Calibrating soybean parameters in JULES 5.0 from the US-Ne2/3 FLUXNET sites and the SoyFACE-O3 experiment

Abstract. Tropospheric ozone (O3) is the third most important
anthropogenic greenhouse gas. O3 is detrimental to plant productivity,
and it has a significant impact on crop yield. Currently, the Joint UK Land
Environment Simulator (JULES) land surface model includes a representation
of global crops (JULES-crop) but does not have crop-specific O3 damage
parameters and applies default C3 grass O3 parameters for soybean that
underestimate O3 damage. Physiological parameters for O3 damage
in soybean in JULES-crop were calibrated against leaf gas-exchange
measurements from the Soybean Free Air Concentration Enrichment (SoyFACE)
with O3 experiment in Illinois, USA. Other plant parameters were
calibrated using an extensive array of soybean observations such as crop
height and leaf carbon and meteorological data from FLUXNET sites near
Mead, Nebraska, USA. The yield, aboveground carbon, and leaf area index (LAI)
of soybean from the SoyFACE experiment were used to evaluate the newly
calibrated parameters. The result shows good performance for yield, with the
modelled yield being within the spread of the SoyFACE observations. Although
JULES-crop is able to reproduce observed LAI seasonality, its magnitude is
underestimated. The newly calibrated version of JULES will be applied
regionally and globally in future JULES simulations. This study helps to
build a state-of-the-art impact assessment model and contribute to a more
complete understanding of the impacts of climate change on food production.


Abstract. Tropospheric ozone (O 3 ) is the third most important anthropogenic greenhouse gas. O 3 is detrimental to plant productivity, and it has a significant impact on crop yield. Currently, the Joint UK Land Environment Simulator (JULES) land surface model includes a representation of global crops (JULES-crop) but does not have crop-specific O 3 damage parameters and applies default C3 grass O 3 parameters for soybean that underestimate O 3 damage. Physiological parameters for O 3 damage in soybean in JULEScrop were calibrated against leaf gas-exchange measurements from the Soybean Free Air Concentration Enrichment (SoyFACE) with O 3 experiment in Illinois, USA. Other plant parameters were calibrated using an extensive array of soybean observations such as crop height and leaf carbon and meteorological data from FLUXNET sites near Mead, Nebraska, USA. The yield, aboveground carbon, and leaf area index (LAI) of soybean from the SoyFACE experiment were used to evaluate the newly calibrated parameters. The result shows good performance for yield, with the modelled yield being within the spread of the SoyFACE observations. Although JULES-crop is able to reproduce observed LAI seasonality, its magnitude is underestimated. The newly calibrated version of JULES will be applied regionally and globally in future JULES simulations. This study helps to build a state-of-the-art impact assessment model and contribute to a more complete understanding of the impacts of climate change on food production.

Introduction
Surface ozone (O 3 ) pollution is one of the major threats to global food security due to the detrimental effects of ozone exposure on crops Avnery et al., 2011b;Leung et al., 2020;Long et al., 2005;Tai et al., 2014;Tai and Val Martin, 2017). In the United States alone, crop loss due to tropospheric O 3 costs more than USD 5 billion annually Avnery et al., 2011a;Van Dingenen et al., 2009).
Soybean is one of the main staple crops for human consumption; it also serves as an important source of animal feed. It is a cheap source of proteins, and therefore soybean products are consumed around the world. The impact of O 3 on soybean physiology and growth has been studied extensively Betzelberger et al., 2012;Dermody et al., 2008;Morgan et al., 2003). Crop yield losses to tropospheric O 3 have been quantified using model projection and experiments. The National Crop Loss Assessment Network and European Open Top Chamber programmes have established the air quality guideline, which derived dose-response relationships from comparable experimental data. These campaigns provided critical information such as the O 3 response relationship and estimated yield loss due to O 3 damage that enabled regional projections of O 3 effects on crop yields (Fuhrer, 2009). However, open top chambers modify plant response to O 3 due to the "chamber effects" which create microclimates (Elagöz and Manning, 2005) and environmental differences between the chamber and open air micrometeorology in which yield loss is underestimated (Van Dingenen et al., 2009). Recently the introduction of freeair concentration enrichment (FACE) technology avoids the artefacts from enclosed chambers, and O 3 fumigation was adapted to FACE facilities (Agathokleous et al., 2017;Paoletti et al., 2017). The application of FACE experiment on crops took place in China (Zhu et al., 2011) and the USA, including experiments with soybean at the SoyFACE facility in Champaign, Illinois (Morgan et al., 2004;Betzelberger et al., 2010Betzelberger et al., , 2012. Crops are a significant component of the land surface; e.g. croplands and pasturelands represent 12 % and 26 % of the global terrestrial land, respectively (Van den Hoof et al., 2011). Moreover, the phenology of crops is very different from that of natural vegetation and is characterised by high growth, turnover rate, and strong seasonality. It is thus necessary to include a crop-specific parameterisation scheme to improve simulations of land surface fluxes and regional climate in agroecosystems ( Van den Hoof et al., 2011). The Joint UK Land Environment Simulator with crops (JULEScrop) is a crop parameterisation (Osborne et al., 2015) within the land surface model JULES . Global simulations have been performed with JULES-crop for rice, wheat, maize, and soybean (Osborne et al., 2015). These four crop types contribute more than 70 % of human calorie intake (Ray et al., 2013). JULEScrop includes routines representing growth, development, and harvesting of crops driven by the overlying meteorological inputs. In JULES-crop, four new prognostic variables have been added: crop development index (DVI), root carbon (C root ), harvest carbon (C harv ), and reserve carbon (C resv ). DVI controls the duration of the crop growing season in four distinct stages -sowing, emergence, flowering, and maturity -and it determines when changes in carbon partitioning occur (Osborne and Hooker, 2011). C root , C harv , and C resv are the carbon pools for roots, harvested organs (e.g. grains of cereal, fruits, and root), and stem reserves, respectively. Carbon pools for stem and leaves are determined from the existing prognostic variables, leaf area index (LAI) and canopy height. In Osborne et al. (2015), global runs of maize, wheat, soybean, and rice were carried out using JULES-crop. Site runs were performed at four FLUXNET sites with soybeanmaize rotation: Bondville (US-Bo1), Fermi (US-IB1), and Mead (US-Ne2 and US-Ne3). Simulated yield was compared against country and global FAO crop yields. Osborne et al. (2015) used generic representations for each of the crops in their global study. For the plant parameters that are needed outside the crop model such as leaf nitrogen and leaf respiration parameters, these are set to those of the C3 or C4 grass functional types. Osborne et al. (2015) suggested that these parameters could be tuned to be more crop specific to improve fit to observations. These JULES parameters have been calibrated against observations for maize, using data from the Mead FLUXNET sites in Nebraska (Williams et al., 2017). However, to date, these parameters have not been calibrated to soybean data.
There are many crop models developed by institutions/organisations around the world. Most are designed for application to an individual field up to the regional scale and do not include O 3 impacts on vegetation. Supplement Table S1 compares a selection of land surface models which include crop tiles and have the functions to model climate impact on crop productivity. JULES-crop is of particular interest because it is a development of the global land surface component JULES of the Met Office numerical weather prediction and climate models and contains a detailed representation of plant physiological processes at sub-diurnal timescales, including consideration of O 3 effects on natural vegetation, thus making it suitable for this study. JULEScrop has been accepted into the JULES trunk with the intention to be coupled with the Hadley Centre Global Environment Model (HadGEM) in the near future. HadGEM is recognised as one of the best performing climate models with smaller errors than typical climate models (Gleckler et al., 2008;Knutti et al., 2013).
The calibration of O 3 damage on soybean would allow land surface and crop models to more realistically and reliably simulate present-day and future O 3 damage and subsequently to quantify its economic impacts. The objective of this study is to calibrate soybean representation for JULEScrop, with a particular focus on the response of soybean to O 3 exposure. This paper is organised as follows: Sect. 2 describes the model set-up and observations used for the JULES calibration. Section 3 compares the results from the calibrated JULES runs against independent observations. Section 4 assesses the suitability of the model for modelling soybean under O 3 damage and discusses ways of future model improvement.

Methods
A flowchart demonstrating the calibration and evaluation procedure is given in Fig. 1. We first tuned the JULES-crop soybean parameterisation at the US-Ne2 and US-Ne3 Mead sites, where three years of soybean physiological and meteorological observations were available, at ambient ozone ( Fig. 1, steps 1-5). The three years are 2004, 2006, and 2008 in which soybeans were grown in Mead; maize was grown in other years. Secondly, to calibrate the JULES ozone damage parameters ( Fig. 1, step 6) we made the assumption that there is a negligible damage to crop yield at ambient background levels of O 3 at both the SoyFACE and Mead sites. This is consistent with Mills et al. (2007), who reviewed over 700 published papers and conference proceedings and found that O 3 level of AOT40 over 3 months of 5 ppm h reduced soybean yield by less than 5 %. Then we calibrated specifically the soybean O 3 response using leaf gas exchange measurements from soybean grown under elevated O 3 concentrations at SoyFACE.
Finally, we applied JULES-crop newly calibrated for soybean and its O 3 sensitivity at the leaf level and evaluated model performance against observed yield and leaf area index from SoyFACE, taken for the full range of rings and cultivars ( Fig. 1, step 7).

Calibration of soybean in the absence of ozone damage, using observations from Mead
We followed the standard tuning procedure performed on maize by Williams et al. (2017) but applied to soybean ( Fig. 1, steps 1-5).
Step 1 involves using Mead observation to tune the parameters needed by all plant functional types (PFTs) in JULES with the crop model switched off.
Step 2 is to evaluate the model performance of gross primary productivity (GPP) using Mead meteorology and LAI.
Step 3 tunes the parameters needed by crop only.
Step 4 evaluates the JULES-crop run performance with observed carbon pools in leaf, stem, harvest, etc.
Step 5 demonstrates the full JULES-crop runs at Mead using Mead meteorology and compared the model with observed GPP, aboveground carbon, etc.
Step 6 tunes ozone damage using SoyFACE LI-6204 F. Leung et al.: Calibrating soybean parameters in JULES 5.0 COR measurements. And finally step 7 evaluates JULEScrop performance using SoyFACE meteorology and compares with observed yield and LAI. This method is described in detail in the Supplement, and the resulting parameters are given in Tables 1-3. These are compared to the parameters used in Osborne et al. (2015), which we refer to as the "Osborne 2015 tuning". Note that the parameters in Table 3 in the Osborne 2015 tuning are typical defaults for C3 grass, rather than soybean-specific.

Ozone effects on vegetation (exposure response)
Many studies have shown that the impacts of O 3 are closely related to accumulated exposure above a threshold concentration rather than the mean growing season concentration (Gerosa et al., 2012;Mills et al., 2007). An index of accumulated exposure above a threshold concentration of x ppb (AOTx) has thus been developed as a measure of assessing O 3 pollution effects on vegetation. AOTx is calculated as the summed product of the concentration above the threshold concentration and time (T ), with values expressed in ppb h or ppm h .
The O 3 exposure index AOT40 (accumulated O 3 exposure over a threshold of 40 parts per billion; Eq. 1) has been widely used by crop impact models in the forestry and agriculture industry and was used at SoyFACE.
The metric ensures only O 3 concentrations above 40 ppb are included. The integral is taken over daytime hours between 07:00 to 19:00 LT (UTC-6). AOT40 does not account for the actual uptake of O 3 by plants and how this varies with ontogenetic (life span of the plant) and climatic factors such as temperature, irradiance, vapour pressure deficit, and/or soil moisture (Ashmore, 2005;Fuhrer et al., 1997).
There is a drawback of the cumulative O 3 exposure indices (Pleijel et al., 2000), which assume an instantaneously fixed threshold flux below which there is no effect of O 3 , which may not be realistic. Also in nature, the threshold value is unlikely to be constant (Ashmore, 2005) since the capacity of detoxification of O 3 varies with climate and plant species. To improve these indices, the Stockholm Environment Institute developed the Deposition of Ozone for Stomatal Exchange model (DO 3 SE) ICP Vegetation, 2017). DO 3 SE was developed to estimate the risk of O 3 damage to European vegetation and is capable of providing O 3 flux estimation by evaluating the soil water deficits and their influence on stomatal conductance which affect plant O 3 uptake. Phyto-toxic O 3 dose (POD) above a stomatal threshold over a growing season (the accumulated stomatal flux above threshold Y ) PODY can differentiate species sensitivity to rising background concentration, while AOT40 can only in-corporate the effect of rising global background O 3 above the threshold 40ppb. This difference means the AOT40 metric is less sensitive to O 3 peaks, and stomatal flux-based metrics (e.g. PODY and DO3SE) perform better on O 3 damage estimation in general (Büker et al., 2012;Dentener et al., 2010;Pleijel et al., 2007).

Description of ozone response scheme in JULES
The current O 3 scheme in JULES uses a dose-response approach to model O 3 damage Clark et al., 2011). It uses the O 3 concentration in the atmosphere to modify net photosynthesis A p by an O 3 uptake factor F : where F represents the fractional reduction of plant production: It assumes that O 3 suppresses the potential net leaf photosynthesis in proportion to the O 3 flux through stomata above a specified critical threshold . UO >F O 3 crit is the instantaneous leaf uptake of O 3 over a plant functional type specific threshold (F O 3 crit ) (nmol m −2 s −1 ), and the plant type specific parameter a is the fractional reduction of photosynthesis with O 3 uptake by leaves Sitch et al., 2007).
From Eqs. (3) and (4), F depends on the O 3 uptake rate by stomata (F O 3 ) over a critical (plant functional type specific) threshold for damage. It uses an analogy of Ohm's law, the O 3 flux through stomata, F O 3 (nmol O 3 m −2 s −1 ), which is given by where [O 3 ] is the molar concentration of O 3 at reference level (nmol m −3 ) and R a is the combined aerodynamic and boundary layer resistance between leaf surface and reference level (s m −1 ). g l is the leaf conductance for H 2 O (m s −1 ), and κ O 3 = 1.67 is the ratio of leaf resistance for O 3 to leaf resistance for water vapour . The uptake flux is dependent on the stomatal conductance, which is reliant on the photosynthetic rate in JULES. Given that g l and photosynthetic rate are linearly related, g l is given by where g p is the leaf conductance in the absence of O 3 effects. The set of Eqs. (3, 5, 6) produces a quadratic relationship as  (1992). This approach takes into account leaf angle distribution and zenith angle and differentiates absorption of direct and diffuse radiation. It has a decline of leaf N with canopy height. Additionally includes inhibition of leaf respiration in the light, including sunfleck penetration though the canopy. Division of sunlit and shaded leaves within each canopy level. A modified version of inhibition of leaf respiration in the light. Exponential decline of leaf N with canopy height proportional to LAI, following Beer's law.

L_irrid_dmd
Switch controlling the implementation of irrigation demand code.

Irr_crop
Irrigation season (i.e. season in which crops might be growing on the grid box) lasts the entire year.
l_trait_phys Switch for using trait-based physiology. V c max is calculated based on parameters n l0 (kgN kgC −1 -1) and n eff .
l_scale_resp_pm Soil moisture stress reduces leaf, root, and stem maintenance respiration.
l_leaf_n_resp_fix Switch for bug fix for leaf nitrogen content used in the calculation of plant maintenance respiration.
l_prescsow Sowing dates prescribed a function of F that can be solved analytically . Fractional reduction of photosynthesis with the instantaneous uptake of O 3 by leaves (mmol m −2 ) determines the sensitivity of soybean to O 3 , and the PFT-specific O 3 critical level (F O 3 crit ) determines the threshold O 3 flux above which would cause damage to photosynthesis (Oliver et al., 2018;Sitch et al., 2007). The higher the sensitivity of plants to O 3 the lower photosynthesis the plant has at a given constant critical threshold. Sitch et al. (2007) configured plant functional types with two different O 3 sensitivities (fractional reduction of photosynthesis by O 3 , F , Eqs. 2, 3), where a = 1.40 is high sensitivity, and a = 0.25 is lower sensitivity for C3 grass (Sitch, 2007), using monthly average O 3 data and calibration to yield observations.

Calibrating the ozone effects on crop leaf photosynthesis in JULES using SoyFACE
The SoyFACE experiment in Illinois allows controlled CO 2 or O 3 enrichment across large plots within a soybean field without an enclosure. SoyFACE O 3 fumigation typically began after the emergence of soybean, and the plots were fumigated with O 3 for 8-9 h daily except when leaves were wet. In 2009 and 2010, soybeans were exposed to nine different concentrations of O 3 ranging from the ambient level to a tar-    Fig. S2). The fumigation ended when soybean was mature. Plant damage from O 3 is cumulative, and the target concentration for the experiment was not always met (e.g. when wind speeds are low, during rain, or when O 3 generators or analysers are down). Therefore, the 8 h mean and the AOT40 index (accumulated ozone exposure above the threshold of  rameters calibrated at the Mead site to drive the Leaf Simulator computer package, which reproduces the calculation of leaf photosynthesis within JULES. We then tuned the O 3 parameterisation of fractional reduction of photosynthesis by O 3 (sensitivity) and threshold of O 3 flux (nmol m −2 s −1 ) to match the modelled leaf photosynthesis rate to the observed rate (Fig. 2). The tuned parameters are shown in Table 4.

Model configuration for the JULES-crop SoyFACE runs
The meteorological forcing data measured at Champaign, Illinois, in 2009 were used to drive the JULES-crop model. The downward longwave radiation and diffuse radiation data from NOAA at Bondville site (SURFRAD) were used as SoyFACE does not have these variables available. The driving data were repeatedly applied (recycled 25 times) to spin up the model from an arbitrary starting point with soil temperature initially set to 278 K and soil moisture to 75 % of saturation. A single crop type was modelled -soybean -using a single plant tile. Observed CO 2 (NOAA) and 8 h mean observed O 3 concentrations from the SoyFACE rings (averaged over a month) were used as the driving data of the model since natural O 3 is produced around 8 h in daytime, and it is a typical temporal resolution for O 3 fumigation. The soil ancillary parameters used in SoyFACE were extracted from the global dataset of soil ancillary from the HadGEM2-ES model (a coupled Earth system model that was used by the Met Office Hadley Centre for the CMIP5). Observed ambient O 3 was used as the control. The new parameters for soybean were used, which we calibrated to observations from the Mead FLUXNET sites as described in the Supplement.
The exception is the initial carbon: since the row spacing at the SoyFACE facility is half that used at the Mead sites, we doubled the initial carbon for SoyFACE compared to Mead. The resulting model yield, above ground carbon, and LAI were compared to the SoyFACE observations.

Results and discussion
Results from JULES runs with crop model and ozone damage turned on are shown in Figs. 3 and 4. Figure 3 shows the evaluation of the soybean aboveground biomass carbon for different O 3 exposure levels (AOT40) using the O 3 damage parameters in Table 4. The model aboveground carbon (solid lines) is compared to the line fitted in Betzelberger et al. (2012) to their aboveground carbon observations. The run with the newly-calibrated parameters overestimated the carbon at ambient ozone levels. One contributing factor could be that water stress is underestimated in the new configuration, since it was not possible to evaluate the response to soil water availability using the Mead site data, so we instead derived a value for fsmc_p0 (parameterised in the calculation of the threshold for water stress; see Table 3) from the literature. We tested the sensitivity to this choice by re-running this configuration with fsmc_p0=0, which represents water-stressed conditions, and this caused a 12 % reduction in aboveground carbon (plots shown in Supplement). In addition, the representation of the soil properties in the JULES SoyFACE run could be improved by calibration to site measurements. In contrast, the Osborne 2015 tuning intersects the line fitted to observed aboveground carbon at zero ozone concentration (partially because of higher water stress) but then shows a sharp decrease from zero to ambient levels, which is not realistic. Note that no observations were taken for below-ambient ozone concentrations at SoyFACE, so this section of the fitted line is an extrapolation. The slope of the aboveground carbon response to increasing ozone concentrations is similar for all three runs and compares very well to the Betzelberger et al. (2012) fitted line. The yield-O 3 response curve in Fig. 4 shows that new parameterisation slightly overestimates yield in the ambient SoyFACE ring, compared to the spread of SoyFACE yield observations from Betzelberger et al. (2012). The Osborne 2015 tuning with high ozone sensitivity is within the spread of measured yield in ambient conditions, but note that the modelled yield has decreased sharply from zero ozone concentration to ambient levels, which is undesirable. The magnitude of the gradient of yield against AOT40 for all three model configurations is within the spread of the observations. However, the slope is underestimated for the new, calibrated run and overestimated for the Osborne 2015 tuning, especially for the range from ambient to 40 ppm h. Recall that ozone concentration modifies net leaf CO 2 assimilation rate in JULES and that the model parameters governing this process (Fo3crit, a) are calibrated directly to net leaf CO 2 Table 4. Summary of ozone parameter configurations employed in JULES-crop for the default Osborne et al. (2015) value and the tuned as calibrated to SoyFACE leaf gas-exchange measurements (note that these have been calibrated to daytime 8 h concentrations and therefore will be different to parameters calibrated to monthly 24 h means). assimilation rate observations from SoyFACE in our new configuration (Sect. 2). Reductions in the modelled net leaf CO 2 assimilation rate lead to the reductions in model aboveground biomass, yield, and LAI, which we show in this section. However, Betzelberger et al. (2012) also reported additional impacts of ozone damage, such as changes in leaf absorptance and specific leaf mass, that are not represented in JULES, and therefore our tuning does not account for them. In contrast, the values of Fo3crit and a in the high and low sensitivity versions of the Osborne 2015 tuning simulations (Table 4) were calibrated in Sitch et al. (2007) to yield observations. Therefore, they can be seen as "effective" parameters in these configurations, since they incorporate the effect of the ozone damage processes that are not explicitly represented in JULES. Note that we plot AOT40 on the x axis for illustrative purposes only, to be comparable with results presented in Bet- run. An alternative would be to plot ring number or ring target concentration. Ideally, we would plot the x axis with the metric phytotoxic ozone dose (POD) for JULES and observed data, which account for the dosage of O 3 that get into the stomata of soybean, but this is beyond the scope of the present study. Figure 5 compares the model and observed LAI at Soy-FACE for different O 3 concentrations. JULES was able to reproduce LAI seasonality; however, it underestimated the amplitude. The maximum LAI for calibrated JULES peaked around day 240 in September, and observations peaked at DoY 220-230. The peak LAI in the model runs was less than half the observed LAI in all cases. While the Mead model runs also showed a slight underestimation of peak LAI compared to observation (Supplement), the majority of the underestimation of the modelled SoyFACE LAI is due to a differ- ence between the observed relationships between peak LAI and yield at the Mead and SoyFACE sites. At both sites, observed maximum yield increases with observed peak LAI. However, for similar observed yields, the observed SoyFACE yield tends to be higher than the observed Mead LAI. Given that our calibration is based on Mead observations, it is therefore not surprising that our model runs at SoyFACE underestimate peak LAI compared to the SoyFACE observations. A contributing factor to the different relationship between observed peak LAI and observed yield at SoyFACE compared to Mead could be the different methods used to measure LAI at the Mead sites (which this parameter set was tuned against) and at SoyFACE. At Mead, destructive measurements were taken, whereas at SoyFACE, LAI was measured indirectly, using radiation attenuation through the canopy.

JULES ozone damage parameters
Another plausible contributing factor for the different relationship between observed peak LAI and observed yield at SoyFACE compared to Mead is the row density of the soybean. The SoyFACE row spacing was half that of Mead, so as described above we set the initial carbon to twice that observed at Mead. The denser planting allowed soybean at Soy-FACE to reach higher LAI earlier in the growing season. If this also resulted in thinner leaves at the beginning of the season than with the Mead row spacing, then this could explain the difference in the peak LAI to yield relationship be-tween the two sites. Ricaurte et al. (2016) showed that higher sowing density would increase phyllochron in a linear relationship, which results in a higher LAI measured, which is consistent with our study. JULES also does not account for leaf age on leaf assimilation rate -in reality a lower leaf assimilation is observed in the late season associated with leaf ageing, and it is plausible that this could also be affected by row spacing. Figure 5 also demonstrates that model LAI responds more to ozone concentrations than the observed LAI. One contributing factor is the observed decrease in specific leaf area at SoyFACE in increased ozone (Betzelberger et al., 2012). As mentioned above, this process is not captured by JULES. This issue is particularly pronounced in the Osborne 2015 tuning runs, where the modelled LAI in the ring with target 200 ppb is roughly a third of the peak LAI in the ambient ring.

Conclusions
Climate change and air pollution are a great threat to food production. JULES-crop has been developed to represent crops in the land surface model and allows us to estimate the future climate and air pollution impact on crops. The O 3 impact on crops could be quantified with an improved parameterisation to the existing O 3 damage scheme for C3 plants.
The default soybean biochemical and respiratory parameters in JULES were based on C3 grass parameters. Characteristics of soybean are more similar to a shrub than grass; therefore, parameter calibration is needed to improve the performance of soybean in JULES-crop.
In this paper, the parameters needed to describe soybean in JULES-crop were first revised against observations from the Mead FLUXNET sites to ensure that the crop biochemical and respiratory parameters explicitly represented soybean. Comparison with observations from these sites showed that GPP and LAI were well represented for irrigated soybean at Mead. The O 3 damage parameterisation was subsequently calibrated against leaf gas exchange observations from the Soybean Free Air Concentration Enrichment (Soy-FACE) facility for the O 3 damage, by tuning the sensitivity and critical threshold of O 3 damage. On the whole, JULEScrop reproduces the observed negative correlation between yield and O 3 exposure. It also reproduced the negative impacts of ozone on LAI and the seasonality of phenology, although the simulated LAI was underestimated at SoyFACE. This method of calibrating soybean could be replicated for other crops once data become available and would contribute to more accurate parameters for crop models. The calibration will be applied to a regional and transient run and eventually the newly calibrated JULES-crop for soybean and its sensitivity to O 3 damage, coupled within an Earth system model.
Code availability. This study uses JULES version 5.0 releases. The code and configuration for the SoyFACE runs can be downloaded via the Met Office Science Repository Service (MOSRS) at https:// code.metoffice.gov.uk/trac/roses-u/browser/a/r/8/6/6/trunk (JULES Collaboration, 2018) (registration required) and are freely available subject to accepting the terms of the software licence. The Leaf Simulator can be downloaded from https://code.metoffice.gov.uk/ trac/utils (Williams et al., 2018) (login required).
Accessing the MOSRS requires registration, but once you access the system, there is no information about who is downloading or viewing which pages.
Author contributions. FL led the study design, data analysis and writing. KW contributed substantially to the Mead calibration, data analysis, study design and writing. SS contributed to the writing and study design. APKT contributed to the writing. AW and JG contributed to the study design. EAA contributed the SoyFACE data. TA and DS contributed the Mead data.
Competing interests. The authors declare that they have no conflict of interest.