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  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-15-2673-2022</article-id><title-group><article-title>Simulation of organics in the atmosphere: evaluation of EMACv2.54 with the Mainz Organic Mechanism (MOM) coupled to the ORACLE (v1.0) submodel</article-title><alt-title>MOM evaluation with EMAC</alt-title>
      </title-group><?xmltex \runningtitle{MOM evaluation with EMAC}?><?xmltex \runningauthor{A.~Pozzer et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Pozzer</surname><given-names>Andrea</given-names></name>
          <email>andrea.pozzer@mpic.de</email>
        <ext-link>https://orcid.org/0000-0003-2440-6104</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Reifenberg</surname><given-names>Simon F.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Kumar</surname><given-names>Vinod</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8405-3470</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Franco</surname><given-names>Bruno</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0736-458X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Kohl</surname><given-names>Matthias</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Taraborrelli</surname><given-names>Domenico</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2213-6307</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Gromov</surname><given-names>Sergey</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2542-3005</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff11">
          <name><surname>Ehrhart</surname><given-names>Sebastian</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6517-5341</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Jöckel</surname><given-names>Patrick</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8964-1394</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Sander</surname><given-names>Rolf</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6479-2092</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Fall</surname><given-names>Veronica</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Rosanka</surname><given-names>Simon</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5929-163X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Karydis</surname><given-names>Vlassis</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1616-9746</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Akritidis</surname><given-names>Dimitris</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3104-5271</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Emmerichs</surname><given-names>Tamara</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0165-9574</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Crippa</surname><given-names>Monica</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Guizzardi</surname><given-names>Diego</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Kaiser</surname><given-names>Johannes W.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3696-9123</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Clarisse</surname><given-names>Lieven</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8805-2141</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Kiendler-Scharr</surname><given-names>Astrid</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3166-2253</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Tost</surname><given-names>Holger</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3105-4306</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff10">
          <name><surname>Tsimpidi</surname><given-names>Alexandra</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Atmospheric Chemistry Department, Max Planck Institute for Chemistry, Mainz, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution> Spectroscopy, Quantum Chemistry and Atmospheric Remote Sensing (SQUARES), Université libre de Bruxelles (ULB), Brussels, Belgium</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institute of Energy and Climate Research, IEK-8: Troposphere, Forschungszentrum Jülich GmbH, Jülich, Germany</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Institut für Physik der Atmosphäre, Deutsches Zentrum für Luft- und Raumfahrt (DLR), Oberpfaffenhofen, Germany</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Illinois–Indiana Sea Grant, University of Illinois, Champaign, IL, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Department of Meteorology and Climatology, School of Geology, Aristotle University of Thessaloniki, Thessaloniki, Greece</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>European Commission Joint Research Centre, Ispra (VA), Italy</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Satellite-based Climate Monitoring Unit, Deutscher Wetterdienst (DWD), Offenbach am Main, Germany</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>Institute for Atmospheric Physics, Johannes Gutenberg University, Mainz, Germany</institution>
        </aff>
        <aff id="aff10"><label>10</label><institution>Institute for Environmental Research and Sustainable
Development, National Observatory of Athens, Athens, Greece</institution>
        </aff>
        <aff id="aff11"><label>a</label><institution>now at: Marine Research Centre, Finnish Environment Institute (SYKE), Helsinki, Finland </institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Andrea Pozzer (andrea.pozzer@mpic.de)</corresp></author-notes><pub-date><day>1</day><month>April</month><year>2022</year></pub-date>
      
      <volume>15</volume>
      <issue>6</issue>
      <fpage>2673</fpage><lpage>2710</lpage>
      <history>
        <date date-type="received"><day>27</day><month>August</month><year>2021</year></date>
           <date date-type="rev-request"><day>29</day><month>September</month><year>2021</year></date>
           <date date-type="rev-recd"><day>11</day><month>January</month><year>2022</year></date>
           <date date-type="accepted"><day>3</day><month>February</month><year>2022</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2022 Andrea Pozzer et al.</copyright-statement>
        <copyright-year>2022</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022.html">This article is available from https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e343">An updated and expanded representation of organics in the chemistry general circulation model EMAC
(ECHAM5/MESSy for Atmospheric Chemistry) has been evaluated. First, the
comprehensive Mainz Organic Mechanism (MOM)
in the submodel MECCA (Module Efficiently Calculating the Chemistry of the Atmosphere) was activated with
explicit degradation of organic species up to five carbon atoms and a
simplified mechanism for larger molecules. Second, the ORACLE submodel (version 1.0)
now considers condensation on aerosols for all
organics in the mechanism. Parameterizations for aerosol yields are used only for the lumped species
that are not included in the explicit mechanism.
The simultaneous usage of MOM and ORACLE
allows an efficient estimation of not only the chemical degradation of
the simulated volatile organic compounds but also the contribution
of organics to the growth and fate of (organic) aerosol,
with the complexity of the mechanism largely increased
compared to EMAC simulations with more simplified chemistry.
The model evaluation presented here reveals that the OH concentration is reproduced well globally,
whereas significant biases for observed oxygenated organics are present.
We also investigate the general properties
of the aerosols and their composition, showing that the more
sophisticated and process-oriented secondary aerosol formation does not
degrade the good agreement of previous model configurations  with observations at the surface,
allowing further research in the field of gas–aerosol interactions.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e355">Volatile organic compounds (VOCs) play a pivotal role in the atmosphere by constraining the total oxidant level
and serve as precursors of ozone (<inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), carbon dioxide (<inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and secondary organic aerosols <xref ref-type="bibr" rid="bib1.bibx48" id="paren.1"/>.
Due to the complexity of the chemistry of VOCs, a comprehensive and explicit representation
thereof is mostly still missing in global and regional model simulations <xref ref-type="bibr" rid="bib1.bibx49" id="paren.2"/>.
To capture this full complexity, model simulations would become rather computationally expensive and slow in performance.
However, missing this complexity also substantially limits the current understanding of the budget of secondary pollutants, e.g. <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and aerosols.
The challenges involved are twofold:
(1) understanding and including the chemical degradation pathways and
(2) representing all other influencing processes (e.g. deposition, multiphase chemistry) in already complex global and regional models.</p>
      <p id="d1e397">A chemical mechanism that stands out for size and detailed oxidation of many important VOCs
is the Mainz Organic Mechanism (MOM, <xref ref-type="bibr" rid="bib1.bibx130" id="altparen.3"/>).
MOM represents the chemistry of alkanes, alkenes, terpenes (isoprene and monoterpenes) and monocyclic aromatics.
The mechanism has been employed to study the impact of isoprene <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> recycling above pristine tropical forests <xref ref-type="bibr" rid="bib1.bibx140" id="paren.4"/>,
oxidation of monoterpenes as a source of <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx51 bib1.bibx87" id="paren.5"/> and the influence of aromatics on tropospheric ozone <xref ref-type="bibr" rid="bib1.bibx141" id="paren.6"/>.
Furthermore, MOM has been used with extensions in order to simulate product yields of <inline-formula><mml:math id="M6" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-caryophyllene oxidation <xref ref-type="bibr" rid="bib1.bibx149" id="paren.7"/>,
the oxidation of alkyl amines and formamide as source of isocyanic acid <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HNCO</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx123" id="paren.8"/>,
the atmospheric losses of stabilized Criegee intermediates <xref ref-type="bibr" rid="bib1.bibx152" id="paren.9"/>,
and the most recent <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>-recycling mechanisms in isoprene oxidation <xref ref-type="bibr" rid="bib1.bibx104" id="paren.10"/>.
However, a full evaluation of the VOC distribution predicted by MOM in a global numerical model
has not been published.</p>
      <p id="d1e468">Furthermore, a more detailed chemical mechanism, which reduces the number of lumped species of larger VOCs,
allows an explicit coupling of the VOC chemistry with interactive aerosol-phase partitioning
and organic compound ageing without losing the chemical identity of the organic compounds.
Previous studies (e.g. <xref ref-type="bibr" rid="bib1.bibx30 bib1.bibx146" id="altparen.11"/>), which treat the organic aerosol with the
help of a volatility basis set (VBS) <xref ref-type="bibr" rid="bib1.bibx23" id="paren.12"/>,
usually use lumped species to represent tracers with similar volatility and age structure (e.g. <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio; see <xref ref-type="bibr" rid="bib1.bibx101" id="altparen.13"/>) and
therefore without any chemical identity or detailed degradation scheme.
Instead,  explicit chemistry schemes allow  a representation of secondary organic aerosol (SOA) formation from VOCs
without the use of lumped species and experimentally derived parameters
(e.g. reaction rates, aerosol yields). These tuning parameters
can increase model uncertainties and result in large differences between atmospheric chemistry models.
In addition, empirical chemical schemes are not mass conserving (e.g. for carbon)
and the higher-generation reaction products are lumped or ignored,
even if, for instance, they play a pivotal role for OH recycling and ozone chemistry
<xref ref-type="bibr" rid="bib1.bibx140" id="paren.14"/> or are a major component of atmospheric brown carbon
<xref ref-type="bibr" rid="bib1.bibx78" id="paren.15"/>. In general, explicit identities of model species
are essential for making further progress in quantifying the atmospheric budget
of secondary organic aerosols. By relying on high-quality (experimental and
theoretical) data of the physico-chemical properties of precursors and intermediates,
an ever more realistic modelling of removal, ageing and formation pathways would be possible.</p>
      <p id="d1e499">In this study we present a simulation and an evaluation of the ECHAM/MESSy Atmospheric Chemistry (EMAC) general circulation model <xref ref-type="bibr" rid="bib1.bibx66 bib1.bibx67" id="paren.16"/>
with a complex organic chemical mechanism (MOM, <xref ref-type="bibr" rid="bib1.bibx130" id="altparen.17"/>), accounting not only for the gas-phase chemistry but also
for the losses via uptake and condensation into aerosols (via the ORACLE submodel) and cloud droplets (via the SCAV submodel).
As the EMAC model has largely already been evaluated in the past and for most of the components there were no
significant changes, we focus on the evaluation of organic tracers and aerosols.
Most importantly, general properties of the aerosols (such as aerosol optical depth (AOD) and particulate
concentration below 2.5 <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) will be discussed, as these could be strongly affected.
Furthermore, changes to the global hydroxyl radical distribution influenced by the new chemistry adopted
in this study are discussed.</p>
      <p id="d1e528">A comparison for VOCs with the MIM (Mainz Isoprene Mechanism) chemical mechanism developed by <xref ref-type="bibr" rid="bib1.bibx110" id="text.18"/>
that has been evaluated by <xref ref-type="bibr" rid="bib1.bibx112" id="text.19"/> and used previously <xref ref-type="bibr" rid="bib1.bibx65 bib1.bibx67" id="paren.20"/>
is not shown here as in such a mechanism
(i) most of organics are either lumped, e.g. methyl vinyl ketone (MVK) and methancrolein (MACR),
or missing, e.g. aromatics and monoterpenes;
(ii) primary species common to MIM and MOM would be influenced only by the different sinks
(mainly <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>; a detailed description of <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> budget is presented in this paper); and
(iii) the model bias with respect to secondary species, e.g. oxygenated VOCs, has been linked to a misrepresentation or lack of representation of processes like in-cloud chemistry <xref ref-type="bibr" rid="bib1.bibx125 bib1.bibx36" id="paren.21"/>.
Therefore, any comparison of VOC simulations between MOM and MIM would not give any
additional information on the model–observation discrepancy or aid any future model improvement.</p>
      <p id="d1e560">The model setup is presented in Sect. <xref ref-type="sec" rid="Ch1.S2"/>, followed by the
description of the observational dataset used for the evaluation (Sect. <xref ref-type="sec" rid="Ch1.S3"/>), which is then presented for different tracers and aerosol components.
This model evaluation is the basis for future studies on complex organic chemistry
with EMAC.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Model configuration</title>
      <p id="d1e575">EMAC is a numerical chemistry and climate simulation system
that includes submodels describing tropospheric and middle-atmosphere processes
and their interaction with oceans,
land and human influences <xref ref-type="bibr" rid="bib1.bibx67" id="paren.22"/>.
It uses the second version of the Modular Earth Submodel System (MESSy2)
to link multi-institutional computer codes.
The core atmospheric model is the fifth-generation European Centre Hamburg general circulation model (ECHAM5 <xref ref-type="bibr" rid="bib1.bibx122" id="altparen.23"/>).
For the present study, we applied EMAC (ECHAM5 version 5.3.02, MESSy version 2.54.0) in the T63L31 resolution,
i.e. with a spherical triangular truncation of T63 (corresponding to a quadratic Gaussian grid of approx. <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.8</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> by <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.8</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> in latitude and longitude)
and 31 vertical hybrid pressure levels up to 10 hPa, with roughly 22 levels in the troposphere.
The dynamics have been weakly nudged <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx65" id="paren.24"/> towards the ERA-interim data <xref ref-type="bibr" rid="bib1.bibx10" id="paren.25"/> of the European Centre for Medium-Range Weather Forecasts (ECMWF)
to reproduce the actual day-to-day meteorology in the troposphere.
In this study we simulated 2 years (2009–2010), with the first year being used as spin-up time.</p>
      <p id="d1e615">The anthropogenic emissions are based on the Emissions Database for Global Atmospheric Research (EDGARv4.3.2 <xref ref-type="bibr" rid="bib1.bibx16" id="altparen.26"/>),
vertically distributed following <xref ref-type="bibr" rid="bib1.bibx113" id="text.27"/>, and have been compared to
other global emission databases by <xref ref-type="bibr" rid="bib1.bibx16" id="text.28"/>.
These prescribed emissions are included in the model via the OFFEMIS submodel <xref ref-type="bibr" rid="bib1.bibx72" id="paren.29"/>.
The biogenic emissions of non-methane volatile organic compounds (NMVOCs)
are calculated online using
the Model of Emissions of Gases and Aerosol from Nature
(MEGANv2.04, <xref ref-type="bibr" rid="bib1.bibx43 bib1.bibx44" id="altparen.30"/>).
Lightning <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production is based on the parametrization of <xref ref-type="bibr" rid="bib1.bibx41" id="text.31"/>, while
the algorithm of <xref ref-type="bibr" rid="bib1.bibx163" id="text.32"/> is used for soil <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions,
as described in detail in <xref ref-type="bibr" rid="bib1.bibx67" id="text.33"/>.</p>
      <p id="d1e665">Biomass burning emissions are calculated daily online based on dry matter burned from observations and fire type <xref ref-type="bibr" rid="bib1.bibx68" id="paren.34"/>.
The emission factors for different tracers and fire types are taken from <xref ref-type="bibr" rid="bib1.bibx4" id="text.35"/> and <xref ref-type="bibr" rid="bib1.bibx1" id="text.36"/>.
The ONEMIS submodel <xref ref-type="bibr" rid="bib1.bibx72" id="paren.37"/> calculates natural emission fluxes of sea salt <xref ref-type="bibr" rid="bib1.bibx42" id="paren.38"/>
and dust <xref ref-type="bibr" rid="bib1.bibx75 bib1.bibx6" id="paren.39"/>.
Oceanic emissions and deposition are calculated online with the AIRSEA submodel <xref ref-type="bibr" rid="bib1.bibx111 bib1.bibx31 bib1.bibx77" id="paren.40"/>
for <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">DMS</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCN</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>
(a net sink for <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCN</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> and a net source for the others).
For <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> alkanes and alkenes, the oceanic offline emissions from <xref ref-type="bibr" rid="bib1.bibx58" id="text.41"/> have been adopted.</p>
      <p id="d1e825">In Table <xref ref-type="table" rid="Ch1.T1"/> the total emissions are listed for all primary species emitted in the model.</p>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e834">Emissions of primary emitted species for the year 2010 used in this study. The values are given in units of <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Tg</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">species</mml:mi><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
with the exception of <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>, which is given in <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Tg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">N</mml:mi><mml:mo>)</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Identifier</oasis:entry>
         <oasis:entry colname="col2">Extended name</oasis:entry>
         <oasis:entry colname="col3">Anthropogenic</oasis:entry>
         <oasis:entry colname="col4">Natural or biogenic</oasis:entry>
         <oasis:entry colname="col5">Biomass burning</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">BC</oasis:entry>
         <oasis:entry colname="col2">Black carbon</oasis:entry>
         <oasis:entry colname="col3">4.34</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">1.84</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">OC</oasis:entry>
         <oasis:entry colname="col2">Organic carbon</oasis:entry>
         <oasis:entry colname="col3">11.05</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">15.53</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SO2</oasis:entry>
         <oasis:entry colname="col2">Sulfur Dioxide</oasis:entry>
         <oasis:entry colname="col3">99.35</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">1.95</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NO</oasis:entry>
         <oasis:entry colname="col2">Nitrogen oxides</oasis:entry>
         <oasis:entry colname="col3">34.50</oasis:entry>
         <oasis:entry colname="col4">6.09</oasis:entry>
         <oasis:entry colname="col5">3.98</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CO</oasis:entry>
         <oasis:entry colname="col2">Carbon monoxide</oasis:entry>
         <oasis:entry colname="col3">537.16</oasis:entry>
         <oasis:entry colname="col4">106.84</oasis:entry>
         <oasis:entry colname="col5">289.51</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NH3</oasis:entry>
         <oasis:entry colname="col2">Ammonia</oasis:entry>
         <oasis:entry colname="col3">57.67</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">4.07</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C2H6</oasis:entry>
         <oasis:entry colname="col2">Ethane</oasis:entry>
         <oasis:entry colname="col3">9.00</oasis:entry>
         <oasis:entry colname="col4">1.32</oasis:entry>
         <oasis:entry colname="col5">2.91</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C3H8</oasis:entry>
         <oasis:entry colname="col2">Propane</oasis:entry>
         <oasis:entry colname="col3">10.50</oasis:entry>
         <oasis:entry colname="col4">1.46</oasis:entry>
         <oasis:entry colname="col5">0.52</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HCN</oasis:entry>
         <oasis:entry colname="col2">Hydrogen cyanide</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">2.13</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH3CN</oasis:entry>
         <oasis:entry colname="col2">Acetonitrile</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">1.03</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NC4H10</oasis:entry>
         <oasis:entry colname="col2">n-butane</oasis:entry>
         <oasis:entry colname="col3">9.90</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.12</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">IC4H10</oasis:entry>
         <oasis:entry colname="col2">i-butane</oasis:entry>
         <oasis:entry colname="col3">4.20</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.04</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">MEK</oasis:entry>
         <oasis:entry colname="col2">Methyl ethyl ketone</oasis:entry>
         <oasis:entry colname="col3">1.00</oasis:entry>
         <oasis:entry colname="col4">0.18</oasis:entry>
         <oasis:entry colname="col5">0.45</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH3CHO</oasis:entry>
         <oasis:entry colname="col2">Acetaldehyde</oasis:entry>
         <oasis:entry colname="col3">2.00</oasis:entry>
         <oasis:entry colname="col4">15.35</oasis:entry>
         <oasis:entry colname="col5">2.80</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH3COCH3</oasis:entry>
         <oasis:entry colname="col2">Acetone</oasis:entry>
         <oasis:entry colname="col3">1.10</oasis:entry>
         <oasis:entry colname="col4">35.84</oasis:entry>
         <oasis:entry colname="col5">1.29</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH3CO2H</oasis:entry>
         <oasis:entry colname="col2">Acetic acid</oasis:entry>
         <oasis:entry colname="col3">6.52</oasis:entry>
         <oasis:entry colname="col4">3.45</oasis:entry>
         <oasis:entry colname="col5">13.20</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH3OH</oasis:entry>
         <oasis:entry colname="col2">Methanol</oasis:entry>
         <oasis:entry colname="col3">9.71</oasis:entry>
         <oasis:entry colname="col4">105.54</oasis:entry>
         <oasis:entry colname="col5">6.32</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HCOOH</oasis:entry>
         <oasis:entry colname="col2">Formic acid</oasis:entry>
         <oasis:entry colname="col3">3.56</oasis:entry>
         <oasis:entry colname="col4">3.45</oasis:entry>
         <oasis:entry colname="col5">2.32</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH3COCO2H</oasis:entry>
         <oasis:entry colname="col2">Pyruvic acid</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">0.36</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HCHO</oasis:entry>
         <oasis:entry colname="col2">Methanal, formaldehyde</oasis:entry>
         <oasis:entry colname="col3">4.50</oasis:entry>
         <oasis:entry colname="col4">5.17</oasis:entry>
         <oasis:entry colname="col5">4.15</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C2H4</oasis:entry>
         <oasis:entry colname="col2">Ethene</oasis:entry>
         <oasis:entry colname="col3">5.40</oasis:entry>
         <oasis:entry colname="col4">24.55</oasis:entry>
         <oasis:entry colname="col5">3.55</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C3H6</oasis:entry>
         <oasis:entry colname="col2">Propene</oasis:entry>
         <oasis:entry colname="col3">4.26</oasis:entry>
         <oasis:entry colname="col4">15.76</oasis:entry>
         <oasis:entry colname="col5">3.01</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C2H2</oasis:entry>
         <oasis:entry colname="col2">acetylene</oasis:entry>
         <oasis:entry colname="col3">5.40</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.23</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">BUT1ENE</oasis:entry>
         <oasis:entry colname="col2">1-butene</oasis:entry>
         <oasis:entry colname="col3">1.46</oasis:entry>
         <oasis:entry colname="col4">6.23</oasis:entry>
         <oasis:entry colname="col5">0.07</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">TBUT2ENE</oasis:entry>
         <oasis:entry colname="col2">1,2-dimethylethylene</oasis:entry>
         <oasis:entry colname="col3">1.46</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.05</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CBUT2ENE</oasis:entry>
         <oasis:entry colname="col2">2-butene</oasis:entry>
         <oasis:entry colname="col3">1.46</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.20</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">MEPROPENE</oasis:entry>
         <oasis:entry colname="col2">Methylpropene</oasis:entry>
         <oasis:entry colname="col3">1.46</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.20</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">BENZENE</oasis:entry>
         <oasis:entry colname="col2">Benzene</oasis:entry>
         <oasis:entry colname="col3">5.82</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">1.42</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">TOLUENE</oasis:entry>
         <oasis:entry colname="col2">Toluene</oasis:entry>
         <oasis:entry colname="col3">7.80</oasis:entry>
         <oasis:entry colname="col4">0.35</oasis:entry>
         <oasis:entry colname="col5">0.83</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">LXYL</oasis:entry>
         <oasis:entry colname="col2">Xylenes</oasis:entry>
         <oasis:entry colname="col3">7.24</oasis:entry>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5">0.28</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">LTMB</oasis:entry>
         <oasis:entry colname="col2">Trimethylbenzenes</oasis:entry>
         <oasis:entry colname="col3">0.95</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.06</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">PHENOL</oasis:entry>
         <oasis:entry colname="col2">Phenol</oasis:entry>
         <oasis:entry colname="col3">1.70</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">2.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">STYRENE</oasis:entry>
         <oasis:entry colname="col2">Styrene</oasis:entry>
         <oasis:entry colname="col3">1.87</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.16</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">EBENZ</oasis:entry>
         <oasis:entry colname="col2">Ethylbenzene</oasis:entry>
         <oasis:entry colname="col3">1.91</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">0.56</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">LHAROM</oasis:entry>
         <oasis:entry colname="col2">Other aromatics</oasis:entry>
         <oasis:entry colname="col3">3.22</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">2.86</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">C5H8</oasis:entry>
         <oasis:entry colname="col2">Isoprene</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">463.89</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">APINENE</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M31" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">33.18</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">BPINENE</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M32" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">18.71</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CARENE</oasis:entry>
         <oasis:entry colname="col2">3-carene</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">6.94</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SABINENE</oasis:entry>
         <oasis:entry colname="col2">Sabinene</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">7.13</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CAMPHENE</oasis:entry>
         <oasis:entry colname="col2">Camphene</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">3.20</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">MBO</oasis:entry>
         <oasis:entry colname="col2">Methyl butenol</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">1.36</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">LTERP</oasis:entry>
         <oasis:entry colname="col2">Lumped other terpenes</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">31.86</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">LALK4</oasis:entry>
         <oasis:entry colname="col2">Lumped pentanes</oasis:entry>
         <oasis:entry colname="col3">15.1</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">LALK5</oasis:entry>
         <oasis:entry colname="col2">Lumped higher alkanes</oasis:entry>
         <oasis:entry colname="col3">21.2</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">OLE2</oasis:entry>
         <oasis:entry colname="col2">Lumped higher alkenes</oasis:entry>
         <oasis:entry colname="col3">8.20</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">DMS</oasis:entry>
         <oasis:entry colname="col2">Dimethyl sulfide</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">57.96</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e1796">Dry deposition and sedimentation are estimated by the DDEP (Dry DEPosition) and SEDI (SEDImentation) submodels <xref ref-type="bibr" rid="bib1.bibx71" id="paren.42"/>,
while wet deposition is simulated by the SCAV (SCAVenging) submodel <xref ref-type="bibr" rid="bib1.bibx144" id="paren.43"/>.
The dissolution of species in the liquid-phase  mechanism was augmented
by including the liquid–gas equilibrium for all additional organics present in the mechanism with
a Henry's law constant (solubility) above <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">atm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
For less soluble species, wet scavenging is not expected to be important <xref ref-type="bibr" rid="bib1.bibx17" id="paren.44"/>.
The Henry's law constants of most oxygenated VOCs of atmospheric relevance are unknown, and estimation methods
still quite uncertain <xref ref-type="bibr" rid="bib1.bibx155" id="paren.45"/>. As the hydroxyl (and hydroperoxyl) group affects the solubility in water the most,
the Henry's law constants of polyols from the compilation by <xref ref-type="bibr" rid="bib1.bibx129" id="text.46"/> are taken as proxies.</p>
      <p id="d1e1852">In the chemistry submodel MECCA (Module Efficiently Calculating the Chemistry of the Atmosphere), we used the Mainz Organic Mechanism (MOM, <xref ref-type="bibr" rid="bib1.bibx130" id="altparen.47"/>),
with roughly 600 species and 1600 reactions. It originates from a reduced isoprene oxidation mechanism <xref ref-type="bibr" rid="bib1.bibx139" id="paren.48"/>,
which has been updated with recent kinetic data and expanded with efficient mechanisms
of <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>-recycling under low-<inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> conditions <xref ref-type="bibr" rid="bib1.bibx140 bib1.bibx103" id="paren.49"/>.
The oxidation mechanism for <inline-formula><mml:math id="M37" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and
<inline-formula><mml:math id="M38" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene is based on the MCM (Master Chemical Mechanism, <xref ref-type="bibr" rid="bib1.bibx57" id="altparen.50"/>) with modifications according
to theoretical work in the literature <xref ref-type="bibr" rid="bib1.bibx151 bib1.bibx13 bib1.bibx102 bib1.bibx150" id="paren.51"/>.
The degradation of monocyclic aromatics follows the MCM <xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx11" id="paren.52"/>
but with some modifications for the chemistry of phenols <xref ref-type="bibr" rid="bib1.bibx12" id="paren.53"/>.
The complete mechanism used in this study is part of the Supplement.</p>
      <p id="d1e1907">Aerosol microphysics and gas–aerosol partitioning
are calculated by the Global Modal-aerosol eXtension (GMXe) aerosol module
(described by <xref ref-type="bibr" rid="bib1.bibx118 bib1.bibx119" id="altparen.54"/>).
GMXe simulates the distribution of aerosol within interacting lognormal modes
(in a similar approach to that of <xref ref-type="bibr" rid="bib1.bibx154 bib1.bibx88" id="altparen.55"/>).
The lognormal modes span four size categories (nucleation (<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> nm radius),
Aitken (6–60 nm), accumulation (60–600 nm) and coarse (<inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">700</mml:mn></mml:mrow></mml:math></inline-formula> nm))
and are divided into hydrophilic (4) and
a hydrophobic (3) modes.
The GMXe model has been extensively evaluated previously
<xref ref-type="bibr" rid="bib1.bibx115 bib1.bibx116 bib1.bibx143 bib1.bibx70" id="paren.56"/>.</p>
      <p id="d1e1939">Organic aerosol (OA) formation is simulated by the submodel ORACLE
(<xref ref-type="bibr" rid="bib1.bibx145" id="altparen.57"/>, v.1.0), where logarithmically spaced saturation concentration bins
are used to describe the organic aerosol components based on their volatility.
For the formation of primary (POA) and secondary (SOA) organic aerosol
from the emissions and photochemical oxidation of semivolatile
and intermediate volatility organic compounds, the setup of  <xref ref-type="bibr" rid="bib1.bibx146" id="text.58"/> is used.
However, the SOA formation from the oxidation of the volatile organic compounds (VOC)
in ORACLE has been modified to accommodate the photochemical production
of components explicitly calculated by the MOM chemical mechanism.
An earlier version of MOM has been compared against chamber measurements
<xref ref-type="bibr" rid="bib1.bibx103" id="paren.59"/> and improved by <xref ref-type="bibr" rid="bib1.bibx104" id="text.60"/>,
while ORACLE was derived empirically from chamber experiments <xref ref-type="bibr" rid="bib1.bibx23" id="paren.61"/>
and has been evaluated against observations from a field campaign
by <xref ref-type="bibr" rid="bib1.bibx61" id="text.62"/>. Nevertheless, the MOM <inline-formula><mml:math id="M41" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> ORACLE combination still has to be
fully evaluated.</p>
      <p id="d1e1968">The effective saturation concentration of all the species present
in the MECCA submodel is calculated based on their elemental composition
(number of carbon, oxygen, nitrogen and sulfur atoms),
following the molecular corridor approach <xref ref-type="bibr" rid="bib1.bibx85" id="paren.63"/> and the study by
<xref ref-type="bibr" rid="bib1.bibx23" id="text.64"/>.
In Fig. <xref ref-type="fig" rid="Ch1.F1"/>, the volatility versus the molar mass is shown for all tracers
present in the model, ranging from high volatility–low molar mass
to low volatility–high molar mass.
These calculations result in 199 tracers that
can partition to the aerosol-phase, forming SOA under atmospheric conditions
(i.e. with a volatility lower than  <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>),
while the other 396 tracers are considered too volatile for any condensation
on aerosol particles.
Additionally, the enthalpy of vaporization for the same condensing species
has been estimated based on the study by <xref ref-type="bibr" rid="bib1.bibx29" id="text.65"/>.
In addition to the 199 tracers, 11 additional “lumped species” for
different oxidation levels of pentanes, higher alkanes, higher alkenes
and terpenes have been added.
Following this, ORACLE calculates the partitioning of these organic species
between the gas and particle phases by assuming a bulk equilibrium
and by further assuming that all organic compounds form a pseudo-ideal solution.
The aerosol size distribution is determined by distributing
the change in aerosol mass after the bulk equilibrium into each size mode
using a weighting factor <xref ref-type="bibr" rid="bib1.bibx145" id="paren.66"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e2023">Saturation mass concentrations at 298 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx85" id="paren.67"/>
versus molar mass of organic tracers in EMAC.
The blue dots represent those included in ORACLE, i.e. organic tracers that
are allowed to condense explicitly on aerosols under atmospheric conditions;
the green dots represent those organic tracers that are always in the gas phase.
The dashed line represents the maximum volatility considered in ORACLE
(i.e. <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) for the VOC oxidation products.
</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f01.png"/>

      </fig>

      <p id="d1e2077"><?xmltex \hack{\newpage}?>The aerosol optical properties are calculated with the submodel AEROPT <xref ref-type="bibr" rid="bib1.bibx22" id="paren.68"/>,
which is based on the scheme by <xref ref-type="bibr" rid="bib1.bibx79" id="text.69"/>
and makes use of predefined lognormal modes
(i.e. the mode width <inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> and the mode mean radius have to be taken into account).
Lookup tables with the extinction coefficient, the single-scattering albedo, and the asymmetry factor
for the shortwave part of the spectrum and the extinction coefficient for the longwave part
of the spectrum are pre-calculated with the help of Mie theory-based explicit radiative transfer
calculations (see <xref ref-type="bibr" rid="bib1.bibx115 bib1.bibx22" id="altparen.70"/>).
The aerosol compounds explicitly considered for their refractive indices are organic carbon, black carbon, dust, sea salt,
water-soluble compounds  (WASO, i.e. all other water soluble inorganic ions,
e.g. <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">HSO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) and aerosol water (<inline-formula><mml:math id="M52" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>).</p>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Observational data</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Aircraft measurements</title>
      <p id="d1e2181">Due to the high complexity of the MOM mechanism, we do not expect the model to be capable
of representing polluted episodic conditions.
Additionally, investigations of these conditions should be accompanied with detailed process studies,
as has been done in previous studies with this mechanism (e.g. <xref ref-type="bibr" rid="bib1.bibx82 bib1.bibx138" id="altparen.71"/>).
Instead we want to demonstrate its ability to reproduce background conditions in a climatological sense.
For this reason, three different aircraft databases were chosen, which are all
based on profiles of several flights and seasons, are taken over background regions,
and provide an extensive set of observed trace gases.</p>
<sec id="Ch1.S3.SS1.SSS1">
  <label>3.1.1</label><title>NASA ATom campaign</title>
      <p id="d1e2194">We used observational data from the NASA Atmospheric Tomography Mission (ATom). The ATom campaign took place from July 2016 to May 2018 and included measurements in four different seasons (six flights each). During the flights with the NASA DC-8 aircraft, numerous profiles were recorded (see Fig. <xref ref-type="fig" rid="Ch1.F2"/>), which makes the dataset perfect for the evaluation of atmospheric model simulations.
The data used in this evaluation was taken from the “Merged Atmospheric Chemistry, Trace Gases, and Aerosols, Version 2 dataset” <xref ref-type="bibr" rid="bib1.bibx160" id="paren.72"/> and are based on the following instruments: the UC-Irvine Whole Air Sampler (WAS; <xref ref-type="bibr" rid="bib1.bibx7" id="altparen.73"/>), the Trace Organic Gas Analyzer (TOGA; <xref ref-type="bibr" rid="bib1.bibx5" id="altparen.74"/>),  the California Institute of Technology Chemical Ionization Mass Spectrometer (CIT-CIMS; <xref ref-type="bibr" rid="bib1.bibx2" id="altparen.75"/>), the NOAA Chemical Ionization Mass Spectrometer (NOAACIMS; <xref ref-type="bibr" rid="bib1.bibx153" id="altparen.76"/>), the Georgia Tech Ionization Mass Spectrometer (GTCIMS; <xref ref-type="bibr" rid="bib1.bibx55" id="altparen.77"/>), the NOAA Nitrogen Oxides and Ozone Instrument (<inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; <xref ref-type="bibr" rid="bib1.bibx127" id="altparen.78"/>), and the NOAA Picarro G2401 spectrometer (NOAA-Picarro; <xref ref-type="bibr" rid="bib1.bibx90" id="altparen.79"/>).
The ATom observations were subdivided into data for different regions for this study (Fig. <xref ref-type="fig" rid="Ch1.F2"/>; namely Northwest Pacific, Southwest Pacific, East Pacific, Southern Ocean, South Atlantic, North Atlantic, and North Canada/Alaska/Greenland) based on expected homogeneous properties of organic compounds in those regions.
A climatological comparison between the simulated year (2010) and the data from the ATom campaign (2016–2018) will be performed in order to further evaluate whether the MOM mechanism is able to reproduce remote conditions. For that purpose we divided the altitude range into 12 bins (linearly between 0.5 and 12.5 km) and defined a maximum of 336 (7 regions <inline-formula><mml:math id="M54" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 4 seasons <inline-formula><mml:math id="M55" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 12 altitude bins) points of interest (POI). For each POI we compared the mean value of all observations in the specific region, altitude bin and season to the mean value of all accordingly simulated values in 2010 in the range of <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> d around the flights conducted in that region.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e2269">Flight paths of the four ATom campaigns. The respective altitude is coloured, and the paths are sub-divided into seven different remote regions, namely the Northwest Pacific (1), Southwest Pacific (2), East Pacific (3), Southern Ocean (4), South Atlantic (5), North Atlantic (6), and North Canada/Alaska/Greenland (7).
</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f02.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS1.SSS2">
  <label>3.1.2</label><title>Emmons database</title>
      <p id="d1e2286">We  also used the database of aircraft measurements of trace gases produced by <xref ref-type="bibr" rid="bib1.bibx27" id="text.80"/>.
It is based on observations from numerous aircraft campaigns that took place during the period 1990–2001 to create observation-based climatologies of chemical species relevant to tropospheric chemistry.
Although these measurements cover only limited time periods and regions, they provide valuable information about the vertical distribution of the analysed trace gases.
Note that the field campaigns used in this evaluation have been extended to also include observations after the year 2000, such as those from the TOPSE and TRACE-P campaigns.</p>
</sec>
<sec id="Ch1.S3.SS1.SSS3">
  <label>3.1.3</label><title>Heald database</title>
      <p id="d1e2300">The aircraft evaluation is completed by aircraft measurements
for organic aerosols presented by <xref ref-type="bibr" rid="bib1.bibx50" id="text.81"/>. This dataset includes organic aerosol
measurements from 17 aircraft campaigns during the period 2001–2009. Here, similar to <xref ref-type="bibr" rid="bib1.bibx27" id="text.82"/>,
we consider the aircraft campaigns representative for the period and the regions, i.e.
as an observation-based climatology. Therefore, we compared these data with the model
results for the year 2010, yielding an improved evaluation of the vertical distribution of the organic aerosols in the troposphere.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Station measurements</title>
<sec id="Ch1.S3.SS2.SSS1">
  <label>3.2.1</label><title>NOAA-INSTAAR</title>
      <p id="d1e2325">Data from the National Oceanic and Atmospheric Administration (NOAA) Institute of Arctic and Alpine Research (INSTAAR)
Global Monitoring Program were also used in this study. The network consists of 44 background stations
from the NOAA Global Greenhouse Gases Reference Network (GGGRN) <xref ref-type="bibr" rid="bib1.bibx109" id="paren.83"/>,
where pairs of whole air samples are collected weekly and shipped to a central laboratory for analyses.
For this study, we considered measurements of ethane, propane, iso-butane and n-butane from this network.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <label>3.2.2</label><title>EPA</title>
      <p id="d1e2339">The Clean Air Markets Division of the U.S. Environmental Protection Agency (EPA) operates
the Clean Air Status and Trends Network (CASTNET), with a total of 97 stations.
Here, we include weekly filter pack data from 81 stations
for <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Na</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M61" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mg</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Ca</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M63" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">K</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Cl</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> for the year 2010.
The data can be downloaded at <uri>https://www.epa.gov/castnet</uri> (last access: 2 March 2022).</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <label>3.2.3</label><title>IMPROVE</title>
      <p id="d1e2457">In order to evaluate the simulated regional background OA
concentrations, we use monthly averaged <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> OA measurements during the year 2010
from the Interagency Monitoring of Protected Visual Environments (IMPROVE) program
(<uri>http://views.cira.colostate.edu/fed</uri>, last access: 21 September 2021).
IMPROVE is a cooperative measurement effort in the United States designed
to characterize current visibility and aerosol conditions in scenic areas
(primarily national parks and forests).
This network includes 198 monitoring sites that are representative
of the regional haze conditions over North America.
IMPROVE co-located samplers collect 24 h samples every 3 d.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS4">
  <label>3.2.4</label><title>EMEP</title>
      <p id="d1e2482">The co-operative programme for monitoring and evaluation of the long-range transmission of air pollutants in Europe (EMEP)
is a science-based and policy-driven programme under the Convention on Long-range Transboundary Air Pollution
for international co-operation to solve transboundary air pollution problems.
We use data from 42 stations, although the number of stations providing sufficient data for a certain species ranges from 22 to 42
(see Table <xref ref-type="table" rid="Ch1.T6"/>).
As Teflon filters are predominantly used, depending on the respective station,
the concentrations of particulate nitrate can be systematically underestimated <xref ref-type="bibr" rid="bib1.bibx3" id="paren.84"/>.
The data were obtained from the EBAS database (<uri>http://ebas.nilu.no/</uri>,  last access: 21 September 2021), and
stations that did not provide full coverage of monthly mean values for the year 2010 were excluded from the analysis.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS5">
  <label>3.2.5</label><title>EANET</title>
      <p id="d1e2502">The  Acid  Deposition  Monitoring  Network  in  East  Asia  (EANET) regularly has monitored
acid deposition since January 2001.
A total of 13 countries currently participate in this effort, submitting data from a total of 54 sites.
We use monthly averaged aerosol concentrations from 15 to 25 stations for the year 2010,
with the data obtained from the Network Center for EANET, which are archived at
<uri>https://monitoring.eanet.asia/document/public/index</uri> (last access: 2 March 2022).
It is worth mentioning that EANET does not include OA observations.
The simulated <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> OA over East Asia is evaluated against collected short-term measurement data as summarized by <xref ref-type="bibr" rid="bib1.bibx64" id="text.85"/>.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Remote sensing observations</title>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>MOPITT</title>
      <p id="d1e2538">MOPITT (Measurement of Pollution in the Troposphere) is a sensor onboard the NASA's Terra satellite. We use the MOPO3JM version 8 product of MOPITT, which provides monthly mean gridded column-integrated CO, vertical profiles of CO mixing ratios at 10 regularly spaced pressure levels from the surface up to 100 hPa and the corresponding averaging kernels <xref ref-type="bibr" rid="bib1.bibx19" id="paren.86"/>. The MOPO3JM product is based on the joint near-infrared (NIR) and thermal-infrared (TIR) retrievals of CO. We apply the MOPITT averaging kernels to the EMAC CO profiles according to Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) to ensure the same level of smoothing as that in the MOPO3JM product.
              <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M67" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">rtv</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">true</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold">I</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></disp-formula>
            Here, <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">true</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the EMAC profile, <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the a priori profile, <inline-formula><mml:math id="M70" display="inline"><mml:mi mathvariant="bold">A</mml:mi></mml:math></inline-formula> is the averaging kernel matrix and <inline-formula><mml:math id="M71" display="inline"><mml:mi mathvariant="bold">I</mml:mi></mml:math></inline-formula> represents an identity matrix.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>MODIS</title>
      <p id="d1e2629">The MODerate resolution Imaging Spectroradiometer (MODIS) sensor is also located on the Terra satellite.
Here, AOD550 data (i.e. aerosol optical depth at 550 nm) from the MODIS Level 3
(Col. 6.11) gridded product are used at a spatial resolution of <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>.
The data are available through the Atmosphere Archive &amp; Distribution System (LAADS)
(<uri>https://ladsweb.modaps.eosdis.nasa.gov/</uri>, last access: 21 September 2021).
The Deep Blue algorithm <xref ref-type="bibr" rid="bib1.bibx54" id="paren.87"/> was used here for the aerosol AOD.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS3">
  <label>3.3.3</label><title>IASI</title>
      <p id="d1e2666">Global observations of a suite of VOCs are retrieved from the thermal infrared measurements
of the nadir-viewing IASI (Infrared Atmospheric Sounding Interferometer) instruments <xref ref-type="bibr" rid="bib1.bibx15" id="paren.88"/>.
The VOC dataset exploited here consists of total column densities of methanol, acetone, formic and acetic acids,
and PAN, all retrieved on a near-global and daily basis from the IASI/MetOp-A observations with the aid of the
ANNI (Artificial Neural Network for IASI) v3 retrieval framework.
This neural-network-based retrieval approach does not rely on a priori information of the total column densities, and hence
the products can be used directly for unbiased comparisons with model data (see <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx159" id="altparen.89"/>).
The satellite products are filtered for measurements affected by clouds and poor retrieval performance.
The uncertainties on the individual retrieved column densities can be large but are considerably reduced
by averaging numerous observations in space and time, as has been done in this study by comparing annual averages
on the model grid.
A full description of the ANNI framework, the characterization of the VOC products,
and comparisons of the satellite data with independent measurements can be found in
<xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx34 bib1.bibx35" id="text.90"/>, <xref ref-type="bibr" rid="bib1.bibx86" id="text.91"/> and references therein.
These studies, thanks to comparisons with ground-based column density measurements of VOCs and column densities derived from aircraft profiles,
indicate no large systematic biases in the IASI data and no dependence on the latitude,
although an underestimation (locally up to 30 %) of the highest column densities over tropical source regions
(e.g. the Amazon basin) has been identified for all the IASI VOC products (except PAN).
The accuracy of the IASI measurements is therefore sufficient to provide a global evaluation of the EMAC performance,
considering the large uncertainties that still affect the emissions and atmospheric modelling of the VOCs.
For both IASI and the model, daily gridded averages were constructed at the spatial resolution of the model grid.
To have similar temporal coverage over the year between model and satellite observations,
the EMAC daily averages were masked when the corresponding IASI data were missing for the same day and location.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS4">
  <label>3.3.4</label><title>AERONET</title>
      <p id="d1e2689">The AOD observations have been obtained from the global AErosol RObotic NETwork
(AERONET <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx24" id="altparen.92"/>).
The cloud-screened quality-assured Level 2 AOD data used in this study were obtained from the website <uri>http://aeronet.gsfc.nasa.gov/cgi-bin/combined_data_access_new</uri> (last access:  21 September 2021), including the AOD daily averages.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Pseudo-observations</title>
      <p id="d1e2707">Global annual averages of fine particulate matter with an aerodynamic diameter below 2.5 <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)
have been obtained from <xref ref-type="bibr" rid="bib1.bibx46" id="text.93"/>. In this dataset, a combination of satellite-observed AOD, numerical model and
ground-based <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements were used to estimate <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> on a global scale at high resolution.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Results</title>
      <p id="d1e2765">In Table <xref ref-type="table" rid="Ch1.T2"/> the evaluation of organic tracers using observations from the ATom campaign is presented, while Table <xref ref-type="table" rid="Ch1.T3"/> shows the comparison of the model results with the aircraft campaign data from <xref ref-type="bibr" rid="bib1.bibx27" id="text.94"/> for selected tracers. There are no measurements of acetic acid (<inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula>) from the ATom campaign, and the observations of ethene (<inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and propene (<inline-formula><mml:math id="M79" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are very limited. Thus, they will not be considered for discussion. In the Emmons database, there are no observations of i-butane (i-<inline-formula><mml:math id="M80" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>​​​​​​​) and n-butane (n-<inline-formula><mml:math id="M81" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e2856">Summary of simulated and observed mixing ratios of different tracers from the ATom campaign <xref ref-type="bibr" rid="bib1.bibx160" id="paren.95"/>. <inline-formula><mml:math id="M82" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>.points is the number of points used for the statistical estimation. The arithmetic mean of the model simulated mixing ratios (<inline-formula><mml:math id="M83" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>), the observed mixing ratios (<inline-formula><mml:math id="M84" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>​​​​​​​) and the corresponding standard deviations (MSTD, OSTD) (in <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">mol</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) are listed in the subsequent columns (for <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> units are <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">mol</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). PF2 denotes the percentage of simulated points within a factor of 2 with respect to the observations, and RMSE represents the root-mean-square error between simulated and observed points. CORR is the Pearson correlation coefficient.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="11">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Species (instrument)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M89" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>.points​​​​​​​</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M90" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">MSTD</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M91" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">OSTD</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M92" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8">PF2</oasis:entry>
         <oasis:entry colname="col9">RMSE</oasis:entry>
         <oasis:entry colname="col10">CORR</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M93" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> (NOAA-Picarro)</oasis:entry>
         <oasis:entry colname="col2">332</oasis:entry>
         <oasis:entry colname="col3">76.86</oasis:entry>
         <oasis:entry colname="col4">18.98</oasis:entry>
         <oasis:entry colname="col5">81.22</oasis:entry>
         <oasis:entry colname="col6">23.99</oasis:entry>
         <oasis:entry colname="col7">0.98</oasis:entry>
         <oasis:entry colname="col8">100.0</oasis:entry>
         <oasis:entry colname="col9">10.56</oasis:entry>
         <oasis:entry colname="col10">0.82</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (WAS)</oasis:entry>
         <oasis:entry colname="col2">143</oasis:entry>
         <oasis:entry colname="col3">7.63</oasis:entry>
         <oasis:entry colname="col4">9.33</oasis:entry>
         <oasis:entry colname="col5">17.65</oasis:entry>
         <oasis:entry colname="col6">27.79</oasis:entry>
         <oasis:entry colname="col7">0.64</oasis:entry>
         <oasis:entry colname="col8">32.2</oasis:entry>
         <oasis:entry colname="col9">12.61</oasis:entry>
         <oasis:entry colname="col10">0.26</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (WAS)</oasis:entry>
         <oasis:entry colname="col2">334</oasis:entry>
         <oasis:entry colname="col3">369.47</oasis:entry>
         <oasis:entry colname="col4">191.54</oasis:entry>
         <oasis:entry colname="col5">550.41</oasis:entry>
         <oasis:entry colname="col6">375.48</oasis:entry>
         <oasis:entry colname="col7">0.79</oasis:entry>
         <oasis:entry colname="col8">86.5</oasis:entry>
         <oasis:entry colname="col9">195.09</oasis:entry>
         <oasis:entry colname="col10">0.87</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (WAS)</oasis:entry>
         <oasis:entry colname="col2">30</oasis:entry>
         <oasis:entry colname="col3">0.74</oasis:entry>
         <oasis:entry colname="col4">0.82</oasis:entry>
         <oasis:entry colname="col5">7.77</oasis:entry>
         <oasis:entry colname="col6">7.33</oasis:entry>
         <oasis:entry colname="col7">0.11</oasis:entry>
         <oasis:entry colname="col8">0.0</oasis:entry>
         <oasis:entry colname="col9">7.03</oasis:entry>
         <oasis:entry colname="col10">0.54</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (WAS)</oasis:entry>
         <oasis:entry colname="col2">330</oasis:entry>
         <oasis:entry colname="col3">48.38</oasis:entry>
         <oasis:entry colname="col4">65.63</oasis:entry>
         <oasis:entry colname="col5">83.64</oasis:entry>
         <oasis:entry colname="col6">130.04</oasis:entry>
         <oasis:entry colname="col7">0.97</oasis:entry>
         <oasis:entry colname="col8">61.5</oasis:entry>
         <oasis:entry colname="col9">44.92</oasis:entry>
         <oasis:entry colname="col10">0.87</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (TOGA)</oasis:entry>
         <oasis:entry colname="col2">331</oasis:entry>
         <oasis:entry colname="col3">417.38</oasis:entry>
         <oasis:entry colname="col4">127.29</oasis:entry>
         <oasis:entry colname="col5">370.67</oasis:entry>
         <oasis:entry colname="col6">259.18</oasis:entry>
         <oasis:entry colname="col7">2.37</oasis:entry>
         <oasis:entry colname="col8">74.3</oasis:entry>
         <oasis:entry colname="col9">163.93</oasis:entry>
         <oasis:entry colname="col10">0.6</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M99" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> (TOGA)</oasis:entry>
         <oasis:entry colname="col2">333</oasis:entry>
         <oasis:entry colname="col3">372.0</oasis:entry>
         <oasis:entry colname="col4">186.19</oasis:entry>
         <oasis:entry colname="col5">601.5</oasis:entry>
         <oasis:entry colname="col6">393.94</oasis:entry>
         <oasis:entry colname="col7">1.02</oasis:entry>
         <oasis:entry colname="col8">64.0</oasis:entry>
         <oasis:entry colname="col9">292.98</oasis:entry>
         <oasis:entry colname="col10">0.5</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OOH</mml:mi></mml:mrow></mml:math></inline-formula> (CIT-CIMS)</oasis:entry>
         <oasis:entry colname="col2">306</oasis:entry>
         <oasis:entry colname="col3">161.03</oasis:entry>
         <oasis:entry colname="col4">143.64</oasis:entry>
         <oasis:entry colname="col5">419.17</oasis:entry>
         <oasis:entry colname="col6">412.65</oasis:entry>
         <oasis:entry colname="col7">0.47</oasis:entry>
         <oasis:entry colname="col8">33.0</oasis:entry>
         <oasis:entry colname="col9">259.92</oasis:entry>
         <oasis:entry colname="col10">0.89</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M101" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCHO</mml:mi></mml:mrow></mml:math></inline-formula> (TOGA)</oasis:entry>
         <oasis:entry colname="col2">321</oasis:entry>
         <oasis:entry colname="col3">102.31</oasis:entry>
         <oasis:entry colname="col4">82.41</oasis:entry>
         <oasis:entry colname="col5">156.88</oasis:entry>
         <oasis:entry colname="col6">106.11</oasis:entry>
         <oasis:entry colname="col7">0.63</oasis:entry>
         <oasis:entry colname="col8">73.2</oasis:entry>
         <oasis:entry colname="col9">55.81</oasis:entry>
         <oasis:entry colname="col10">0.92</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> (NOAACIMS)</oasis:entry>
         <oasis:entry colname="col2">168</oasis:entry>
         <oasis:entry colname="col3">39.44</oasis:entry>
         <oasis:entry colname="col4">21.43</oasis:entry>
         <oasis:entry colname="col5">188.59</oasis:entry>
         <oasis:entry colname="col6">359.94</oasis:entry>
         <oasis:entry colname="col7">0.61</oasis:entry>
         <oasis:entry colname="col8">35.7</oasis:entry>
         <oasis:entry colname="col9">155.87</oasis:entry>
         <oasis:entry colname="col10">0.3</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M103" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (CIT-CIMS)</oasis:entry>
         <oasis:entry colname="col2">334</oasis:entry>
         <oasis:entry colname="col3">207.64</oasis:entry>
         <oasis:entry colname="col4">350.83</oasis:entry>
         <oasis:entry colname="col5">121.83</oasis:entry>
         <oasis:entry colname="col6">259.36</oasis:entry>
         <oasis:entry colname="col7">2.98</oasis:entry>
         <oasis:entry colname="col8">42.5</oasis:entry>
         <oasis:entry colname="col9">127.17</oasis:entry>
         <oasis:entry colname="col10">0.69</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (CIT-CIMS)</oasis:entry>
         <oasis:entry colname="col2">334</oasis:entry>
         <oasis:entry colname="col3">470.86</oasis:entry>
         <oasis:entry colname="col4">444.63</oasis:entry>
         <oasis:entry colname="col5">363.72</oasis:entry>
         <oasis:entry colname="col6">397.68</oasis:entry>
         <oasis:entry colname="col7">2.11</oasis:entry>
         <oasis:entry colname="col8">68.9</oasis:entry>
         <oasis:entry colname="col9">153.47</oasis:entry>
         <oasis:entry colname="col10">0.87</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula> (GTCIMS)</oasis:entry>
         <oasis:entry colname="col2">241</oasis:entry>
         <oasis:entry colname="col3">30.71</oasis:entry>
         <oasis:entry colname="col4">34.7</oasis:entry>
         <oasis:entry colname="col5">75.43</oasis:entry>
         <oasis:entry colname="col6">51.33</oasis:entry>
         <oasis:entry colname="col7">0.54</oasis:entry>
         <oasis:entry colname="col8">36.5</oasis:entry>
         <oasis:entry colname="col9">50.13</oasis:entry>
         <oasis:entry colname="col10">0.38</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">334</oasis:entry>
         <oasis:entry colname="col3">88.26</oasis:entry>
         <oasis:entry colname="col4">113.49</oasis:entry>
         <oasis:entry colname="col5">66.01</oasis:entry>
         <oasis:entry colname="col6">80.95</oasis:entry>
         <oasis:entry colname="col7">1.37</oasis:entry>
         <oasis:entry colname="col8">92.5</oasis:entry>
         <oasis:entry colname="col9">26.5</oasis:entry>
         <oasis:entry colname="col10">0.89</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">i-<inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (TOGA)</oasis:entry>
         <oasis:entry colname="col2">319</oasis:entry>
         <oasis:entry colname="col3">6.88</oasis:entry>
         <oasis:entry colname="col4">13.72</oasis:entry>
         <oasis:entry colname="col5">9.71</oasis:entry>
         <oasis:entry colname="col6">18.63</oasis:entry>
         <oasis:entry colname="col7">0.83</oasis:entry>
         <oasis:entry colname="col8">52.7</oasis:entry>
         <oasis:entry colname="col9">4.94</oasis:entry>
         <oasis:entry colname="col10">0.89</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">n-<inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>​​​​​​​ (TOGA)</oasis:entry>
         <oasis:entry colname="col2">316</oasis:entry>
         <oasis:entry colname="col3">15.79</oasis:entry>
         <oasis:entry colname="col4">31.81</oasis:entry>
         <oasis:entry colname="col5">17.14</oasis:entry>
         <oasis:entry colname="col6">33.62</oasis:entry>
         <oasis:entry colname="col7">1.17</oasis:entry>
         <oasis:entry colname="col8">58.5</oasis:entry>
         <oasis:entry colname="col9">8.41</oasis:entry>
         <oasis:entry colname="col10">0.89</oasis:entry>
         <oasis:entry colname="col11"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><?xmltex \currentcnt{3}?><label>Table 3</label><caption><p id="d1e3840">The same as Table <xref ref-type="table" rid="Ch1.T2"/> but for the comparison of our simulation
results to the dataset of <xref ref-type="bibr" rid="bib1.bibx27" id="text.96"/>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Species</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M110" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>.points</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M111" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">MSTD</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M112" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">OSTD</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M113" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8">PF2</oasis:entry>
         <oasis:entry colname="col9">RMSE</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">457</oasis:entry>
         <oasis:entry colname="col3">90.41</oasis:entry>
         <oasis:entry colname="col4">32.63</oasis:entry>
         <oasis:entry colname="col5">94.86</oasis:entry>
         <oasis:entry colname="col6">72.11</oasis:entry>
         <oasis:entry colname="col7">1.03</oasis:entry>
         <oasis:entry colname="col8">99.3</oasis:entry>
         <oasis:entry colname="col9">63.991</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">454</oasis:entry>
         <oasis:entry colname="col3">25.16</oasis:entry>
         <oasis:entry colname="col4">139.23</oasis:entry>
         <oasis:entry colname="col5">45.93</oasis:entry>
         <oasis:entry colname="col6">175.49</oasis:entry>
         <oasis:entry colname="col7">1.06</oasis:entry>
         <oasis:entry colname="col8">45.2</oasis:entry>
         <oasis:entry colname="col9">110.05</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">473</oasis:entry>
         <oasis:entry colname="col3">539.19</oasis:entry>
         <oasis:entry colname="col4">320.22</oasis:entry>
         <oasis:entry colname="col5">826.09</oasis:entry>
         <oasis:entry colname="col6">544.14</oasis:entry>
         <oasis:entry colname="col7">0.70</oasis:entry>
         <oasis:entry colname="col8">88.8</oasis:entry>
         <oasis:entry colname="col9">409.24</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M117" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">332</oasis:entry>
         <oasis:entry colname="col3">6.25</oasis:entry>
         <oasis:entry colname="col4">63.13</oasis:entry>
         <oasis:entry colname="col5">13.70</oasis:entry>
         <oasis:entry colname="col6">53.09</oasis:entry>
         <oasis:entry colname="col7">0.40</oasis:entry>
         <oasis:entry colname="col8">6.9</oasis:entry>
         <oasis:entry colname="col9">32.64</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M118" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">472</oasis:entry>
         <oasis:entry colname="col3">94.96</oasis:entry>
         <oasis:entry colname="col4">123.26</oasis:entry>
         <oasis:entry colname="col5">164.99</oasis:entry>
         <oasis:entry colname="col6">225.57</oasis:entry>
         <oasis:entry colname="col7">0.89</oasis:entry>
         <oasis:entry colname="col8">59.7</oasis:entry>
         <oasis:entry colname="col9">149.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">246</oasis:entry>
         <oasis:entry colname="col3">520.61</oasis:entry>
         <oasis:entry colname="col4">274.71</oasis:entry>
         <oasis:entry colname="col5">608.50</oasis:entry>
         <oasis:entry colname="col6">310.84</oasis:entry>
         <oasis:entry colname="col7">0.92</oasis:entry>
         <oasis:entry colname="col8">87.4</oasis:entry>
         <oasis:entry colname="col9">291.65</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">37</oasis:entry>
         <oasis:entry colname="col3">595.76</oasis:entry>
         <oasis:entry colname="col4">369.59</oasis:entry>
         <oasis:entry colname="col5">913.86</oasis:entry>
         <oasis:entry colname="col6">373.06</oasis:entry>
         <oasis:entry colname="col7">0.66</oasis:entry>
         <oasis:entry colname="col8">78.4</oasis:entry>
         <oasis:entry colname="col9">426.52</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OOH</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">366</oasis:entry>
         <oasis:entry colname="col3">210.71</oasis:entry>
         <oasis:entry colname="col4">190.79</oasis:entry>
         <oasis:entry colname="col5">376.80</oasis:entry>
         <oasis:entry colname="col6">321.19</oasis:entry>
         <oasis:entry colname="col7">0.66</oasis:entry>
         <oasis:entry colname="col8">52.7</oasis:entry>
         <oasis:entry colname="col9">251.34</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M122" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCHO</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">213</oasis:entry>
         <oasis:entry colname="col3">198.08</oasis:entry>
         <oasis:entry colname="col4">377.76</oasis:entry>
         <oasis:entry colname="col5">192.24</oasis:entry>
         <oasis:entry colname="col6">299.65</oasis:entry>
         <oasis:entry colname="col7">1.44</oasis:entry>
         <oasis:entry colname="col8">64.3</oasis:entry>
         <oasis:entry colname="col9">235.36</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M123" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">53</oasis:entry>
         <oasis:entry colname="col3">32.67</oasis:entry>
         <oasis:entry colname="col4">7.05</oasis:entry>
         <oasis:entry colname="col5">58.92</oasis:entry>
         <oasis:entry colname="col6">43.55</oasis:entry>
         <oasis:entry colname="col7">0.87</oasis:entry>
         <oasis:entry colname="col8">64.1</oasis:entry>
         <oasis:entry colname="col9">49.41</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">53</oasis:entry>
         <oasis:entry colname="col3">13.50</oasis:entry>
         <oasis:entry colname="col4">7.08</oasis:entry>
         <oasis:entry colname="col5">51.08</oasis:entry>
         <oasis:entry colname="col6">28.31</oasis:entry>
         <oasis:entry colname="col7">0.34</oasis:entry>
         <oasis:entry colname="col8">20.7</oasis:entry>
         <oasis:entry colname="col9">46.51</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M125" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">416</oasis:entry>
         <oasis:entry colname="col3">151.33</oasis:entry>
         <oasis:entry colname="col4">188.49</oasis:entry>
         <oasis:entry colname="col5">162.15</oasis:entry>
         <oasis:entry colname="col6">285.72</oasis:entry>
         <oasis:entry colname="col7">1.25</oasis:entry>
         <oasis:entry colname="col8">59.9</oasis:entry>
         <oasis:entry colname="col9">237.42</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M126" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">411</oasis:entry>
         <oasis:entry colname="col3">634.08</oasis:entry>
         <oasis:entry colname="col4">611.96</oasis:entry>
         <oasis:entry colname="col5">745.48</oasis:entry>
         <oasis:entry colname="col6">875.21</oasis:entry>
         <oasis:entry colname="col7">1.09</oasis:entry>
         <oasis:entry colname="col8">80.0</oasis:entry>
         <oasis:entry colname="col9">516.44</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">395</oasis:entry>
         <oasis:entry colname="col3">62.46</oasis:entry>
         <oasis:entry colname="col4">71.30</oasis:entry>
         <oasis:entry colname="col5">162.60</oasis:entry>
         <oasis:entry colname="col6">186.81</oasis:entry>
         <oasis:entry colname="col7">0.61</oasis:entry>
         <oasis:entry colname="col8">40.0</oasis:entry>
         <oasis:entry colname="col9">185.79</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">506</oasis:entry>
         <oasis:entry colname="col3">68.23</oasis:entry>
         <oasis:entry colname="col4">76.00</oasis:entry>
         <oasis:entry colname="col5">51.06</oasis:entry>
         <oasis:entry colname="col6">26.10</oasis:entry>
         <oasis:entry colname="col7">1.31</oasis:entry>
         <oasis:entry colname="col8">92.6</oasis:entry>
         <oasis:entry colname="col9">62.54</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e4574">Scattered simulated values of <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OOH</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCHO</mml:mi></mml:mrow></mml:math></inline-formula> against the observations of the ATom measurements. The different colours represent the altitude. Both species are generally underestimated by our simulations, but at the same time there is a high correlation between the simulation and observations.
</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f03.png"/>

      </fig>

      <p id="d1e4604"><?xmltex \hack{\newpage}?><inline-formula><mml:math id="M131" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are very well represented because
more than 85 % of the simulated values are within a factor of 2 compared to the observations
for these species (PF2).
Other species (such as <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula>) show insufficient agreement with both observation sets,
while other species do not show consistent behaviour between the comparisons.
For some species (such as the alkene <inline-formula><mml:math id="M135" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the Emmons database),
a general clear underestimation is seen in the Emmons database,
which is coherent with previous results <xref ref-type="bibr" rid="bib1.bibx111" id="paren.97"/>.
An interesting feature can be observed for methyl hydroperoxide (<inline-formula><mml:math id="M136" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OOH</mml:mi></mml:mrow></mml:math></inline-formula>) and formaldehyde (<inline-formula><mml:math id="M137" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCHO</mml:mi></mml:mrow></mml:math></inline-formula>):
both species are strongly underestimated by the simulation compared to the ATom observations
(see Table <xref ref-type="table" rid="Ch1.T2"/>; <inline-formula><mml:math id="M138" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> of 0.47 and 0.61, respectively),
while they are highly correlated with the observations (<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">0.9</mml:mn></mml:mrow></mml:math></inline-formula>).
Thus, the vertical shape is very well reproduced,
but the sources and sinks seem to be systematically
underestimated and overestimated, respectively.
This feature is depicted in Fig. <xref ref-type="fig" rid="Ch1.F3"/>.
The evaluation results for selected species will be analysed in more detail in the following.</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>CO</title>
      <p id="d1e4728">Figure <xref ref-type="fig" rid="Ch1.F4"/> shows the seasonal (MAM: March, April, May; JJA: June, July, August;
SON: September, October, November; DJF: December, January and February) mean modified EMAC and MOPITT CO vertical column densities (VCDs).
Here, we term it as “modified” EMAC VCDs because MOPITT averaging kernels are applied to the simulated CO profiles to account for the sensitivity of MOPITT.
To highlight the difference in spatial patterns of  EMAC and MOPITT, we also show the absolute bias in the bottom panel.</p>
      <p id="d1e4733">We note that the spatial patterns are in good agreement between simulation and observations.
In particular, the elevated CO background in the outflow regions (over oceans) in the northern hemisphere is well represented during boreal winter (DJF) and spring (MAM).
The outflow region around South America in SON is also simulated well. Over land, a good agreement is found for Europe,
the central and eastern United States, northern Africa, Australia, Russia, and the Indian subcontinent, with a mean bias within <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M141" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
During the biomass burning seasons (JJA in central Africa and north and northeast China and SON in South America),
we observe an overestimation of <inline-formula><mml:math id="M142" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 % by EMAC.
By comparing EMAC's total <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> column densities to IASI <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> satellite retrievals, <xref ref-type="bibr" rid="bib1.bibx124" id="text.98"/>
found that EMAC underestimates <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> in Indonesia in SON 2015.
In 2015, a particularly strong El Niño led to severe peatland fires,
which resulted in large <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> emissions. <xref ref-type="bibr" rid="bib1.bibx124" id="text.99"/> attribute the underestimation
to a too low biomass burning emission factor for peatland used by EMAC. Here, we do not find any underestimation
of <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> in Indonesia in SON (see Fig. <xref ref-type="fig" rid="Ch1.F4"/>), as the year 2010 was a year
with low biomass burning emissions in Indonesia <xref ref-type="bibr" rid="bib1.bibx148" id="paren.100"/>.
Following their analysis, the recent biomass burning emission factor estimate by <xref ref-type="bibr" rid="bib1.bibx4" id="text.101"/>
suggests that EMAC underestimates the <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> emission factor by about 10 % in central South America and Africa.
It must however be stressed that the uncertainties in the biomass burning emissions are substantial, depending on
regions and species <xref ref-type="bibr" rid="bib1.bibx14" id="paren.102"/>.
In contrast, in South America the overprediction of EMAC's <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> column densities can be partially attributed
to EMAC's tendency to overestimate biogenic emissions of <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> precursors
in this region (see <xref ref-type="bibr" rid="bib1.bibx125 bib1.bibx124" id="altparen.103"/>),
as also shown in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2.SSS3"/> and <xref ref-type="sec" rid="Ch1.S4.SS2.SSS4"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e4872">Global seasonal mean maps of CO vertical column densities (VCDs) for the year 2010 for EMAC (top), MOPITT (middle) and bias (EMAC <inline-formula><mml:math id="M151" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> MOPITT) (bottom).</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f04.png"/>

        </fig>

      <p id="d1e4889">Figure <xref ref-type="fig" rid="Ch1.F5"/> shows the 2010 annual mean measured and simulated surface CO mixing ratio at the WDCGG stations sorted according to their latitude coordinates.
The relative bias at all stations is also shown on a global map in the inset of Fig. <xref ref-type="fig" rid="Ch1.F5"/>.
Similar latitudinal gradients are seen for the measurements and simulations with high values around the mid-latitudes of the Northern Hemisphere.
The measured and simulated CO agree within 1<inline-formula><mml:math id="M152" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> annual variability for 106 out of 113 stations for which data were available for the year 2010.
The bias between model and simulation was found to be less than 20 % of the observations for 96 stations.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e4905">Latitudinal gradient of the annual mean (2010) of the measured and simulated surface CO mixing ratio at the WDCGG measurement stations.
The error bars show the 1<inline-formula><mml:math id="M153" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> standard deviation of the annual mean (based on daily mean output).
The map in the inset shows the annual bias between the simulation and measurements at the locations of the WDCGG stations.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Volatile organic compounds</title>
<sec id="Ch1.S4.SS2.SSS1">
  <label>4.2.1</label><?xmltex \opttitle{{$\protect\chem{C_{{2}}}$}--{$\protect\chem{C_{{4}}}$} alkanes}?><title><inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> alkanes</title>
      <p id="d1e4958">Alkanes are VOC ubiquitously present in the atmosphere that are mainly emitted from anthropogenic activities.
In Fig. <xref ref-type="fig" rid="Ch1.F6"/> the scatterplots of model results and in-situ observations from the NOAA/INSTAR database are presented.
The statistic for each plot is summarized in Table <xref ref-type="table" rid="Ch1.T4"/>.
The model seems to reproduce satisfactorily the mixing ratios of the <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> alkanes with more than 98 %, 91 %, 84 % and 79 %
of the simulated values lying within a factor of 2 of the observations for <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, i-<inline-formula><mml:math id="M160" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and n-<inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
respectively.
Furthermore, the average ratios show that
a slight overestimation is present for i-butane and n-butane, whereas the model underestimates
the mixing ratios of ethane and propane.
This is confirmed by the comparison with the <xref ref-type="bibr" rid="bib1.bibx27" id="text.104"/> database (Table <xref ref-type="table" rid="Ch1.T3"/>), which shows that
both ethane and propane are underestimated by the model with respect to the vertical profile as well (column <inline-formula><mml:math id="M162" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>). The comparison with ATom observations (Table <xref ref-type="table" rid="Ch1.T2"/>) also shows an underestimation (albeit smaller) of ethane and propane. However, for i-butane we see a slight underestimation in the evaluation using ATom observations in contrast to the NOAA/INSTAR database.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e5077">Scatterplot of measured and simulated surface alkanes mixing ratios at the NOAA/INSTAAR
measurement stations for the year 2010 (in <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">mol</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). The colour code denotes the latitude of the stations.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f06.png"/>

          </fig>

      <p id="d1e5103">Figure <xref ref-type="fig" rid="Ch1.F6"/> also shows a noticeable underestimation of the
mixing ratios in the region between 30 and 0<inline-formula><mml:math id="M164" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N for propane and the butanes.
This is clearly due to the underestimation of the oceanic emissions, as these stations
(i.e. at Mahe Island, Seychelles (SEY); The American Samoa Observatory (SMO);
Ascension Island, UK (ASC); and Easter Island, Chile (EIC))
are all strongly influenced by oceanic emissions.
It must be pointed out that no oceanic emissions
were included in the simulation for i-<inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and n-<inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> but that these are necessary for a correct representation of butanes,
as already shown previously <xref ref-type="bibr" rid="bib1.bibx114" id="paren.105"/>. However, the underestimation in this region is not present in the comparison to the ATom observations.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><?xmltex \currentcnt{4}?><label>Table 4</label><caption><p id="d1e5156">Summary of simulated and observed mixing ratios of different tracers in the NOAA/INSTAAR database (station observations).
The columns are the same as in Table <xref ref-type="table" rid="Ch1.T3"/>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Species</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M167" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>.points</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M168" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">MSTD</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M169" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">OSTD</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M170" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8">PF2</oasis:entry>
         <oasis:entry colname="col9">RMSE</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">450</oasis:entry>
         <oasis:entry colname="col3">742.54</oasis:entry>
         <oasis:entry colname="col4">551.02</oasis:entry>
         <oasis:entry colname="col5">1038.32</oasis:entry>
         <oasis:entry colname="col6">845.09</oasis:entry>
         <oasis:entry colname="col7">0.77</oasis:entry>
         <oasis:entry colname="col8">98.4</oasis:entry>
         <oasis:entry colname="col9">621.54</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M172" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">447</oasis:entry>
         <oasis:entry colname="col3">262.87</oasis:entry>
         <oasis:entry colname="col4">417.25</oasis:entry>
         <oasis:entry colname="col5">393.13</oasis:entry>
         <oasis:entry colname="col6">745.48</oasis:entry>
         <oasis:entry colname="col7">0.91</oasis:entry>
         <oasis:entry colname="col8">91.5</oasis:entry>
         <oasis:entry colname="col9">755.93</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">i-<inline-formula><mml:math id="M173" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">436</oasis:entry>
         <oasis:entry colname="col3">70.60</oasis:entry>
         <oasis:entry colname="col4">97.44</oasis:entry>
         <oasis:entry colname="col5">73.73</oasis:entry>
         <oasis:entry colname="col6">126.46</oasis:entry>
         <oasis:entry colname="col7">1.23</oasis:entry>
         <oasis:entry colname="col8">84.8</oasis:entry>
         <oasis:entry colname="col9">124.23</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">n-<inline-formula><mml:math id="M174" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">423</oasis:entry>
         <oasis:entry colname="col3">160.49</oasis:entry>
         <oasis:entry colname="col4">231.75</oasis:entry>
         <oasis:entry colname="col5">146.89</oasis:entry>
         <oasis:entry colname="col6">293.97</oasis:entry>
         <oasis:entry colname="col7">1.46</oasis:entry>
         <oasis:entry colname="col8">79.6</oasis:entry>
         <oasis:entry colname="col9">307.80</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S4.SS2.SSS2">
  <label>4.2.2</label><?xmltex \opttitle{{$\protect\chem{C_{{2}}}$}--{$\protect\chem{C_{{3}}}$} alkenes}?><title><inline-formula><mml:math id="M175" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M176" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> alkenes</title>
      <p id="d1e5470">In contrast to alkanes, the alkenes are mostly emitted by the biosphere. The comparison to the ATom campaign can only be based on a very limited number of observations, and thus it will not be covered in this discussion.
As shown in Table <xref ref-type="table" rid="Ch1.T3"/> in the comparisons with the <xref ref-type="bibr" rid="bib1.bibx27" id="text.106"/> database, the numerical simulation of alkenes
diverges more from the observations than the simulated alkanes do.
Both <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M178" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are underestimated compared to the observations
(see the model mean against observed mean comparison in Table <xref ref-type="table" rid="Ch1.T3"/>).
Nevertheless, while <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is reasonably reproduced overall
(the average of the ratios is equal to 1.06; see Table <xref ref-type="table" rid="Ch1.T3"/>),
for <inline-formula><mml:math id="M180" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> a strong underestimation is present
(the average of the ratios is equal to 0.4; see Table <xref ref-type="table" rid="Ch1.T3"/>).
This is shown in Fig. <xref ref-type="fig" rid="Ch1.F7"/>, where examples of
the vertical distribution of <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are shown.
The issues in simulating <inline-formula><mml:math id="M182" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> have been already pointed out by <xref ref-type="bibr" rid="bib1.bibx111" id="text.107"/>,
where similar results were obtained with large underestimation of this tracer.
As alkenes are mostly removed by reaction with OH, there are strong indications
that these reactions are too fast;
in addition, a substantial lack of emissions could be present, for instance from natural sources, as suggested by
<xref ref-type="bibr" rid="bib1.bibx84" id="text.108"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e5592">Vertical profiles of <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (in <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">mol</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
for some selected campaigns from <xref ref-type="bibr" rid="bib1.bibx27" id="text.109"/>.
Asterisks and boxes represent the average and the standard
deviation (with respect to space and time) of the measurements in the region,
respectively. The simulated average is indicated by the red line,
and the corresponding simulated standard deviation
with respect to time and space is indicated by the dashed lines.
The number of measurements is listed on the right-hand side.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f07.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS3">
  <label>4.2.3</label><?xmltex \opttitle{{$\protect\chem{CH_{{3}}OH}$}}?><title>
            <inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e5659"><inline-formula><mml:math id="M186" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> is the most abundant oxygenated VOC in the Earth's atmosphere <xref ref-type="bibr" rid="bib1.bibx134" id="paren.110"/> and is primarily emitted by terrestrial vegetation <xref ref-type="bibr" rid="bib1.bibx60" id="paren.111"/>.
Other sources include biomass burning, the oceans and secondary formation in the troposphere (see, e.g. <xref ref-type="bibr" rid="bib1.bibx93 bib1.bibx135" id="altparen.112"/>).
The annual global distributions of <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> total column densities obtained from the IASI measurements and EMAC of the year 2010, as well as their differences, are presented in Fig. <xref ref-type="fig" rid="Ch1.F8"/>.
Over land, the satellite and model spatial distributions of <inline-formula><mml:math id="M188" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> are relatively consistent,
with the main source regions observed within the tropics (mainly over the Amazon basin and central Africa),
in Southeast Asia, and at Northern Hemisphere mid-latitudes and high latitudes.
However, important differences in magnitude exist.
Over tropical forests, EMAC indeed simulates annual <inline-formula><mml:math id="M189" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> column densities
up to 2 times larger than those retrieved from the IASI observations (3.0–3.5 <inline-formula><mml:math id="M190" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M191" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M192" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
This can be partly ascribed to the high temperature bias that exists in the model over these areas <xref ref-type="bibr" rid="bib1.bibx45" id="paren.113"/>,
which induces an excess of biogenic VOC emissions from the MEGAN submodel due to its high
temperature sensitivity <xref ref-type="bibr" rid="bib1.bibx43" id="paren.114"/>.
This is confirmed by a comparison of the simulated isoprene mixing ratios in
the Amazon rainforest with observations from the AMAZE-08 campaign <xref ref-type="bibr" rid="bib1.bibx89" id="paren.115"/> and
from the ATTO tower <xref ref-type="bibr" rid="bib1.bibx162" id="paren.116"/>.
In comparison to the AMAZE-08 campaign, the simulated isoprene measurements are overestimated
by more than a factor of 3 (<inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mn mathvariant="normal">6.1</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M194" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">mol</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> simulated and <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.9</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">mol</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> observed),
while the overestimation factor for the ATTO tower is on average approximately 1.6,
being higher in February–March and lower in October–November.</p>
      <p id="d1e5832">Furthermore, dry deposition of methanol in tropical rainforests is likely under-represented by the <xref ref-type="bibr" rid="bib1.bibx158" id="text.117"/> approach used here <xref ref-type="bibr" rid="bib1.bibx69" id="paren.118"/>. The potential contribution of an additional non-stomatal pathway favourable under humid conditions <xref ref-type="bibr" rid="bib1.bibx100" id="paren.119"/> has been shown by <xref ref-type="bibr" rid="bib1.bibx26" id="text.120"/> for a less soluble species.
On the other hand, EMAC underestimates the <inline-formula><mml:math id="M197" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> column densities at mid-latitudes and high latitudes of the Northern Hemisphere,
indicating that biogenic and/or biomass burning VOC emissions are too low during summertime in these regions.
The southeastern US is the region in North America where most of the simulated <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> enhancement exists,
driven by substantial biogenic emissions in summertime, while larger column densities are measured by IASI during the same season further northwards in the boreal regions. Over the oceans, EMAC underestimates the observed <inline-formula><mml:math id="M199" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> column densities by <inline-formula><mml:math id="M200" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula>5 <inline-formula><mml:math id="M201" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M202" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M203" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
which might result from an insufficient transport from the continental source regions and/or from missing secondary source(s) (see, e.g. <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx99" id="altparen.121"/>).
This is confirmed by the comparison of model results with the aircraft observations of the ATom campaign and the <xref ref-type="bibr" rid="bib1.bibx27" id="text.122"/> database, where the methanol model mean is considerably lower than the observed one. This is most prominent over Pacific regions in the Northern Hemisphere at lower altitudes, as depicted in Fig. <xref ref-type="fig" rid="Ch1.F9"/>. However, with respect to the vertical profile <inline-formula><mml:math id="M204" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> is not generally underestimated in comparison with the ATom campaign, as it is instead overestimated at higher altitudes and for lower absolute values.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e5953">Annually averaged <inline-formula><mml:math id="M205" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> total column densities (in <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) from IASI satellite observations <bold>(a)</bold> and simulated by EMAC <bold>(b)</bold> and the EMAC-to-IASI column density differences <bold>(c)</bold> for the year 2010.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f08.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e6006">Vertical profiles of <inline-formula><mml:math id="M207" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> of model simulations and ATom observations
over the Pacific region (region 1 in Fig. <xref ref-type="fig" rid="Ch1.F2"/>)
in the Northern Hemisphere, represented by box and whisker plots for altitude bins.
The white line marks the median, the box corresponds to lower and upper quartiles, and
the whiskers represent the 5th and 95th percentiles.
The numbers on the right indicate the number of points of interest
(POI, averaged values for region, flight and altitude) considered
for each altitude bin.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f09.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS4">
  <label>4.2.4</label><?xmltex \opttitle{{$\protect\chem{CH_{{3}}COCH_{{3}}}$}}?><title>
            <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e6055">Acetone is the one of the most abundant oxygenated VOCs in the Earth's atmosphere after <inline-formula><mml:math id="M209" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx134" id="paren.123"/>.
Its sources include the terrestrial vegetation, the oxidation of hydrocarbon precursors of biogenic and anthropogenic origin,
the oceans, and biomass burning (e.g. <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx114 bib1.bibx31" id="altparen.124"/>).
The acetone column densities obtained from the EMAC simulation and the IASI observations
exhibit major discrepancies in terms of global distribution (Fig. <xref ref-type="fig" rid="Ch1.F11"/>).
The satellite instrument detects the largest acetone column densities (up to 2 <inline-formula><mml:math id="M210" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M211" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
at mid-latitudes and high latitudes of the boreal hemisphere, ascribed to important emissions of biogenic precursors during summertime <xref ref-type="bibr" rid="bib1.bibx34" id="paren.125"/>,
but a moderate burden at low latitudes and over the tropical forests.
It is worth noting that this pattern is in agreement with the global acetone measurements
obtained with the ACE-FTS satellite limb sounder <xref ref-type="bibr" rid="bib1.bibx25" id="paren.126"/>.
Conversely, EMAC simulates strong hotspots of acetone within the tropics,
especially over South America and Africa,
with annually averaged column densities larger than 2 <inline-formula><mml:math id="M213" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M214" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M215" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
but underestimates the acetone abundance by up to a factor of 2 in the Northern Hemisphere.
Such a mismatch between satellite and model distributions points to major deficiencies
in the current emission inventories of acetone and its precursors.
For example, the extremely large acetone column densities simulated by EMAC over the Persian Gulf
and the Indo-Gangetic Plain can be attributed
to the highly elevated emissions of propane – an important precursor of acetone – in these regions.
In vegetated regions, an underestimation of acetone dry deposition, accounting for 20 % of the total loss globally
<xref ref-type="bibr" rid="bib1.bibx73" id="paren.127"/>, likely contributes to the mismatch.
According to measurements, significant amounts of acetone are removed during the night through non-stomatal uptake <xref ref-type="bibr" rid="bib1.bibx69 bib1.bibx100" id="paren.128"/>.
However, over remote areas and the oceans, the simulated acetone abundance is consistent with the IASI measurements, with vertical column densities in the range of 0.5–1.0 <inline-formula><mml:math id="M216" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M217" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
The model nevertheless simulates a slight overestimation over the oceans at low latitudes compared to IASI, especially in the outflows of the tropical hotspots.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e6200">The same as Fig. <xref ref-type="fig" rid="Ch1.F9"/> but for <inline-formula><mml:math id="M219" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and for the
region over Canada, Alaska and Greenland (region 7 in Fig. <xref ref-type="fig" rid="Ch1.F2"/>)
for the different ATom campaigns and seasons.
</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f10.png"/>

          </fig>

      <p id="d1e6229">Compared to the ATom observations the model overestimates the mixing ratios,
especially at high altitudes, leading to a large value of <inline-formula><mml:math id="M220" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>,
while the simulated and observed mean are of a comparable magnitude.
However,  74.3 % of the simulated values are still within
a factor of 2 of the observations (see Table <xref ref-type="table" rid="Ch1.T2"/>).
Figure <xref ref-type="fig" rid="Ch1.F10"/> depicts the vertical column densities of observations
and simulations over the northern part of North America and Greenland,
a region where <inline-formula><mml:math id="M221" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is largely underestimated by the model in comparison to IASI.
In Northern Hemisphere summer (July–August; ATom-1) this strong underestimation can also be observed for the ATom observations.
However, for other seasons this is not the case. Overall, simulation results show only a small underestimation for this region.
Compared to the <xref ref-type="bibr" rid="bib1.bibx27" id="text.129"/> database, the model results present a much better agreement,
with only a somewhat small bias (see Table <xref ref-type="table" rid="Ch1.T3"/>).
This apparent agreement with the observations
is due to the uneven distribution of the field campaign present in the observational dataset
(see <xref ref-type="bibr" rid="bib1.bibx27" id="altparen.130"/>, their Fig. 1, and <xref ref-type="bibr" rid="bib1.bibx56" id="text.131"/>, their Fig. 1).
In fact, most of the campaigns in which acetone was measured took place over the ocean,
where the model is correct or slightly overestimates the
total column densities observed by IASI. In contrast, only few campaigns
in the Northern Hemisphere are present in the dataset
(such as ABLE-3B and POLINAT-2) for which the model strongly underestimates the observed values.
As a result of the sparsity of these observations,  Table <xref ref-type="table" rid="Ch1.T3"/> presents
a quite fair agreement between model and aircraft observations, an
agreement which is, however, not corroborated by the more spatially complete comparison with the IASI total column densities.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><?xmltex \def\figurename{Figure}?><label>Figure 11</label><caption><p id="d1e6284">The same as Fig. <xref ref-type="fig" rid="Ch1.F8"/> but for <inline-formula><mml:math id="M222" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f11.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS5">
  <label>4.2.5</label><?xmltex \opttitle{{$\protect\chem{HCOOH}$}}?><title>
            <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e6329">Formic acid is the dominant organic acid in the troposphere and a product of the degradation of a large suite of VOC precursors,
but its observed abundance is generally severely underestimated by state-of-the-art global models (e.g. <xref ref-type="bibr" rid="bib1.bibx95 bib1.bibx108 bib1.bibx136" id="altparen.132"/>).
Similarly, in our simulation the EMAC model largely underestimates the <inline-formula><mml:math id="M224" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> total column densities derived
from the IASI observations by up to a factor of 4, particularly in remote environments
(see Fig. <xref ref-type="fig" rid="Ch1.F12"/>).
Although the two main tropical source regions identified by IASI – the Amazon basin and central Africa – are reproduced by EMAC,
the magnitudes of the simulated <inline-formula><mml:math id="M225" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> column densities are too low in comparison to the satellite measurements.
It also has to be mentioned that the apparent agreement over Amazonia is possibly due to
the high temperature bias in the region and the subsequent excess of simulated isoprene emissions during the dry season.
Over the other source regions (e.g. Southeast Asia and the southeastern US), the model underestimation is more pronounced,
particularly in the Northern Hemisphere.
The large enhancement of <inline-formula><mml:math id="M226" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> column densities observed with IASI over western Russia
(<inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">8</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>),
attributed to the August 2010 wildfires, is not reproduced by EMAC (<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M230" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
and suggests that the biomass burning emissions of VOCs are underestimated.</p>
      <p id="d1e6434">The general underestimation of simulated versus observational data is also
confirmed by the comparison with aircraft observations.
The model strongly underestimates
the observations by the ATom campaign, especially at low altitudes and for high absolute values (see Table <xref ref-type="table" rid="Ch1.T2"/>,
the observed mean is higher by more than a factor of 4 compared to the model mean).
In general, there is very low agreement between simulated values and ATom observations,
as only around 35 % of the simulated values are within a factor of 2 of the observations
and the Pearson correlation coefficient is only 0.3.
Although the underestimation of the model results compared to the <xref ref-type="bibr" rid="bib1.bibx27" id="text.133"/> database
is less apparent, it must be noted that only a limited number of merged data
(53; see Table <xref ref-type="table" rid="Ch1.T3"/>) is
available for the comparison with aircraft observations.
It must be stressed that <xref ref-type="bibr" rid="bib1.bibx36" id="text.134"/> showed
the importance of in-cloud chemistry for this tracer, which is missing
in this study. The lack of adequate in-cloud chemistry
would therefore explain the almost ubiquitous underestimation of this tracer.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><?xmltex \def\figurename{Figure}?><label>Figure 12</label><caption><p id="d1e6449">The same as Fig. <xref ref-type="fig" rid="Ch1.F8"/> but for <inline-formula><mml:math id="M231" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f12.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS6">
  <label>4.2.6</label><?xmltex \opttitle{{$\protect\chem{CH_{{3}}COOH}$}}?><title>
            <inline-formula><mml:math id="M232" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e6490">Acetic acid is the second most abundant carboxylic acid in the troposphere and, based on the IASI
retrievals, presents a spatial pattern, regional seasonality and vertical abundance that resemble those of
<inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx35" id="paren.135"/>.
Like the latter, <inline-formula><mml:math id="M234" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula> is produced from the oxidation of various tropospheric precursors
but has emission factors from biomass burning that are 3 to 10 times larger
than those of <inline-formula><mml:math id="M235" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx4" id="paren.136"/>.
<inline-formula><mml:math id="M236" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula> is more difficult to detect in the infrared IASI spectra, and its retrievals are subject to larger uncertainties, particularly over ocean (see <xref ref-type="bibr" rid="bib1.bibx35" id="altparen.137"/>).
Therefore, here we limit the comparison with EMAC to the continents,
excluding measurements over desert areas that are altered by surface emissivity artefacts (Fig. <xref ref-type="fig" rid="Ch1.F13"/>).
From the comparison, conclusions similar to those of <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCOOH</mml:mi></mml:mrow></mml:math></inline-formula> can be drawn for <inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula>:
the two main tropical source regions are relatively well reproduced by EMAC
(with a better agreement over Africa in this case),
whereas the observed <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula> levels are underpredicted in the Northern Hemisphere by up to a factor of 4.
The comparison with aircraft observations (see Table <xref ref-type="table" rid="Ch1.T3"/>) again confirms
this strong underestimation over the ocean as well, as the only campaign in the dataset
including <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula> measurements is the PEM-Tropics-A, which was performed
over the Pacific ocean.</p>
      <p id="d1e6597">These results confirm that the VOC emissions and oxidation pathways
leading to the formation of <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula> in the troposphere are still poorly understood and constrained (e.g. <xref ref-type="bibr" rid="bib1.bibx74 bib1.bibx108" id="altparen.138"/>).
For example, acetaldehyde – a major <inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula> precursor
via its reaction with <inline-formula><mml:math id="M243" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx80" id="paren.139"/> –
is well known to be largely underestimated by global models <xref ref-type="bibr" rid="bib1.bibx94 bib1.bibx156" id="paren.140"/>.
On the other hand, the large model versus observations differences
in Southeast Asia also point to missing emissions from biomass burning.
Finally, in-cloud chemistry could be important in the <inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula>
formation, analogous to formic acid <xref ref-type="bibr" rid="bib1.bibx36" id="paren.141"/>,
and this process could bring model results and observations to a closer agreement.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><?xmltex \currentcnt{13}?><?xmltex \def\figurename{Figure}?><label>Figure 13</label><caption><p id="d1e6662">The same as Fig. <xref ref-type="fig" rid="Ch1.F8"/> but for <inline-formula><mml:math id="M245" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">COOH</mml:mi></mml:mrow></mml:math></inline-formula>. Note that areas above ocean have been excluded.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f13.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS7">
  <label>4.2.7</label><?xmltex \opttitle{{$\protect\chem{PAN}$}}?><title>
            <inline-formula><mml:math id="M246" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e6703">Owing to its complex photochemical sources and its thermal instability,
<inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula> (peroxyacetyl nitrate), the main tropospheric reservoir species of <inline-formula><mml:math id="M248" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
is a very challenging tracer to simulate.
The comparison with the IASI data reveals that the model correctly reproduces
the main spatial patterns of <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula>, with
the source regions and main outflows over the oceans being correct.
However, the model constantly underestimates the observed PAN column densities over the globe.
The satellite column densities are indeed between 2 and 4 times the simulated ones,
with the most pronounced negative bias observed at Northern Hemisphere mid-latitudes and high latitudes.
The same conclusion can be drawn from the comparison with aircraft observations
(Tables <xref ref-type="table" rid="Ch1.T2"/> and <xref ref-type="table" rid="Ch1.T3"/>), for which
the model clearly underestimates the observed mixing ratios consistently using the database from <xref ref-type="bibr" rid="bib1.bibx27" id="text.142"/> and the measurements of the ATom campaign. A closer inspection reveals
that <inline-formula><mml:math id="M250" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula> is especially underestimated in the middle and upper troposphere.
The model–observation discrepancies can mostly be attributed to the
unsatisfactory representation of different VOCs.
For example, we have seen that the model results do not agree with observations
for acetone, which is an important precursor of the peroxyacetyl radical in the free troposphere <xref ref-type="bibr" rid="bib1.bibx32" id="paren.143"/>.
Furthermore, the strongest model underestimation appears to be exactly where <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
the most underestimated, confirming that deficiencies in simulated precursor patterns are the main cause of the PAN biases.
Additionally, sensitivity simulations suggested that the <inline-formula><mml:math id="M252" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula>
formation in global models is more sensitive to the representation of VOCs than the one of <inline-formula><mml:math id="M253" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx32" id="paren.144"/>.
Finally, an insufficient vertical transport of VOCs from the planetary boundary layer
to the free troposphere in the model might also reduce the amount of <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula>
because <inline-formula><mml:math id="M255" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula> is more stable at the lower temperatures of the free troposphere.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><?xmltex \def\figurename{Figure}?><label>Figure 14</label><caption><p id="d1e6809">The same as Fig. <xref ref-type="fig" rid="Ch1.F8"/> but for <inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PAN</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f14.png"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>OH</title>
      <p id="d1e6837">The simulated distribution of the hydroxyl radical (<inline-formula><mml:math id="M257" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>)
is in line with the findings by <xref ref-type="bibr" rid="bib1.bibx81" id="text.145"/> (further denoted as L16),
who earlier thoroughly analysed the MOM performance in EMAC with a setup featuring
a simplified treatment of aerosol microphysics and gas–aerosol partitioning.
The total <inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> turnover (composition of annual production and loss terms,
shown in Fig. <xref ref-type="fig" rid="Ch1.F15"/>) of 234 <inline-formula><mml:math id="M259" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Tmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in 2010 is 7 % less
than that found by L16 and is consistent with the addition of the
explicit treatment of secondary organic formation processes
of aerosols and changes in trace gas emission fluxes.
The <inline-formula><mml:math id="M260" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> production in the VOC- and ROOH-initiated reactions
is 3 % lower in both the free troposphere (FT) and the boundary layer (BL).
This is compensated for by the increased share of primary production
(<inline-formula><mml:math id="M261" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>, via the <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msup><mml:mi mathvariant="normal">D</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M263" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M264" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> pathway),
especially in the BL (4 % increase versus 2 % in the FT).
Regarding the partitioning of the <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> sinks, however,
no substantial changes can be noted (see Fig. <xref ref-type="fig" rid="Ch1.F15"/>b and d).
Together with the reduction of the secondary sources (<inline-formula><mml:math id="M266" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>),
the resulting <inline-formula><mml:math id="M267" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> recycling probability <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>
(defined as <inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi>S</mml:mi><mml:mo>+</mml:mo><mml:mi>P</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>; see details in L16) is established at 59 % and 62 % in the BL and FT, respectively. Being about 5 % lower than the estimate reckoned by L16, such high <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values still signify highly stable (buffered) <inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> concentrations and therefore a likewise stable tropospheric oxidative capacity obtained with this model setup.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><?xmltex \currentcnt{15}?><?xmltex \def\figurename{Figure}?><label>Figure 15</label><caption><p id="d1e7016">Simulated OH production <bold>(a, c)</bold> and sink <bold>(b, d)</bold> by category in the troposphere <bold>(a, b)</bold> and boundary layer <bold>(c, d)</bold> in this study and the study of <xref ref-type="bibr" rid="bib1.bibx81" id="text.146"/> (denoted L16). Values are annual totals (in <inline-formula><mml:math id="M272" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Tmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) for 2010. Percentages denote fractions attributed to particular categories (see L16 for details).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f15.png"/>

        </fig>

      <p id="d1e7058">The simulated annual air-mass-weighted average <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> concentrations are
12.1 (troposphere), 12.0 (FT) and 13.6 (BL) 10<inline-formula><mml:math id="M274" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the year 2010,
which correspond to <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> chemical removal lifetimes of 1.59, 1.78 and 0.53 <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula>, respectively.
The diagnosed tropospheric <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> inter-hemispheric gradient (Northern Hemisphere to Southern Hemisphere ratio, NH / SH) is 1.17, lower than that estimated by L16 (1.20) due to the increased <inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> reactivity via VOC and SOA in the NH and at the lower end of the model estimates reviewed there.
By not being in agreement with the measurement-based estimates suggesting hemispheric symmetry in tropospheric <inline-formula><mml:math id="M280" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx107 bib1.bibx161" id="paren.147"/>, the pronounced asymmetry
in atmospheric models results from asymmetric <inline-formula><mml:math id="M281" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> production due to skewed distributions of <inline-formula><mml:math id="M282" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M283" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> prevailing in the NH and calls for further studies in this direction.</p>
      <p id="d1e7173">Overall, the simulated tropospheric <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> distribution is comparable to that which was thoroughly analysed by L16
with a minor increase in reactivity of up to 5 % when calculated from the changes to the <inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M286" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">MCF</mml:mi></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) lifetimes against removal by OH (<inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>).
The <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) values estimated here are 8.4 and 4.4 years in the FT and BL, respectively;
the tropospheric <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (MCF) value is determined to be 4.9 years.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>Aerosol optical depth</title>
      <p id="d1e7275">In order to evaluate the overall performance of the model in reproducing aerosol distribution,
the AOD at 550 nm simulated by the model is compared to satellite-based and station observations.
Figure <xref ref-type="fig" rid="Ch1.F16"/> shows the annual average AOD of
the simulation and of the observations (satellite).
The distribution is remarkably similar, with the high AOD regions
(northern Africa and Southeast Asia) being well simulated by the
model. Open-ocean AOD of <inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:mo>≃</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula> AOD units are reproduced by the model,
with slightly underestimated AOD over the central
Atlantic (possibly due to slightly underestimated dust outflow from the northern Africa region).
To quantify the model capability to reproduce the AOD, in Fig. <xref ref-type="fig" rid="Ch1.F17"/>
the model daily AODs are compared to the co-located
(in space and time) observations from MODIS and the AERONET instruments (middle and bottom row, respectively).
For comparison, the same scatterplot has been produced comparing MODIS and AERONET directly (top row).
The model has difficulties in reproducing the daily variability of AERONET AOD,
with only 58 % of the simulated AOD within a factor of 2
of the observational data. Even the correlation is considerably low,
with an <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> equal to 0.33. Very similar results are obtained
by comparing the model results to the satellite AOD observations,
with again only 57 % of the simulated data within a factor of 2 of the observations.
Once monthly averages are used for the inter-comparison,
the statistics remain almost unchanged with just a small improvement in the slope of the fitting
curve (see Fig. <xref ref-type="fig" rid="Ch1.F17"/>, central column).
Finally, using the annual averages for the intercomparison, the coefficients of determination
<inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> almost double (0.633 and 0.567 for the comparison of the model
with MODIS and AERONET data, respectively), while more than 80 %
of the model results are within a factor of 2 of the observations (either satellite or in situ).
To put these results into context, the same analysis has been performed comparing
the MODIS data and AERONET stations.
Although the satellite observations (slightly) outperform the model results compared to the AERONET-measured AOD
in the case of the daily and monthly averages,
for the annual averages the model seems to perform equally well,
with a similar coefficient of determination and a
fraction of values within a factor of 2 of the observations.
Due to the intrinsic characteristics of the model
(such as its relatively coarse resolution)
it is not expected to have a good representation of the short-term
variability.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16"><?xmltex \currentcnt{16}?><?xmltex \def\figurename{Figure}?><label>Figure 16</label><caption><p id="d1e7319">Global map of AOD from model results and the MODIS observations for the year 2010 (annual average).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f16.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F17" specific-use="star"><?xmltex \currentcnt{17}?><?xmltex \def\figurename{Figure}?><label>Figure 17</label><caption><p id="d1e7330">Scatterplots of AOD estimated by the EMAC model in this study versus the MODIS and the AERONET observations.
The left, middle and right columns show scatterplots using daily, monthly and annual averages, respectively.
Both model- and satellite-based observations were sampled at the AERONET locations.
In each plot the coefficients of the linear fit, the coefficient of determination and the fraction of data within a factor of 2 are listed.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f17.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS5">
  <label>4.5</label><?xmltex \opttitle{Fine particulate matter ({$\protect\chem{PM_{{2.5}}}$})}?><title>Fine particulate matter (<inline-formula><mml:math id="M295" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)</title>
      <p id="d1e7360">The comparison of model results for <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (i.e. fine particles
with an aerodynamic diameter smaller than 2.5 <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>)
was performed against the dataset of <xref ref-type="bibr" rid="bib1.bibx46" id="text.148"/>.
Although this dataset is not a pure observational dataset,
it has a global coverage and has been constrained from in situ measurements.
The comparison is done for <inline-formula><mml:math id="M298" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at 35 % relative humidity,
i.e. dry fine particulate mass (in <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
In Fig. <xref ref-type="fig" rid="Ch1.F18"/>, the maps of the annual average of the model
results and the pseudo-observation dataset are shown.
Although the distribution patterns appear to be similar,
the model underestimates  the fine particle concentration
over northern India and eastern China, whereas the opposite
happens over eastern Africa and the Middle East.
On the other hand, the model seems to reproduce <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> quite accurately over both Europe and North America,
and even the locally  enhanced levels of <inline-formula><mml:math id="M301" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M303" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
in Canada from boreal forest biomass burning
are reproduced well by the model.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F18"><?xmltex \currentcnt{18}?><?xmltex \def\figurename{Figure}?><label>Figure 18</label><caption><p id="d1e7473">Global map of <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from model results and the <xref ref-type="bibr" rid="bib1.bibx46" id="text.149"/> dataset for the year 2010 (annual average, in <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
The data from <xref ref-type="bibr" rid="bib1.bibx46" id="text.150"/> does not contain values over the ocean.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f18.png"/>

        </fig>

      <p id="d1e7518">In Fig. <xref ref-type="fig" rid="Ch1.F19"/>, the scatterplot of the two datasets
is shown, while in Table <xref ref-type="table" rid="Ch1.T5"/> the statistics for the different
regions presented in the figures are listed. Due to the large grid resolution difference,
the pseudo-observations have been aggregated to the grid resolution of the model.
As already noted from the global map, the model underestimates <inline-formula><mml:math id="M306" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
over South Asia and East Asia by <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula>, respectively.
Nevertheless, in both regions more than 70 % of the model results are within a factor of 2 of the pseudo-observations.
As shown by <xref ref-type="bibr" rid="bib1.bibx115 bib1.bibx117" id="text.151"/> and more recently by <xref ref-type="bibr" rid="bib1.bibx91" id="text.152"/>,
BC and OC are very important for the <inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> budget in East Asia and South Asia.
As shown by <xref ref-type="bibr" rid="bib1.bibx16" id="text.153"/> and <xref ref-type="bibr" rid="bib1.bibx128" id="text.154"/> the emissions of these tracers
are associated with large uncertainties in these regions, which could strongly affect our results.
However, the model agrees well with data from Europe and North America,  with more than 95 % of the model results being
within a factor of 2. The overall comparison indicates that the model agrees well with the pseudo-observations,
as the spatiotemporal averages of the two datasets are very close (17.1 <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the model
and 19.4 <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the pseudo-observations),
with more than 70 % of the model-simulated <inline-formula><mml:math id="M312" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> within a factor of 2 of the pseudo-observed <inline-formula><mml:math id="M313" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F19"><?xmltex \currentcnt{19}?><?xmltex \def\figurename{Figure}?><label>Figure 19</label><caption><p id="d1e7650">Scatterplots of <inline-formula><mml:math id="M314" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> of model results versus data from <xref ref-type="bibr" rid="bib1.bibx46" id="text.155"/> for the year 2010 (annual average, in <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
Light blue, red, green and orange depict points located in Europe, North America, East Asia and South Asia, respectively.
Grey points indicate the remaining parts of the world.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f19.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5"><?xmltex \currentcnt{5}?><label>Table 5</label><caption><p id="d1e7695">Summary for simulated and pseudo-observed
annually averaged <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.
<inline-formula><mml:math id="M317" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> and <inline-formula><mml:math id="M318" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> denote the arithmetic mean of the simulated and observed concentrations, respectively (in <inline-formula><mml:math id="M319" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
PF2 is the percentage of simulated points within a factor of 2 with respect to the observations.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Region</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M320" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M321" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M322" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">PF2</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Europe</oasis:entry>
         <oasis:entry colname="col2">11.3</oasis:entry>
         <oasis:entry colname="col3">14.3</oasis:entry>
         <oasis:entry colname="col4">0.82</oasis:entry>
         <oasis:entry colname="col5">98.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">North America</oasis:entry>
         <oasis:entry colname="col2">4.6</oasis:entry>
         <oasis:entry colname="col3">5.2</oasis:entry>
         <oasis:entry colname="col4">0.84</oasis:entry>
         <oasis:entry colname="col5">85.0</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">South Asia</oasis:entry>
         <oasis:entry colname="col2">30.9</oasis:entry>
         <oasis:entry colname="col3">50.3</oasis:entry>
         <oasis:entry colname="col4">0.65</oasis:entry>
         <oasis:entry colname="col5">76.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">East Asia</oasis:entry>
         <oasis:entry colname="col2">31.1</oasis:entry>
         <oasis:entry colname="col3">37.2</oasis:entry>
         <oasis:entry colname="col4">1.09</oasis:entry>
         <oasis:entry colname="col5">83.3</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">World</oasis:entry>
         <oasis:entry colname="col2">17.1</oasis:entry>
         <oasis:entry colname="col3">19.4</oasis:entry>
         <oasis:entry colname="col4">0.87</oasis:entry>
         <oasis:entry colname="col5">71.9</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S4.SS6">
  <label>4.6</label><title>Aerosol composition</title>
      <p id="d1e7915">For the evaluation of the simulated mass concentrations of sulfate, nitrate, ammonium,
sodium, and five species related to sea spray and organic aerosols,
we use in situ measurements from different monitoring networks, as described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>.
Co-located time series of simulated and observed quantities were obtained
via bilinear interpolation of the gridded model data at ground level to the respective site location.
The analysis is based on monthly mean concentrations, which are derived from daily
(model data, EMEP observations) and weekly (EPA) data, with the exception of
EANET, which directly provides monthly averages.
Note that some monitoring stations are located relatively close to each other, such that the reported concentrations
may not be independent of each other, which can lead to an overestimation of the degrees
of freedom in the calculation of quantities such as the root-mean-square error.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T6" specific-use="star"><?xmltex \currentcnt{6}?><label>Table 6</label><caption><p id="d1e7923">Summary of simulated and observed monthly averaged aerosol concentrations
for <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M324" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M326" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Na</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mg</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M328" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Ca</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">K</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Cl</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and organic aerosols (OA)
and different observational networks (second column). <inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">station</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the number of stations providing data
for the respective species and network; note that this is not the sample size for the shown statistics.
The following columns provide the arithmetic mean of the simulated (<inline-formula><mml:math id="M332" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>) and observed concentrations (<inline-formula><mml:math id="M333" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>)
and the respective standard deviations (MSTD, OSTD, in <inline-formula><mml:math id="M334" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
PF2 denotes the percentage of simulated points within a factor of 2 with respect to the observations,
and RMSE represents the root-mean-square error between simulated and observed points.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="10">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Species</oasis:entry>
         <oasis:entry colname="col2">Network</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">station</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M336" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">MSTD</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M337" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">OSTD</oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M338" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col9">PF2</oasis:entry>
         <oasis:entry colname="col10">RMSE</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">SO<inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">1.92</oasis:entry>
         <oasis:entry colname="col5">0.99</oasis:entry>
         <oasis:entry colname="col6">1.88</oasis:entry>
         <oasis:entry colname="col7">1.20</oasis:entry>
         <oasis:entry colname="col8">1.35</oasis:entry>
         <oasis:entry colname="col9">84.3</oasis:entry>
         <oasis:entry colname="col10">0.93</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SO<inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">42</oasis:entry>
         <oasis:entry colname="col4">1.68</oasis:entry>
         <oasis:entry colname="col5">1.05</oasis:entry>
         <oasis:entry colname="col6">1.79</oasis:entry>
         <oasis:entry colname="col7">1.21</oasis:entry>
         <oasis:entry colname="col8">1.37</oasis:entry>
         <oasis:entry colname="col9">83.7</oasis:entry>
         <oasis:entry colname="col10">0.95</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SO<inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">25</oasis:entry>
         <oasis:entry colname="col4">2.83</oasis:entry>
         <oasis:entry colname="col5">1.65</oasis:entry>
         <oasis:entry colname="col6">3.58</oasis:entry>
         <oasis:entry colname="col7">4.06</oasis:entry>
         <oasis:entry colname="col8">1.58</oasis:entry>
         <oasis:entry colname="col9">71.0</oasis:entry>
         <oasis:entry colname="col10">3.49</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NO<inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">1.89</oasis:entry>
         <oasis:entry colname="col5">1.97</oasis:entry>
         <oasis:entry colname="col6">0.77</oasis:entry>
         <oasis:entry colname="col7">1.07</oasis:entry>
         <oasis:entry colname="col8">4.29</oasis:entry>
         <oasis:entry colname="col9">36.9</oasis:entry>
         <oasis:entry colname="col10">1.88</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NO<inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">22</oasis:entry>
         <oasis:entry colname="col4">3.34</oasis:entry>
         <oasis:entry colname="col5">2.89</oasis:entry>
         <oasis:entry colname="col6">1.93</oasis:entry>
         <oasis:entry colname="col7">2.15</oasis:entry>
         <oasis:entry colname="col8">3.75</oasis:entry>
         <oasis:entry colname="col9">55.3</oasis:entry>
         <oasis:entry colname="col10">2.97</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NO<inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">23</oasis:entry>
         <oasis:entry colname="col4">3.34</oasis:entry>
         <oasis:entry colname="col5">3.34</oasis:entry>
         <oasis:entry colname="col6">1.45</oasis:entry>
         <oasis:entry colname="col7">2.43</oasis:entry>
         <oasis:entry colname="col8">8.36</oasis:entry>
         <oasis:entry colname="col9">32.6</oasis:entry>
         <oasis:entry colname="col10">3.47</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NH<inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">1.09</oasis:entry>
         <oasis:entry colname="col5">0.89</oasis:entry>
         <oasis:entry colname="col6">0.73</oasis:entry>
         <oasis:entry colname="col7">0.53</oasis:entry>
         <oasis:entry colname="col8">1.84</oasis:entry>
         <oasis:entry colname="col9">64.8</oasis:entry>
         <oasis:entry colname="col10">0.77</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NH<inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">27</oasis:entry>
         <oasis:entry colname="col4">1.31</oasis:entry>
         <oasis:entry colname="col5">1.17</oasis:entry>
         <oasis:entry colname="col6">0.92</oasis:entry>
         <oasis:entry colname="col7">0.86</oasis:entry>
         <oasis:entry colname="col8">1.69</oasis:entry>
         <oasis:entry colname="col9">62.0</oasis:entry>
         <oasis:entry colname="col10">0.92</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NH<inline-formula><mml:math id="M347" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">23</oasis:entry>
         <oasis:entry colname="col4">1.40</oasis:entry>
         <oasis:entry colname="col5">1.35</oasis:entry>
         <oasis:entry colname="col6">1.00</oasis:entry>
         <oasis:entry colname="col7">1.14</oasis:entry>
         <oasis:entry colname="col8">2.38</oasis:entry>
         <oasis:entry colname="col9">54.7</oasis:entry>
         <oasis:entry colname="col10">1.07</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Na<inline-formula><mml:math id="M348" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">0.16</oasis:entry>
         <oasis:entry colname="col5">0.22</oasis:entry>
         <oasis:entry colname="col6">0.16</oasis:entry>
         <oasis:entry colname="col7">0.36</oasis:entry>
         <oasis:entry colname="col8">2.19</oasis:entry>
         <oasis:entry colname="col9">61.1</oasis:entry>
         <oasis:entry colname="col10">0.23</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Na<inline-formula><mml:math id="M349" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">24</oasis:entry>
         <oasis:entry colname="col4">0.57</oasis:entry>
         <oasis:entry colname="col5">0.43</oasis:entry>
         <oasis:entry colname="col6">0.60</oasis:entry>
         <oasis:entry colname="col7">0.73</oasis:entry>
         <oasis:entry colname="col8">2.03</oasis:entry>
         <oasis:entry colname="col9">53.1</oasis:entry>
         <oasis:entry colname="col10">0.57</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Na<inline-formula><mml:math id="M350" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">21</oasis:entry>
         <oasis:entry colname="col4">0.92</oasis:entry>
         <oasis:entry colname="col5">0.81</oasis:entry>
         <oasis:entry colname="col6">1.22</oasis:entry>
         <oasis:entry colname="col7">1.67</oasis:entry>
         <oasis:entry colname="col8">2.89</oasis:entry>
         <oasis:entry colname="col9">46.8</oasis:entry>
         <oasis:entry colname="col10">1.53</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mg<inline-formula><mml:math id="M351" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">0.05</oasis:entry>
         <oasis:entry colname="col5">0.06</oasis:entry>
         <oasis:entry colname="col6">0.05</oasis:entry>
         <oasis:entry colname="col7">0.05</oasis:entry>
         <oasis:entry colname="col8">2.06</oasis:entry>
         <oasis:entry colname="col9">42.7</oasis:entry>
         <oasis:entry colname="col10">0.06</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mg<inline-formula><mml:math id="M352" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">22</oasis:entry>
         <oasis:entry colname="col4">0.17</oasis:entry>
         <oasis:entry colname="col5">0.13</oasis:entry>
         <oasis:entry colname="col6">0.07</oasis:entry>
         <oasis:entry colname="col7">0.09</oasis:entry>
         <oasis:entry colname="col8">4.65</oasis:entry>
         <oasis:entry colname="col9">32.6</oasis:entry>
         <oasis:entry colname="col10">0.16</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mg<inline-formula><mml:math id="M353" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">15</oasis:entry>
         <oasis:entry colname="col4">0.29</oasis:entry>
         <oasis:entry colname="col5">0.21</oasis:entry>
         <oasis:entry colname="col6">0.24</oasis:entry>
         <oasis:entry colname="col7">0.26</oasis:entry>
         <oasis:entry colname="col8">2.38</oasis:entry>
         <oasis:entry colname="col9">57.8</oasis:entry>
         <oasis:entry colname="col10">0.27</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Ca<inline-formula><mml:math id="M354" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">0.06</oasis:entry>
         <oasis:entry colname="col5">0.12</oasis:entry>
         <oasis:entry colname="col6">0.26</oasis:entry>
         <oasis:entry colname="col7">0.27</oasis:entry>
         <oasis:entry colname="col8">0.60</oasis:entry>
         <oasis:entry colname="col9">16.2</oasis:entry>
         <oasis:entry colname="col10">0.37</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Ca<inline-formula><mml:math id="M355" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">28</oasis:entry>
         <oasis:entry colname="col4">0.14</oasis:entry>
         <oasis:entry colname="col5">0.25</oasis:entry>
         <oasis:entry colname="col6">0.15</oasis:entry>
         <oasis:entry colname="col7">0.25</oasis:entry>
         <oasis:entry colname="col8">1.60</oasis:entry>
         <oasis:entry colname="col9">51.5</oasis:entry>
         <oasis:entry colname="col10">0.24</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Ca<inline-formula><mml:math id="M356" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">19</oasis:entry>
         <oasis:entry colname="col4">0.23</oasis:entry>
         <oasis:entry colname="col5">0.22</oasis:entry>
         <oasis:entry colname="col6">0.75</oasis:entry>
         <oasis:entry colname="col7">1.97</oasis:entry>
         <oasis:entry colname="col8">1.44</oasis:entry>
         <oasis:entry colname="col9">45.2</oasis:entry>
         <oasis:entry colname="col10">2.07</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">K<inline-formula><mml:math id="M357" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">0.03</oasis:entry>
         <oasis:entry colname="col5">0.05</oasis:entry>
         <oasis:entry colname="col6">0.07</oasis:entry>
         <oasis:entry colname="col7">0.04</oasis:entry>
         <oasis:entry colname="col8">0.83</oasis:entry>
         <oasis:entry colname="col9">19.8</oasis:entry>
         <oasis:entry colname="col10">0.08</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">K<inline-formula><mml:math id="M358" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">25</oasis:entry>
         <oasis:entry colname="col4">0.09</oasis:entry>
         <oasis:entry colname="col5">0.13</oasis:entry>
         <oasis:entry colname="col6">0.08</oasis:entry>
         <oasis:entry colname="col7">0.07</oasis:entry>
         <oasis:entry colname="col8">1.42</oasis:entry>
         <oasis:entry colname="col9">60.0</oasis:entry>
         <oasis:entry colname="col10">0.14</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">K<inline-formula><mml:math id="M359" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">20</oasis:entry>
         <oasis:entry colname="col4">0.12</oasis:entry>
         <oasis:entry colname="col5">0.09</oasis:entry>
         <oasis:entry colname="col6">0.26</oasis:entry>
         <oasis:entry colname="col7">0.34</oasis:entry>
         <oasis:entry colname="col8">0.98</oasis:entry>
         <oasis:entry colname="col9">47.1</oasis:entry>
         <oasis:entry colname="col10">0.37</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cl<inline-formula><mml:math id="M360" display="inline"><mml:msup><mml:mi/><mml:mo>-</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EPA</oasis:entry>
         <oasis:entry colname="col3">81</oasis:entry>
         <oasis:entry colname="col4">0.35</oasis:entry>
         <oasis:entry colname="col5">0.65</oasis:entry>
         <oasis:entry colname="col6">0.14</oasis:entry>
         <oasis:entry colname="col7">0.51</oasis:entry>
         <oasis:entry colname="col8">5.92</oasis:entry>
         <oasis:entry colname="col9">24.7</oasis:entry>
         <oasis:entry colname="col10">0.53</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cl<inline-formula><mml:math id="M361" display="inline"><mml:msup><mml:mi/><mml:mo>-</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">24</oasis:entry>
         <oasis:entry colname="col4">2.16</oasis:entry>
         <oasis:entry colname="col5">1.59</oasis:entry>
         <oasis:entry colname="col6">0.86</oasis:entry>
         <oasis:entry colname="col7">1.05</oasis:entry>
         <oasis:entry colname="col8">37.24</oasis:entry>
         <oasis:entry colname="col9">29.5</oasis:entry>
         <oasis:entry colname="col10">1.82</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cl<inline-formula><mml:math id="M362" display="inline"><mml:msup><mml:mi/><mml:mo>-</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">EANET</oasis:entry>
         <oasis:entry colname="col3">17</oasis:entry>
         <oasis:entry colname="col4">2.63</oasis:entry>
         <oasis:entry colname="col5">2.55</oasis:entry>
         <oasis:entry colname="col6">1.90</oasis:entry>
         <oasis:entry colname="col7">2.88</oasis:entry>
         <oasis:entry colname="col8">4.38</oasis:entry>
         <oasis:entry colname="col9">39.2</oasis:entry>
         <oasis:entry colname="col10">2.62</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">OA</oasis:entry>
         <oasis:entry colname="col2">IMPROVE</oasis:entry>
         <oasis:entry colname="col3">155</oasis:entry>
         <oasis:entry colname="col4">1.32</oasis:entry>
         <oasis:entry colname="col5">1.11</oasis:entry>
         <oasis:entry colname="col6">0.92</oasis:entry>
         <oasis:entry colname="col7">0.73</oasis:entry>
         <oasis:entry colname="col8">1.73</oasis:entry>
         <oasis:entry colname="col9">0.65</oasis:entry>
         <oasis:entry colname="col10">1.01</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">OA</oasis:entry>
         <oasis:entry colname="col2">EMEP</oasis:entry>
         <oasis:entry colname="col3">12</oasis:entry>
         <oasis:entry colname="col4">1.43</oasis:entry>
         <oasis:entry colname="col5">0.77</oasis:entry>
         <oasis:entry colname="col6">2.55</oasis:entry>
         <oasis:entry colname="col7">2.27</oasis:entry>
         <oasis:entry colname="col8">0.83</oasis:entry>
         <oasis:entry colname="col9">0.60</oasis:entry>
         <oasis:entry colname="col10">2.35</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">OA</oasis:entry>
         <oasis:entry colname="col2">EASIA</oasis:entry>
         <oasis:entry colname="col3">9</oasis:entry>
         <oasis:entry colname="col4">9.20</oasis:entry>
         <oasis:entry colname="col5">9.91</oasis:entry>
         <oasis:entry colname="col6">16.07</oasis:entry>
         <oasis:entry colname="col7">11.41</oasis:entry>
         <oasis:entry colname="col8">0.51</oasis:entry>
         <oasis:entry colname="col9">0.42</oasis:entry>
         <oasis:entry colname="col10">9.25</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \hack{\newpage}?>
<sec id="Ch1.S4.SS6.SSS1">
  <label>4.6.1</label><?xmltex \opttitle{Sulfate ({$\protect\chem{SO_{{4}}^{{2-}}}$})}?><title>Sulfate (<inline-formula><mml:math id="M363" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>)</title>
      <p id="d1e9381">Observed particulate sulfate concentrations are reproduced well by the model.
The  monthly mean concentration is matched closely for North America (EPA) and
slightly underestimated for Europe (EMEP) and East Asia (EANET)
(see Table <xref ref-type="table" rid="Ch1.T6"/>).
For EPA and EMEP data, more than 80 % of the simulated monthly mean concentrations lie
within a factor of 2 of the observations, as do more than 70 % of the concentrations for EANET.
The standard deviation of observed monthly mean values is lower than the root-mean-square error (RMSE)
for all monitoring networks, which is an indication for a good quality of the model results <xref ref-type="bibr" rid="bib1.bibx8" id="paren.156"/>.
In addition, RMSE is lower in the present study compared to a similar analysis by <xref ref-type="bibr" rid="bib1.bibx115" id="text.157"/> in which a longer time period of 4 years (2005–2008) was investigated. <xref ref-type="bibr" rid="bib1.bibx115" id="text.158"/>
also report a relatively large spread (observation standard deviation equal to 5.3 <inline-formula><mml:math id="M364" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
of the measured sulfate concentrations in EANET,
which is likely caused by a comparably low number of stations that cover a large region with strong spatial gradients.</p>
      <p id="d1e9414">The close overall agreement of average concentrations
simulated by the model (<inline-formula><mml:math id="M365" display="inline"><mml:mover accent="true"><mml:mi>M</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>) with the observations (<inline-formula><mml:math id="M366" display="inline"><mml:mover accent="true"><mml:mi>O</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>) for EPA
can partly be attributed to underestimated high concentrations
in summer (composite of June, July and August, JJA), which are
compensated by overestimated lower concentrations from autumn to spring
(see Fig. <xref ref-type="fig" rid="Ch1.F20"/>).
Relative deviations are largest in winter and autumn, when observed concentrations
are much lower than simulated concentrations.
In Europe (EMEP), the highest concentrations are observed during the winter months,
which is captured by the model.</p>
      <p id="d1e9439">The east–west gradient of observed annual mean concentrations in North America is represented well in the model,
although the amplitude is underestimated by the model:
lower observed values in the west are overestimated, while higher observed concentrations
in the east are underestimated by the model (Fig. <xref ref-type="fig" rid="Ch1.F21"/>).
This feature also led to a good agreement between observed and simulated mean concentrations
in Table <xref ref-type="table" rid="Ch1.T6"/>. The north–south gradient over Europe is also captured by the model.
Despite the less dense spatial distribution of monitoring stations providing data for particulate sulfate,
one can observe a correspondence between simulated and observed annual mean concentrations, especially over Japan.
One outlier in Japan with a very low observed annual mean concentration is located at a relatively high altitude
(Happo, 1850 m), and thus the comparison to model data on ground level may not be appropriate for this station.
The same holds for two EMEP stations, namely Jungfraujoch (Switzerland) at 3578 m,
and Chopok (Slovakia) at 2008 m,
where annual mean concentrations are largely overestimated, possibly due to the coarse resolution
of the model, which cannot correctly reproduce the orography (and hence the altitude) of these stations.
We therefore compared <inline-formula><mml:math id="M367" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations with observations from aircraft campaigns,
as compiled by <xref ref-type="bibr" rid="bib1.bibx50" id="text.159"/>. The results are presented in Fig. <xref ref-type="fig" rid="Ch1.F22"/>.
The simulated sulfate concentrations agree well with the aircraft observations in the
free and lower troposphere, with an underestimation in a few cases (see Fig. <xref ref-type="fig" rid="Ch1.F22"/>; during the
ITCT-2K4, ADIENT or IMPEX campaigns) but always within the measured standard deviations,
confirming that the vertical profile of sulfate is generally well reproduced in the lower troposphere.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F20" specific-use="star"><?xmltex \currentcnt{20}?><?xmltex \def\figurename{Figure}?><label>Figure 20</label><caption><p id="d1e9473">Scatterplots of observed and simulated monthly average <inline-formula><mml:math id="M368" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations for the year 2010
and three observational networks: EPA, EMEP and EANET <bold>(a–c)</bold>.
The colouring of the points represents a categorization into seasons (dark blue: DJF; orange: MAM; red: JJA; light blue: SON);
the seasonal averages of monthly concentrations are depicted as large circles.
Dashed lines denote the interval of a factor of 2 of the observations.
The simulated concentrations were obtained by sampling the modelled data at the respective station locations using bilinear interpolation over neighbouring grid points.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f20.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F21" specific-use="star"><?xmltex \currentcnt{21}?><?xmltex \def\figurename{Figure}?><label>Figure 21</label><caption><p id="d1e9503">Annual mean <inline-formula><mml:math id="M369" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations for the year 2010 for the model
and three observational networks: EPA, EMEP and EANET <bold>(a–c)</bold>.
Simulated data are shown as shaded contours, while the observational data are depicted as circles.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f21.png"/>

          </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F22" specific-use="star"><?xmltex \currentcnt{22}?><?xmltex \def\figurename{Figure}?><label>Figure 22</label><caption><p id="d1e9533">Model results of mean vertical profile of sulfate aerosol for selected field campaigns
in black, and the spatiotemporal standard deviation is shown as a grey area.
The observed mean values are depicted in solid red, with the bars representing the standard
deviation of the observations. The observed median is presented as dashed red line.</p></caption>
            <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f22.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS6.SSS2">
  <label>4.6.2</label><?xmltex \opttitle{Nitrate ({$\protect\chem{NO_{{3}}^{{-}}}$})}?><title>Nitrate (<inline-formula><mml:math id="M370" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>)</title>
      <p id="d1e9564">Nitrate is less well represented than sulfate, showing a general overestimation of observed concentrations
with an average ratio of simulated to observed concentrations of at least 3.75.
This comparably large ratio is dominated by a few stations with small concentrations,
where the median ratios lie between 1.70 and 2.84. About half (EMEP) to two-thirds (EPA, EANET)
of the simulated monthly mean concentrations exceed a factor of 2 with respect to the observations.
For EANET and EMEP, the number of monitoring stations is substantially lower than for EPA,
which may partly explain the larger spread in both the model results and observations (OSTD, MSTD).
The RMSE is larger than the observed standard deviations for all considered networks,
suggesting a less faithful representation of this species. This overestimation may be attributed
to the usage of Teflon filters, as nitrate can evaporate from the filters under warm and dry conditions <xref ref-type="bibr" rid="bib1.bibx3" id="paren.160"/>.
<xref ref-type="bibr" rid="bib1.bibx131" id="text.161"/> and <xref ref-type="bibr" rid="bib1.bibx20" id="text.162"/> showed that particulate ammonium and nitrate
partially evaporate from the filters at temperatures between 15 to 20 <inline-formula><mml:math id="M371" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C
and can evaporate completely at temperatures above 20 <inline-formula><mml:math id="M372" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.
Therefore, this effect predominantly affects measurements during the warmer seasons
when nitrate concentrations are close to the annual minimum.
An indication for overestimation due to evaporation would then be a closer agreement
between model and observation in the colder winter months.
However, both in relative and absolute terms, the overestimation of monthly mean nitrate concentrations
is more pronounced in winter than in summer for the three considered networks (Fig. <xref ref-type="fig" rid="Ch1.F23"/>).
All regions show the same seasonal cycle with respect
to averaged monthly mean concentrations: a maximum in winter and a minimum in summer both for model results and observations.
The spatial gradient of the annual mean concentrations is captured well for North America (EPA),
although the concentrations towards the east coast are generally overestimated.
The low number of monitoring stations for EANET and EMEP does not allow us to draw solid conclusions;
however, we can report that the north–south gradient of nitrate over Europe
is reproduced by the model, with the exception of an outlier at high altitude in Central Europe (Fig. <xref ref-type="fig" rid="Ch1.F24"/>).
The region with the highest simulated annual mean concentrations and strongest spatial gradients is East Asia;
however, it is sparsely covered by monitoring stations reporting full coverage for the considered year 2010.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F23" specific-use="star"><?xmltex \currentcnt{23}?><?xmltex \def\figurename{Figure}?><label>Figure 23</label><caption><p id="d1e9601">The same as Fig. <xref ref-type="fig" rid="Ch1.F20"/> but for <inline-formula><mml:math id="M373" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f23.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F24" specific-use="star"><?xmltex \currentcnt{24}?><?xmltex \def\figurename{Figure}?><label>Figure 24</label><caption><p id="d1e9628">The same as Fig. <xref ref-type="fig" rid="Ch1.F21"/> but for <inline-formula><mml:math id="M374" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f24.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS6.SSS3">
  <label>4.6.3</label><?xmltex \opttitle{Ammonium ({$\protect\chem{NH_{{4}}^{{+}}}$})}?><title>Ammonium (<inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>)</title>
      <p id="d1e9674">Considering the ratio of averaged monthly mean ammonium concentrations,
the model overestimates the observed concentrations but to a lower degree than for nitrate (Table <xref ref-type="table" rid="Ch1.T6"/>).
This feature is also apparent in the fraction of simulated monthly mean values within a factor of 2 of the observations:
54.7 % for the network in East Asia and more than 60 % for Europe and North America.
The magnitude of overestimation is similar for the three networks, ranging from 40 % to 50 %.
RMSE values are close to the standard deviation of observations in all networks, again indicating a good representation by the model.
The largest concentrations occur during the winter months (Fig. <xref ref-type="fig" rid="Ch1.F25"/>).
While the degree of overestimation is similar for the different seasons in EMEP and EANET, this does not hold for EPA:
summer concentrations are systematically underestimated, whereas autumn to spring concentrations are generally overestimated.
The concentrations for winter and spring constitute most of the values that are outside the aforementioned factor of 2 threshold regarding the observations for all considered regions.
Both the observed north–south and east–west gradients of annual mean concentrations are represented well for the EPA network
(Fig. <xref ref-type="fig" rid="Ch1.F26"/>), but the simulated gradient is less pronounced.</p>
      <p id="d1e9683">The north–south gradient of observations over Europe is also captured by the model, although the number of stations is again comparably low.
The simulated spatial patterns in East Asia also arguably match the observations well.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F25" specific-use="star"><?xmltex \currentcnt{25}?><?xmltex \def\figurename{Figure}?><label>Figure 25</label><caption><p id="d1e9688">The same as Fig. <xref ref-type="fig" rid="Ch1.F20"/> but for <inline-formula><mml:math id="M376" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f25.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F26" specific-use="star"><?xmltex \currentcnt{26}?><?xmltex \def\figurename{Figure}?><label>Figure 26</label><caption><p id="d1e9715">The same as Fig. <xref ref-type="fig" rid="Ch1.F21"/> but for <inline-formula><mml:math id="M377" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f26.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS6.SSS4">
  <label>4.6.4</label><title>Dust and sea spray</title>
      <p id="d1e9747">This section provides an overview for species frequently found in
dust and sea spray aerosol: sodium, calcium, magnesium, potassium and chloride.
As the ocean is a large source of these water-soluble species, concentrations over the sea and coastal areas are large,
as opposed to lower concentrations over the continents. Sodium, potassium, magnesium and calcium can also be found in desert dust,
for instance in the Sahara, as reported by <xref ref-type="bibr" rid="bib1.bibx121" id="text.163"/> and <xref ref-type="bibr" rid="bib1.bibx98" id="text.164"/>. However, most of the monitoring locations except for those in coastal areas are sampling quite remote sites far from the source regions, and thus they cannot be expected to display the full range of concentrations. In the following section, we present the results for sodium in more detail, followed by a brief overview of the remaining species.</p>
      <p id="d1e9756">Sodium is represented well by the model,
as averaged monthly mean concentrations from model and observations agree
in general, particularly for EPA (Table <xref ref-type="table" rid="Ch1.T6"/>).
The mean ratio <inline-formula><mml:math id="M378" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>, however, shows an average overestimation by a factor of at least 2.
The observational standard deviation (OSTD) for all regions is smaller than the RMSE, the latter being reduced compared to the results from a previous study by <xref ref-type="bibr" rid="bib1.bibx115" id="text.165"/>.
For EMEP, more than three out of five simulated monthly mean values lie within a factor of 2 of the observations and
more than 53 % and 46 % for EMEP and EANET, respectively, which is a substantial improvement compared to <xref ref-type="bibr" rid="bib1.bibx115" id="text.166"/>.
The latter two networks again offer only a small number of stations.
Considering the average of monthly mean concentrations separated by season,
one can observe an underestimation of summer concentrations for all networks (Fig. <xref ref-type="fig" rid="Ch1.F27"/>).</p>
      <p id="d1e9784">As mentioned before, the regional distribution of stations does not cover those regions with high concentrations.
However, when including the information of all networks at once, one can observe that continental stations exhibit low annual mean concentrations,
while high concentrations can for instance be observed at stations close to the coast
(i.e. Japan, Florida, Denmark, Sweden), indicating that spatial features of the global sodium distribution are qualitatively captured (Fig. <xref ref-type="fig" rid="Ch1.F28"/>).</p>
      <p id="d1e9789">Potassium, magnesium and calcium ions share spatial features with sodium in the model,
exhibiting elevated values over the ocean, as well as over the Sahara and Gobi desert,
and reduced concentrations over other continental areas.</p>
      <p id="d1e9793">The number of stations in EANET is quite low for all sea spray species, which, on the one hand, allows for a few outliers to dominate mean values and errors.
On the other hand, EPA offers a large number of stations, yet the correspondence between model and observations is also quite low
for sea spray and dust species.
Average monthly mean concentrations for magnesium are represented well in the model,
which is caused by a large overestimation of concentrations in winter months balancing an underestimation of summer concentrations (not shown).</p>
      <p id="d1e9796">Chloride concentrations are widely overestimated with respect to all three networks.
The exceptionally high ratio <inline-formula><mml:math id="M379" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> for EMEP is caused by two outliers with <inline-formula><mml:math id="M380" display="inline"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula>
due to very low observed concentrations. Without these factors, <inline-formula><mml:math id="M381" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> is better, with a value of 13.08.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F27" specific-use="star"><?xmltex \currentcnt{27}?><?xmltex \def\figurename{Figure}?><label>Figure 27</label><caption><p id="d1e9847">The same as Fig. <xref ref-type="fig" rid="Ch1.F20"/> but for <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Na</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f27.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F28" specific-use="star"><?xmltex \currentcnt{28}?><?xmltex \def\figurename{Figure}?><label>Figure 28</label><caption><p id="d1e9871">The same as Fig. <xref ref-type="fig" rid="Ch1.F21"/> but for  <inline-formula><mml:math id="M383" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">Na</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f28.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS6.SSS5">
  <label>4.6.5</label><title>Organic aerosols (OA)</title>
      <p id="d1e9901">Figure <xref ref-type="fig" rid="Ch1.F30"/> shows the comparison of model-calculated OA
concentrations with measurements from the EMEP observational network over Europe,
the IMPROVE network over rural North American locations,
and short-term measurement data collected over East Asia
as summarized by <xref ref-type="bibr" rid="bib1.bibx64" id="text.167"/>. As we only used measurements
taken in the year 2010, a low number of observations are present for East Asia,
and the comparison must be taken cautiously for this region.
The comparison statistics are presented in Table <xref ref-type="table" rid="Ch1.T6"/>.
The model captures the monthly average concentrations of OA relatively well
over these highly populated regions of the Northern Hemisphere.
This is rather encouraging given the expected uncertainties of the emission inventory
and the complex chemistry involved in simulating the secondary organic aerosol formation.
It is worth emphasizing that the model considers the formation of SOA solely
from the homogeneous gas-phase photochemical oxidation of its precursors.
Therefore, the omission of other SOA formation pathways
(e.g. from aqueous-phase and heterogeneous reactions) can add to the model bias.
This is mostly evident during winter (e.g. over Europe), when the relative importance
of these processes on SOA formation increases due to the lower photochemical activity
and the limited conversion of gas-phase organic precursors to SOA.
In addition, recent studies have provided strong evidence
that the uptake of water-soluble gas-phase oxidation products
(even small carbonyls like formaldehyde and acetic acid)
can be the main driver of SOA pollution during haze events over East Asia
<xref ref-type="bibr" rid="bib1.bibx40" id="paren.168"/>.
Given the coarse resolution of the model and its inability to simulate
these SOA formation pathways,
the observed total OA concentrations are expected to be systematically
underestimated by the model over East and South Asia.
Nevertheless, model results are in general in reasonable agreement with observations,
with the exception of the strong underestimation over Beijing and Shijiazhuang,
which brings the <inline-formula><mml:math id="M384" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> to very low value (i.e. 0.51).
As pointed out by <xref ref-type="bibr" rid="bib1.bibx92" id="text.169"/> and <xref ref-type="bibr" rid="bib1.bibx164" id="text.170"/>, the emission inventories for semivolatile and
intermediate-volatility organic compounds are insufficient and lead to the majority
of the model biases in simulating OA in these regions
that are influenced significantly by anthropogenic emissions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F29" specific-use="star"><?xmltex \currentcnt{29}?><?xmltex \def\figurename{Figure}?><label>Figure 29</label><caption><p id="d1e9938">The same as Fig. <xref ref-type="fig" rid="Ch1.F20"/> but for <inline-formula><mml:math id="M385" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OA</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f29.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F30" specific-use="star"><?xmltex \currentcnt{30}?><?xmltex \def\figurename{Figure}?><label>Figure 30</label><caption><p id="d1e9959">The same as Fig. <xref ref-type="fig" rid="Ch1.F21"/> but for  <inline-formula><mml:math id="M386" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OA</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f30.png"/>

          </fig>

      <p id="d1e9979">Over Europe, the model also underestimates OA,
with <inline-formula><mml:math id="M387" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> of 0.83 (see Table <xref ref-type="table" rid="Ch1.T6"/>).
The model performs worst during winter. <xref ref-type="bibr" rid="bib1.bibx146" id="text.171"/>
have identified the lack of biomass burning emissions as the main source of this discrepancy
over Europe.
<xref ref-type="bibr" rid="bib1.bibx76" id="text.172"/> and <xref ref-type="bibr" rid="bib1.bibx105" id="text.173"/> have more recently shown evidence
that biomass burning also contributes significantly to SOA formation
during winter following its oxidation by the <inline-formula><mml:math id="M388" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical in the dark.
Over North America, the model overestimates
OA over rural areas, with a <inline-formula><mml:math id="M389" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>O</mml:mi></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> equal to 1.73.
However, as shown in  Fig. <xref ref-type="fig" rid="Ch1.F29"/>,
part of this discrepancy
is explained by the low values of OA over the US national parks.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F31" specific-use="star"><?xmltex \currentcnt{31}?><?xmltex \def\figurename{Figure}?><label>Figure 31</label><caption><p id="d1e10039">The same as Fig. <xref ref-type="fig" rid="Ch1.F22"/> but for organic aerosol.</p></caption>
            <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/15/2673/2022/gmd-15-2673-2022-f31.png"/>

          </fig>

      <p id="d1e10050">Despite the agreement of the surface OA concentrations between model results
and observations, the OA are strongly underestimated in the free troposphere.
In Fig. <xref ref-type="fig" rid="Ch1.F31"/>, the model is compared with 12 field campaign measurements
<xref ref-type="bibr" rid="bib1.bibx50" id="paren.174"/>.
Our results show similar agreement to those obtained
by <xref ref-type="bibr" rid="bib1.bibx50" id="text.175"/>, with the simulated values being below the observed values.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S5">
  <label>5</label><title>Conclusions</title>
      <p id="d1e10072">We have presented an  evaluation of EMAC with a comprehensive degradation scheme for organics (MOM) in the MECCA chemistry submodel
combined with an explicit estimation
of the organic tracers' condensation on aerosols with a VBS
approach (ORACLE submodel).
We have compared the model results with a large number of in situ and satellite-based
remote sensing observations.
The evaluation focuses on carbon monoxide (<inline-formula><mml:math id="M390" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>), simple organics and aerosols,
which are the samples most influenced by the new scheme.
<inline-formula><mml:math id="M391" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> is correctly reproduced compared with station measurements,
with the correct north–south gradient.
Nevertheless, once the model results are compared with the satellite
observations from MOPITT, an overestimation of <inline-formula><mml:math id="M392" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> over the Amazon
basin is apparent, especially in  autumn,
possibly due to an overestimation of the biomass burning emissions
simulated by the model.
For alkanes the comparison shows a good agreement, although
an oceanic source for the butanes is missing.
In contrast, the model underestimates alkenes,
especially <inline-formula><mml:math id="M393" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which shows large
differences compared to the observations.
Model results of oxygenated species show an indifferent picture
when compared to observations depending on the tracer:
while methanol is well reproduced, simulated acetone shows
large spatial discrepancies compared to the remotely sensed observations.
For the latter, the model in fact misses strong emissions over the boreal forests,
while it instead predicts too high total columns over tropical forests
(i.e. Amazonia and central Africa).
Formic and acetic acid show similar agreement to the observations,
with the main tropical sources being well reproduced, albeit with a strong
underestimation elsewhere.</p>
      <p id="d1e10115">The aerosols at the surface are reproduced well by the model
with respect to both composition and total amount.
The annually averaged simulated AODs show a
very good agreement with the AERONET station observations,
but they show some deficiencies in the representation of the short-term variability.
The agreement of the fine particulate mass (<inline-formula><mml:math id="M394" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) near the surface is also quite good, with most of the simulated values within
a factor of 2 of the observations.
The evaluation of the aerosol chemical composition shows a high level of agreement
for near-surface sulfate and more deviation for <inline-formula><mml:math id="M395" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and nitrate,
which are both overestimated by the model (especially the latter), even though the observations are characterized with a high level of uncertainty.
The mechanically produced primary aerosol species (dust and sea salt)
show a reasonable agreement with the observations with some substantial overestimation
of the simulated chloride concentrations indicating an acid displacement process that is too weak over the continents.</p>
      <p id="d1e10142">Finally, the comparison of OA shows a good agreement
with station observations, while the vertical
distribution of the simulated values are
largely underestimated when compared with aircraft
measurements, which is analogous to other global atmospheric chemistry models
of similar complexity, although significant improvement
in this direction has recently been published <xref ref-type="bibr" rid="bib1.bibx106" id="paren.176"/>.</p>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <label>6</label><title>Outlook</title>
      <p id="d1e10156">The presented model evaluation is useful for identifying areas for further model improvements.
A few possible directions are discussed below.</p>
      <p id="d1e10159">Emissions have always been a critical point for simulating tropospheric chemistry.
It has already been shown in many studies that even anthropogenic emissions
of alkanes need to be improved as they are severely underestimated in many inventories
(e.g. <xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx142" id="altparen.177"/>), mostly due to erroneous speciation of the total VOC emissions
<xref ref-type="bibr" rid="bib1.bibx18" id="paren.178"/></p>
      <p id="d1e10167">Residential wood burning and/or biofuel use (e.g. for heating)
that often contribute significantly to both POA and SOA formation
over urban areas are strongly underestimated in the emission inventories
<xref ref-type="bibr" rid="bib1.bibx146 bib1.bibx21" id="paren.179"/>.
In addition, global models lack OA emissions from residential
and commercial cooking activities that can be an important source of OA
<xref ref-type="bibr" rid="bib1.bibx97 bib1.bibx137 bib1.bibx38 bib1.bibx47" id="paren.180"/>.
Underestimation of cold-start vehicle emissions <xref ref-type="bibr" rid="bib1.bibx157" id="paren.181"/>
can also lead to significant underestimation of OA formation from the transport sector
(e.g. during wintertime).</p>
      <p id="d1e10179">As seen in this study, the model results underestimate selected VOCs in boreal regions.
The thawing of permafrost is potentially an additional emission source of organic compounds at high latitudes in the Northern Hemisphere <xref ref-type="bibr" rid="bib1.bibx83" id="paren.182"/> that has not been considered yet. However, an estimate with global datasets is still missing.
Furthermore, the emission of VOCs from biomass burning is likely strongly underestimated.
In fact, overwintering fires in boreal forest <xref ref-type="bibr" rid="bib1.bibx132" id="paren.183"/>, which smoulder through the non-fire season,
are normally not detected by satellite observations and are therefore missing in our used emissions dataset.
Moreover, peat fires are not easily detected from space but are characterized by larger emission factors for many VOCs.
They are important for simulating air composition during peat fires in Indonesia <xref ref-type="bibr" rid="bib1.bibx124" id="paren.184"/>
and likely critical for resolving the model biases at high latitudes, where most of peatland is located
and could be further released by permafrost thawing.
<xref ref-type="bibr" rid="bib1.bibx120" id="text.185"/> also found that small undetected fires enhance
the estimated amount of emitted carbon from biomass burning in sub-Saharan Africa by 31 %–101 %.
Finally, soil temperature and soil wetness play an important role in the estimation of the online emissions of biogenic VOCs,
and it is therefore important to have a correct simulation of the surface properties by the underlying climate model.</p>
      <p id="d1e10195">Furthermore, dry deposition is a relevant process also affecting VOCs in the lower troposphere <xref ref-type="bibr" rid="bib1.bibx73" id="paren.186"/>.
The inclusion of the additional uptake at the plant cuticle leads to a better representation <xref ref-type="bibr" rid="bib1.bibx69 bib1.bibx100 bib1.bibx26" id="paren.187"/>
and would likely reduce the overestimation of species like acetaldehyde in the tropics, as shown here.
In the Amazon rainforest, the missing storage capacity of soil water leading to too high temperatures <xref ref-type="bibr" rid="bib1.bibx45" id="paren.188"/>
additionally causes an underestimation of dry deposition <xref ref-type="bibr" rid="bib1.bibx26" id="paren.189"/>,
while temperature-dependent processes like VOC emissions are overestimated.</p>
      <p id="d1e10210">Another source of uncertainty is related to the scavenging efficiency of gas-phase OA precursors.
The water solubility of these oxidized organic vapours is largely unknown
and is typically considered uniform for all organic compounds in modelling studies
even though they become increasingly more hydrophilic during their atmospheric lifetime
<xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx147" id="paren.190"/>​​​​​​​.</p>
      <p id="d1e10216">The extension of MOM for the oxidation of additional VOCs has the potential
to reduce the negative model biases for some oxygenated volatile organic compounds (OVOCs) and enhance the predicted OA levels.
For instance, with an emission strength of more than 40 <inline-formula><mml:math id="M396" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Tg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, anthropogenic <inline-formula><mml:math id="M397" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
and higher hydrocarbons can be a significant source of OVOCs like acetaldehyde and acetone <xref ref-type="bibr" rid="bib1.bibx114" id="paren.191"/>.
Further improvements are expected from an extended representation of the emission and oxidation
of known biogenic VOCs with more than five carbon atoms.
Moreover, the emissions of aromatic compounds from biogenic sources could be as large as 40 <inline-formula><mml:math id="M398" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Tg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx96" id="paren.192"/>.
So far only small emissions of toluene are considered, and a more comprehensive representation of biogenic aromatics
would likely lead to further improvements.</p>
      <p id="d1e10270">The formation of SOA in most models relies on the reaction of its gas-phase precursors
with reactive atmospheric radicals (e.g. <inline-formula><mml:math id="M399" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M400" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M401" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>),
and their chemical ageing is usually considered by the further photo-oxidation
of the semivolatile products solely in the gas phase.
However, SOA is also subject to oxidation in the aqueous phase through
superficial and bulk interactions with gas-phase oxidants <xref ref-type="bibr" rid="bib1.bibx39" id="paren.193"/>.
Therefore, fundamental processes of SOA formation in the aqueous phase
(e.g. from isoprene epoxydiols <xref ref-type="bibr" rid="bib1.bibx102" id="paren.194"/> and glyoxal <xref ref-type="bibr" rid="bib1.bibx37" id="paren.195"/>)
are typically missing from the conventionally used parameterizations.
In addition, the uptake of small carbonyls (e.g. aldehydes and acids)
to the aqueous phase and their subsequent oxidation and oligomerization
has been recently linked to significant increases of SOA mass during pollution events <xref ref-type="bibr" rid="bib1.bibx40" id="paren.196"/>.</p>
      <p id="d1e10316">Recently, MOM has been coupled to the detailed Jülich Aqueous-phase Mechanism of Organic Chemistry
(JAMOC, <xref ref-type="bibr" rid="bib1.bibx126" id="altparen.197"/>) for cloud droplets.
An explicit treatment of multiphase chemistry of OVOC has already been used for assessing the global role of clouds
as a sink of ozone <xref ref-type="bibr" rid="bib1.bibx125" id="paren.198"/>.
By comparing EMAC's prediction of total methanol columns to IASI satellite retrievals (comparable to Sect. <xref ref-type="sec" rid="Ch1.S4.SS2.SSS3"/>
and Fig. <xref ref-type="fig" rid="Ch1.F8"/>), they find that EMAC's tendency to overestimate methanol is partially reduced by the additional cloud sink.
This suggests that the missing representation of in-cloud OVOC chemistry introduces a significant bias in the present study,
and therefore a more detailed multiphase chemistry should be included for future studies.
Furthermore, JAMOC is limited to the oxidation of OVOCs containing up to four carbon atoms <xref ref-type="bibr" rid="bib1.bibx126" id="paren.199"/>,
and an expansion to larger species (i.e. containing more than four carbon atoms) is thus desirable,
in order to improve the representation of these OVOCs in EMAC when using MOM.
Based on the results of <xref ref-type="bibr" rid="bib1.bibx36" id="text.200"/>, more detailed in-cloud chemistry
could improve the representation of acids (such as acetic and formic acid), which is clearly underestimated here, where cloud chemistry is important.</p>
      <p id="d1e10336">Finally, the MOM <inline-formula><mml:math id="M402" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> ORACLE framework calculates the
phase partitioning of organic compounds by assuming a bulk equilibrium
without any kinetic limitation.
However, the phase state of the organic aerosol can affect the mixing time
of the condensed organic compounds within the aerosol.
In general, equilibrium partitioning to the particle phase is a reasonable assumption
if the aerosol is liquid; however, if the phase state is solid, non-equilibrium partitioning should
be considered.
<xref ref-type="bibr" rid="bib1.bibx133" id="text.201"/> suggests that kinetic limitations in the bulk may not significantly
affect SOA partitioning in the boundary layer, justifying the use of equilibrium partitioning in this
part of the atmosphere, but kinetic limitations should be implemented and investigated for the free and upper troposphere.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e10353">The Modular Earth Submodel System (MESSy) is continuously further developed and applied by a consortium of institutions.
The usage of MESSy and access to the source code is licensed to all affiliates of institutions which are members of the MESSy Consortium.
Institutions can become a member of the MESSy Consortium by signing the MESSy Memorandum of Understanding.
More information can be found on the MESSy Consortium Website (<uri>http://www.messy-interface.org</uri>, last access: 2 March 2022).
The code presented here has been based on MESSy version 2.54 and is available in the official release of version 2.55.​​​​​​​</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e10359">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/gmd-15-2673-2022-supplement" xlink:title="pdf">https://doi.org/10.5194/gmd-15-2673-2022-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e10368">AP, AT and VlK​​​​​​​ planned the research.
AP designed, coded, prepared the input files and performed the model simulation with the help of SE.
AP, ViK, SG, SFR, BF, SR, TE, DT, VF, AT and MK wrote the manuscript.
DT and RS developed MOM and integrated it into MECCA.
SG implemented extended budgeting of species turnover.
AT and VlK modified ORACLE to accommodate the organic tracers from the MOM chemical mechanism.
MC, DG and JWK provided the emissions for the simulations.
AP, SFR, ViK, AT, DA and MK contributed to the evaluation.
AKS corrected the manuscript.
PJ and HT contributed to model development of the system applied here.
BF and LC developed the IASI VOC products and performed the comparisons with EMAC.​​​​​​​</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e10374">At least one of the co-authors is a member of the editorial board of <italic>Geoscientific Model Development</italic>. The peer-review process was guided by an independent editor, and the authors also have no other competing interests to declare.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e10383">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e10389">IASI is a joint mission of EUMETSAT and the Centre National d'Etudes Spatiales (CNES, France).
The IASI Level-1C data are distributed in near real time by EUMETSAT through the EUMETCast distribution system.
The authors acknowledge the AERIS data infrastructure (<uri>https://www.aeris-data.fr/</uri>, last access: 21 September 2021)
for providing access to the IASI Level-1C data and Level-2 temperature data. IASI activities are supported
by the Belgian State Federal Office for Scientific, Technical and Cultural Affairs (Prodex arrangement IASI.FLOW).
Lieven Clarisse is a research associate supported by the F.R.S. – FNRS.
Holger Tost acknowledges funding from the Carl Zeiss Foundation.
We are grateful to Colette Heald for providing the aircraft data and for her support and suggestions
to improve the manuscript.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e10397">The article processing charges for this open-access publication were covered by the Max Planck Society.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e10404">This paper was edited by Christoph Knote and reviewed by three anonymous referees.</p>
  </notes><ref-list>
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