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  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-15-3253-2022</article-id><title-group><article-title>Estimating aerosol emission from SPEXone on the NASA PACE mission using an ensemble Kalman smoother: observing<?xmltex \hack{\break}?> system simulation experiments (OSSEs)</article-title><alt-title>Estimating aerosol emission from SPEXone under OSSEs​​​​​​​</alt-title>
      </title-group><?xmltex \runningtitle{Estimating aerosol emission from SPEXone under OSSEs​​​​​​​}?><?xmltex \runningauthor{A. Tsikerdekis et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Tsikerdekis</surname><given-names>Athanasios</given-names></name>
          <email>a.tsikerdekis@sron.nl</email>
        <ext-link>https://orcid.org/0000-0002-4694-2015</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Schutgens</surname><given-names>Nick A. J.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9805-6384</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Fu</surname><given-names>Guangliang</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8916-0243</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Hasekamp</surname><given-names>Otto P.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1494-2539</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Earth Group, SRON Netherlands Institute for Space Research, 2333 CA Leiden, the Netherlands​​​​​​​</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Earth Science, Vrije Universiteit Amsterdam, 1081 HV
Amsterdam, the Netherlands</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Athanasios Tsikerdekis (a.tsikerdekis@sron.nl)</corresp></author-notes><pub-date><day>21</day><month>April</month><year>2022</year></pub-date>
      
      <volume>15</volume>
      <issue>8</issue>
      <fpage>3253</fpage><lpage>3279</lpage>
      <history>
        <date date-type="received"><day>19</day><month>August</month><year>2021</year></date>
           <date date-type="rev-request"><day>2</day><month>November</month><year>2021</year></date>
           <date date-type="rev-recd"><day>7</day><month>February</month><year>2022</year></date>
           <date date-type="accepted"><day>10</day><month>March</month><year>2022</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2022 Athanasios Tsikerdekis et al.</copyright-statement>
        <copyright-year>2022</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022.html">This article is available from https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e116">We present a top-down approach for aerosol emission
estimation from Spectropolarimeter for Planetary
Exploration (SPEXone) polarimetric retrievals related to the aerosol
amount, size, and absorption using a fixed-lag ensemble Kalman smoother
(LETKS) in combination with the ECHAM-HAM model. We assess the system by
performing observing system simulation experiments (OSSEs) in order to
evaluate the ability of the future multi-angle polarimeter instrument,
SPEXone, as well as a satellite with near-perfect global coverage. In our
OSSEs, the nature run (NAT) is a simulation by the global climate aerosol
model ECHAM-HAM with altered aerosol emissions. The control (CTL) and the
data assimilation (DAS) experiments are composed of an ensemble of ECHAM-HAM
simulations, where the default aerosol emissions are perturbed with factors
taken from a Gaussian distribution. Synthetic observations, specifically
aerosol optical depth at 550 nm (AOD<inline-formula><mml:math id="M1" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>), Ångström exponent from 550
to 865 nm (AE<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>), and single-scattering albedo at 550 nm
(SSA<inline-formula><mml:math id="M3" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>) are assimilated in order to estimate the aerosol emission
fluxes of desert dust (DU), sea salt (SS), organic carbon (OC), black carbon
(BC), and sulfate (SO<inline-formula><mml:math id="M4" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>), along with the emission fluxes of two SO<inline-formula><mml:math id="M5" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>
precursor gases (SO<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, DMS). The prior emission global relative mean
absolute error (MAE) before the assimilation ranges from 33 % to 117 %.
Depending on the species, the assimilated observations sampled using the
satellite with near-perfect global coverage reduce this error to equal to
or lower than 5 %. Despite its limited coverage, the SPEXone sampling
shows similar results, with somewhat larger errors for DU and SS (both
having a MAE equal to 11 %). Further, experiments show that doubling the
measurement error increases the global relative MAE up to 22 % for DU and
SS. In addition, our results reveal that when the wind of DAS uses a
different reanalysis dataset (ERA5 instead of ERA-Interim) to the NAT, the
estimated SS emissions are negatively affected the most, while other aerosol
species are negatively affected to a smaller extent. If the DAS uses dust or
sea salt emission parametrizations that are very different from the NAT,
posterior emissions can still be successfully estimated, but this experiment
revealed that the source location is important for the estimation of dust
emissions. This work suggests that the upcoming SPEXone sensor will provide
observations related to aerosol amount, size, and absorption with sufficient
coverage and accuracy in order to estimate aerosol emissions.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e183">Data assimilation methods can greatly improve the aerosol representation in
the atmosphere by combining the simulated aerosol state of a model with the
observed aerosol optical and microphysical properties retrieved from
satellites. The accuracy of the spatiotemporal distribution of an aerosol
species in a data assimilation product depends both on the accuracy of the
simulated processes in the model as well as the quality and the type of the
assimilated observations. Several past studies estimated aerosol emission
based on remote sensing observations
(Dubovik
et al., 2008; Jin et al., 2019; Pope et al., 2016; Sekiyama et al., 2010; Xu
et al., 2013), although only some studies assimilated size related
measurements, such as aerosol optical depth (AOD) in two wavelengths or fine
and coarse AOD or Ångström exponent (AE)
(Escribano
et al., 2017; Huneeus et al., 2012; Schutgens et al., 2012). In addition,
very few recent studies assimilated absorption-related measurements like
absorption aerosol optical depth (AAOD) or single-scattering albedo (SSA) to
correct either the aerosol mixing ratio (Tsikerdekis et
al., 2021a) or the aerosol emissions (Chen et al., 2018,
2019). Absorption observations were used by
Kacenelenbogen et al. (2019) to estimate the
short-wave direct aerosol effect from the A-Train satellite sensors.
Further, Schutgens
et al. (2021) intercompared and evaluated  four AERONET satellite
products (FL-MOC, OMAERUV, POLDER-GRASP, and POLDER-SRON) for AAOD and SSA
and suggested that satellite absorption observations could be used to
evaluate AEROCOM model biases because the diversity of model biases is larger
than satellite biases.</p>
      <p id="d1e186">It has been noted in the past that multi-viewing angle and multi-wavelength
intensity and polarization measurements with high accuracy have the largest
capability to provide the aerosol properties relevant to climate research
(Hasekamp and Landgraf, 2007). Recently,
Hasekamp et al. (2019b) showed that
polarimetric satellite retrievals related to aerosol shape, size, and number
provide a more accurate aerosol indirect radiative effect compared to
previous observational-based studies. Unfortunately only one such
multi-angle polarimeter (MAP) provided aerosol optical and microphysical
properties from space for several years in the past (2004–2013), the
Polarization and Directionality of Earth Reflectances (POLDER-3) on board
the microsatellite PARASOL (Dubovik et
al., 2019).</p>
      <p id="d1e189">Several MAP instruments are scheduled for launch in the coming 3 years
(Dubovik et al., 2019), with the NASA
PACE mission (Werdell et al., 2019)
hosting two MAP sensors onboard, the Spectropolarimeter for Planetary
Exploration SPEXone
(Hasekamp et al., 2019a) and
the Hyper-Angular Rainbow Polarimeter-2 (HARP-2). Since these instruments
are not yet in space, their observational capabilities for aerosol optical
properties (and consequently their potential to estimate aerosol-species-specific emission fluxes) can only be theoretically predicted with
observing system simulation experiments (OSSEs)
(Arnold and
Dey, 1986; Timmermans et al., 2015). In OSSEs a model simulation is assumed
as reality, also known as the nature run (NAT), from which synthetic
measurements are sampled based on the spatiotemporal coverage of an assumed
satellite sensor. Subsequently, two experiments are conducted, a control
(CTL) and a data assimilation (DAS) experiment, in which the sampled
synthetic observations from the NAT are assimilated. Note that the NAT and
the CTL simulations are different experiments, either by using a totally
different model or by using the same model with different emissions and/or
physics options. The ability of the instrument to estimate the aerosol state
can be highlighted by evaluating the CTL and the DAS experiments with NAT.</p>
      <p id="d1e192">Timmermans et al. (2008)
firstly used OSSEs with an ensemble Kalman filter to assess the ability of
assimilated AOD sampled based on an imager type instrument and assimilated
PM<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula> sampled based on the location of ground based stations, with the goal
to estimate PM<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula> concentrations over Europe.
Meland et al. (2013) used OSSEs with an
adjoint inverse data assimilation method for aerosol emission estimation to
assess the benefits of remote polarimetric measurements over intensity measurements. Even
though the intensity measurements had broader spatial coverage, aerosol
emissions were 3 times more sensitive to the polarized reflectance at the
top of the atmosphere compared to the radiant reflectance at the top of the
atmosphere. In addition, it was highlighted that assimilated multi-angle
polarimetric measurements could substantially improve aerosol simulations.
Subsequent studies using real POLDER retrievals confirmed this for aerosol
mixing ratio estimation (Tsikerdekis et al., 2021a) and
aerosol emission estimation (Chen et al., 2019) from the
POLDER-3 instrument. Yumimoto and Takemura (2013)
used OSSEs and a 4D-Var data assimilation system to estimate aerosol
emissions based on simulated observations of fine- and coarse-mode AOD
sampled based on the Moderate Resolution Imaging Spectrometer (MODIS).
Khade et al. (2013) explored
the possibility to estimate soil erodibility factors (that drive dust
emissions) by assimilating satellite AOD in an ensemble adjustment Kalman
filter. Xu et
al. (2017) showed the usefulness of assimilating both reflected solar and
infrared radiances from the CLARREO's mission to accurately constrain size-resolved aerosol emissions for four dust size bins. Further, they concluded
that CLARREO data failed to constrain dust sources due to its narrow swath,
and the combination of narrow and wide swath observations might be more
desirable. The full scope of PACE mission observations, which include a
narrow (SPEXone) and a wide (HARP-2) swath polarimeter, as well as a wide
swath radiometer (OCI), would possibly be able to bring this idea into practice.</p>
      <p id="d1e214">In this study we quantify how well an instrument with high accuracy but
limited coverage, like SPEXone, can estimate aerosol emissions. Under the
framework of OSSEs, we implement an existing local ensemble transform Kalman
smoother (LETKS) code to operate with the global aerosol climate model
ECHAM-HAM and assimilate synthetic observations based on a future
multi-angle polarimeter instrument (SPEXone) and a theoretical satellite
with near-perfect global coverage. Following the results of our previous
work and based on the MAP observational capabilities of SPEXone, we
assimilate AOD<inline-formula><mml:math id="M9" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>, AE<inline-formula><mml:math id="M10" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and SSA<inline-formula><mml:math id="M11" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> in order to encompass
information related to aerosol mass, size, and absorption
(Tsikerdekis et al., 2021a). In Sect. 2, the SPEXone
instrument on PACE and the aerosol climate model ECHAM-HAM are described,
along with the spatiotemporal coverage and uncertainties of SPEXone and of
an idealized instrument. Section 3 presents the data assimilation system,
its newly developed features, and the experimental setup. Finally, in
Sect. 4 the ability of SPEXone to estimate emissions is presented, along with
SPEXone sensitivity experiments and other sensitivity
experiments that explore uncertainty factors that can affect the emission
estimation.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Data</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>SPEXone on PACE</title>
      <p id="d1e259">SPEXone is a passive remote sensing MAP instrument, part of the NASA
Plankton, Aerosol, Cloud, and ocean Ecosystem (PACE) mission
(Werdell et al., 2019), scheduled for
launch in 2023/2024. It was developed by the Netherlands Institute for Space
Research (SRON) and the Airbus Defense and Space Netherlands (ADS-NL) with
optical expertise from the Netherlands Organization for Applied Scientific
Research (TNO). SPEXone can measure intensity and polarization of
backscattered sunlight at multiple wavelengths and discrete viewing angles
for a specific pixel on the ground. Specifically, it can measure radiance
and polarization at five viewing angles (<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">57</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula>,
0, <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">57</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> on ground) with high accuracy
(0.003) in the degree of linear polarization (DoLP). SPEXone is a
spectrometer, measuring a continuous spectrum (at 2 nm resolution for
radiance and 10–25 nm for polarization) between the spectral range from
385 to 770 nm.  The sensor's horizontal resolution is <inline-formula><mml:math id="M17" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5.4 <inline-formula><mml:math id="M18" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 4.6 km for all viewing angles, and the swath is 100 km. The aerosol-retrieved
parameters include column AOD, AE, SSA, aerosol layer height, effective
radius, effective variance (of the size distribution), complex refractive
index, particle number for a fine- and a coarse-mode aerosol, and
a shape parameter for the coarse mode. Detailed information on the optical
and technical attributes and the retrieval capabilities of SPEXone
can be found in Hasekamp
et al. (2019a​​​​​​​) and van Amerongen et al. (2019).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>The ECHAM6-HAM2 aerosol climate model</title>
      <p id="d1e333">The sixth generation of the general circulation model ECHAM6, developed at
the Max Planck Institute for Meteorology (MPI-M) in Hamburg, Germany
(Stevens et al., 2013), and the second
version of the Hamburg Aerosol Model (HAM2)
(Stier
et al., 2005; Tegen et al., 2019; Zhang et al., 2012) are used to simulate
the physical and chemical processes of aerosol in the atmosphere.</p>
      <p id="d1e336">The M7 aerosol module used in HAM2 considers five aerosol species, dust
(DU), sea salt (SS), organic carbon (OC), black carbon (BC), and sulfates
(SO<inline-formula><mml:math id="M19" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) (Vignati et al., 2004).
Aerosols are partitioned into seven unimodal lognormal particle size
distributions (nucleation, Aitken, accumulation, coarse) called modes and
separated into two hygroscopic classes (hydrophobic and hydrophilic). Six of
these modes contain several aerosol species (internally mixed modes). Each
mode is characterized by the number concentration and the mass concentration
by species. Aerosol number and mass are used in order to calculate the
median radius for each mode (Tegen et al.,
2019). The mode width (standard deviation of the lognormal distribution) is
assumed and fixed as equal to 1.59 for the nucleation, Aitken, and accumulation modes and
2.00 for the coarse mode. The cloud and aerosol optical properties are
computed using Mie theory and derived from lookup tables
(Tegen et al., 2019) using the prognostic
concentrations of aerosol tracers
(Schultz et al., 2018).</p>
      <p id="d1e348">All aerosol species are emitted, transported, deposited, and take part in
aerosol–radiation interactions (scattering and absorption) and
aerosol microphysical processes (e.g., nucleation, coagulation, aerosol water
uptake, and cloud activation). The natural aerosol types (DU, SS) are
introduced to the atmosphere by utilizing the simulated information of wind
and certain surface and ocean characteristics. Other aerosol species (OC,
BC) or aerosol precursor gases (SO<inline-formula><mml:math id="M20" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, DMS) that are emitted from both
natural (e.g., forest fires) and anthropogenic sources use predefined
emission inventories (Zhang et
al., 2012). For a description of the importance of individual processes, see
the budget sorted by species in Schutgens and
Stier (2014).</p>
      <p id="d1e360">Two SS emission schemes are used in this study. The first and default scheme
in ECHAM-HAM parameterizes sea salt emissions based on laboratory
measurements (Keene et
al., 2007) using the wind velocity at 10 m and the sea surface temperature
(SST)
(Long
et al., 2011; Sofiev et al., 2011). Low SST results in lower sea salt
emissions with smaller particle size
(Sofiev et al., 2011). The second scheme
(previously the default option) in ECHAM-HAM calculates the sea salt flux
mass and number through tables of wind speed classes and fits to two
lognormal distributions based on Guelle et
al. (2001 and reference therein). Note that sea salt particles are emitted
only in the soluble accumulation and coarse mode in both schemes.</p>
      <p id="d1e364">Dust emissions are based on the dust source scheme developed by
Tegen et al. (2002). Wind velocity at 10 m is
the main driver of dust aerosol particle production, while soil properties
are also taken into account. The preferential dust emission sources are
consist of arid or sparsely vegetated areas and are predefined based on
Tegen et al. (2002). Improvements in the
surface aerodynamic roughness length, soil moisture, and soil properties
over East Asia specifically were made by
Cheng et al. (2008). The threshold friction
velocity depends on the soil size distribution, vegetation cover, and soil
moisture (Cheng et al., 2008). Further, updates
related to the representation of Saharan dust sources were made using
infrared dust index from the SEVIRI instrument on board the Meteosat second-generation satellite by Heinold et
al. (2016).</p>
      <p id="d1e367">The emission for the remaining aerosol types and aerosol precursors are
defined using emission inventories derived for 14 sectors. Each sector may
include one or more aerosol types or aerosol precursors
(Schultz et al.,
2018; Tegen et al., 2019). The Atmospheric Chemistry and Climate Model
Intercomparison Project (ACCMIP) dataset is used for the anthropogenic,
biomass burning, and aerosol precursor emissions, consisting of monthly mean
estimates at a horizontal resolution 0.5<inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M22" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.5<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
(Lamarque
et al., 2010). The Community Emissions Data System (CEDS) is used as an
alternative for the anthropogenic aerosol and aerosol precursor
(Hoesly et al., 2018). The first
version of Global Fire Assimilation System (GFAS) is also used for the
biomass burning emissions coming from grass and forest fires consisting of
daily gridded estimates at 0.5<inline-formula><mml:math id="M24" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M25" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.5<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> horizontal
resolution based on the fire radiative power measurements of the MODIS
instrument
(Kaiser
et al., 2012). A more detailed description of both ECHAM6 and HAM2 can be
found in Tegen et al. (2019).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Methods</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Local ensemble transform Kalman smoother</title>
      <p id="d1e437">The local ensemble transform Kalman smoother (LETKS) is used to estimate
aerosol emission fluxes. This method has been previously used by
Schutgens et al. (2012) for aerosols
emission estimation and earlier by Bruhwiler
et al. (2005), Peters et al. (2005), and Feng et al. (2009) for CO<inline-formula><mml:math id="M27" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
emission estimation. It requires a model to produce background information
based on assumed emissions and observations that are assimilated to estimate
analysis emissions. In data assimilation studies the terms analysis or
posterior are used to describe the improved state of the system due to
assimilation, although in this study we reserve the term analysis for cases
where the aerosol emissions were estimated by a fraction of the total
observations that are going to affect them in the end (more details follow).</p>
      <p id="d1e449">The data assimilation occurs in assimilation cycles, where each cycle
contains a background and an analysis step as depicted in
Fig. 1. Dashed boxes indicate the default emission
where no assimilation took place yet, while filled boxes indicate emission
changed based on observations. The background step consists of an 8 d
(<inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) forward simulation of the model that will initially (first
cycle) create the simulated background observations. Following this, all the
available observations within the last 2 d (<inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) of the
forward simulation are assimilated in order to estimate the analysis
emission for the last 6 d (<inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) of the forward simulation. Note here that the term
analysis is used to indicate the updated emissions affected by <inline-formula><mml:math id="M31" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> days of
observations (where <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), while the term posterior is
used to indicate updated emissions affected by <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> days of
observations (Fig. 1). This is where the first cycle ends. In the
second cycle, background emissions are set as equal to the analysis emissions
of the first cycle, and the respective steps of the background and
assimilation steps are then performed for the second cycle. This process
continues until the end of the assimilation experiment.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e549">An illustration of the data assimilation system. The horizontal
axis depicts time in segment of 2 d and the vertical axis the
assimilation cycles, where each consist of a background and an
analysis step. Boxes consist of 32 spatially correlated perturbation
maps for each perturbed parameter (DU, SS, OC, BC, SO<inline-formula><mml:math id="M34" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, SO<inline-formula><mml:math id="M35" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and
DMS) that are used to create the ensemble. Dashed colored boxes indicate
the default perturbations where the ensemble mean and standard deviation are
equal to 1. Solid colored boxes express the analysis emission perturbations
that were affected by the assimilation of some observations. Solid colored
boxes with an asterisk (<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula>) show the posterior emission perturbations
corrected based on 6 d of observations. Different colors signify that
different perturbations are used every 2 d. “OBS” indicates the assimilated
observations for a 2 d period. A and B are marked in order to explain the
prior correction (Sect. 3.2).</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f01.png"/>

        </fig>

      <p id="d1e586"><?xmltex \hack{\newpage}?>The assimilation window (<inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) defines the shift (step) in time
of the forward simulation in each cycle, the period of the assimilated
observations, and the period during which emissions are estimated. A <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> d allows the aggregation of more satellite observations that
provides a better constraint on emission estimates globally, but it also
assumes that emissions do not change considerably over this period.
Undoubtedly this is not always the case, for example dust emissions may vary
a lot from day to day. The smoother lag (<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
determines how many days are going to be affected by the assimilated
observations in one assimilation cycle. In our setup this is equal to 6 d, but we conduct experiments to see its impact when reduced to 4 and
2 d.</p>
      <p id="d1e633">Note that it is assumed that the observations of a certain day contain only
a fraction of the available information to change the emissions and that the rest
is contained in observations of subsequent days. Thus, emissions should be
estimated iteratively, allowing observations up to 6 d after to correct
the emissions. The posterior emission perturbations, corrected by 6 d of
observations, are derived after three assimilation cycles and are indicated with
an asterisk (<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula>) in Fig. 1. For example, the
posterior emission perturbations for days 7 and 8 are estimated in the
third assimilation cycle and are corrected from the assimilated
observations of days 7 to 12.</p>
      <p id="d1e645">Background emissions come with uncertainties. The uncertainty of background
emissions are represented by an ensemble that is generated by perturbing the
default emissions. The perturbations are not globally constant but vary from
grid cell to grid cell. Each grid cell has a distinct prior emission
distribution. Changes in neighboring grid cells of each member are not
abrupt but smooth. This spatial correlation of the prior perturbations was
generated using spatial smoothing, a method where data points are averaged
with their neighbors. A step-by-step description of how our spatially
correlated perturbations are created can be found at Sect. 3.2 of our
preceding work (Tsikerdekis et al., 2021a). The spatial correlation length
scale of the generated perturbations is approximately 25<inline-formula><mml:math id="M41" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
omnidirectionally. The perturbations are uniquely created and distinctively
estimated by the data assimilation system for each aerosol species and
sulfate precursor gas. The resulting 2D spatially correlated perturbations
are multiplied with the model's emissions for each aerosol species and each
member, resulting in an ensemble of simulations. In our experiments the
ensemble size is 32. Note that the mean and the standard deviation of
background distribution is equal to 1. Furthermore, it is noted that the
perturbations are uniquely defined every <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> d (different
colors in the boxes of Fig. 1). The rationale here
is that the simulated observations and emissions at day <inline-formula><mml:math id="M43" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (where <inline-formula><mml:math id="M44" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> is any
integer number) will be more correlated than the simulated observations at
day <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and emissions at day <inline-formula><mml:math id="M46" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>. Consequently, changes in
emissions caused by assimilated observations of day <inline-formula><mml:math id="M47" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> will be stronger
compared to changes in emissions by assimilated observations of day
<inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. This design is based on the fact that observations on the
day of the emissions carry more information about the emissions than
observations in subsequent days.</p>
      <p id="d1e737">More info regarding the emission perturbations and the ensemble can be found
in our preceding work (Tsikerdekis et al., 2021a). New
emission estimates are obtained by estimating new perturbed emission factors
based on the assimilated observations by solving the Kalman filter
equations:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M49" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E1"><mml:mtd><mml:mtext>1</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msup><mml:mi mathvariant="bold">H</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:mo>⋅</mml:mo><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">H</mml:mi><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2"><mml:mtd><mml:mtext>2</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi>I</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msup><mml:mi mathvariant="bold">H</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:mo>⋅</mml:mo><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">H</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the background state vector and
represents the variables aimed to be improved. It includes emission
perturbations of five aerosol species (DU, SS, OC, BC, SO<inline-formula><mml:math id="M51" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) and
the emission perturbations of two aerosol precursor gases (SO<inline-formula><mml:math id="M52" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, DMS).
<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the analysis state vector, which is the improved version
of <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> based on the assimilated observations
(<inline-formula><mml:math id="M55" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>). The background and analysis uncertainty and correlations of
emission are represented by the model error covariance matrix
<inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
respectively, using the ensemble. The observational uncertainties are
represented by the error covariance matrix <inline-formula><mml:math id="M58" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula>. We assume <inline-formula><mml:math id="M59" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula> to be
diagonal (i.e., correlations between observational errors are assumed to always be
zero). The observational operator <inline-formula><mml:math id="M60" display="inline"><mml:mi mathvariant="bold">H</mml:mi></mml:math></inline-formula> translates the emission
perturbations (<inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>) to the simulated observations
(<inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:mi mathvariant="bold">H</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:math></inline-formula>) and is entirely handled by the model (emission,
transport, deposition, aerosol processes, and optical properties code). <inline-formula><mml:math id="M63" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>
stands for the matrix transpose operator.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>LETKS smoother prior correction</title>
      <p id="d1e1012">The ensemble Kalman filter assumes that prior emissions in the model are
unbiased. In reality this is not necessarily the case, since emission
inventories or emission schemes in models may suffer from biases that are
often higher than the defined background uncertainty. Past studies have
demonstrated that optimizing prior emissions based on previous assimilation
cycles can improve data assimilation performance
(Bruhwiler
et al., 2005; Peng et al., 2017; Peters et al., 2005). Based on that we have
developed a method, hereafter called the “prior correction”. Prior
correction updates the prior emission based on estimated emissions from the
previous assimilation cycles, thus correcting biased emissions of the model
as the data assimilation experiment progresses in time. Specifically, the
ensemble mean (<inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) of the new emission perturbations of each cycle
is defined according to the analysis results of the previous assimilation
cycle. For example, the <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of the newly created perturbations at B
(Fig. 1) will be equal to the <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of the
perturbation at A (Fig. 1). Consequently, the
filter corrects the emissions bias based on the estimated emissions of
previous assimilation cycles.</p>
      <p id="d1e1048">Although prior correction fixes the problem of potentially biased model
prior emissions, it may introduce unwanted negative emission perturbations
when the <inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> drops below 1. One way of addressing this issue would be
to set all negative produced perturbations to zero, but this will affect the
distribution of the perturbations and make it less Gaussian. Hence, the
ensemble standard deviation (<inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) is adjusted according to the
<inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M70" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E3"><mml:mtd><mml:mtext>3</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">1.1</mml:mn><mml:mo>→</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E4"><mml:mtd><mml:mtext>4</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1.1</mml:mn><mml:mo>→</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:mn mathvariant="normal">0.9</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            As an example, three distributions with different <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and adjusted
<inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are depicted in Fig. 2. Note that even
under this design there is <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> % chance to generate a negative
value in the distribution when <inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is lower than 1, which in that
case is set to zero. The adjusted <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> method implies that emissions
will have lower relative background uncertainty when <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">1.1</mml:mn></mml:mrow></mml:math></inline-formula>. This might not benefit the data assimilation system for some dust
sources where emissions can differ substantially from day to day, although
we have not noticed examples where this is a problem.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1227">An example that shows how the ensemble standard deviation (<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">std</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
is scaled according to the ensemble mean (<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) with the prior correction
option. Although each distribution appears smooth for illustrative
purposes, they consist of 32 emission perturbation values, equal to our ensemble
size. Blue, yellow, and red curves highlight the statistics of three
distributions with an ensemble mean of 0.3, 1, and 2, respectively. The 95 %
(p95​​​​​​​) and 5 % (p05) percentile indicate the approximate highest and lowest
value of an ensemble member in these distributions. Grey curves represent in-between distribution shapes (other than the ones highlighted) with different
ensemble means.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f02.png"/>

        </fig>

      <p id="d1e1259">The prior correction approach has two optional settings where the background
<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can reach a maximum or a minimum threshold. Under the framework
of OSSEs, these background minimum and maximum values are known, since the
background and the nature emissions can be compared. However, in reality
these values can only be approximated using observations; for example, this can be done by
using the ratio of background simulated observations to real observations. The
majority of the experiments with the prior correction option use a minimum
and a maximum threshold equal to 0.3 and 3.6, respectively, based on the AOD
ratio of NAT to CTL. It is noted, however, that AOD is just one of the
assimilated observations that constrains the emissions and that further work is
needed in case background minimum and maximum settings are used in a data
assimilation experiment with real observations. The effect of prior
correction is tested by conducting two data assimilation experiments (with
and without prior correction) that are presented in Appendix A.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Observing system simulation experiments (OSSEs)</title>
      <p id="d1e1281">Observing system simulation experiments (OSSEs) are data assimilation
experiments in which synthetic observations are used that themselves are
generated by a model. The synthetic observations of an OSSE can be modified
to match the spatiotemporal coverage and observational uncertainty of any
satellite sensor. Hence, with OSSEs it is possible to assess the potential
impact of past, present, and future satellite missions on aerosol top-down
emission estimation. The unique advantage of OSSEs is that the “truth” is
perfectly known for all times, locations, and climate and aerosol components and
can be used to evaluate the performance of an experiment.</p>
      <p id="d1e1284">There are three parts of an OSSE, (i) the nature run (NAT) that represents
the “true” conditions of the aerosol state in the atmosphere, (ii) the
control (CTL) run of the model, which sets the baseline performance of the
model without data being assimilated, (iii) and the data assimilation run
(DAS) where synthetic observations are assimilated in a model identical to
the CTL model in order to improve aerosol emissions. The intercomparison of
the differences between CTL and NAT and DAS and NAT can provide the added
value of the assimilated observations, identify limitations of the data
assimilation system, or quantify the role of some processes on the estimated
emissions. The main goal of the present paper is to assess the ability of
different satellite observations for quantifying aerosol emissions.
Therefore, for all experiments we use the same physical model for the NAT,
CTL, and DAS because otherwise we cannot attribute differences between NAT
and DAS to either limitations of the satellite observations or model
differences. We also perform some additional experiments with different
nature runs (NAT_M, NAT_E) to assess different
causes of uncertainty in emission estimation (e.g., biased meteorology) in
addition to the standard nature run (NAT) and partially address the OSSE
identical twin problem
(Arnold and
Dey, 1986; Timmermans et al., 2015). Note that the meteorology of all
experiments is nudged to the ensemble mean of the 10 analysis members of ERA5
(Hersbach et al., 2020), except the
nature run NAT_M (details below).</p>
      <p id="d1e1287">The standard nature run (NAT) only changes the emissions in comparison to
CTL, by multiplying the default emissions of DU and SS by 0.5; the default
emissions of OC and BC by 2; and the default emission of SO<inline-formula><mml:math id="M80" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, SO<inline-formula><mml:math id="M81" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>,
and DMS by 1.5. These emission factors are within the current range of
uncertainty of aerosol emissions (discussed in
Tsikerdekis et al., 2021a) and create a distinct
difference in the global and regional distribution of AOD, AE, and SSA in
comparison to CTL. These emission factors are chosen arbitrary, aiming to
test if the data assimilation is able to estimate them correctly (test the
system), rather than to reduce biases between NAT and a specific set of
observations of an existing satellite (e.g., POLDER-3). Nevertheless the
differences between CTL and POLDER and CTL and NAT exhibit similarities in the
biomass burning region in the tropics and the global ME and MAE of these
differences are on the same scale (not shown). The second nature run
(NAT_M) uses the same altered emissions as NAT but its
meteorology is nudged to reanalysis ERA-Interim. Consequently, the
assimilated observations sampled from NAT_M can show the
impact of biased meteorology on emission estimation. To investigate whether
the scaling of emissions in NAT represents a too simple difference between
nature and data assimilation run, a new nature run (NAT_E)
was performed that changes emission parameterizations schemes for DU and SS
and uses different emission inventories for the other species. This approach
creates distinct spatiotemporal differences between the two runs in each
species. An overview of all the NAT emission choices is depicted in
Table 1.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e1312">Emissions inventories and schemes used per sector for all NAT
experiments. Note that NAT and NAT_M use the same emissions
inventories and schemes as CTL and DAS but use emission factors (per
species) to scale the emissions. ACCMIP is the Atmospheric Chemistry and Climate
Model Intercomparison. GFAS is the Global Fire Assimilation System. CEDS is the
Community Emissions Data System. The terms ndust and nseasalt refer to the emission scheme options used by the model ECHAM-HAM.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.95}[.95]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Emission sectors</oasis:entry>
         <oasis:entry colname="col2">Species</oasis:entry>
         <oasis:entry colname="col3">CTL and DAS</oasis:entry>
         <oasis:entry colname="col4">NAT and NAT_M <?xmltex \hack{\hfill\break}?>(emission factors)</oasis:entry>
         <oasis:entry colname="col5">NAT_E <?xmltex \hack{\hfill\break}?>(schemes &amp; inventories)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Dust</oasis:entry>
         <oasis:entry colname="col2">DU</oasis:entry>
         <oasis:entry colname="col3">ndust <inline-formula><mml:math id="M82" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 5</oasis:entry>
         <oasis:entry colname="col4">0.5</oasis:entry>
         <oasis:entry colname="col5">ndust <inline-formula><mml:math id="M83" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sea salt</oasis:entry>
         <oasis:entry colname="col2">SS</oasis:entry>
         <oasis:entry colname="col3">nseasalt <inline-formula><mml:math id="M84" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 7</oasis:entry>
         <oasis:entry colname="col4">0.5</oasis:entry>
         <oasis:entry colname="col5">nseasalt <inline-formula><mml:math id="M85" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Oceanic</oasis:entry>
         <oasis:entry colname="col2">DMS</oasis:entry>
         <oasis:entry colname="col3">nseasalt <inline-formula><mml:math id="M86" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 7</oasis:entry>
         <oasis:entry colname="col4">1.5</oasis:entry>
         <oasis:entry colname="col5">nseasalt <inline-formula><mml:math id="M87" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Forest fires</oasis:entry>
         <oasis:entry colname="col2">OC, BC, SO<inline-formula><mml:math id="M88" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, DMS</oasis:entry>
         <oasis:entry colname="col3">GFAS</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">ACCMIP</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Grass fires</oasis:entry>
         <oasis:entry colname="col2">OC, BC, SO<inline-formula><mml:math id="M89" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, DMS</oasis:entry>
         <oasis:entry colname="col3">GFAS</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">ACCMIP</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Domestic</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M90" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Energy</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M91" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Industry</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M92" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Ships</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M93" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Transport</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M94" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Waste</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M95" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Aircraft</oasis:entry>
         <oasis:entry colname="col2">BC</oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2</oasis:entry>
         <oasis:entry colname="col5">CEDS</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Agricultural waste burning</oasis:entry>
         <oasis:entry colname="col2">BC, OC, SO<inline-formula><mml:math id="M96" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">ACCMIP</oasis:entry>
         <oasis:entry colname="col4">2 or 1.5</oasis:entry>
         <oasis:entry colname="col5">ACCMIP</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Biogenic</oasis:entry>
         <oasis:entry colname="col2">OC</oasis:entry>
         <oasis:entry colname="col3">AEROCOM II</oasis:entry>
         <oasis:entry colname="col4">2</oasis:entry>
         <oasis:entry colname="col5">AEROCOM II</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Terrestrial</oasis:entry>
         <oasis:entry colname="col2">DMS</oasis:entry>
         <oasis:entry colname="col3">AEROCOM II</oasis:entry>
         <oasis:entry colname="col4">1.5</oasis:entry>
         <oasis:entry colname="col5">AEROCOM II</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Volcanic (continuous)</oasis:entry>
         <oasis:entry colname="col2">SO<inline-formula><mml:math id="M97" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">AEROCOM II</oasis:entry>
         <oasis:entry colname="col4">1.5</oasis:entry>
         <oasis:entry colname="col5">AEROCOM II</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Volcanic (explosive)</oasis:entry>
         <oasis:entry colname="col2">SO<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">AEROCOM II</oasis:entry>
         <oasis:entry colname="col4">1.5</oasis:entry>
         <oasis:entry colname="col5">AEROCOM II</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Instrument coverage and uncertainty</title>
      <p id="d1e1807">The SPEXone spatial coverage at native resolution (<inline-formula><mml:math id="M99" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 5.4 <inline-formula><mml:math id="M100" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 4.6 km) was simulated using an orbit simulator for cloud-free pixels based on
the MODIS cloud product. In our case, we would like for SPEXone spatial
coverage to be consistent with ECHAM clouds; thus, we modified the SPEXone
spatial coverage to match ECHAM cloud mask. The goal of this post-processing
was to create an ECHAM cloud-based SPEXone mask that provided a similar amount
of observations to that of the MODIS cloud-based SPEXone mask (more details are given in
Appendix B).</p>
      <p id="d1e1824">An ideal sensor in terms of spatial coverage was assumed in order to test
the data assimilation system and act as a benchmark for the SPEXone ability
to estimate aerosol emissions. This sensor, hereafter referred to as SUPER, is
able to retrieve AOD<inline-formula><mml:math id="M101" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>, AE<inline-formula><mml:math id="M102" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and SSA<inline-formula><mml:math id="M103" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> over the whole
globe every 2 d. The 2 d global coverage was based on the step of the
data assimilation set which estimates the emissions every 2 d. In
addition, the SUPER sensor is able to get aerosol observations even over cloudy
pixels and over very high latitudes.</p>
      <p id="d1e1854">The spatial coverage for a 2 d period for these two satellites is shown
in Fig. 3. Note that SUPER has a fixed number of
observations in time and space, while the number of SPEXone observations
fluctuates in time and space depending on cloud cover and orbit
characteristics. The total number of grid cell observations (each grid cell
includes an AOD<inline-formula><mml:math id="M104" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>, AE<inline-formula><mml:math id="M105" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and SSA<inline-formula><mml:math id="M106" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> value) assimilated for the
period 20 July to 20 September 2006​​​​​​​ is more than
double in SUPER (139 872) compared to SPEXone (61 086). The observations we are
using are super-observations, meaning that all the high-resolution SPEXone
observations were aggregated to the model resolution (1.875<inline-formula><mml:math id="M107" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M108" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.875<inline-formula><mml:math id="M109" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>). At the original resolution of SPEXone, our SUPER sensor
would provide approximately 6 times the observations. Note that in that
case these observations would be very closed together and highly spatially
correlated. In addition, with super-observations the swath of SPEXone appears
larger than 100 km, since only one high-resolution SPEXone resolution within
each grid box is needed to provide a value for the whole grid box of a size
1.875<inline-formula><mml:math id="M110" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M111" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.875<inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M113" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 250 km).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e1945">Red grid cells illustrate the 2 d spatial coverage of SUPER
and SPEXone instruments. SPEXone coverage is shown for the 17 and
18 August. In both cases the observation size is 1.875<inline-formula><mml:math id="M114" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M115" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.875<inline-formula><mml:math id="M116" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (super-observations) and includes estimates of AOD<inline-formula><mml:math id="M117" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>,
AE<inline-formula><mml:math id="M118" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and SSA<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f03.png"/>

        </fig>

      <p id="d1e2007">An instrument and retrieval simulator was used to generate estimates of
observational errors. Retrievals for 4 individual days were used for
this purpose. To be more specific, the estimated uncertainty is based on the difference
between the retrieved and the true values, following a similar method to that of
Tsikerdekis et al. (2021a). More details can be found in Appendix C.
Note that these observational uncertainties were used for both satellites
(SUPER and SPEXone).</p>
</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>Experimental setup</title>
      <p id="d1e2019">All of the experiments span 2 months in the summer of 2006 (20 July to
20 September 2006). This year and period was chosen based on our previous work
(Tsikerdekis et al., 2021a). Prior to this period the model
was spun up for 3 months (1 April to 1 July 2006), and the ensemble background
emissions were spun up for 20 d (1 July to 20 July 2006). We employ a grid
resolution T63L31 (1.875<inline-formula><mml:math id="M120" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M121" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.875<inline-formula><mml:math id="M122" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> , with 31
hybrid-sigma vertical layers concentrated in the troposphere).</p>
      <p id="d1e2047">There are a few LETKS parameters that can be adjusted. In this study we keep
these parameters fixed in all of our experiments. The description,
discussion, and sensitivity experiments of these parameters (ensemble size,
inflation local patch size, and the horizontal localization) was presented in
our preceding study (Tsikerdekis et al., 2021a). The data
assimilation ensemble size consists of 32 members. The local patch size and
the horizontal localization are set to eight and four grid cells, respectively,
while the inflation is set to 1. The inflation parameter is essentially
deactivated with the value equal to 1, since under the emissions estimation
setup of the data assimilation system the background uncertainty remains large
enough throughout the experiment for the data assimilation to work. The
local patch size is deliberately chosen to be high (8) in order to let
observations that are far away from the source (up to 15<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) impact
the emission estimation.</p>
      <p id="d1e2059">Table 2 shows the list of experiments related to
SPEXone. The experiment where the assimilated observations are based on the
SUPER spatiotemporal sampling is used mainly as a benchmark for the
performance of the experiments that use the SPEXone sampling. The
experiments where the assimilated observations use the SPEXone satellite
coverage intend to evaluate the added value provided by the SPEXone instrument's ability to estimate
emissions under different observational uncertainty and data assimilation
options. Specifically, the experiment SPX used the default errors estimated for SPEXone
retrievals (Appendix C). The experiment SPX_2U doubles the
uncertainty of the assimilated observations, and SPX_2URE
doubles the uncertainty and adds random errors (with standard deviation
equal to the observational uncertainty) to the assimilated observations.
Finally, SPX_W1 and SPX_W2 reduce the <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> length to 4 and 2 d respectively (from 6 d originally); hence,
fewer observations are used to derive the analysis emissions in each
assimilation cycle and only one and two assimilation cycles (instead of three) are
used to calculate the analysis emission perturbations. Consequently, the
data assimilation experiment is faster and less computationally expensive,
but fewer observations are used to obtain the analysis emission.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e2079">List of experiments related to SPEXone.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="1.5cm"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="2cm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="2.5cm"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="6cm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Experiments</oasis:entry>
         <oasis:entry colname="col2">Satellite <?xmltex \hack{\hfill\break}?>coverage</oasis:entry>
         <oasis:entry colname="col3">Satellite <?xmltex \hack{\hfill\break}?>uncertainty</oasis:entry>
         <oasis:entry colname="col4">Add random error<?xmltex \hack{\hfill\break}?>in observations</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Comments</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">CTL</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M127" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M128" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M129" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M130" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">No data assimilation</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SUP</oasis:entry>
         <oasis:entry colname="col2">SUPER</oasis:entry>
         <oasis:entry colname="col3">SPEXone</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M131" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">6, 2</oasis:entry>
         <oasis:entry colname="col6">Data assimilation based on SUPER sensor<?xmltex \hack{\hfill\break}?>(benchmark performance of the filter)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SPX</oasis:entry>
         <oasis:entry colname="col2">SPEXone</oasis:entry>
         <oasis:entry colname="col3">SPEXone</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M132" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">6, 2</oasis:entry>
         <oasis:entry colname="col6">Data assimilation based on SPEXone sensor</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SPX_2U</oasis:entry>
         <oasis:entry colname="col2">SPEXone</oasis:entry>
         <oasis:entry colname="col3">SPEXone <inline-formula><mml:math id="M133" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> 2</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M134" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">6, 2</oasis:entry>
         <oasis:entry colname="col6">Data assimilation based on SPEXone sensor<?xmltex \hack{\hfill\break}?>with double uncertainty</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SPX_2URE</oasis:entry>
         <oasis:entry colname="col2">SPEXone</oasis:entry>
         <oasis:entry colname="col3">SPEXone <inline-formula><mml:math id="M135" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> 2</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M136" display="inline"><mml:mi mathvariant="italic">✓</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">6, 2</oasis:entry>
         <oasis:entry colname="col6">Data assimilation based on SPEXone sensor<?xmltex \hack{\hfill\break}?>with double uncertainty and added random<?xmltex \hack{\hfill\break}?>errors to the observations</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SPX_W1</oasis:entry>
         <oasis:entry colname="col2">SPEXone</oasis:entry>
         <oasis:entry colname="col3">SPEXone</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M137" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">4, 2</oasis:entry>
         <oasis:entry colname="col6">Data assimilation based on SPEXone sensor<?xmltex \hack{\hfill\break}?>with shorter <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SPX_W2</oasis:entry>
         <oasis:entry colname="col2">SPEXone</oasis:entry>
         <oasis:entry colname="col3">SPEXone</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M139" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">2, 2</oasis:entry>
         <oasis:entry colname="col6">Data assimilation based on SPEXone sensor<?xmltex \hack{\hfill\break}?>with even shorter <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2413">Sensor SUPER is further used in other sensitivity experiments that aim to
assess issues related to the nature run complexity and development of the
data assimilation system (Table 3). The
SUP0_M experiment points out the degradation in emission
estimation purely due to biased wind by assimilating observation from
NAT_M. SUP_E assimilates observation from
NAT_E and shows that even under totally different emission
schemes and emission inventories between the nature run and the data
assimilation experiment, the emission errors are reduced.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><?xmltex \currentcnt{3}?><label>Table 3</label><caption><p id="d1e2419">List of experiments related to other uncertainty factors that can
affect emission estimation.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="2cm"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="3cm"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="6cm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Experiments</oasis:entry>
         <oasis:entry colname="col2">Assimilated <?xmltex \hack{\hfill\break}?>nature</oasis:entry>
         <oasis:entry colname="col3">Emission state vector</oasis:entry>
         <oasis:entry colname="col4">Prior correction</oasis:entry>
         <oasis:entry colname="col5">Comments</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SUP0</oasis:entry>
         <oasis:entry colname="col2">NAT</oasis:entry>
         <oasis:entry colname="col3">by species</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M141" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Tests the effect of prior correction</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SUP0_M</oasis:entry>
         <oasis:entry colname="col2">NAT_M</oasis:entry>
         <oasis:entry colname="col3">by species</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M142" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Tests the effect of biased meteorology</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SUP_E1</oasis:entry>
         <oasis:entry colname="col2">NAT_E</oasis:entry>
         <oasis:entry colname="col3">by species</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M143" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Tests the effect of realistic emission differences between nature and data assimilation runs</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SUP_E2</oasis:entry>
         <oasis:entry colname="col2">NAT_E</oasis:entry>
         <oasis:entry colname="col3">by species</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M144" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Tests the effect of realistic emission differences between nature and data assimilation runs and estimates emissions by mode for SS and DU</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SUP_E</oasis:entry>
         <oasis:entry colname="col2">NAT_E</oasis:entry>
         <oasis:entry colname="col3">by species and mode</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M145" display="inline"><mml:mi mathvariant="italic">✓</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Tests the effect of realistic emission differences between nature and data assimilation runs, estimates emissions by mode for SS and DU, and enables prior correction without the prior max flag</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS6">
  <label>3.6</label><title>Data assimilation initialization</title>
      <p id="d1e2587">The prior emissions may be overestimated or underestimated, and the smoother (<inline-formula><mml:math id="M146" display="inline"><mml:mo lspace="0mm">+</mml:mo></mml:math></inline-formula> prior correction) will take time to adjust them. The smoother's time window
of 6 d suggests that correct estimation of emissions does not happen
until a multiple of that number of days has passed. During this period, the
smoother is adjusting to the major biases present in the CTL emissions. We define this
period based on the results of our data assimilation experiment in order to exclude it from the evaluation that follows in Sect. 4.</p>
      <p id="d1e2597">Figure 4 shows that the differences between DAS and NAT (solid lines) reach
a value close to zero after 26 d. From that point until the end of the
experiment, these differences fluctuate around zero. For comparison the
emission differences of CTL–NAT (dashed lines) are also shown. Note that
the day-to-day dust and sea salt emission differences can fluctuate a lot
in CTL, but SUP is able to estimate them adequately.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e2602">Time series for emission fluxes differences between CTL–NAT and
SUP (DAS)–NAT for each species. The red line indicates where the
analysis emissions perturbations were estimated for the first time. Note
that SO<inline-formula><mml:math id="M147" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> direct emissions are only a small fraction (2.5 %) of
SO<inline-formula><mml:math id="M148" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emissions in ECHAM-HAM; hence, they are shown as a sum
SO<inline-formula><mml:math id="M149" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M150" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SO<inline-formula><mml:math id="M151" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in the plot.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f04.png"/>

        </fig>

      <p id="d1e2655">The duration of the initialization phase may be expected to be a multiple of
the longest of two timescales: the aerosol lifetime (that determines how
quickly aerosol are deposited) and the DA window (that determines how
quickly we can adjust emissions based on observations).</p>
      <p id="d1e2658">This is shown in Fig. 5, where after approximately
26 d the differences in aerosol optical properties and column burden
relative differences between DAS and NAT reach a value close to zero and
start fluctuating around this value until the end of the assimilation experiment.
Consequently, we choose the period of 26 d as the data assimilation
initialization period, and only the remaining 36 d, spanning from 15 August 20 September 2006, are evaluated in Sect. 4. Note that the data
assimilation initialization varies for each experiment depending on the
amount of the assimilated observations, the differences with nature run, and the assimilation options used. Nevertheless, 26 d is sufficient
as a data assimilation initialization period for all experiments (not
shown) (except SUP_E for SS emissions in the coarse mode);
thus, it is kept constant throughout the paper.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e2663">Time series of aerosol optical properties and column burden differences between CTL-NAT (dashed lines) and SUP (DAS)-NAT (solid lines). Column burden is depicted as relative differences. The vertical red line indicates when the analysis emissions perturbations were estimated for the first time, and the vertical purple line indicates when the plotted variables reach equilibrium with the analysis emissions. The period between the red and the purple lines indicates the lag time of the global aerosol burden's reaction to the analyzed emissions.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f05.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Results</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Emission estimation using SPEXone</title>
      <p id="d1e2688">The ability to estimate the true aerosol state using SPEXone is compared to
an experiment in which observations were assimilated based on a sensor like
SPEXone (meaning that it can retrieve the same type of observations with the
same accuracy) but with an almost perfect global coverage. In order to
understand the simulated aerosol state for the examined period, the aerosol
optical properties of the CTL experiment are shown and discussed in
Fig. 6. High AOD is evident over Sahara and
Arabian Peninsula mainly due to dust; over tropical forests (Amazon,
Africa, Indonesia) mainly due to organic and black carbon; and over Europe,
North America, and China mainly due to sulfates. AE is small over isolated
ocean areas that are dominated by sea salt and shows high values over land,
excluding desert areas where large dust particles prevail. High AAOD (low
SSA) highlights high black carbon concentrations, either from natural
(biomass burning) or anthropogenic (fossil fuel) sources, and intermediate
values over high sources of dust. Note that SSA (not AAOD) is the quantity
that is assimilated in our system (for details on the differences between SSA
and AAOD assimilation, see Tsikerdekis et al., 2021a), but AAOD is shown in the
plots since it is easier to interpret.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e2693">Aerosol optical properties for the CTL experiment. The mean stand for
the global mean value is shown and is estimated by averaging all the available grid cells.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f06.png"/>

        </fig>

      <p id="d1e2702">The ability of SPEXone and SUPER sensors to recreate the NAT are summarized in
Fig. 7, where the differences between the
experiments CTL, SUP, and SPX from NAT are depicted for AOD, AE, and AAOD. In
both data assimilation experiments the modeled aerosol is improved when
compared to the CTL experiment, and the global mean error (ME) and the
global mean absolute error (MAE) are almost zero. The ME and MAE equations can be
found in Appendix B of our preceding publication (Tsikerdekis
et al., 2021a). The performance of SPX is as good as the SUP, which suggests
that the spatial coverage of SPEXone is sufficient to constrain the
emissions in a similar fashion to the SUPER satellite.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e2708">Differences in aerosol optical properties of CTL–NAT <bold>(a, b, c)</bold>, SUP–NAT <bold>(d, e, f)</bold> and SPX–NAT <bold>(g, h, i)</bold>. The left column depicts AOD <bold>(a, d)</bold>, the middle
column depicts AE <bold>(b, e)</bold>, and the right column depicts AAOD <bold>(c, f)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f07.png"/>

        </fig>

      <p id="d1e2736">An important advantage of OSSEs is that we are able to evaluate the
estimated emissions of the data assimilation experiments with the emissions
of the nature run. Figures 8 and 9 depict the emission of aerosol species for
NAT and the emission differences for CTL, SUP, and SPX from NAT. In both data
assimilation experiments the estimated emissions are improved compared to
the emissions of the CTL. The overestimated dust emissions in the CTL are
constrained in the data assimilation experiments, and the ME is not close to
zero only in the western
part of the Sahara desert where emissions are high. For both data assimilation experiments the relative ME averaged for
the same region is lower than 10 % (not shown). The overestimated sea salt
emissions in CTL are constrained globally in both data assimilation
experiments, though in SPX the sea salt emission over the Indian Ocean shows
high ME with relative ME in some grid cells that exceeds 50 %. This is
caused by the limited observations by SPEXone due to cloudiness over India
and the surrounding seas (see Fig. B2). The ME and the
relative ME emission for organic and black carbon over high sources, mainly
over the tropics in South America, Africa, and Indonesia but also over
eastern China, reach almost zero in the data assimilation experiments.
Sulfates in the model are mainly produced from SO<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> precursor emissions,
and only a small fraction (2.5 %) of sulfates are directly emitted to the
atmosphere. For all other species (DU, SS, OC and BC) the assimilated
aerosol optical and microphysical observations directly constrain the
emission of the particles that form these observations in the atmosphere.
Despite that, the SO<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M154" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SO<inline-formula><mml:math id="M155" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> emissions are constrained reasonably
well, especially over high anthropogenic sources (North America, Europe,
India, and China), where the relative ME per grid cell does not exceed 10 % (not
shown) in both data assimilation experiments. These results suggest that
SPEXone limited observational coverage can estimate global aerosol emission
in a similar manner to a sensor that would have an almost perfect
observational coverage. However, it is noted that local error due to
cloudiness deteriorates the performance of SPEXone in comparison to SUPER.
Further, we assume that the 1.875<inline-formula><mml:math id="M156" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> aggregate of SPEXone contains a
non-significant representation error and that the observations of both sensors
are unbiased.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e2784">Aerosol emission fluxes (kg km<inline-formula><mml:math id="M157" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for NAT by
species: <bold>(a)</bold> DU, <bold>(b)</bold> SS, <bold>(c)</bold> OC, <bold>(d)</bold> BC, and <bold>(e)</bold> SO<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M160" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SO<inline-formula><mml:math id="M161" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>. The second
column depicts the differences between CTL and NAT.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f08.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e2860">The same as Fig. 8 but for the differences between SUP and NAT and
SPX and NAT.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f09.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Emission estimation using SPEXone – sensitivity experiments</title>
      <p id="d1e2877">A series of data assimilation experiments were conducted in order to explore
less optimistic (SPX_2U) scenarios for the SPEXone
retrievals and also to check what the effect is of adding actual noise
to the observations (SPX_2URE) instead of relying purely on
the uncertainty descriptions of the measurements. Further, we vary the
<inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> length (SPX_W1, SPX_W2) of
the data assimilation system. The differences of these two data assimilation
experiments from NAT for AOD, AE, and AAOD are depicted in
Fig. 10. In all cases the observations improve
compared to the CTL experiment (Fig. 7a–c),
although not to the extent of the default experiment SPX, which was discussed
in the previous subsection (Fig. 7g–i).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e2895">Differences in aerosol optical properties between SPX_2U and NAT <bold>(a, b, c)</bold> and SPX_2URE and NAT <bold>(d, e, f)</bold>. The left column depicts
AOD <bold>(a, d)</bold>, the middle column depicts AE <bold>(b, e)</bold>, and the right column depicts AAOD <bold>(c, f)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f10.png"/>

        </fig>

      <p id="d1e2919">Specifically, SPX_2U, where the assimilated observation
uncertainty was doubled, shows similar results for AOD and AE, whereas the AAOD
bias is increased slightly in comparison to SPX
(Fig. 10a–c). SPX_2URE, where the
assimilated observations uncertainty was doubled and random errors (with
standard deviation equal to the observational uncertainty) were added to the
assimilated observations, the bias increases over northeastern China for
AOD, over the Sahara, Arabian Peninsula, and northern Indian ocean for AE, and over
tropical Africa and the Amazon basin for AAOD (Fig. 10d–f). We can quantify the effect of an observation's random error on
emission estimations by comparing the experiments SPX_2U and
SPX_2URE. The data assimilation performance does not degrade
significantly when taking into account random errors in the assimilated
observations. Specifically the dust emission global MAE increases by 5
percentage points due to random errors, while for other species the increase is
even lower (Fig. 13).</p>
      <p id="d1e2923">SPX_W1 and SPX_W2 reduce the <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
length to 4 and 2 d (from 6); hence, fewer observations are used to derive
the analysis emissions in each assimilation cycle, and only one and two
assimilation cycles (instead of three) are used to calculate the analysis
emission perturbations. The results reveal that <inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> d
(SPX_W1) is sufficient to constrain the AOD, AE, and AAOD in a
similar manner to <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> d (SPX)
(Fig. 11a, b, c). In other words, under the current
experimental setup, observations 5 to 6 d after the emissions probably
hold very little information for the correction of these emissions, and
their exclusion has a very limited impact on the data assimilation
performance. In contrast, the experiment SPX_W2 shows a
degradation in performance over the western Sahara and northern Atlantic for AOD
and AE (Fig. 11d, e, f), indicating that
observations during the subsequent days 3 and 4 hold useful information for the
correct estimation of emissions at day 1 and 2, as will be discussed below. Note that SPX_W1 and SPX_W2 need
<inline-formula><mml:math id="M166" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 33 % and <inline-formula><mml:math id="M167" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 66 % fewer computational
resources than SPX, respectively, since the background step in each
assimilation cycle is shorter.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><?xmltex \def\figurename{Figure}?><label>Figure 11</label><caption><p id="d1e2989">Differences in aerosol optical properties between SPX_W1 and NAT <bold>(a, b, c)</bold> and SPX_W2 and NAT <bold>(d, e, f)</bold>. The left column depicts
AOD <bold>(a, d)</bold>, the middle column depicts AE <bold>(b, e)</bold>, and the right column depicts AAOD <bold>(c, f)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f11.png"/>

        </fig>

      <p id="d1e3013">Figure 12 shows the mean and standard deviation of
errors per grid cell. These errors are averages for the evaluation period of
the difference between an experiment (CTL or DAS) and NAT. Both SUP and SPX
errors are significantly smaller than CTL in both global (mean) and local
errors (spread). The global AOD MAE of SPX_2U and
SPEX_2URE remains very low, while AE and AAOD global ME
slightly increase. Note that SPEXone AOD uncertainty range (Appendix C) is
very low (lower than 10 % over ocean and 15 % on average over land), and
doubling this uncertainty only has a limited effect on the analysis. On the
other hand, the uncertainty in AE and SSA observations is higher than AOD;
hence, the data assimilation performance is affected to a larger extent.
Overall, it can be concluded that in these less optimistic assessments (doubled
uncertainty), the assimilated observations based on SPEXone spatial coverage
are still able to estimate the emissions with reasonable accuracy. Further,
the experiment where actual noise is added to the measurements shows similar
results to the experiment where no noise was added. This illustrates that
the system is not “overfitting” the observations but takes the specified
uncertainty correctly into account even when there is no noise added to the
measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><?xmltex \def\figurename{Figure}?><label>Figure 12</label><caption><p id="d1e3018">Global mean differences between CTL and several data assimilation
experiments from NAT. Information in parentheses indicates the global mean relative
difference. The error bar indicates the standard deviation of differences by
grid for the whole globe. A larger (smaller) error bar indicates that local
differences are higher (lower).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f12.png"/>

        </fig>

      <p id="d1e3027">In terms of estimated emissions, the four sensitivity experiments rank a bit
lower in comparison to both SUP and SPX, as indicated in
Fig. 13, where the global relative MAE for various
species is shown. Specifically, SPX has similar emission errors to SUP but
differs in the SS-estimated emission, which is caused by the limited
observations in SPEXone due to cloudiness over India and surrounding seas
(see Fig. B2), as discussed in the previous
subsection. SPX_2U and SPX_2URE emission
biases for all species are increased by no more than 10 percentage points in
comparison to SPX, which indicates that increased (double) uncertainty and
adding random errors in the observations has a small but noticeable negative
effect on the global relative differences in the emissions. Finally,
SPX_W1 emission bias increases by no more than 6 percentage points
in comparison to SPX in all species. However, dust emission error grows to
54 % in SPX_W2 from 17 % in SPX_W1,
indicating that the information content of observations 3 and 4 d after
the emissions is very rich and should be used to correct these emissions,
especially for Saharan dust plumes that extend over the Atlantic Ocean and
last for several days. The emissions of OC, BC, and SO<inline-formula><mml:math id="M168" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M169" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SO<inline-formula><mml:math id="M170" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> are
estimated very accurately by all of the data assimilation experiments, with
relative MAE ranging from 0 % to 5 %, which indicates that, in terms of
the global mean emission estimation, these emissions are unaffected by the
sensor spatial coverages and observational uncertainty increases that were
tested. The global maps of emission differences from NAT for the four
sensitivity experiments of these subsection are shown in Fig. S1.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><?xmltex \currentcnt{13}?><?xmltex \def\figurename{Figure}?><label>Figure 13</label><caption><p id="d1e3058">Global relative MAE (%) of species-specific emission fluxes
for several experiments.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f13.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>Other sources of uncertainty for emission estimation</title>
      <p id="d1e3075">OSSEs also allow us to quantify the uncertainty due to assumptions in
nudging meteorology or emission source locations. The first relates to the
assumption that the meteorological parts of the model and specifically the
wind components (<inline-formula><mml:math id="M171" display="inline"><mml:mi>U</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M172" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula>) are perfect. The second factor relates to complex
spatiotemporal change of aerosol emission in the nature run compare to the
data assimilation run and test if the system is able to estimate the correct
emissions when the data assimilation and nature runs emissions differ by more than just an emission factor (per species) that is constant in time and space.</p>
<sec id="Ch1.S4.SS3.SSS1">
  <label>4.3.1</label><title>The effect of biased meteorology</title>
      <p id="d1e3099">The OSSEs in previous subsections implicitly assumed that the data
assimilation experiment would have perfect knowledge of the NAT meteorology.
Since even reanalysis datasets of wind speeds have errors, we test their
impact here. Simulations that were nudged to different reanalysis datasets (e.g.,
ERA-Interim and ERA-5) reveal very dissimilar results in terms of AOD, AE,
and SSA for specific regions (Fig. 14g, h, i).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><?xmltex \def\figurename{Figure}?><label>Figure 14</label><caption><p id="d1e3104">Differences in aerosol optical properties between CTL and NAT_M <bold>(a, b, c)</bold>, SUP_M and NAT_M
<bold>(d, e, f)</bold>, and NAT and NAT_M <bold>(g, h, i)</bold>. The left column depicts AOD
<bold>(a, d, g)</bold>, the middle column depicts AE <bold>(b, e, h)</bold>, and the right column depicts AAOD <bold>(c, f, i)</bold>. Note that
the differences in the bottom row indicate changes in aerosol optical
properties that are solely due to different meteorology.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f14.png"/>

          </fig>

      <p id="d1e3132">In this subsection we explore the effect of biased meteorology in the
aerosol emission estimation by nudging the wind components of the nature run
(NAT_M) to ERA-Interim and the wind components of the data
assimilation (SUP0_M) experiment to ERA-5. The sampled
observations of NAT_M are based on the SUPER sensor; hence,
the observational coverage is optimal in space and continuous in time. Note
that the emissions of NAT_M are scaled with the same scale
factor as NAT (Table 1). Further, prior correction
is not used in SUP0_M.</p>
      <p id="d1e3136">The evaluation of SUP0_M modeled aerosol against
NAT_M reveals high errors in some regions
(Fig. 14d, e, f). Unsurprisingly, AOD differences
between SUP0_M and NAT_M and NAT and NAT_M shown in Fig. 14 display striking
similarities for subtropical and tropical Africa and the Atlantic
Ocean, as well as over East China Sea and Philippine Sea, which suggests
that the remaining aerosol biases on SUP0_M are mostly
related to the biased meteorology that affects aerosol transport paths.</p>
      <p id="d1e3139">In terms of the estimated emissions, SS is negatively affected the most by
the effect of biased meteorology. Figure 15 shows
that the relative MAE in SS emissions increases by 24 percentage points in
SUP0_M (42 %) compared to SUP0 (18 %), while the estimated
emissions of DU, OC, BC, and SO<inline-formula><mml:math id="M173" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M174" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SO<inline-formula><mml:math id="M175" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> are negatively affected by
the effect of biased meteorology to a smaller extent (<inline-formula><mml:math id="M176" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 10 %). In addition, the comparison of the two grey bars, CTL (NAT) and CTL
(NAT_M), shows that the different meteorology significantly changes
the DU emissions and to a lesser extent the SS emissions. Note
that regional error (estimated for each grid cell) can be higher than what
is indicated in Fig. 15. The global map emission
differences between CTL and NAT_M, SUP0_M and NAT_M, and NAT and NAT_M are shown in (Fig. S2).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15" specific-use="star"><?xmltex \currentcnt{15}?><?xmltex \def\figurename{Figure}?><label>Figure 15</label><caption><p id="d1e3176">Global relative MAE (%) of species-specific emission fluxes
for several experiments. The information in parentheses indicates the nature run, which is
used as a reference in each case.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f15.png"/>

          </fig>

      <p id="d1e3185">Transport deviations (vertically and horizontally) between ERA-5 and
ERA-Interim were assessed using Lagrangian transport simulations by
Hoffmann et al. (2019). In that study differences of
Lagrangian simulations based on the two reanalysis products were up to 2 to
3 orders of magnitude compared to differences caused by parameterized
diffusion and subgrid-scale wind fluctuation after 10 d. Some of the main
simulation improvements of ERA-5 compared to ERA-Interim are its higher
spatial (31 km) and temporal (hourly analysis) resolution as well as its
4D-Var uncertainty estimate, which comes from a 10-member ensemble of data
assimilation in a coarser resolution (63 km). Considering the improvements of
ERA-5 compared to its predecessor, we assume that the aerosol differences
(Fig. 14g, h, i) caused by nudging ECHAM-HAM to
ERA-5 or ERA-interim represent a worst-case scenario and that the differences
between ERA-5 and the real wind are not greater than that scenario.</p>
</sec>
<sec id="Ch1.S4.SS3.SSS2">
  <label>4.3.2</label><title>The effect of using different emission inventories between the nature and
data assimilation runs</title>
      <p id="d1e3196">Our nature run (NAT) has emissions that are simply scaled for the different
species compared to the control and data assimilation runs. To investigate
whether this scaling represents a too simple difference between nature and
data assimilation run, we conduct OSSEs with a new nature run
(NAT_E). In this new nature run we change the emission
inventories and emission schemes (Table 1) compared
to the control and data assimilation runs. This creates a more realistic
emission differences between NAT_E and CTL that fluctuate in
time and space. The CTL to NAT_E differences in
Fig. 16 illustrate an overestimation of AOD and
AAOD over the tropics in South America and Africa. An underestimation of AOD
is apparent in Southeast Asia and over the deserts in the western Sahara and
Taklamakan. In addition, a strong global overestimation (0.46) of AE, mainly
over the ocean, is observed due to a high amount of SS coarse particles
emitted by the scheme selected in NAT_E.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16" specific-use="star"><?xmltex \currentcnt{16}?><?xmltex \def\figurename{Figure}?><label>Figure 16</label><caption><p id="d1e3201">Differences in aerosol optical properties between CTL and NAT_E <bold>(a, b, c)</bold> and SUP_E and NAT_E <bold>(d, e, f)</bold>. The left column depicts AOD <bold>(a, d)</bold>, the middle column depicts AE <bold>(b, e)</bold>, and the right
column depicts AAOD <bold>(c, f)</bold>.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f16.png"/>

          </fig>

      <p id="d1e3225">In a new assimilation experiment (SUP_E) we used some new
options. Emission estimation was conducted by mode and not only by species
(separately for accumulation and coarse) for the SS and DU aerosol species.
In addition, prior correction was used (without the prior max option). Both
of these changes were introduced for the SUP_E experiment in
order to create more variation in AE and let emissions of SS in the coarse
mode match those in NAT_E, which are much higher than the
background uncertainty for midlatitudes and high latitudes. Results of the data
assimilation experiments, where we applied these two changes one at a time,
are shown in Fig. S3.</p>
      <p id="d1e3229">In SUP_E, we perform a data assimilation experiment using the
CTL baseline prior emissions with observations drawn from NAT_E. The data assimilation system was able to adjust model emissions in order
to match the observations of NAT_E. Specifically, the global
ME for SUP_E is zero for AOD and AAOD, while AE global ME is
reduced from 0.46 to 0.11 (Fig. 16), with the
highest local errors still persisting over high latitudes (Fig. S4 and
explanation in caption).</p>
      <p id="d1e3232">The global relative MAEs for emissions are depicted by species in
Fig. 17 for SUP_E and CTL. The
emission errors of SUP_E for all species are reduced or
remain almost unchanged (SO<inline-formula><mml:math id="M177" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M178" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SO<inline-formula><mml:math id="M179" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) compared to CTL. Although
NAT_E uses very different emission inventories compared to
SUP_E, the data assimilation system accurately fits the
measurements and estimated (most) emissions correctly. The emission
differences maps per species between CTL and NAT_E and
SUP_E and NAT_E are depicted Fig. S5.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F17" specific-use="star"><?xmltex \currentcnt{17}?><?xmltex \def\figurename{Figure}?><label>Figure 17</label><caption><p id="d1e3262">Global relative MAE (%) of species-specific emission fluxes
for several experiments. The information in parentheses indicates the nature run, which is
used as a reference in each case. Note that statistics were calculated for
sources that are active on NAT_E.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f17.png"/>

          </fig>

      <p id="d1e3271">We focus on the Sahara region and the estimated DU emissions to highlight an
important issue of any data assimilation system for emission estimation.
Figure 18 depicts the dust emission fluxes over the
western Sahara for the NAT_E, CTL, and SUP_E.
Although the dust emission fields are similar, the spatial distribution of
the dust sources differs. There are some grid cells where dust emissions are
zero (not considered as sources by the model) in the control and the data
assimilation experiment (highlighted with the red polygon at
Fig. 18d), while the same locations are active
sources in the nature run. These differences are caused by the setup of
each dust scheme, where the preferential dust sources can differ
(Schepanski et al., 2007). These
contrasting assumptions can negatively impact the estimated emissions, since
our data assimilation setup adjusts existing sources and does not introduce
new sources. Dust emission differences between CTL and NAT_E
(Fig. 18d) show an underestimation over these
grid cells and the surrounding area in question. Differences between SUP_E and NAT_E (Fig. 18e) reveal that dust
emissions remained underestimated over the same grid cells but that the
surrounding emissions (especially westward) were increased (overestimated)
to compensate for the lack of dust in the area. Hence, the data assimilation
system not only underestimated these specific grid cells but ended up
overestimating all of the surrounding area as well in order to compensate for
the missing aerosol in the atmosphere. On the other hand, for emissions in areas
where the location of preferential dust emission sources is the same, data
assimilation did not have a problem estimating the correct emissions
(highlighted with the orange polygon at Fig. 18c).
These examples show that it is possible for a data assimilation system to
reduce source strengths in the model, whereas it is not possible (under the current
dust scheme and data assimilation setup) to start emitting dust in grid
cells specified as non-sources. Consequently, dust schemes with spatially
broader and continuous sources may provide a more flexible way to adjust the
emissions based on observations. Note that although these examples reside in
the modeling world of an OSSE, the same problem can affect the dust
emission estimation of non-OSSE data assimilation studies since source
location in models can differ from the source location in nature.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F18" specific-use="star"><?xmltex \currentcnt{18}?><?xmltex \def\figurename{Figure}?><label>Figure 18</label><caption><p id="d1e3276">Dust emission fluxes (kg km<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M181" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for <bold>(a)</bold> the
NAT_E, <bold>(b)</bold> the CTL, and <bold>(c)</bold> the SUP_E. The
differences between CTL and NAT_E and SUP_E and NAT_E are depicted in panels <bold>(d)</bold> and <bold>(e)</bold>, respectively. Note
that NAT_E uses a different dust scheme than CTL and
SUP_E, hence the location where dust can be emitted differs.
In subplot <bold>(d)</bold>, blue and red boxes highlight regions where dust emissions
are overestimated and underestimated, respectively, in CTL compared to
NAT_E. In the first case the data assimilation can modify the
emissions and correct the overestimation, while in the second case it cannot
(details in the Sect. 4.3.2).</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f18.png"/>

          </fig>

</sec>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e3339">In this study we have quantified SPEXone ability to estimate aerosol
emissions using a fixed-lag ensemble Kalman smoother (LETKS) in combination
with the ECHAM-HAM aerosol–climate model. SPEXone is a passive remote
sensing multi-angle polarimeter part of the NASA PACE missions scheduled to
be launched in 2023. The system is tested using observing system simulation
experiments where the nature run is created by an ECHAM-HAM simulation with
altered aerosol emissions from the standard model setup. Synthetic
observations of aerosol optical depth, Ångström exponent, and single-scattering albedo are sampled from this nature run according to the
spatiotemporal coverage of SPEXone or a theoretical sensor with almost
perfect global coverage.</p>
      <p id="d1e3342">The data assimilation experiments based on SPEXone or the theoretical sensor
provide similar results in terms of the estimated emissions and the
simulated observations, which is very encouraging since it shows that
spatially limited SPEXone observational coverage will be able to constrain
emissions almost as well as the theoretical satellite setup. Note that we
assume that the 1.875<inline-formula><mml:math id="M182" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> aggregate of SPEXone contains a non-significant
representation error, the observations of both sensors are unbiased, and the
differences in observations of the nature run and the data assimilation run
are only caused by differences in emissions. We address most of these
assumptions by conducting additional experiments.</p>
      <p id="d1e3354">Specifically, the initial global prior emissions errors in the control run
that ranged from 33 % to 117 % (depending on the species) drop to a
range of 0 % to 5 % for the theoretical sensor and 0 % to 11 % for
SPEXone. The highest difference between the two sensors is observed on the
SS-estimated emissions mainly due to the lack of observations for SPEXone
over India caused by cloudy conditions. An observational uncertainty
scenario for SPEXone that doubles the uncertainty of the assimilated
observations leads to reasonably good emission estimates. Further, we show
the information of observations on days 5 and 6 after emission is not that
important for the estimation of emissions (for all species), but the
information of observations on days 3 and 4 after dust emissions is very
important and should be used for the estimation of dust emissions. Note
that in all of these experiments the nature run was created using the same
model and the same physics options as the data assimilation run, with their only
difference being that the emissions of the nature run were multiplied with
emission factors that are globally constant and distinct for each aerosol species.
Hence, the results of these data assimilation experiments may be too
optimistic, since they do not account for any other uncertainty factor that
would affect emissions estimation (e.g., meteorology biases, complexity in
emission sources) in reality.</p>
      <p id="d1e3357">Therefore, additional experiments were conducted using the theoretical
sensor in order to quantify the impact of other uncertainty factors that can
affect the estimation of aerosol emissions. The role of biased meteorology
is tested by nudging the wind components of the nature run to ERA-interim
and the data assimilation run to ERA-5. Biased meteorology mostly increases
global error in sea salt emissions in comparison to the data assimilation
experiment where meteorology was not biased. The estimated emissions of the
other species are negatively affected to a smaller extent.</p>
      <p id="d1e3361">Further, to investigate whether the creation of a nature run with emission
scaling represents a too simple difference between nature and data
assimilation run, an experiment where emissions in a new nature run are
altered by changing the emission inventories and emission schemes. Data
assimilation successfully reduced the global emission errors of all species,
with the exception of dust at some locations. Dust emission errors are not reduced
because the preferential dust sources of the nature run are greater compared to
the data assimilation run. This complicates the emission estimation since
dust is emitted from different locations in the nature run and the data
assimilation run. Specifically, in the western Sahara data assimilation
increases dust emission extensively in its available dust sources based on
the assimilated observations (sampled from the nature run) in order to
compensate for the lack of dust that originated from dust sources only
available in the nature run. This OSSE demonstrates that a data assimilation
system may not provide the desirable results in cases where the locations of
emission sources are more sparse than nature.</p>
      <p id="d1e3364">This work highlights that the upcoming SPEXone sensor will provide high-accuracy observations with sufficient coverage that contains information
about the mass, size, and absorption of the aerosol particles in order to
estimate aerosol emission accurately using our data assimilation system.
Using the full observational information of the PACE mission (SPEXone,
HARP-2 and OCI), as well as using more retrieved aerosol properties
(effective radius, refractive index), can potentially provide even better
results.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>The effect of prior correction</title>
      <p id="d1e3378">The Kalman filter assumes that the emissions do not have persistent errors
or, in other words, that the emissions are not constantly biased (low or high)
in time. Unfortunately, emissions in models can be biased; hence, we developed
a prior correction method to account for this phenomenon. The effect of prior
correction is tested by comparing the performance of the experiments with
(SUP) and without (SUP0) prior correction. The simulated aerosols in the
SUP0 experiment become almost identical to NAT, although a small bias
remained in all variables (Fig. A1). This is due
to the setup of our OSSE, where the prior emissions of all the species are
biased either low or high in comparison to NAT. In other words, although the
uncertainty of prior emissions describe the prior emission errors well, the
biased prior ensemble mean has a small toll on data assimilation
performance. With prior correction (SUP) this issue is resolved, and we get a
better fit to the observations for all variables as shown in
Fig. A1. The global error of the estimated
emission is improved due to prior correction by 18 % for SS and by up to
7 % for the other species (not shown). Although the effect of prior
correction is small for SUP and SUP0, in the case where the prior emissions
error differs a lot from the uncertainty of prior emissions, the effect of
prior correction would be much more significant, since it will adjust the
ensemble mean of the emission perturbations and correct the bias of the
model. An example of this is presented in Sect. 4.3.2 for the estimate
of SS emissions.</p>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S1.F19"><?xmltex \currentcnt{A1}?><?xmltex \def\figurename{Figure}?><label>Figure A1</label><caption><p id="d1e3383">AOD<inline-formula><mml:math id="M183" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> <bold>(a)</bold>, AE<inline-formula><mml:math id="M184" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula> <bold>(b)</bold>, and AAOD<inline-formula><mml:math id="M185" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> <bold>(c)</bold>
scatterplot for the NAT, SUP, and SUP0 experiments. Each point represents a
3-hourly global mean. ME stands for mean error, MAE stands for mean absolute error and <inline-formula><mml:math id="M186" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> represents the
Pearson's correlation. The shaded areas represents the 2D kernel density
estimation for each experiment.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f19.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<app id="App1.Ch1.S2">
  <?xmltex \currentcnt{B}?><label>Appendix B</label><title>SPEXone coverage based on a realistic ECHAM-HAM cloud mask</title>
      <p id="d1e3448">We want a realistic cloud mask that is nevertheless determined from the
ECHAM cloud mask. The way we achieve this is by setting an ECHAM cloud
fraction threshold for all the grid cells that coincide with the cloud-free
SPEXone spatiotemporal coverage. When ECHAM cloud fraction of a grid cell is
lower than the cloud fraction threshold, we assume that at least some
observations could be retrieved over the cloud-free part of that grid cell.
In order to make our results more realistic, we further change the cloud
fraction threshold in each grid cell (in a statistical sense, by random
draws) to make it appear more like MODIS cloud mask.</p>
      <p id="d1e3451">Specifically, the grid cells of the cloud-free SPEXone mask were filtered
out based on ECHAM cloud fraction greater than 0.7 (ECHAM-CloudMask1 red
points in Fig. B1). Although ECHAM and MODIS
cloud-based SPEXone masks almost matched in the total number of
observations, they differed in the latitudinal and temporal distribution of
observations (especially at high latitudes and the subtropics) (black and red
points in Fig. B1). Thus, we allowed the 0.7 cloud
fraction threshold to change depending on how much the ECHAM and MODIS
cloud-based SPEXone masks differ per latitude and time. This resulted in a
SPEXone mask based on ECHAM cloud fraction but with the more realistic
sampling that MODIS provides, specifically regarding time (ECHAM-CloudMask2 blue
points in Fig. B1). The total number of
observations retrieved by SPEXone based on MODIS and ECHAM cloud masks is
depicted in Fig. B2.</p><?xmltex \hack{\clearpage}?><?xmltex \floatpos{h!}?><fig id="App1.Ch1.S2.F20"><?xmltex \currentcnt{B1}?><?xmltex \def\figurename{Figure}?><label>Figure B1</label><caption><p id="d1e3456">Number of observations by latitude, longitude, and time for the
SPEXone mask based on MODIS cloudiness (black; MODIS-CloudMask), ECHAM cloud
fraction <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">0.7</mml:mn></mml:mrow></mml:math></inline-formula> (red; ECHAM-CloudMask0), and ECHAM cloud fraction
hybrid method explained in text (blue; ECHAM-CloudMask). The total number of
observations for each mask is 88 731 for MODIS-CloudMask, 88 005 for
ECHAM-CloudMask0, and 88 886 for ECHAM-CloudMask. The analysis refers to the
period from 2 July to 1 October.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f20.png"/>

      </fig>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S2.F21"><?xmltex \currentcnt{B2}?><?xmltex \def\figurename{Figure}?><label>Figure B2</label><caption><p id="d1e3480">Number of observations for the MODIS and ECHAM-HAM cloud-based
SPEXone masks. Each gridded observation includes an AOD<inline-formula><mml:math id="M188" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>,
AE<inline-formula><mml:math id="M189" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and SSA<inline-formula><mml:math id="M190" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> measurement. The analysis refers to the
period from 2 July to 1 October.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f21.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<app id="App1.Ch1.S3">
  <?xmltex \currentcnt{C}?><label>Appendix C</label><title>Observation uncertainty</title>
      <p id="d1e3528">We need to estimate the observational uncertainty for SPEXone, which is a
sensor that is not yet launched. The retrievals errors of SPEXone are
simulated as in Hasekamp
et al. (2019a). The uncertainty of the retrieved parameters are propagations
of uncertainties in both measured radiance (and DoLP) and the prior of the
retrieved parameters.</p>
      <p id="d1e3531">Based on synthetic retrievals performed globally for 4 individual days,
the standard deviation of the differences between the truth and the
retrieved values were calculated for several AOD<inline-formula><mml:math id="M191" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> classes. The
results for AOD<inline-formula><mml:math id="M192" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>, AE<inline-formula><mml:math id="M193" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and SSA<inline-formula><mml:math id="M194" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> are shown in
Fig. C1. Note that relative differences were used
for AOD<inline-formula><mml:math id="M195" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> and that absolute differences were used for AE<inline-formula><mml:math id="M196" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula> and SSA<inline-formula><mml:math id="M197" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>.
For high AOD<inline-formula><mml:math id="M198" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> cases where few retrievals were available, the
uncertainty was also calculated for AOD<inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1.6</mml:mn></mml:mrow></mml:math></inline-formula> over land and
AOD<inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">0.8</mml:mn></mml:mrow></mml:math></inline-formula> over ocean to ensure that more than 50 cases
were used in each instance.</p>
      <p id="d1e3635">Retrievals over land have higher uncertainty than retrievals over ocean for
almost all AOD<inline-formula><mml:math id="M201" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> bands in all variables. In addition, retrievals for
AOD<inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> have lower uncertainty than AOD<inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>. The standard deviation of these relative and absolute
differences for each AOD<inline-formula><mml:math id="M204" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> band were used to define the uncertainty
of the assimilated observations for both the SUPER and SPEXone satellites.
For example, the uncertainty for the AOD<inline-formula><mml:math id="M205" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> band from 0.80 to 1.00 over land
is 16.6 % for AOD<inline-formula><mml:math id="M206" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>, 0.362 for AE<inline-formula><mml:math id="M207" display="inline"><mml:msub><mml:mi/><mml:mtext>550–865</mml:mtext></mml:msub></mml:math></inline-formula>, and 0.021 for
SSA<inline-formula><mml:math id="M208" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula>.</p><?xmltex \hack{\clearpage}?><?xmltex \floatpos{h!}?><fig id="App1.Ch1.S3.F22"><?xmltex \currentcnt{C1}?><?xmltex \def\figurename{Figure}?><label>Figure C1</label><caption><p id="d1e3724">Defined uncertainty of SPEXone observations. Each point
represents the standard deviation of the differences between truth and retrieved values for a specified AOD<inline-formula><mml:math id="M209" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> band. The analysis was carried out
separately for retrievals over land and ocean. Bars depict the number of
SPEXone retrievals for each AOD<inline-formula><mml:math id="M210" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">550</mml:mn></mml:msub></mml:math></inline-formula> classes, and their height is
associated with the right vertical axis.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/3253/2022/gmd-15-3253-2022-f22.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e3759">The model simulations and the SPEXone simulated retrievals are available from Zenodo at
the following link: <uri>https://zenodo.org/record/5902137#.YfE4dPXMJ-U</uri> (last access: 20 April 2022; Tsikerdekis et al., 2022)​​​​​​​. The data assimilation
software for aerosol emission estimation in ECHAM-HAM are available from
Zenodo at
the following link: <uri>https://doi.org/10.5281/zenodo.5596328</uri> (Tsikerdekis et al., 2021b). The ECHAM-HAM
version that was used in this study can be found in the following repository:
<uri>https://svn.iac.ethz.ch/external/echam-hammoz/echam6-hammoz/branches/uni_amsterdam_vrije/</uri> (last access: 8 April 2022​​​​​​​). This repository can be accessed after registration at
<uri>https://redmine.hammoz.ethz.ch/projects/hammoz</uri> (Hammoz, 2022​​​​​​​). ERA-interim and
ERA-5 data are freely available from <ext-link xlink:href="https://doi.org/10.24381/cds.bd0915c6" ext-link-type="DOI">10.24381/cds.bd0915c6</ext-link> (Hersbach et al., 2022) after registration.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e3777">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/gmd-15-3253-2022-supplement" xlink:title="pdf">https://doi.org/10.5194/gmd-15-3253-2022-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e3786">AT designed the experiments with the help of NAJS and OPH and carried them
out. GF prepared SPEXone-simulated retrievals. AT performed the analysis and
prepared the manuscript with contributions from all co-authors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e3792">The contact author has declared that neither they nor their co-authors have any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e3798">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3804">This work was carried out on the Dutch national e-infrastructure with the
support of SURF Cooperative.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e3809">This research has been supported by the Dutch Research Council (NWO) and
Netherlands Space Office (NSO) (grant no. 2017.008). Athanasios Tsikerdekis
is funded by a NWO/NSO project “AEROSOURCE: Estimation of Aerosol Emissions
from Polarization Data” (grant no. ALWGO.2017.008).​​​​​​​</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e3815">This paper was edited by Samuel Remy and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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