" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula>), bringing UKESM1 into line with other estimates.</p>
      <p id="d1e5173">The decreases in C<inline-formula><mml:math id="M324" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFT EF<inline-formula><mml:math id="M325" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and increases in the EF<inline-formula><mml:math id="M326" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of the
broadleaf evergreen tropical tree PFT lead to the contribution to total isoprene emissions from broadleaf evergreen tropical trees increasing from
45 % to 75 % (50 % to 80 % for terpenes). This contribution is
greater than the 46 % estimated by MEGAN v2.1 (Guenther et al., 2012).
However, the area of this PFT in UKESM1 is 67 % greater than CLM4 (26.0
vs. <inline-formula><mml:math id="M327" display="inline"><mml:mrow><mml:mn mathvariant="normal">15.6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>). (While this difference in area may seem
large, the total areas of tropical trees in UKESM and CLM4 are much more
similar if the area of CLM4's deciduous evergreen tropical tree PFT, for
which there is no direct analogue in UKESM, is included.) On an emissions per unit area basis for the broadleaf evergreen tropical PFT, isoprene
emissions in UKESM1 are within 5 % of that from Guenther et al. (2012), while terpene emissions are <inline-formula><mml:math id="M329" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 25 % lower. This separately
highlights the important issue of uncertainty in land use and land cover and
the effect that it can have on model–model comparisons (e.g. in CMIP6) and model–observation comparisons.</p>
      <p id="d1e5235">Spatially, the new IEF<inline-formula><mml:math id="M330" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> led to isoprene emission increases across
Amazonia (albeit with a small reduction around Manaus) and the Congo and decreases north and south of the African rainforest, where the simulated C<inline-formula><mml:math id="M331" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass PFT dominates (Fig. 3a). Terpene emissions increase over the tropics
due to increases in the TEF<inline-formula><mml:math id="M332" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of tropical evergreen broadleaf trees,
while they decrease at mid and high latitudes (Fig. 3b) from reductions in the TEF<inline-formula><mml:math id="M333" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of needleleaf evergreen and deciduous PFTs (Fig. 2b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e5276">Three-year annual average change in <bold>(a)</bold> isoprene and <bold>(b)</bold> monoterpene (MT) emissions following the change in EF<inline-formula><mml:math id="M334" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values.</p></caption>
          <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/3083/2023/gmd-16-3083-2023-f03.png"/>

        </fig>

      <p id="d1e5300">For the PI and future simulations with UKESM1 (Fig. S1), the new EF<inline-formula><mml:math id="M335" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>
values lead to reductions in total global isoprene (terpene) emissions of
13 % (11 %) and 8 % (8 %) in the PI and 2050 SSP3-7.0 scenarios
respectively compared to the default EF<inline-formula><mml:math id="M336" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (Base PI). For both
scenarios, isoprene emissions from C<inline-formula><mml:math id="M337" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs decrease by <inline-formula><mml:math id="M338" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 90 %, while emissions from broadleaf evergreen tropical trees increase by
<inline-formula><mml:math id="M339" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 %. This leads to emission increases over Amazonia and the Congo but decreases north and south of the Congo (Fig. S1a, c). Terpene
emissions from C<inline-formula><mml:math id="M340" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs drop to almost zero and decrease by <inline-formula><mml:math id="M341" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 60 % from needleleaf evergreen trees while increasing by around 50 % from broadleaf evergreen tropical trees, driving a tropical emission
increase and high-latitude emission decrease (Fig. S1b, d).</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Isoprene column comparison</title>
      <p id="d1e5369">We compare the output from the PD simulations to the CrIS observed isoprene
columns (Sect. 3.3) for January, April, July and October 2013 (Fig. 4). The
use of nudging significantly reduces the difference in meteorology between
the simulations and reality, greatly improving the comparability of modelled
and observational data. However, the lowest 11 model levels (up to approx. 700–1000 m) are not nudged, so there will be some differences between the model simulation conditions and reality in the boundary layer, although this
is tempered by the nudging applied to the higher levels.</p>
      <p id="d1e5372">For the 4 months considered, IEF_SLW_UKESM_PD and IEF_SLW_CLM5_PD yield lower total isoprene emissions than Control_1yr_PD but show generally slightly
higher column biases in the same regions where the control run has a bias, chiefly in western Amazonia.</p>
      <p id="d1e5375">This bias exacerbation is slightly greater in IEF_SLW_CLM5_PD than IEF_SLW_UKESM_PD and is likely driven by the
increase in IEF<inline-formula><mml:math id="M342" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> for the tropical broadleaf evergreen trees which
are dominant in the region. The biases over central Africa are very similar
between the three approaches.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e5390">Modelled isoprene column compared to observational data (Wells et
al., 2020) for <bold>(a–c)</bold> January 2013, <bold>(d–f)</bold> April 2013, <bold>(g–i)</bold> July 2013 and
<bold>(j–l)</bold> October 2013. Model data from UKESM1 IEF<inline-formula><mml:math id="M343" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> new IEF<inline-formula><mml:math id="M344" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (UKESM1 SLW) and new IEF<inline-formula><mml:math id="M345" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (CLM5 SLW) from Control_1yr_PD, IEF_SLW_UKESM_PD and IEF_SLW_CLM5_PD simulations respectively. Numbers show mean absolute
bias (MAB <inline-formula><mml:math id="M346" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M347" display="inline"><mml:mo>|</mml:mo></mml:math></inline-formula> model <inline-formula><mml:math id="M348" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> obs <inline-formula><mml:math id="M349" display="inline"><mml:mo>|</mml:mo></mml:math></inline-formula>) weighted by area for each
continent (the African value excludes the Sahara).</p></caption>
          <?xmltex \igopts{width=441.017717pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/3083/2023/gmd-16-3083-2023-f04.png"/>

        </fig>

      <p id="d1e5467">The increased biases with the new IEF<inline-formula><mml:math id="M350" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (e.g. the increase of 0.5–0.7 <inline-formula><mml:math id="M351" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M352" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula> molecules cm<inline-formula><mml:math id="M353" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> over South America in January 2013, Fig. 4a–c) is not necessarily indicative of these new IEF<inline-formula><mml:math id="M354" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>
values being less accurate than the original IEF<inline-formula><mml:math id="M355" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values which may
be performing better due to offsetting issues. Biases in LULC, as
highlighted by the comparison of UKESM1 and CLM5 in terms of broadleaf
vs. deciduous tropical trees, simulated chemistry and emissions of other species (e.g. NO<inline-formula><mml:math id="M356" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>) which affect the atmospheric oxidising capacity and thus isoprene concentrations will also contribute to the enhanced model
bias. The difference in model bias between simulations with the default and
new IEF<inline-formula><mml:math id="M357" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values is noticeably smaller than the difference in
the model bias when different chemical mechanisms are used. For example, in
April 2013, the mean bias over South America in the Strat-Trop mechanism
(Archibald et al., 2020) was 5.7 <inline-formula><mml:math id="M358" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M359" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula> molecules cm<inline-formula><mml:math id="M360" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and this decreased substantially to 0.6 <inline-formula><mml:math id="M361" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M362" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula> molecules cm<inline-formula><mml:math id="M363" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
when CS2 was used (Fig. 2; Weber et al., 2021)</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><?xmltex \opttitle{C${}_{4}$ emission observation comparison}?><title>C<inline-formula><mml:math id="M364" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> emission observation comparison</title>
      <?pagebreak page3096?><p id="d1e5619">Given the major change to the IEF<inline-formula><mml:math id="M365" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values of C<inline-formula><mml:math id="M366" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass, the isoprene
emissions from C<inline-formula><mml:math id="M367" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses were compared to observations in southern Africa
(Sect. 3.3, Fig. 5). The model resolution (<inline-formula><mml:math id="M368" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 100 <inline-formula><mml:math id="M369" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 100 km in
the region of relevance) means the grid cells where observations were made contained high fractions of strong isoprene emitters, typically broadleaf
evergreen tropical trees and C<inline-formula><mml:math id="M370" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses. To isolate the impact of C<inline-formula><mml:math id="M371" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass emissions, we take the area-weighted mean of emissions from grid cells
in the region where C<inline-formula><mml:math id="M372" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses comprise <inline-formula><mml:math id="M373" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 80 % of the total
surface types (vegetation and non-vegetation). We use the 3-year monthly
mean for the month when observations were recorded and apply a scaling
factor of 2 to account for the fact that isoprene emissions are zero at
night. (Emission measurements were only taken during the day, while the use of model monthly average values means that approximately half of the data
points going into the model value will been zero, halving the model's
average.)</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e5700">Simulated isoprene emissions from the IEF<inline-formula><mml:math id="M374" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> currently used
in UKESM1 and the new IEF<inline-formula><mml:math id="M375" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> described in this study and observations.
For the simulated emissions, we only consider grid cells with <inline-formula><mml:math id="M376" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 80 % C<inline-formula><mml:math id="M377" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass located in the same regions as the observations.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/3083/2023/gmd-16-3083-2023-f05.png"/>

        </fig>

      <p id="d1e5743">While comparison of these model and observational data should be treated as
illustrative rather than definitive for the reasons explained above, it
suggests that the reduction in C<inline-formula><mml:math id="M378" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> IEF<inline-formula><mml:math id="M379" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> may help to reduce the model
high bias in C<inline-formula><mml:math id="M380" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>-grass-dominant regions. We also note that the observed values represent an upper bound since the emissions in some regions will be
below the limit of detection (e.g. Harley et al., 2003).</p>
</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>Terpene emission evaluation</title>
      <p id="d1e5782">While the primary focus of this paper is correcting the error with the
emission factors for C<inline-formula><mml:math id="M381" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses, we also performed a comparison of
monoterpene emissions measured by the SMEAR II station in Hyytiälä in the boreal forest, with emissions from simulations using the current
TEF<inline-formula><mml:math id="M382" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (Control_1yr_PD) and updated
TEF<inline-formula><mml:math id="M383" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (TEF_AP_BP_PD)
values. We found that the new TEF<inline-formula><mml:math id="M384" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> yielded emissions which compared well to observations (Fig. S2).</p>
</sec>
<sec id="Ch1.S4.SS5">
  <label>4.5</label><title>Impact on response to LULC changes</title>
      <p id="d1e5829">Tropical broadleaf evergreen trees and C<inline-formula><mml:math id="M385" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass PFTs are some of the most
widespread vegetation types in the tropics. The respective increase and
decrease in EF<inline-formula><mml:math id="M386" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values for these PFTs means the response of BVOC
emissions to a change in the relative fractions of these species is likely
to be quite different when using default and new EF<inline-formula><mml:math id="M387" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values. We
explored this further using UKESM1 and CESM and the MaxForest scenarios
since this scenario involves, among other changes, increases to tropical
broadleaf evergreen tree cover at the expense of C<inline-formula><mml:math id="M388" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses in Africa and
eastern Brazil (Fig. S3 and Table 5).</p>
      <p id="d1e5868">When the UKESM1 default EF<inline-formula><mml:math id="M389" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values are used, the extensive
reforestation/afforestation in the Maxforest scenario yields a reduction in isoprene emissions relative to 2010 (Fig. 6a). This is due to the decrease in C<inline-formula><mml:math id="M390" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>
grass coverage shown by emission reductions in regions where C<inline-formula><mml:math id="M391" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grasses are
replaced by trees. By contrast, when the updated EF<inline-formula><mml:math id="M392" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values are
used, the Maxforest scenario leads to an increase in isoprene emissions in
UKESM1 (Fig. 6b) which resembles the response simulated in CESM (Fig. 6c).
The similarity between the responses in UKESM1 to the new EF<inline-formula><mml:math id="M393" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and CESM is not surprising since CESM also uses the MEGAN v2.1 scheme for the
emissions of isoprene.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e5918">Annual mean change (2050 minus 2010) in isoprene emissions in the <bold>(a)</bold> original UKESM1, <bold>(b)</bold> UKESM1 with new IEF<inline-formula><mml:math id="M394" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> and <bold>(c)</bold> CESM2 following widespread tree planting under the Maxforest scenario. Values in parentheses
show the global mean difference in emissions.</p></caption>
          <?xmltex \igopts{width=469.470472pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/16/3083/2023/gmd-16-3083-2023-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS6">
  <label>4.6</label><?xmltex \opttitle{Recommended EF${}_{\mathrm{mass}}$}?><title>Recommended EF<inline-formula><mml:math id="M395" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula></title>
      <p id="d1e5962">For isoprene, there is little to differentiate the approaches using SLW from
CLM5 or UKESM1. The CLM5 SLW approach yields slightly higher column biases
but total PD emissions (491 vs. 457 Tg yr<inline-formula><mml:math id="M396" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Table 4) which are closer to the median of other estimates (<inline-formula><mml:math id="M397" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 500 Tg yr<inline-formula><mml:math id="M398" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Messina et
al., 2016). The CLM5 SLW approach allows PFT-specific SLW values to be used
to calculate the EF<inline-formula><mml:math id="M399" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of the MEGAN v2.1 PFTs before they are lumped
into UKESM PFTs, while using the UKESM1 SLW values means lumping must occur before the EF<inline-formula><mml:math id="M400" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> are calculated, potentially increasing uncertainty
in the output. Overall, we tentatively recommend using the IEF<inline-formula><mml:math id="M401" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>
values calculated using the CLM5 values (i.e. IEF_SLW_CLM5_PD). For terpenes, based on total
emissions we recommend the TEF<inline-formula><mml:math id="M402" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> calculated from the TEF<inline-formula><mml:math id="M403" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> of
<inline-formula><mml:math id="M404" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M405" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene in a <inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> ratio (Guenther et al., 2012), i.e. those used in TEF_all_PD. These EF<inline-formula><mml:math id="M407" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values are given in Table 6.</p>
      <p id="d1e6078">We do not claim that the new EF<inline-formula><mml:math id="M408" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values are the final word on the
matter; rather, we believe that they represent an improvement over those currently used in UKESM1 and provide a clear method for recalculation in the future should revised EF<inline-formula><mml:math id="M409" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> values be developed and/or a wider range of PFTs
considered.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T6"><?xmltex \currentcnt{6}?><label>Table 6</label><caption><p id="d1e6102">Recommended EF<inline-formula><mml:math id="M410" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M411" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">gC</mml:mi></mml:mrow></mml:math></inline-formula> g<inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mi mathvariant="normal">dw</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> h<inline-formula><mml:math id="M413" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for
use in iBVOC.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">UKESM1 PFT</oasis:entry>
         <oasis:entry colname="col2">IEF<inline-formula><mml:math id="M414" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">TEF<inline-formula><mml:math id="M415" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf deciduous trees</oasis:entry>
         <oasis:entry colname="col2">72.3</oasis:entry>
         <oasis:entry colname="col3">2.7</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf evergreen tropical trees</oasis:entry>
         <oasis:entry colname="col2">38.1</oasis:entry>
         <oasis:entry colname="col3">1.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Broadleaf evergreen temperate trees</oasis:entry>
         <oasis:entry colname="col2">54.4</oasis:entry>
         <oasis:entry colname="col3">1.3</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf deciduous trees</oasis:entry>
         <oasis:entry colname="col2">0.01</oasis:entry>
         <oasis:entry colname="col3">1.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Needleleaf evergreen trees</oasis:entry>
         <oasis:entry colname="col2">6.3</oasis:entry>
         <oasis:entry colname="col3">0.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M416" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">11.6</oasis:entry>
         <oasis:entry colname="col3">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M417" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> crop</oasis:entry>
         <oasis:entry colname="col2">0.01</oasis:entry>
         <oasis:entry colname="col3">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M418" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
         <oasis:entry colname="col2">0.01</oasis:entry>
         <oasis:entry colname="col3">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M419" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass</oasis:entry>
         <oasis:entry colname="col2">2.20</oasis:entry>
         <oasis:entry colname="col3">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M420" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> crop</oasis:entry>
         <oasis:entry colname="col2">0.01</oasis:entry>
         <oasis:entry colname="col3">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C<inline-formula><mml:math id="M421" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> pasture</oasis:entry>
         <oasis:entry colname="col2">0.01</oasis:entry>
         <oasis:entry colname="col3">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Shrub deciduous</oasis:entry>
         <oasis:entry colname="col2">35.2</oasis:entry>
         <oasis:entry colname="col3">1.3</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Shrub evergreen</oasis:entry>
         <oasis:entry colname="col2">10.2</oasis:entry>
         <oasis:entry colname="col3">0.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{6}?></table-wrap>

</sec>
<sec id="Ch1.S4.SS7">
  <label>4.7</label><title>Uncertainties and future work</title>
      <p id="d1e6416">Accurate modelling of BVOC emissions depends on the parameterisations within
the emission module (in this case, iBVOC) and the simulations of external
factors, which influence emissions. This study deals with just one part of
this framework: biases in these external factors can limit the effectiveness
of model–observation comparisons, such as the satellite-derived isoprene columns shown in Fig. 4, and offsetting errors can lead to reasonable
results, at a given period in time, or improvements to certain components
(e.g. emission factors) yielding reductions in model performance. Nevertheless, progress towards an approach that faithfully captures
biosphere–atmosphere interactions requires incremental improvements to all contributing factors. Here we<?pagebreak page3097?> describe some other sources of uncertainty in
the simulation of BVOCs and areas where future work would be useful.</p>
      <p id="d1e6419">iBVOC includes dependencies on CO<inline-formula><mml:math id="M422" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, temperature, photosynthetic
activity and plant functional type, with the latter the focus of this study.
MEGANv2.1 considers the role of leaf age in emissions and leaf temperature over the past 24 and 240 h, while these factors are omitted in
iBVOC: assessing the impact of these parameterisations in iBVOC would be
worthwhile.</p>
      <p id="d1e6431">Within the parameterisation of PFT dependency updated in the study, several
areas of uncertainty have been identified. The impact of SLW value
variations and the multiple options regarding which TEF<inline-formula><mml:math id="M423" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> values to
use have been quantified with the range of simulations performed in this work. Other areas of uncertainty have not been fully scrutinised due to a
relative lack of observational data. Compared to the species which are
strong isoprene emitters, observations of emissions from grasses are sparse,
hindering further model validation. MEGAN v2.1 also prescribes a single,
very small EF<inline-formula><mml:math id="M424" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">area</mml:mi></mml:msub></mml:math></inline-formula> for all crops and pasture, resulting in negligible
emissions from these PFTs. Emissions from longer-lived crops and pasture are
likely to tend towards grasses and the projected expansion of these PFTs in
some future scenarios, particularly those with increasing population, meaning that capturing emissions from these PFTs may become more important. Further
observations would aid in this effort. We also note that the emission
factors in MEGAN v2.1 are not perfect and will continue to be refined. For
example, Sindelarova et al. (2022) updated emission factors for <inline-formula><mml:math id="M425" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene for certain tree PFTs. For consistency, the MEGAN emission factors
used in this study are all from MEGAN v2.1, but future development of iBVOC should take into account the latest understanding of emission factors.</p>
      <p id="d1e6459">Simulation of external factors including land cover (cf. the effect of
swapping UKESM and CESM LULC on simulated emissions; Table 4), surface
temperature and meteorological conditions (e.g. droughts and floods) also affect BVOC emissions (e.g. Sheil, 2018; Yáñez-Serrano et al., 2020).</p>
      <p id="d1e6463">The reduced nature of Earth system models requires the aggregation of a wide range of vegetation types, which in reality have varying emission factors,
into a small number of PFTs. This oversimplification can lead to unrealistic
emissions in certain locations (e.g. the inclusion of shrubs EF in grasses EF) and discrepancies between different modelling approaches (e.g.
UKESM1 vs. CESM). Assessment of the impact of using a wider range of PFTs, based on more highly resolved emission factor datasets (e.g. Karl et al., 2009), would be informative.</p>
      <p id="d1e6466">The expansion of iBVOC to speciate terpenes into separate <inline-formula><mml:math id="M426" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene
and <inline-formula><mml:math id="M427" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene tracers and the addition of new molecules, such as
sesquiterpenes, would be beneficial for simulating atmospheric composition.
<inline-formula><mml:math id="M428" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M429" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene display different chemical reactivity, while sesquiterpenes can suppress local O<inline-formula><mml:math id="M430" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and affect SOA formation
by producing highly involatile species which can nucleate new particles
without sulfuric acid (e.g. Bianchi et al., 2019; Weber et al., 2020).</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e6516">The influence of BVOC emissions on atmospheric composition and climate and
the predicted changes in these emissions from climatic and land use drivers
means accurate modelling is critical for understanding past, present and future climate.</p>
      <?pagebreak page3098?><p id="d1e6519">In this study we have described the development and evaluation of
alternative sets of emission factors (EF<inline-formula><mml:math id="M431" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula>) for isoprene and monoterpenes from the established MEGAN v2.1 scheme. This development
rectifies the issue in the current UKESM1 set-up of the over-contribution to total isoprene emissions from C<inline-formula><mml:math id="M432" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs, caused by the differences in the
scope of vegetation types included in the C<inline-formula><mml:math id="M433" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M434" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> PFTs in UKESM1 and the
previous source of emission factors, ORCHIDEE. The correction reduces the C<inline-formula><mml:math id="M435" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass contribution to total isoprene emissions, bringing them into line with other literature. Meanwhile, EF<inline-formula><mml:math id="M436" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values for isoprene and terpene increase for the three broadleaf tree PFTs in UKESM1. This leads to the
fraction of both isoprene and terpene produced by the tropical broadleaf
evergreen tree increasing from <inline-formula><mml:math id="M437" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 % to <inline-formula><mml:math id="M438" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 %.</p>
      <p id="d1e6591">During the calculation, we identified variation in SLW datasets and the decision on which monoterpene emission factors to use as sources of
uncertainty in the final EF<inline-formula><mml:math id="M439" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values. The high bias in simulated
isoprene column values increases slightly with the updated IEF<inline-formula><mml:math id="M440" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values compared to the UKESM1 approach, although this change is much smaller than
that caused by switching between chemical mechanisms.</p>
      <p id="d1e6612">When using the current UKESM1 EF<inline-formula><mml:math id="M441" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values, isoprene emissions
decrease in future LULC scenarios featuring wide-scale tree planting relative to 2010 levels due to the erroneously high IEF<inline-formula><mml:math id="M442" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> of C<inline-formula><mml:math id="M443" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass. When the new EF<inline-formula><mml:math id="M444" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> values are used, isoprene emission increases and UKESM's response agrees closely with the response simulated by CESM. Thus, the
increase in EF<inline-formula><mml:math id="M445" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mass</mml:mi></mml:msub></mml:math></inline-formula> for tropical trees and the reduction for C<inline-formula><mml:math id="M446" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass PFTs are likely to have consequences for the evolution of isoprene emissions under different future scenarios given the competition between C<inline-formula><mml:math id="M447" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> grass PFTs and tropical broadleaf evergreen trees (e.g. cropland expansion vs. reforestation/afforestation efforts).</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e6683">The UKESM1 model data generated for this work and the code used to analyse
it are available in the following repository: <ext-link xlink:href="https://doi.org/10.5281/zenodo.7741131" ext-link-type="DOI">10.5281/zenodo.7741131</ext-link> (Weber, 2023).</p>

      <p id="d1e6689">Simulations used in this work were performed using version 12.0 of the Met
Office Unified Model (UM) and vn5.6 of the Joint United Kingdom Land
Environment Simulator (JULES). Details of how to access and run the model
can be found at <uri>https://cms.ncas.ac.uk/unified-model/configurations/ukesm/relnotes-1.0/amip/</uri> (NCAS Computational Modelling Services, 2023).</p>

      <p id="d1e6695">Due to intellectual property right restrictions, we cannot provide either
the source code or documentation papers for the UM. The Met Office United
Model is available for use under licence. A number of research organisations and national meteorological services use the UM in collaboration with the UK
Met Office to undertake basic atmospheric process research, produce
forecasts, develop the UM code and build and evaluate Earth system models. No UM/UKESM1 code has been changed for this study, only the emission factor
parameters, and Pacifico et al. (2011) provide a full explanation of the relevant equations used to model emissions in UKESM1. For further
information on how to apply for a licence, see <uri>https://www.metoffice.gov.uk/research/approach/modelling-systems/unified-model</uri> (Met Office, 2023).</p>

      <p id="d1e6701">The UM and/or JULES code branch(es) used in the publication have not all
been submitted for review and inclusion in the UM/JULES trunk or released
for general use. However, the UM and JULES code branches were made available
to reviewers of this paper.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e6704">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/gmd-16-3083-2023-supplement" xlink:title="pdf">https://doi.org/10.5194/gmd-16-3083-2023-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e6713">JW calculated the new EF, with advice from KS, and performed the UKESM1
model simulations. JAK performed the CESM model simulations. JW analysed all
the model simulations, and JW, JAK and MVM discussed the model output.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e6719">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e6725">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e6731">This work used Monsoon2, a collaborative high-performance computing facility
funded by the Met Office and the Natural Environment Research Council. This
work used Joint Analysis System Meeting Infrastructure Needs (JASMIN), the UK collaborative data analysis facility. This work was supported by the United Kingdom Research and Innovation (UKRI) Future Leaders Fellowship Programme awarded to Maria Val Martin
(MR/T019867/1). High-performance computing support from Cheyenne
(<ext-link xlink:href="https://doi.org/10.5065/D6RX99HX" ext-link-type="DOI">10.5065/D6RX99HX</ext-link>, Cheyenne Supercomputer, 2023) was provided by the National Center for Atmospheric Research (NCAR)'s Computational and Information Systems Laboratory, sponsored by the National Science Foundation.
We thank  Alex Guenther for helpful discussions.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e6739">This research has been supported by the UK Research and Innovation, Medical Research Council (grant no. MR/T019867/1).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e6745">This paper was edited by Fiona O'Connor and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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