<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-13-3067-2020</article-id><title-group><article-title>Development of a two-way-coupled ocean–wave model: assessment on a global NEMO(v3.6)–WW3(v6.02) coupled configuration</article-title><alt-title>Development of a two-way-coupled ocean–wave mode</alt-title>
      </title-group><?xmltex \runningtitle{Development of a two-way-coupled ocean--wave mode}?><?xmltex \runningauthor{X.~Couvelard et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Couvelard</surname><given-names>Xavier</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff2">
          <name><surname>Lemarié</surname><given-names>Florian</given-names></name>
          <email>florian.lemarie@inria.fr</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Samson</surname><given-names>Guillaume</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7481-6369</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Redelsperger</surname><given-names>Jean-Luc</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7076-8697</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Ardhuin</surname><given-names>Fabrice</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9309-9681</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Benshila</surname><given-names>Rachid</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5 aff2">
          <name><surname>Madec</surname><given-names>Gurvan</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Univ. Brest, CNRS, IRD, Ifremer, Laboratoire d'Océanographie Physique et Spatiale (LOPS), IUEM, Brest, France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Univ. Grenoble Alpes, Inria, CNRS, Grenoble INP, LJK, 38000 Grenoble, France</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Mercator Océan, Toulouse, France</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>LEGOS, University of Toulouse, CNES, CNRS, IRD, UPS, Toulouse, France</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Sorbonne Universités (UPMC, Univ Paris 06)-CNRS-IRD-MNHN, LOCEAN Laboratory, Paris, France</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Florian Lemarié (florian.lemarie@inria.fr)</corresp></author-notes><pub-date><day>10</day><month>July</month><year>2020</year></pub-date>
      
      <volume>13</volume>
      <issue>7</issue>
      <fpage>3067</fpage><lpage>3090</lpage>
      <history>
        <date date-type="received"><day>11</day><month>July</month><year>2019</year></date>
           <date date-type="rev-request"><day>12</day><month>August</month><year>2019</year></date>
           <date date-type="rev-recd"><day>2</day><month>June</month><year>2020</year></date>
           <date date-type="accepted"><day>8</day><month>June</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2020 Xavier Couvelard et al.</copyright-statement>
        <copyright-year>2020</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020.html">This article is available from https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e162">This paper describes the implementation of a coupling between a three-dimensional ocean
general circulation model (NEMO) and a wave model (WW3) to represent
the interactions of upper-oceanic flow dynamics with surface waves. The focus is on the impact
of such coupling on upper-ocean properties (temperature and currents) and mixed layer depth (MLD)
at global eddying scales. A generic coupling interface has been developed, and the NEMO
governing equations and boundary conditions have been adapted to include wave-induced terms following
the approach of <xref ref-type="bibr" rid="bib1.bibx58" id="text.1"/> and <xref ref-type="bibr" rid="bib1.bibx6" id="text.2"/>. In particular, the contributions of Stokes–Coriolis,
vortex, and surface pressure forces have been implemented on top of the necessary modifications of the
tracer–continuity equation and turbulent closure scheme (a one-equation turbulent kinetic energy – TKE – closure here). To assess the new
developments, we perform a set of sensitivity experiments with a global oceanic configuration at <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
resolution coupled with a wave model configured at <inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> resolution. Numerical simulations show a global
increase in wind stress due to the interaction with waves (via the Charnock coefficient), particularly at high
latitudes, resulting in increased surface currents. The modifications brought to the TKE closure scheme and
the inclusion of a parameterization for Langmuir turbulence lead to a significant increase in the mixing, thus
helping to deepen the MLD. This deepening is mainly located in the Southern Hemisphere and results in
reduced sea surface currents and temperatures.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e212">An accurate representation of ocean surface waves has long been recognized as essential
for a wide range of applications from marine meteorology to ocean and coastal
engineering. Waves also play an important role in the short-term forecasting of extratropical
and  tropical cyclones by regulating sea surface roughness <xref ref-type="bibr" rid="bib1.bibx45 bib1.bibx26 bib1.bibx42" id="paren.3"/>.
More recently, the impact of waves on oceanic circulation at the global scale has triggered
interest from the research and operational community <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx65 bib1.bibx31 bib1.bibx37 bib1.bibx53 bib1.bibx50" id="paren.4"><named-content content-type="pre">e.g.,</named-content></xref>.
In particular, surface waves are important for an accurate representation of air–sea
interactions, and their effect on fluxes of mass, momentum, and energy through the
wavy boundary layer must be taken into account in ocean–atmosphere coupled models.
For example, the momentum flux through the
air–sea interface has traditionally been parameterized
using near-surface winds (typically at 10 m) and the
atmospheric surface layer stability <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx49 bib1.bibx23" id="paren.5"/>.
The physics of the coupling depend on the kinematics and dynamics of the wave field.
This includes a wide range of processes from wind–wave growth, nonlinear wave–wave interaction,
and wave–current interaction to wave dissipation. Such complex processes can only be adequately
represented by a wave model.</p>
      <?pagebreak page3068?><p id="d1e226"><?xmltex \hack{\newpage}?>Besides affecting the air–sea fluxes, waves define the mixing in the oceanic surface boundary
layer (OSBL) via breaking and Langmuir turbulence. For example, <xref ref-type="bibr" rid="bib1.bibx16" id="text.6"/> showed
that Langmuir turbulence should be important over wide areas of the global ocean, more
particularly in the Southern Ocean. In this region, they show that the inclusion of the effect of
surface waves on the upper-ocean mixing during summertime allows for a reduction of systematic
biases in the OSBL depth. Indeed, their large eddy simulations (LESs) suggest that under certain
circumstances wave forcing can lead to large changes in the mixing profile throughout the OSBL
and in the entrainment flux at the base of the OSBL. They concluded that wave forcing is always
important when compared to buoyancy forcing, even in winter. Moreover, <xref ref-type="bibr" rid="bib1.bibx64" id="text.7"/>
and <xref ref-type="bibr" rid="bib1.bibx83" id="text.8"/> emphasized the fact that the Langmuir cell intensity strongly depends
on the alignment between the Stokes drift and wind direction. Langmuir turbulence is maximum
when wind and waves are aligned and becomes weaker as the misalignment becomes larger.
<xref ref-type="bibr" rid="bib1.bibx54" id="text.9"/> highlighted that ignoring the alignment of wind and waves (i.e., assuming
that wind and waves are systematically aligned) in the Langmuir cell parameterizations
leads to excessive mixing, particularly in winter.</p>
      <p id="d1e242">Most previous studies of the impact of ocean–wave interactions at the global scale have
used an offline one-way coupling and included only parts of the wave-induced terms in
the oceanic model governing equations <xref ref-type="bibr" rid="bib1.bibx21 bib1.bibx50" id="paren.10"><named-content content-type="pre">e.g.,</named-content></xref>. In this study,
the objective is to introduce a new online two-way-coupled ocean–wave modeling system
with great flexibility to be relevant for a large range of applications from climate modeling to
regional short-term process studies. This modeling system is based on the Nucleus for European
Modelling of the Ocean <xref ref-type="bibr" rid="bib1.bibx56" id="paren.11"><named-content content-type="pre">NEMO;</named-content></xref> as the oceanic compartment
and WAVEWATCH III® <xref ref-type="bibr" rid="bib1.bibx84" id="paren.12"><named-content content-type="pre">hereinafter WW3;</named-content></xref>
as  the surface wave component. NEMO and WW3 are coupled using the
OASIS Model Coupling Toolkit <xref ref-type="bibr" rid="bib1.bibx82 bib1.bibx29" id="paren.13"><named-content content-type="pre">OASIS-MCT;</named-content></xref>,
which is widely used in the climate and operational community. The various steps for our
implementation are the following: (i) the inclusion of all wave-induced terms in NEMO,
only neglecting the terms relevant for the surf zone, which is outside the scope here; (ii) modification of the NEMO subgrid-scale physics (including the bulk formulation) to
include wave effects and a parameterization for Langmuir turbulence; (iii) development of
the OASIS interface within NEMO and WW3 for the exchange
of data between the models; and (iv) a test of the implementation based on a realistic global
configuration at <inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> for the ocean and <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> for the waves.</p>
      <p id="d1e298">To go into the details of those different steps, the paper is organized as follows. The modifications
brought to the oceanic model primitive equations, their boundary conditions, and the subgrid-scale
physics to account for wave–ocean interactions are described in Sect. <xref ref-type="sec" rid="Ch1.S2"/>. This includes the
addition of the Stokes–Coriolis force, the vortex force, and the wave-induced pressure gradient.
In Sect. <xref ref-type="sec" rid="Ch1.S3"/> our modeling system coupling the NEMO oceanic model and the
WW3 wave model via the OASIS-MCT coupler is described in detail.
Numerical simulations are presented in Sect. <xref ref-type="sec" rid="Ch1.S4"/> using a global configuration at <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
for the oceanic model and <inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> for the wave model. Using sensitivity runs, we assess those
global configurations with particular emphasis on the impact of wave–ocean interactions on mixed layer
depth, sea surface temperature and currents, turbulent kinetic energy (TKE) injection, and kinetic energy.
Finally, in Sect. <xref ref-type="sec" rid="Ch1.S5"/>, we summarize our findings and provide overall comments on the impact of
two-way ocean–wave coupling in global configurations at eddy-permitting resolution.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Inclusion of wave-induced terms in the oceanic model NEMO</title>
      <p id="d1e350">In order to set the necessary notations, we start by introducing the classical primitive equations
solved by the NEMO ocean model. Note that between the two possible options to
formulate the momentum equations, namely the so-called “vector-invariant” and “flux”  forms,
we present the first one here, which will be used for the numerical simulations in Sect. <xref ref-type="sec" rid="Ch1.S4"/>.
With <inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> the horizontal velocity vector, <inline-formula><mml:math id="M8" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> the dia-surface velocity
component, <inline-formula><mml:math id="M9" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> the potential temperature, <inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> the density, <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">ζ</mml:mi></mml:math></inline-formula> the relative vorticity,
<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the hydrostatic pressure, and <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the surface pressure,
the Reynolds-averaged equations (with <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mfenced open="〈" close="〉"><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> the averaging operator omitted here for simplicity) are as follows.

              <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M15" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E1"><mml:mtd><mml:mtext>1</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>f</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:mo>)</mml:mo><mml:mi>v</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>‖</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi>u</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2"><mml:mtd><mml:mtext>2</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable columnspacing="1em" rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi>v</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:mi>f</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:mo>)</mml:mo><mml:mi>u</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>‖</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi>v</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd><mml:mtext>3</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>v</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E4"><mml:mtd><mml:mtext>4</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi>v</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E5"><mml:mtd><mml:mtext>5</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>g</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <?pagebreak page3069?><p id="d1e1056">Here, <inline-formula><mml:math id="M16" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is a nondimensional vertical coordinate, the lateral derivatives <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
have to be considered along the model coordinate, and <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the vertical scale factor given
by <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M21" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> is the local depth and <inline-formula><mml:math id="M22" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is given by an equation of
state <xref ref-type="bibr" rid="bib1.bibx72" id="paren.14"/>. The necessary boundary conditions include  a kinematic surface and bottom
boundary condition, which can be expressed in terms of the vertical velocity <inline-formula><mml:math id="M23" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>,
          <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M24" display="block"><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mfenced open="" close="|"><mml:mi>u</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>v</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>E</mml:mi><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>u</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi>H</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>v</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi>H</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
        with <inline-formula><mml:math id="M25" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> the height of the sea surface and <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>E</mml:mi><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> the mass flux across the sea surface
due to precipitation and evaporation, a momentum surface boundary condition for the Reynolds stress vertical terms,
          <disp-formula id="Ch1.Ex1"><mml:math id="M27" display="block"><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mfenced open="" close="|"><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>u</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mspace width="2em" linebreak="nobreak"/><mml:msub><mml:mfenced open="" close="|"><mml:mrow><mml:mo>-</mml:mo><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        with <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>u</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup><mml:mo>,</mml:mo><mml:msubsup><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
a wind stress vector that represents the part of the stress that drives the ocean,
and a dynamic boundary condition on the free surface leading to the continuity of pressure across the air–sea interface.
The kinematic boundary conditions (<xref ref-type="disp-formula" rid="Ch1.E6"/>) for <inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> translate into
<inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi>E</mml:mi><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>. We do not explicitly include the boundary
conditions for the tracer equations here since they are unchanged from classical primitive equation models
in the presence of wave motions. As mentioned earlier, in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) to (<xref ref-type="disp-formula" rid="Ch1.E5"/>)
prognostic variables have to be interpreted in an Eulerian mean sense even if the averaging operator is
not explicitly included.</p>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Modification of governing equations and boundary conditions</title>
      <p id="d1e1556">Asymptotic expansions of the wave effects based on Eulerian velocities  <xref ref-type="bibr" rid="bib1.bibx58" id="paren.15"/> or
Lagrangian mean equations <xref ref-type="bibr" rid="bib1.bibx6" id="paren.16"/> lead to the same self-consistent set of equations
for weak vertical current shears. These are further applied and discussed by  <xref ref-type="bibr" rid="bib1.bibx80" id="text.17"/>,
<xref ref-type="bibr" rid="bib1.bibx17" id="text.18"/>, <xref ref-type="bibr" rid="bib1.bibx60" id="text.19"/>, and <xref ref-type="bibr" rid="bib1.bibx61" id="text.20"/>. The three-component Stokes drift vector is
<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>,</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>,</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
and is non-divergent at lowest order <xref ref-type="bibr" rid="bib1.bibx6 bib1.bibx11" id="paren.21"/>. The coupled wave–current
equations for the Eulerian mean velocity and tracers in a vector-invariant form (the equivalent flux
form is given in Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>) are as follows.<?xmltex \hack{\newpage}?>

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M34" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E7"><mml:mtd><mml:mtext>7</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>f</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>‖</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi>u</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>F</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>u</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E8"><mml:mtd><mml:mtext>8</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi>v</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:mi>f</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>‖</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi>v</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>F</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>v</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E9"><mml:mtd><mml:mtext>9</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable columnspacing="1em" rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E10"><mml:mtd><mml:mtext>10</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E11"><mml:mtd><mml:mtext>11</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>g</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Here, wave-induced terms are represented with tildes. The <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>F</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>u</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>F</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>v</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> terms
represent the sink–source of wave momentum due to breaking, bottom friction, and wave–turbulence interaction.
These terms will be neglected since they are expected to play a significant role only in the surf zone.
The other extra contributions to the momentum equations include the Stokes–Coriolis force <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mrow><mml:mi mathvariant="normal">St</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Cor</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>,
the vortex force <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and a wave-induced pressure <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">Prs</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>:
            <disp-formula id="Ch1.E12" content-type="numbered"><label>12</label><mml:math id="M40" display="block"><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mrow><mml:mi mathvariant="normal">St</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Cor</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:mi>f</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mi>f</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mn mathvariant="normal">0</mml:mn></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="italic">ζ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">Prs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          where the terms involving horizontal derivatives of <inline-formula><mml:math id="M41" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> have been neglected in
<inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
In <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">Prs</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>
term corresponds to a depth-uniform wave-induced kinematic pressure term<fn id="Ch1.Footn1"><p id="d1e3308">In the notations of <xref ref-type="bibr" rid="bib1.bibx6" id="text.22"/> this term corresponds to <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msup><mml:mi>S</mml:mi><mml:mi>J</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>.</p></fn>, while <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>
is a shear-induced three-dimensional pressure term<fn id="Ch1.Footn2"><p id="d1e3356">In the notations of <xref ref-type="bibr" rid="bib1.bibx6" id="text.23"/> this term corresponds to <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msup><mml:mi>S</mml:mi><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>.</p></fn>  associated with the vertical component of the vortex force.
The vortex force contribution <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can be further simplified by neglecting the
terms involving the vertical shear.
In particular, the vertical component of the vortex force is absorbed in a pressure term <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">Shear</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx6" id="paren.24"><named-content content-type="pre">that gives the <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mi mathvariant="normal">shear</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> term in the notations of</named-content></xref>. That particular term was neglected in <xref ref-type="bibr" rid="bib1.bibx17" id="text.25"/>
because of the generally weak vertical shears in the wave mixed layer. The effect of that term was also found
to be much weaker than <inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> in shallow coastal environments, except in the surf zone.
This assumption has the advantage of leaving the hydrostatic relation
(Eq. <xref ref-type="disp-formula" rid="Ch1.E11"/>) unchanged. Our implementation of wave-induced terms in NEMO is in line
with <xref ref-type="bibr" rid="bib1.bibx17" id="text.26"/> and corresponds to the simplified form of Eq. (<xref ref-type="disp-formula" rid="Ch1.E12"/>):
            <disp-formula id="Ch1.Ex2"><mml:math id="M52" display="block"><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mrow><mml:mi mathvariant="normal">St</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Cor</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:mi>f</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mi>f</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mn mathvariant="normal">0</mml:mn></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo><mml:mspace width="1em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="italic">ζ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mn mathvariant="normal">0</mml:mn></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">Prs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mn mathvariant="normal">0</mml:mn></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          Because of geostrophy, it is obvious that the addition of the Stokes–Coriolis force requires the effect of the
Stokes drift on the mass and tracer advection to be taken into account.
Regarding the joint modification of the tracers and continuity equations, it is clear that constancy
preservation is maintained (i.e., a constant tracer field should remain constant during the advective transport)
and that an additional wave-related forcing must be added to the barotropic mode. The NEMO barotropic mode
has been modified accordingly since the surface kinematic boundary condition (Eq. <xref ref-type="disp-formula" rid="Ch1.E6"/>) in terms
of vertical velocities <inline-formula><mml:math id="M53" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and associated <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>w</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> now reads
            <disp-formula id="Ch1.Ex3"><mml:math id="M55" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mi>w</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>w</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>u</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mfenced open="" close="|"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mfenced open="" close="|"><mml:mi>v</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>E</mml:mi><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          to express the fact that there is a source of mass at the surface that compensates for the convergence of the Stokes drift;
hence, the barotropic mode is
            <disp-formula id="Ch1.E13" content-type="numbered"><label>13</label><mml:math id="M56" display="block"><mml:mrow><mml:mfenced open="{" close=""><mml:mtable class="array" columnalign="left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>(</mml:mo><mml:mi>H</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>(</mml:mo><mml:mi>H</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>P</mml:mi><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mo>+</mml:mo><mml:mi>f</mml:mi><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:mi>g</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mi>H</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mi>G</mml:mi><mml:mi>x</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>x</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>f</mml:mi><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:mi>g</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mi>H</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mi>G</mml:mi><mml:mi>y</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>y</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:math></disp-formula>
          where  <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>H</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∫</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow><mml:mi mathvariant="italic">η</mml:mi></mml:msubsup><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">C</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> represents the
bottom drag coefficients, and <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mi mathvariant="bold">G</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mi>G</mml:mi><mml:mi>x</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mi>G</mml:mi><mml:mi>x</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the usual NEMO forcing
term containing coupling terms from the baroclinic mode and slowly varying barotropic terms (including nonlinear
advective terms) held constant during the barotropic integration to gain efficiency. In Eq. (<xref ref-type="disp-formula" rid="Ch1.E13"/>),
<inline-formula><mml:math id="M60" display="inline"><mml:mover accent="true"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>x</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> and <inline-formula><mml:math id="M61" display="inline"><mml:mover accent="true"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>y</mml:mi></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> contain the additional wave-induced barotropic forcing
terms corresponding to the vertical integral of the <inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mrow><mml:mi mathvariant="normal">St</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Cor</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> terms, which are also held constant during the barotropic integration.
A thorough analysis of the impact of the additional wave-induced terms on energy transfers within an oceanic model can
be found in <xref ref-type="bibr" rid="bib1.bibx77" id="text.27"/>. Note, however, that the study of <xref ref-type="bibr" rid="bib1.bibx77" id="text.28"/> is based on the Craik–Leibovich
equations, which are a special case of the more general wave-averaged primitive equations. Those sets of equations are
equivalent to each other only at lowest order in vertical shear.</p>
</sec>
<?pagebreak page3070?><sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Computation and discretization of Stokes drift velocity profile</title>
      <p id="d1e4330">Reconstructing the full Stokes drift profile <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> in the ocean circulation model would require obtaining the
surface spectra of the Stokes drift from the wave model. Instead, profiles are generally reconstructed
considering a few important parameters, including the  Stokes drift surface value <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
and the norm of the Stokes volume transport <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold">T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula>. In <xref ref-type="bibr" rid="bib1.bibx20 bib1.bibx22" id="text.29"/>,
Stokes drift velocity profiles are derived under the deepwater approximation in the general form
<inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="script">S</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a depth-independent
spatial wavenumber chosen such that the norm of the depth-integrated Stokes transport (assuming an ocean
of infinite depth) is equal to <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold">T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula>. The functions <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from
<xref ref-type="bibr" rid="bib1.bibx20" id="text.30"/> and <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from <xref ref-type="bibr" rid="bib1.bibx22" id="text.31"/> for <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>∈</mml:mo><mml:mo>[</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> are given by
            <disp-formula id="Ch1.Ex4"><mml:math id="M73" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msup><mml:mo>-</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mi mathvariant="italic">π</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msqrt><mml:mi mathvariant="normal">erfc</mml:mi><mml:mo>(</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msqrt><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          with <inline-formula><mml:math id="M74" display="inline"><mml:mi mathvariant="normal">erfc</mml:mi></mml:math></inline-formula> the complementary error function. It can be easily shown that for an ocean of infinite depth,
the vertical integrals of those functions are respectively equal to <inline-formula><mml:math id="M75" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mn mathvariant="normal">6</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:math></inline-formula> for <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1.34089</mml:mn><mml:mrow><mml:mn mathvariant="normal">8</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>≈</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mn mathvariant="normal">5.97</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Standard computations of Stokes
drift in numerical models are done in a finite-difference sense; however, due to the fast decay of
<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with depth, a finite-volume approach seems more adequate in this case.
            <disp-formula id="Ch1.E14" content-type="numbered"><label>14</label><mml:math id="M80" display="block"><mml:mtable columnspacing="1em" rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:msub><mml:mo>)</mml:mo><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:munderover><mml:mi mathvariant="script">S</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">dz</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close="]" open="["><mml:mrow><mml:mi mathvariant="script">I</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="script">I</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          Such a finite-volume interpretation of the Stokes drift velocity can also be found in <xref ref-type="bibr" rid="bib1.bibx54" id="text.32"/> and <xref ref-type="bibr" rid="bib1.bibx85" id="text.33"/>.
The <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> function is more adapted for this kind of approach since the primitive
function only requires special functions available in the Fortran standard.
            <disp-formula id="Ch1.Ex5"><mml:math id="M82" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">I</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mn mathvariant="normal">6</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="[" close="]"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:math></disp-formula>
         <?pagebreak page3071?> Since NEMO is discretized on an Arakawa C grid, the components of the Stokes drift
velocity must be evaluated at cell interfaces, and a simple average weighted by layer thicknesses is used:
            <disp-formula id="Ch1.Ex6"><mml:math id="M83" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msubsup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>u</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>u</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msubsup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>v</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>v</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          Note that no explicit computation of the vertical component of the Stokes drift is necessary since
in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E7"/>)–(<xref ref-type="disp-formula" rid="Ch1.E11"/>) <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> only appears summed
with <inline-formula><mml:math id="M85" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> such that the relevant variable is <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> as a whole.
This quantity is diagnosed from the continuity equation (Eq. <xref ref-type="disp-formula" rid="Ch1.E10"/>, where the temporal
evolution of vertical scale factors <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is given by the free-surface evolution when
a quasi-Eulerian vertical coordinate is used; e.g., <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msup><mml:mi>z</mml:mi><mml:mo>⋆</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> or terrain-following coordinates).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e5543"><bold>(a)</bold> Reconstructed zonal component of a Stokes drift profile for <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold">T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>‖</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M91" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> m s<inline-formula><mml:math id="M93" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
and <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> m s<inline-formula><mml:math id="M95" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>  for a 1 m resolution vertical grid using the <xref ref-type="bibr" rid="bib1.bibx20" id="text.34"/> function (black dots), the <xref ref-type="bibr" rid="bib1.bibx22" id="text.35"/> function (grey dots),
and the finite-volume <xref ref-type="bibr" rid="bib1.bibx22" id="text.36"/> function (black vertical lines).
<bold>(b)</bold> Their continuous counterparts.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f01.png"/>

        </fig>

      <p id="d1e5681">As illustrated in Fig. <xref ref-type="fig" rid="Ch1.F1"/>, for the typical vertical resolution used in most global models the properties
of the discretized Stokes profiles can be very different from their continuous counterparts. Indeed, the
<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> function has been considered superior to <inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> because the
vertical shear near the surface is expected to be better reproduced. However, in Fig. <xref ref-type="fig" rid="Ch1.F1"/> it is shown
that this is no longer the case at a discrete level since the discrete vertical gradients at 1 m of depth turn
out to be larger for <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> compared to <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. In this case, the fast variations
of <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">S</mml:mi><mml:mrow><mml:mi mathvariant="normal">B</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> near the surface cannot be represented by the computational vertical grid.
A vertical resolution finer than the one currently used in most global ocean models near the surface
would be required to properly represent the Stokes drift shear.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Subgrid-scale physics</title>
<sec id="Ch1.S2.SS3.SSS1">
  <label>2.3.1</label><title>Turbulent kinetic energy prognostic equation and boundary conditions</title>
      <p id="d1e5840">Under the assumption of horizontal homogeneity generally retained in general circulation models,
the contribution from Stokes drift to the turbulent kinetic energy (TKE) prognostic equation arises
from the vortex force vertical term <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi><mml:mi>z</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>
in the hydrostatic relation (Eq. <xref ref-type="disp-formula" rid="Ch1.E11"/>). Mimicking the way the TKE equation is usually
derived <xref ref-type="bibr" rid="bib1.bibx78" id="paren.37"><named-content content-type="pre">see, e.g.,</named-content></xref> and using an averaging operator <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:mfenced open="〈" close="〉"><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> satisfying
the “Reynolds properties”, we find that the turbulent fluctuations, defined as <inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mfenced open="〈" close="〉"><mml:mi mathvariant="italic">ϕ</mml:mi></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>=</mml:mo><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>,</mml:mo><mml:mi>u</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
associated with the <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi><mml:mi>z</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> term are
              <disp-formula id="Ch1.Ex7"><mml:math id="M105" display="block"><mml:mrow><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi><mml:mi>z</mml:mi></mml:msubsup><mml:msup><mml:mo>)</mml:mo><mml:mo>′</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            After multiplication by <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and averaging, we obtain
              <disp-formula id="Ch1.Ex8"><mml:math id="M107" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.0}{9.0}\selectfont$\displaystyle}?><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi><mml:mi>z</mml:mi></mml:msubsup><mml:msup><mml:mo>)</mml:mo><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><?xmltex \hack{$\egroup}?><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where the last two terms on the right-hand side cancel, with similar terms appearing when forming the equations
for <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> (see Eqs. A.7 and A.8 in <xref ref-type="bibr" rid="bib1.bibx74" id="altparen.38"/>).
The extra terms associated with the Stokes drift in the horizontally homogeneous TKE equation are thus
<inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, which can be further rewritten as
              <disp-formula id="Ch1.Ex9"><mml:math id="M112" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mfenced close="〉" open="〈"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            The first term will modify the shear production term; it can also be derived by taking the Lagrangian mean of the
wave-resolved TKE equation <xref ref-type="bibr" rid="bib1.bibx4" id="paren.39"/>. The second will enter the TKE transport term that
is usually parameterized as <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mi>e</mml:mi></mml:mrow></mml:math></inline-formula>. The prognostic equation for the turbulent kinetic energy <inline-formula><mml:math id="M114" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> in
NEMO  under the assumption that <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> the eddy viscosity, is thus
              <disp-formula id="Ch1.E15" content-type="numbered"><label>15</label><mml:math id="M117" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.5}{9.5}\selectfont$\displaystyle}?><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mi>e</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="[" close="]"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>v</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vt</mml:mi></mml:msup><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced open="[" close="]"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>e</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="italic">ϵ</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mi>l</mml:mi><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr></mml:mtable><?xmltex \hack{$\egroup}?><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            with <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vt</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> the turbulent diffusivity, <inline-formula><mml:math id="M119" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> the local Brunt–Väisälä frequency,
<inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a dissipative length scale, and <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a constant parameter (generally
such that <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:msqrt><mml:mn mathvariant="normal">2</mml:mn></mml:msqrt></mml:mrow></mml:math></inline-formula>). Once the value of <inline-formula><mml:math id="M123" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> is know, eddy
diffusivity and viscosity are given by
              <disp-formula id="Ch1.Ex10"><mml:math id="M124" display="block"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:msqrt><mml:mi>e</mml:mi></mml:msqrt><mml:mo>,</mml:mo><mml:mspace width="2em" linebreak="nobreak"/><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vt</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Prt</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            with <inline-formula><mml:math id="M125" display="inline"><mml:mi mathvariant="normal">Prt</mml:mi></mml:math></inline-formula> the Prandtl number (see Sect. 10.1.3 in <xref ref-type="bibr" rid="bib1.bibx56" id="altparen.40"/>, for the detailed computation
of <inline-formula><mml:math id="M126" display="inline"><mml:mi mathvariant="normal">Prt</mml:mi></mml:math></inline-formula>), <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a mixing length scale, and <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a constant.</p>
      <?pagebreak page3072?><p id="d1e6907">In addition to the modification of the shear production term in the TKE equation, the wave will affect the
surface boundary condition for <inline-formula><mml:math id="M129" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The Dirichlet boundary condition
traditionally used in NEMO for the TKE variable is modified into a Neumann boundary condition,
              <disp-formula id="Ch1.E16" content-type="numbered"><label>16</label><mml:math id="M132" display="block"><mml:mrow><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">vm</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>e</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mi>g</mml:mi><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">π</mml:mi></mml:mrow></mml:munderover><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi mathvariant="normal">∞</mml:mi></mml:munderover><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msub><mml:mi mathvariant="normal">d</mml:mi><mml:mi mathvariant="italic">ω</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">Φ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            meaning that the injection of TKE at the surface is given by the dissipation of the wave field via the
wave–ocean <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> term, which is a sink term in the wave model energy balance equation
usually dominated by wave breaking, converted into an ocean turbulence source term.  In practice,
this sum of  <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is obtained as a residual of the source term integration; hence, it also includes
unresolved fluxes of energy to the high-frequency tail of the wave model. Due to the placement at cell
interfaces of the TKE variable on the computational grid, the TKE flux is not applied at the free surface
but at the center of the topmost grid cell (i.e., at <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). This amounts to interpreting the half-grid cell
at the top as a constant flux layer, which is consistent with the surface layer Monin–Obukhov theory.</p>
      <p id="d1e7068">The length scales <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are computed via two intermediate length scales <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, respectively estimating the maximum upward and downward displacement of a water
parcel with a given initial kinetic energy. <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are first initialized to the length
scale proposed by <xref ref-type="bibr" rid="bib1.bibx32" id="text.41"/>: <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>e</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msqrt></mml:mrow></mml:math></inline-formula>.
The resulting length scales are then limited not only by the distance to the surface and to the bottom but
also by the distance to a strongly stratified portion of the water column such as the thermocline. This
limitation amounts to controlling the vertical gradients of <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
such that they are not larger that the variations of depth <xref ref-type="bibr" rid="bib1.bibx56" id="paren.42"/>
              <disp-formula id="Ch1.Ex11"><mml:math id="M145" display="block"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced close="|" open="|"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mo>⋅</mml:mo></mml:msub></mml:mrow></mml:mfenced><mml:mo>≤</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="2em"/><mml:msub><mml:mi>l</mml:mi><mml:mo>⋅</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub></mml:mrow></mml:math></disp-formula>
            Then, the dissipative and mixing length scales are given by <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub></mml:mrow></mml:msqrt></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>min⁡</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>. Following <xref ref-type="bibr" rid="bib1.bibx68" id="text.43"/>
(their Sect. 4.2.3), a boundary condition consistent with the Monin–Obukhov similarity theory for
the length scale <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (while <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">up</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> necessitates only a bottom boundary condition) is
              <disp-formula id="Ch1.Ex12"><mml:math id="M150" display="block"><mml:mrow><mml:msub><mml:mi>l</mml:mi><mml:mi mathvariant="normal">dwn</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            with <inline-formula><mml:math id="M151" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> the von Karman constant and <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="italic">ε</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the constant parameters in the
TKE closure. The surface roughness length <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> can be directly estimated from the significant wave
height provided by the wave model as <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.6</mml:mn><mml:msub><mml:mi>H</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx67" id="paren.44"><named-content content-type="post">their Eq. 5</named-content></xref>, which provides
a proxy for the scale of the breaking waves. Note that in our study, no explicit parameterization of the mixing
induced by near-inertial waves has been added <xref ref-type="bibr" rid="bib1.bibx71" id="paren.45"/>. As highlighted by <xref ref-type="bibr" rid="bib1.bibx21" id="text.46"/>, without
activating this ad hoc parameterization in the standard NEMO TKE scheme, the model
does not mix deeply enough. They also speculated that this ad hoc mixing could mask the effects of
wave-related mixing processes such as Langmuir turbulence. For this reason, it is  not used in the
present simulations.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <label>2.3.2</label><title>Langmuir turbulence parameterization</title>
      <?pagebreak page3073?><p id="d1e7506">Langmuir mixing is parameterized following the approach of <xref ref-type="bibr" rid="bib1.bibx12" id="text.47"/>. This parameterization
takes the form of an additional source term <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the TKE equation (<xref ref-type="disp-formula" rid="Ch1.E15"/>).
<inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is defined as
              <disp-formula id="Ch1.Ex13"><mml:math id="M158" display="block"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi>w</mml:mi><mml:mi mathvariant="normal">LC</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents the vertical velocity profile associated with Langmuir cells
and <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> their expected depth. Following <xref ref-type="bibr" rid="bib1.bibx12" id="text.48"/>, <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are
given by
              <disp-formula id="Ch1.Ex14"><mml:math id="M163" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced close="" open="{"><mml:mtable class="array" columnalign="left left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo><mml:mi>sin⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="italic">π</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>if</mml:mtext><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>-</mml:mo><mml:mi>z</mml:mi><mml:mo>≤</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mtext>otherwise</mml:mtext></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow><mml:mi mathvariant="italic">η</mml:mi></mml:munderover><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi>z</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where <inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> is the portion of the surface Stokes drift contributing to
Langmuir cell intensity and <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a constant parameter. In the absence of information
about the wave field it is generally assumed that <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo><mml:mo>∝</mml:mo><mml:msqrt><mml:mrow><mml:mo>‖</mml:mo><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mo>‖</mml:mo></mml:mrow></mml:msqrt></mml:mrow></mml:math></inline-formula>.
As mentioned in the Introduction, <xref ref-type="bibr" rid="bib1.bibx64" id="text.49"/> and <xref ref-type="bibr" rid="bib1.bibx83" id="text.50"/> showed that
the intensity of Langmuir cells is largely influenced by the angle between the Stokes drift and the
wind direction. To reflect this dependency we account for this angle in our definition of
<inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> via
              <disp-formula id="Ch1.E17" content-type="numbered"><label>17</label><mml:math id="M168" display="block"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo><mml:mo>=</mml:mo><mml:mo movablelimits="false">max⁡</mml:mo><mml:mfenced open="{" close="}"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">e</mml:mi><mml:mi mathvariant="italic">τ</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            with <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">e</mml:mi><mml:mi mathvariant="italic">τ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the unit vector in the wind stress direction.
The difference between the surface Stokes drift <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> given by Eq. (<xref ref-type="disp-formula" rid="Ch1.E17"/>) is shown
in Fig. <xref ref-type="fig" rid="Ch1.F2"/> and compared to the usual parameterization of <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> as
<inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.377</mml:mn><mml:msqrt><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>‖</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:msqrt></mml:mrow></mml:math></inline-formula> in the uncoupled case <xref ref-type="bibr" rid="bib1.bibx56" id="paren.51"><named-content content-type="pre">see</named-content></xref>.
The modulation of <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">LC</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> depending on the wind stress orientation
significantly reduces the input of the surface Stokes drift contributing to Langmuir cell intensity, especially
in the Southern Ocean, while other regions are less affected.
Finally, a value for the parameter <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> must be chosen. Based on single-column
experiments detailed in Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>,
we find that parameter values in the range 0.15–0.3 provide satisfactory results
compared to the LESs of <xref ref-type="bibr" rid="bib1.bibx62" id="text.52"/> and will be considered for the numerical experiments
discussed later in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e8058">Annual average of the surface Stokes drift module <inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> (m s<inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> <bold>(a)</bold>,
the portion of the Stokes drift aligned with the wind, as given in Eq. (<xref ref-type="disp-formula" rid="Ch1.E17"/>) <bold>(b)</bold>,
and the surface Stokes drift as parameterized by <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.377</mml:mn><mml:msqrt><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>‖</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:msqrt></mml:mrow></mml:math></inline-formula>
in the uncoupled case <bold>(c)</bold>.</p></caption>
            <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f02.png"/>

          </fig>

      <p id="d1e8141">While the <xref ref-type="bibr" rid="bib1.bibx12" id="text.53"/> parameterization was already implemented in NEMO, there are three major
novelties in our implementation: (i) the online coupled strategy allows us to use the
surface Stokes drift directly delivered by the wave model instead of the
original value empirically estimated from the wind speed (e.g., 1.6 % of the 10 m wind).
(ii) We only considered the component of the Stokes drift aligned with the wind, and
(iii) based on a series of single-column simulations (see Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>)
the coefficient <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> evaluated as 0.15 by <xref ref-type="bibr" rid="bib1.bibx12" id="text.54"/> is set to a 0.3 value. Those
changes, together with the new surface boundary condition for the TKE equation, lead to a
deeper penetration of the TKE inside the mixed layer and, as shown in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2.SSS3"/>,
greatly improved the MLD distribution.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Modeling system and coupling strategy</title>
      <p id="d1e8175">Our coupled model is based on the NEMO oceanic model, the WW3
wave model, and the OASIS library for data exchange and synchronization
between the two components.</p>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Numerical models and coupling infrastructure</title>
<sec id="Ch1.S3.SS1.SSSx1" specific-use="unnumbered">
  <title>The ocean model: NEMO</title>
      <p id="d1e8190">NEMO is a state-of-the-art primitive-equation, split–explicit, free-surface oceanic model
whose equations are formulated both in the vector-invariant and flux forms (see Eq. <xref ref-type="disp-formula" rid="Ch1.E1"/>
for the vector-invariant form). The equations are discretized using a generalized vertical coordinate
featuring, among others, the <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:msup><mml:mi>z</mml:mi><mml:mo>⋆</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> coordinate with partial-step bathymetry and the <inline-formula><mml:math id="M181" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> coordinate,
as well as a mixture of both <xref ref-type="bibr" rid="bib1.bibx56" id="paren.55"/>. For efficiency and accuracy in the representation of
external gravity wave propagation, model equations are split between a barotropic mode and a baroclinic
mode to allow the possibility to adopt specific numerical treatments in each mode. The NEMO
equations are spatially discretized on an Arakawa C grid in the horizontal and a Lorenz grid in the vertical,
and the time dimension is discretized using a leapfrog scheme with a modified Robert-Asselin filter to
damp the spurious numerical mode associated with leapfrog <xref ref-type="bibr" rid="bib1.bibx51" id="paren.56"/>. For the current study
the NEMO equations have been modified to include wave effects as described in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E7"/>)
and (<xref ref-type="disp-formula" rid="Ch1.E13"/>). Moreover, the modifications to the standard NEMO one-equation
TKE closure scheme are given in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>.</p>
</sec>
<sec id="Ch1.S3.SS1.SSSx2" specific-use="unnumbered">
  <title>The wave model: WW3</title>
      <?pagebreak page3074?><p id="d1e8232">The NEMO ocean model has been coupled to the WW3 wave model.
In numerical models, waves are generally described using several phase and amplitude parameters.
We provide only the details sufficient to understand the coupling of waves with the oceanic
model here, and an exhaustive description of WW3 is given by <xref ref-type="bibr" rid="bib1.bibx84" id="text.57"/>.
WW3 integrates the wave action equation <xref ref-type="bibr" rid="bib1.bibx48" id="paren.58"/> with the spectral density
of wave action  <inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> discretized in wavenumber <inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
and wave propagation direction  <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for the spectral space (the subscript <inline-formula><mml:math id="M185" display="inline"><mml:mi mathvariant="normal">w</mml:mi></mml:math></inline-formula> is used here to avoid confusion with previously introduced notations):
              <disp-formula id="Ch1.E18" content-type="numbered"><label>18</label><mml:math id="M186" display="block"><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ϕ</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">λ</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">λ</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi>k</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="italic">θ</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>S</mml:mi><mml:mi mathvariant="italic">σ</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where <inline-formula><mml:math id="M187" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is longitude, <inline-formula><mml:math id="M188" display="inline"><mml:mi mathvariant="italic">ϕ</mml:mi></mml:math></inline-formula> is latitude, and <inline-formula><mml:math id="M189" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> is the net spectral source term that includes
the sum of the rate of change of the surface elevation variance due to interactions with the atmosphere via
wind–wave generation and swell dissipation (<inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), nonlinear wave–wave interaction (<inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">nl</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>),
and interaction with the upper ocean that is generally dominated by wave breaking (<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>).
Those parameterized source terms are important in wave–ocean coupling. Indeed, as shown earlier
in Eq. (<xref ref-type="disp-formula" rid="Ch1.E16"/>), the <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> term is used to compute the TKE flux transmitted to the ocean,
and the <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> term enters the computation of the wave-supported stress. They are computed here
following <xref ref-type="bibr" rid="bib1.bibx9" id="text.59"/>.
In Eq. (<xref ref-type="disp-formula" rid="Ch1.E18"/>), the dot variables correspond to a propagation speed given by the following.

                  <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M195" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E19"><mml:mtd><mml:mtext>19</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mover accent="true"><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub><mml:mi>cos⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mfenced open="" close="|"><mml:mi>v</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:msup><mml:mi>R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E20"><mml:mtd><mml:mtext>20</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mover accent="true"><mml:mi mathvariant="italic">λ</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub><mml:mi>sin⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>u</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfenced><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>R</mml:mi><mml:mi>cos⁡</mml:mi><mml:mi mathvariant="italic">ϕ</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E21"><mml:mtd><mml:mtext>21</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="italic">θ</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub><mml:mi>sin⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mi>tan⁡</mml:mi><mml:mi mathvariant="italic">ϕ</mml:mi><mml:msup><mml:mi>R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:mi>sin⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ϕ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>cos⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi>cos⁡</mml:mi><mml:mi mathvariant="italic">ϕ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mi>R</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E22"><mml:mtd><mml:mtext>22</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mover accent="true"><mml:mi>k</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">σ</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo mathvariant="bold">⋅</mml:mo><mml:mi mathvariant="bold">∇</mml:mi><mml:mi>D</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo mathvariant="bold">⋅</mml:mo><mml:mi mathvariant="bold">∇</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              Here, <inline-formula><mml:math id="M196" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> is the Earth's radius, <inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>u</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mi>v</mml:mi></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
represents the surface currents provided by the ocean model, <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the group velocity,
<inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the absolute radian frequency, and <inline-formula><mml:math id="M200" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> the mean water depth.
Equation (<xref ref-type="disp-formula" rid="Ch1.E18"/>) is solved for each spectral component <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
coupled by the advection and source terms. Equations (<xref ref-type="disp-formula" rid="Ch1.E19"/>)–(<xref ref-type="disp-formula" rid="Ch1.E22"/>)
show how the oceanic currents affect the advection of the wave action density; there are also indirect
effects via the source term <xref ref-type="bibr" rid="bib1.bibx7" id="paren.60"/>.</p>
</sec>
<sec id="Ch1.S3.SS1.SSSx3" specific-use="unnumbered">
  <title>The coupler: OASIS-MCT</title>
      <p id="d1e8936">The practical coupling between NEMO and WW3 has been implemented using
the OASIS-MCT <xref ref-type="bibr" rid="bib1.bibx82 bib1.bibx29" id="paren.61"/> software primarily developed for use in
multicomponent climate models. This software provides the tools to couple various models at low
implementation and performance overhead. In particular, thanks to MCT <xref ref-type="bibr" rid="bib1.bibx44" id="paren.62"/>,
it includes the parallelization of the coupling communications and runtime grid interpolations. For
efficiency, interpolations are formulated in the form of a matrix–vector multiplication whereby the matrix
containing the mapping weights is computed offline once for all. In practice, after compiling
OASIS-MCT, the resulting library is linked to the component models so that they have
access to the specific interpolation and data exchange subroutines. Now that we have described the
different components involved in our coupled system, we go into the details of the nature of the data
exchanged between both models.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Oceanic surface momentum flux computation</title>
      <p id="d1e8954">Surface waves affect the momentum exchange between the ocean and the atmosphere in two different ways.
First, the modification of surface roughness acts on the incoming atmospheric momentum flux <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>.
Second, a part of the momentum flux from the atmosphere is consumed by the wave field and contributes to the growing
waves (the so-called wave-supported stress); conversely, the waves release momentum to the ocean when they break
and dissipate. This implies that the wind stress transferred to the oceanic model
(we call it <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) is different from the atmospheric wind stress <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>.
These two coupling processes are taken into account in our coupled framework.</p>
      <p id="d1e8990">The 10 m wind <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is sent to the wave model, which internally
computes the dimensionless Charnock parameter <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> characterizing the sea
surface roughness <xref ref-type="bibr" rid="bib1.bibx24 bib1.bibx47" id="paren.63"/>. This information is used by the
wave model to compute its own atmospheric wind stress <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>
assuming neutral stratification, i.e., <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">DN</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>‖</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup><mml:mo>‖</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>  with <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">DN</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a neutral drag coefficient, which
is function of the Charnock parameter.  Then the wave model computes the momentum flux transferred to the
ocean <inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>. Using the latest available values
of <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
and <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, the oceanic model computes an atmospheric wind stress <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>
using its own bulk formulation, and the local value of the momentum flux going into the water column is  diagnosed as
            <disp-formula id="Ch1.E23" content-type="numbered"><label>23</label><mml:math id="M216" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> quantities are interpolated from the wave grid to the oceanic grid.
In NEMO, the wind stress is computed using the IFS (Integrated Forecasting System: <uri>https://www.ecmwf.int/en/forecasts/documentation-and-support/changes-ecmwf-model/ifs-documentation</uri>, last access: 2 July 2020)
bulk formulation such as implemented in the AeroBulk (<uri>https://github.com/brodeau/aerobulk</uri>, last access: 2 July 2020) package
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.64"/>. In particular, the roughness length that enters the definition of the drag coefficient is
a function of the Charnock parameter <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
            <disp-formula id="Ch1.Ex15"><mml:math id="M219" display="block"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi>u</mml:mi><mml:mo>⋆</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow><mml:mi>g</mml:mi></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ν</mml:mi><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mo>⋆</mml:mo></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.11</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mo>⋆</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula> is the friction velocity, and <inline-formula><mml:math id="M222" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> the air kinematic viscosity whose contribution
is significant only asymptotically at very low wind speed. Note that in the uncoupled case the default value of the Charnock
parameter is <inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.018</mml:mn></mml:mrow></mml:math></inline-formula>. In our implementation, the momentum fluxes are computed using the absolute
wind <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> at 10 m rather than the relative wind <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
Indeed, several recent studies have emphasized that the use of relative winds<?pagebreak page3075?> is relevant only when a full coupling with an
atmospheric model is available since in a forced mode it leads to an unrealistically large loss of oceanic eddy kinetic energy <xref ref-type="bibr" rid="bib1.bibx70" id="paren.65"><named-content content-type="pre">e.g.,</named-content></xref>.
This is not a limitation of our approach since a simple modification of a namelist parameter allows us to run with relative winds,
but this case is not investigated in the present study.</p>
      <p id="d1e9416">In our coupling strategy two different values of the atmospheric wind stress and the wave-to-ocean wind stress
are computed with two different bulk formulations. This strategy is not fully satisfactory since it breaks the momentum conservation.
However, it was necessary in practice since the WW3 results were very sensitive to the bulk formulation, and at the same
time it was not conceivable to use the WW3 bulk formulation to force the ocean model because the latter ignores the
effect of stratification in the atmospheric surface layer. Previous implementations in NEMO
<xref ref-type="bibr" rid="bib1.bibx21 bib1.bibx1 bib1.bibx75 bib1.bibx50 bib1.bibx85" id="paren.66"><named-content content-type="pre">e.g.,</named-content></xref> assumed that the wave field only acts on the
norm of <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and not on its orientation. Instead of Eq. (<xref ref-type="disp-formula" rid="Ch1.E23"/>), the atmospheric
wind stress was corrected as follows.
            <disp-formula id="Ch1.Ex16"><mml:math id="M227" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">oce</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:math></disp-formula>
          However, this approach potentially leads to artificially large values of <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> when
<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is small, and it does not take into account the slight change in
<inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> direction induced by the waves.<?xmltex \hack{\break}?></p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Additional details about the practical implementation</title>
      <p id="d1e9529">In Table <xref ref-type="table" rid="Ch1.T1"/> the different variables exchanged between the oceanic and wave models are given.
All variables are 2D variables, meaning that no 3D arrays are exchanged through the coupler. All 2D interpolations
are made through a distance-weighted bilinear interpolation. The time discretization steps <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>
for WW3 and <inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="normal">nemo</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for NEMO are generally different with
<inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub><mml:mo>&gt;</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="normal">nemo</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and chosen such that <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="normal">nemo</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>∈</mml:mo><mml:mi mathvariant="double-struck">N</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>). In this case, coupling fields from NEMO to WW3 are
averaged in time between two exchanges, while fields from WW3 to NEMO are sent every
<inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> steps and therefore updated every <inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> time steps in NEMO. If
<inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub><mml:mo>&gt;</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="normal">nemo</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the coupler time step is set to <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Our current
implementation does not include an explicit coupling between waves and sea ice, while it is known that
waves lead to ice breakup, pancake ice formation, and associated enhancement of both freezing and melting;
in return, this wave dissipation in ice-covered water <xref ref-type="bibr" rid="bib1.bibx76" id="paren.67"><named-content content-type="pre">e.g.,</named-content></xref> leads to ice drift. Such explicit
coupling is currently under development within the NEMO framework <xref ref-type="bibr" rid="bib1.bibx19" id="paren.68"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e9725">Variables exchanged between NEMO (O) and WW3 (W) via the  OASIS-MCT coupler.
The <inline-formula><mml:math id="M240" display="inline"><mml:mn mathvariant="normal">10</mml:mn></mml:math></inline-formula> m wind <inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is interpolated online by WW3 and does not go through the  OASIS-MCT coupler.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Variable</oasis:entry>
         <oasis:entry colname="col2">Description</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">Units</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Oceanic surface currents</oasis:entry>
         <oasis:entry colname="col3">O<inline-formula><mml:math id="M243" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>W</oasis:entry>
         <oasis:entry colname="col4">m s<inline-formula><mml:math id="M244" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M246" display="inline"><mml:mn mathvariant="normal">10</mml:mn></mml:math></inline-formula> m winds from external dataset</oasis:entry>
         <oasis:entry colname="col3">O<inline-formula><mml:math id="M247" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>W</oasis:entry>
         <oasis:entry colname="col4">m s<inline-formula><mml:math id="M248" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">h</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Sea surface Stokes drift</oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M250" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">m s<inline-formula><mml:math id="M251" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold">T</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Norm of the Stokes drift volume transport</oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M253" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">m<inline-formula><mml:math id="M254" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M255" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Φ</mml:mi><mml:mi mathvariant="normal">oc</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">TKE surface flux multiplied by <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M258" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">W m<inline-formula><mml:math id="M259" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Charnock parameter</oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M261" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">w</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Wave-supported stress</oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M263" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">N m<inline-formula><mml:math id="M264" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Wave-induced pressure</oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M266" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">m<inline-formula><mml:math id="M267" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M268" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Significant wave height</oasis:entry>
         <oasis:entry colname="col3">W<inline-formula><mml:math id="M270" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula>O</oasis:entry>
         <oasis:entry colname="col4">m</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><?xmltex \opttitle{Global $1/4{{}^{{\circ}}}$ coupled wave--ocean simulations}?><title>Global <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> coupled wave–ocean simulations</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Experimental setup and experiments</title>
<sec id="Ch1.S4.SS1.SSS1">
  <label>4.1.1</label><title>The global coupled ORCA25 configuration</title>
      <p id="d1e10251">The wave hindcasts presented here are all based on the WW3  model in its version 6.02
configured with a single grid at <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.5</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> resolution in longitude and latitude.
A spectral grid with 24 directions and 31 frequencies is exponentially spaced over the interval <inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mo>min⁡</mml:mo></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
with <inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mo>min⁡</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.037</mml:mn></mml:mrow></mml:math></inline-formula> Hz and <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.7</mml:mn></mml:mrow></mml:math></inline-formula> Hz.
A one-step monotonic third-order coupled space–time advection scheme (also called the ultimate quickest scheme)
is used with a specific procedure to alleviate the so-called garden sprinkler effect <xref ref-type="bibr" rid="bib1.bibx79" id="paren.69"/>.
As suggested in <xref ref-type="bibr" rid="bib1.bibx63" id="text.70"/>, the dissipation induced by wave breaking is proportional to the local
saturation spectrum <xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx66" id="paren.71"><named-content content-type="pre">see also</named-content></xref>.
The wind input growth rate at high frequency is based on the formulation of <xref ref-type="bibr" rid="bib1.bibx46" id="text.72"/> with an
additional “sheltering” term to reduce the effective winds for the shorter waves <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx13" id="paren.73"/>.
For the computation of nonlinear wave–wave interactions, the discrete interaction
approximation of <xref ref-type="bibr" rid="bib1.bibx40" id="text.74"/> is used.
This last approximation is known to be inaccurate, but it is thought that the associated errors are usually
compensated for by a proper adjustment of the dissipation source term  <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx5" id="paren.75"/>.
As mentioned earlier in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>, the model
was run with 10 m winds, without any air–sea stability correction. No wave measurements
were assimilated in the model, but the stand-alone wave model was developed based on spectral
buoy and synthetic aperture
radar (SAR) data <xref ref-type="bibr" rid="bib1.bibx9" id="paren.76"/> and calibrated against altimeter data by adjusting the
wind–wave coupling parameter <xref ref-type="bibr" rid="bib1.bibx66" id="paren.77"/>. The WW3 time step for
the global configurations is <inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi mathvariant="normal">ww</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3600</mml:mn></mml:mrow></mml:math></inline-formula> s.</p>
      <?pagebreak page3076?><p id="d1e10371">For the oceanic component, we use a global ORCA025 configuration at a <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> horizontal
resolution <xref ref-type="bibr" rid="bib1.bibx15" id="paren.78"/>. The vertical grid is designed with 75 vertical <inline-formula><mml:math id="M278" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> levels with vertical
spacing increasing with depth. Grid thickness is about 1 m near the surface and increases
with depth to reach <inline-formula><mml:math id="M279" display="inline"><mml:mn mathvariant="normal">200</mml:mn></mml:math></inline-formula> m at the bottom. Partial steps are used to represent the bathymetry.
The LIM3 sea ice model is used for the sea ice dynamics and thermodynamics <xref ref-type="bibr" rid="bib1.bibx73" id="paren.79"/>.
The vertical mixing coefficients are obtained from the one-equation TKE scheme described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>,
and the convective processes are mimicked using an enhanced vertical diffusion parameterization that
increases vertical diffusivity to 10 m<inline-formula><mml:math id="M280" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M281" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at which static instability occurs. Water density
is computed from temperature and salinity through the use of a polynomial formulation of the  <xref ref-type="bibr" rid="bib1.bibx81" id="text.80"/>
nonlinear equation of state <xref ref-type="bibr" rid="bib1.bibx72" id="paren.81"/>.
The vector-invariant form of momentum advection
uses <xref ref-type="bibr" rid="bib1.bibx3" id="text.82"/> for the vorticity and a specific formulation to control the Hollingsworth instability
<xref ref-type="bibr" rid="bib1.bibx35" id="paren.83"/>. Momentum lateral viscosity is biharmonic and acts along geopotential surfaces. It is set
to a value of <inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">11</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M283" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M284" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at the Equator and varies proportionally to <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>
away from the Equator. Advection of tracers is performed with a
flux-corrected transport (FCT) scheme <xref ref-type="bibr" rid="bib1.bibx55" id="paren.84"/>, and lateral diffusion of tracers is harmonic and acts
along an iso-neutral surface. It is set to a value of 300 m<inline-formula><mml:math id="M286" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M287" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at the Equator, which varies
proportionally to <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>. The bottom
friction is nonlinear and the lateral boundary condition is free-slip. In this setup, the baroclinic time step
is set to <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="normal">nemo</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">900</mml:mn></mml:mrow></mml:math></inline-formula> s and a barotropic time step <inline-formula><mml:math id="M290" display="inline"><mml:mn mathvariant="normal">30</mml:mn></mml:math></inline-formula> times smaller. Compared to
the standard uncoupled ORCA025 configuration, the additional computational cost associated with WW3
and the exchanges through the coupler is about 20 %.</p>
</sec>
<sec id="Ch1.S4.SS1.SSS2">
  <label>4.1.2</label><title>Atmospheric forcings</title>
      <p id="d1e10563">The atmospheric fields used to force  both ocean and wave models are based on the ECMWF (European Centre for
Medium-Range Weather Forecasts) ERA-Interim reanalysis <xref ref-type="bibr" rid="bib1.bibx34" id="paren.85"/>. Corrections have been applied to guarantee
that the ERA-Interim mean states for rainfall as well as shortwave and longwave radiative fluxes are consistent with satellite observations
from the Remote Sensing Systems (RSS) Passive Microwave Water Cycle (PMWC) product <xref ref-type="bibr" rid="bib1.bibx41" id="paren.86"/> and
GEWEX SRB 3.1 data (<uri>https://gewex-srb.larc.nasa.gov/</uri>, last access: 2 July 2020).
Momentum and heat turbulent surface fluxes are computed using the IFS bulk formulation from the AeroBulk package
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.87"/> using air temperature and humidity at 2 m, mean sea level pressure, and 10 m winds.</p>
</sec>
<sec id="Ch1.S4.SS1.SSS3">
  <label>4.1.3</label><title>Sensitivity experiments and objectives</title>
      <p id="d1e10586">Sensitivity experiments have been conducted to check the proper implementation of various
components of the present coupled modeling system. For the sake of clarity, our developments are split
into four components: (i) the modification of the wind stress by waves through the Charnock
parameter and the inclusion of wave-supported stress, (ii) the modifications of the NEMO
governing equations through the Stokes–Coriolis, vortex force, and wave-induced surface pressure terms,
(iii) the addition of a Langmuir turbulence parameterization, and (iv) the
modifications to the TKE scheme. As summarized in Table <xref ref-type="table" rid="Ch1.T2"/>, sensitivity experiments
are designed in such a way to incrementally increase the level of complexity and test the effect
of each component.
The No_CPL experiment corresponds to the classical NEMO setup in which the wave effect
is parameterized through a wind-stress-dependent TKE surface boundary condition as suggested
by <xref ref-type="bibr" rid="bib1.bibx30" id="text.88"/>. In this approach, a Dirichlet surface boundary condition is used and expressed
as follows: <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:mi>e</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">15.8</mml:mn><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">CB</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>
with <inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">CB</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula>. Based on the results of <xref ref-type="bibr" rid="bib1.bibx59" id="text.89"/> we expect that in
the uncoupled case the nature of the boundary condition (i.e., Dirichlet vs. Neumann) does not
significantly impact numerical solutions<fn id="Ch1.Footn3"><p id="d1e10677">In <xref ref-type="bibr" rid="bib1.bibx59" id="text.90"/> the authors consider a
Dirichlet boundary condition such that <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:mi>e</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">15.8</mml:mn><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">CB</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:msubsup><mml:mi>u</mml:mi><mml:mo>⋆</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>
and an equivalent Neumann condition <inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msub><mml:mfenced close="|" open=""><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mi>e</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">CB</mml:mi></mml:msub><mml:msubsup><mml:mi>u</mml:mi><mml:mo>⋆</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>.
The authors claim that numerical solutions using a Dirichlet condition instead of a Neumann condition are qualitatively similar.</p></fn>.
The WS_CPL experiment is identical as No_CPL except that
the wave coupling is introduced within the wind stress computation, as described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>. The
ST_CPL experiment is as WS_CPL except that all terms relative
to the Stokes drift described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS1"/> are added
in NEMO. TKE_CPL corresponds to ST_CPL but with the modified TKE scheme described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS1"/>. All_CPL (1 and 2)
experiments are like TKE_CPL but with
a fully modified TKE scheme including the Langmuir cell parameterization described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS2"/>.
All those simulations have been performed for 2 years (2013–2014), during which 2013 is spin-up and
only 2014 is analyzed.
We considered 2 years sufficient to illustrate the fact that our developments were actually producing the
expected results. Integrating longer in time could also lead to drifts in the stratification independently from the
wave effects and could thus distort our interpretation.
In any case, it must be clear that the objective here is not to go through a thorough physical
analysis of coupled solutions but to check and validate our numerical developments.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e10792">Various model configurations analyzed in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2"/>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Case</oasis:entry>
         <oasis:entry colname="col2">O–W coupling</oasis:entry>
         <oasis:entry colname="col3">Wave-supported stress</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mrow><mml:mi mathvariant="normal">St</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Cor</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>,</oasis:entry>
         <oasis:entry colname="col5">Langmuir cell</oasis:entry>
         <oasis:entry colname="col6">Modified TKE</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">+ Charnock parameter</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">VF</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-script">W</mml:mi><mml:mi mathvariant="normal">Prs</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">parameterization (<inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:mi mathvariant="normal">rn</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">lc</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col6">scheme</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">No_CPL</oasis:entry>
         <oasis:entry colname="col2">no</oasis:entry>
         <oasis:entry colname="col3">no</oasis:entry>
         <oasis:entry colname="col4">no</oasis:entry>
         <oasis:entry colname="col5">no</oasis:entry>
         <oasis:entry colname="col6">no</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">WS_CPL</oasis:entry>
         <oasis:entry colname="col2">two-way</oasis:entry>
         <oasis:entry colname="col3">yes</oasis:entry>
         <oasis:entry colname="col4">no</oasis:entry>
         <oasis:entry colname="col5">no</oasis:entry>
         <oasis:entry colname="col6">no</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST_CPL</oasis:entry>
         <oasis:entry colname="col2">two-way</oasis:entry>
         <oasis:entry colname="col3">yes</oasis:entry>
         <oasis:entry colname="col4">yes</oasis:entry>
         <oasis:entry colname="col5">no</oasis:entry>
         <oasis:entry colname="col6">no</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">TKE_CPL</oasis:entry>
         <oasis:entry colname="col2">two-way</oasis:entry>
         <oasis:entry colname="col3">yes</oasis:entry>
         <oasis:entry colname="col4">yes</oasis:entry>
         <oasis:entry colname="col5">no</oasis:entry>
         <oasis:entry colname="col6">yes</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">All_CPL1</oasis:entry>
         <oasis:entry colname="col2">two-way</oasis:entry>
         <oasis:entry colname="col3">yes</oasis:entry>
         <oasis:entry colname="col4">yes</oasis:entry>
         <oasis:entry colname="col5">yes (0.15)</oasis:entry>
         <oasis:entry colname="col6">yes</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">All_CPL2</oasis:entry>
         <oasis:entry colname="col2">two-way</oasis:entry>
         <oasis:entry colname="col3">yes</oasis:entry>
         <oasis:entry colname="col4">yes</oasis:entry>
         <oasis:entry colname="col5">yes (0.30)</oasis:entry>
         <oasis:entry colname="col6">yes</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
</sec>
<?pagebreak page3077?><sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Numerical results</title>
<sec id="Ch1.S4.SS2.SSS1">
  <label>4.2.1</label><title>Wave impact on oceanic wind stress</title>
      <p id="d1e11059">The wave distribution being inhomogeneous on the globe, it is expected that with the wave-modified wind stress
parameterization the stress should follow the wave patterns more closely.
In Fig. <xref ref-type="fig" rid="Ch1.F3"/>, the seasonal average of the significant wave height and of the difference between the Charnock
coefficient computed by the wave model and the default constant value used in the uncoupled case (<inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.018</mml:mn></mml:mrow></mml:math></inline-formula>) are shown.
As expected, the Charnock parameter tends to be stronger in the area where the waves are higher.
Generally an increase in the Charnock parameter is observed in the northern and southern basin, while there is a net
decrease in <inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> near the Equator. There is also a strong seasonality in the Northern Hemisphere, with
a reduction in summer and a strong increase in winter. The differences between <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>
are very latitudinal with very few longitudinal variations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e11118"><bold>(a, c)</bold> Seasonal averages of significant wave height (in meters) for January–February–March (JFM, panel <bold>a</bold>)
and July–August–September (JAS, panel <bold>c</bold>).
<bold>(b, d)</bold> Seasonal average of the difference between the Charnock parameter as
computed by the wave model and the default value <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">ch</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.018</mml:mn></mml:mrow></mml:math></inline-formula> for JFM <bold>(b)</bold> and JAS <bold>(d)</bold>.</p></caption>
            <?xmltex \igopts{width=355.659449pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f03.png"/>

          </fig>

      <p id="d1e11162">To isolate the effect of the Charnock parameter we compare the results obtained
in the No_CPL and WS_CPL experiments. Those two experiments
show relatively similar sea surface temperature patterns, meaning that the modification
of the wind stress <inline-formula><mml:math id="M304" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> between those two cases is primarily
due to the use of different Charnock parameters and the inclusion of the wave-supported stress.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e11183"><bold>(a)</bold> Drag coefficient (<inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) as a function of the 10 m wind speed <inline-formula><mml:math id="M306" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> and
<bold>(b)</bold> wind stress norm <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula>  as a function of <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mi mathvariant="normal">atm</mml:mi></mml:msubsup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula>
(black curves represent the mean value, while the vertical bars represent the standard deviation).</p></caption>
            <?xmltex \igopts{width=355.659449pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f04.png"/>

          </fig>

      <p id="d1e11257">Figure <xref ref-type="fig" rid="Ch1.F4"/>a illustrates that the Charnock parameter mostly affects the drag
coefficient <inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and hence the surface wind stress, for large winds. The ocean–wave
coupling does not lead to appreciable differences in the drag coefficient <inline-formula><mml:math id="M310" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for wind
speeds lower than <inline-formula><mml:math id="M311" display="inline"><mml:mn mathvariant="normal">8</mml:mn></mml:math></inline-formula> m s<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. On the contrary, since large values of the
Charnock parameter are observed for large wind speeds, the coupling significantly
increases the drag (as well as its variance) at high winds. Figure <xref ref-type="fig" rid="Ch1.F4"/>b
shows how the wind stress is modified by this increase in the drag coefficient jointly
with the wave-supported stress, which tends to decrease the wind stress magnitude (Fig. <xref ref-type="fig" rid="Ch1.F5"/>).
At low wind speed the wind stress magnitude is not affected by the coupling with waves,
while for strong winds the increase in wind stress associated with the increased drag coefficient
is always larger than the decrease associated with the wave-supported stress. This latter effect
reduces the wind stress by no more than 2 %; for the characteristic scales of our study, this
correction is thus almost negligible. The wind stress changes due to the coupling with waves
seen in our simulations are very localized in time and space and it is thus difficult to conclude
on their overall effect on upper-ocean dynamics such as Ekman pumping and the surface currents.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e11310">Wind stress difference <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">oce</mml:mi></mml:msup><mml:mo>‖</mml:mo><mml:mo>-</mml:mo><mml:mo>‖</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">τ</mml:mi><mml:mi mathvariant="normal">atm</mml:mi></mml:msup><mml:mo>‖</mml:mo></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:mi mathvariant="normal">N</mml:mi><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) due to the
correction made for growing waves for the WS_CPL experiment as a function of the 10 m wind speed.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f05.png"/>

          </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S4.SS2.SSS2">
  <label>4.2.2</label><title>Wave impact on surface TKE injection</title>
      <p id="d1e11372">As described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>, in the ocean–wave coupled case, the surface boundary
condition for the TKE equation is a Neumann condition whose value is directly given by the wave model,
unlike the uncoupled case in which a Dirichlet condition is imposed. We aim here to assess the impact
on the order of magnitude of the near-surface TKE.
Since the Neumann boundary condition is applied at the center of the topmost grid box
(i.e., approximately at <inline-formula><mml:math id="M315" display="inline"><mml:mn mathvariant="normal">50</mml:mn></mml:math></inline-formula> cm of depth), we compare in Fig. <xref ref-type="fig" rid="Ch1.F6"/> the TKE value
at 1 m of depth between the coupled (All_CPL2) and the uncoupled (No_CPL) case.
Positive values mean that near-surface TKE is larger in the coupled simulation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e11388">Seasonal difference of 1 m depth turbulent kinetic energy (m<inline-formula><mml:math id="M316" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M317" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)
between the coupled case (All_CPL2) and the uncoupled case (No_CPL).
<bold>(a)</bold> January, February, and March (JFM); <bold>(b)</bold> July, August, and September (JAS). </p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f06.png"/>

          </fig>

      <p id="d1e11424">It shows an almost homogeneous increase in the TKE (up to more than 100 %) in the extratropical areas.
While low seasonal variability in the extratropical areas is visible in Fig. <xref ref-type="fig" rid="Ch1.F6"/>, a spatial averaging by
hemisphere (Fig. <xref ref-type="fig" rid="Ch1.F7"/>) highlights seasonal variability with a strong increase in both the near-surface TKE value and
the TKE difference between the two experiments during winter.
In Figs. <xref ref-type="fig" rid="Ch1.F6"/> and <xref ref-type="fig" rid="Ch1.F7"/> (and also in the remainder of the paper), the spatial averaging is made between
<inline-formula><mml:math id="M318" display="inline"><mml:mn mathvariant="normal">25</mml:mn></mml:math></inline-formula> and <inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:mn mathvariant="normal">60</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> S in the Southern Hemisphere and between <inline-formula><mml:math id="M320" display="inline"><mml:mn mathvariant="normal">25</mml:mn></mml:math></inline-formula> and <inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:mn mathvariant="normal">60</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> N
in the Northern Hemisphere
to avoid any conflicts with sea ice and to remove the equatorial region from the comparison.
The increase in the surface TKE injection associated with waves is expected to contribute to
an overall increase in mixed layer depth provided that the mixing length diagnosed by the
turbulent closure scheme allows for the effective propagation of this additional TKE deeper in the mixed layer.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e11477">Spatially averaged turbulent kinetic energy (m<inline-formula><mml:math id="M322" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M323" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) at 1 m of depth
over <bold>(a)</bold> the Southern Hemisphere and <bold>(b)</bold> the Northern Hemisphere.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f07.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS3">
  <label>4.2.3</label><title>Wave impact on mixed layer depth</title>
      <p id="d1e11521">In this section, we evaluate the wave effect on vertical mixing using the mixed layer depth (MLD)
as a relevant metric.
Figure <xref ref-type="fig" rid="Ch1.F8"/> represents the seasonally averaged difference in MLD
between the coupled (<inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:mi mathvariant="normal">All</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">CPL</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>) and the uncoupled (<inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:mi mathvariant="normal">No</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">CPL</mml:mi></mml:mrow></mml:math></inline-formula>) case
relative to the No_CPL case (i.e., <inline-formula><mml:math id="M326" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msubsup><mml:mi>h</mml:mi><mml:mi mathvariant="normal">MLD</mml:mi><mml:mi mathvariant="normal">noCPL</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msubsup><mml:mi>h</mml:mi><mml:mi mathvariant="normal">MLD</mml:mi><mml:mi mathvariant="normal">CPL</mml:mi></mml:msubsup><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:msubsup><mml:mi>h</mml:mi><mml:mi mathvariant="normal">MLD</mml:mi><mml:mi mathvariant="normal">noCPL</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>
with <inline-formula><mml:math id="M327" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mi mathvariant="normal">MLD</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> considered negative downward). It shows a significant deepening of the mixed layer
at high latitudes in the coupled case with only a very few localized mixed layer shallowing up to 60 %, mainly in the Southern
Hemisphere.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e11600"><bold>(a, b)</bold> Seasonally averaged MLD differences (<inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:mi mathvariant="normal">All</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">CPL</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>-No_CPL) relative to the uncoupled simulation No_CPL. Red corresponds to a deeper MLD for <inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mi mathvariant="normal">All</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">CPL</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f08.png"/>

          </fig>

      <p id="d1e11639">To assess whether the overall deepening of the mixed layer is realistic, we make a comparison with available observations. Available observations for 2014 were extracted following an updated dataset from <xref ref-type="bibr" rid="bib1.bibx33" id="text.91"/>. The MLD has been computed as the depth at which the density is 3 % smaller that the density at 10 m as in <xref ref-type="bibr" rid="bib1.bibx33" id="text.92"/>.
Figure <xref ref-type="fig" rid="Ch1.F9"/> represents the spatially averaged MLD; the blue line is the spatially averaged MLD obtained from
ARGO floats (available during the same period) in both hemispheres. In the Northern Hemisphere (Fig. <xref ref-type="fig" rid="Ch1.F9"/>a),
there is only a slight improvement compared to data<?pagebreak page3078?> during winter and late summer when implementing the coupling
with waves. In the Southern Hemisphere (Fig. <xref ref-type="fig" rid="Ch1.F9"/>b) the situation is rather different.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e11657">Spatially averaged MLD for <bold>(a)</bold> the Northern Hemisphere and <bold>(b)</bold> the Southern Hemisphere.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f09.png"/>

          </fig>

      <p id="d1e11672">From January to July, the deepening of the MLD induced by the wave coupling significantly reduces the bias
between the model and ARGO data. From July to December, results in the coupled case show an overestimation
of MLDs, which were already too deep in the uncoupled case, thereby increasing the bias between the data and model.
Since mesoscale activity makes direct comparisons to data unreliable for such a short period of time,
we compare the normalized distribution of MLD between the different simulations and available ARGO data.
Results are presented in Fig. <xref ref-type="fig" rid="Ch1.F10"/> for the year 2014 (panel a) and during summer only (panel b). In both cases
the improvement in the Northern Hemisphere is very modest. As far as the Southern Hemisphere is concerned the
coupling with waves leads to a significant improvement compared to the MLD derived from ARGO floats despite the fact
that there are still too many low MLD values in the range 50–100 m. In comparison with the uncoupled
case there is a more realistic spreading toward deeper mixed layer depths. More particularly in summer (Fig. <xref ref-type="fig" rid="Ch1.F10"/>b),
the probability density function (PDF) in the coupled case matches the one computed from ARGO data almost perfectly.
Despite the fact that we did not activate the ad hoc extra mixing induced by near-inertial waves <xref ref-type="bibr" rid="bib1.bibx71" id="paren.93"/>,
our implementation of the wave–ocean interaction leads to a significant deepening of the MLD in a realistic way.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e11684">Mixed layer depth probability density function for <bold>(a)</bold> the full 2014 year and <bold>(b)</bold> summer 2014.</p></caption>
            <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f10.png"/>

          </fig>

      <p id="d1e11699">To better understand which components of the wave–ocean coupling are responsible for this improvement,
the summer PDF in the Southern Hemisphere has been computed for each of the experiments described
in Table <xref ref-type="table" rid="Ch1.T2"/>. Results are shown in Fig. <xref ref-type="fig" rid="Ch1.F11"/>. First of all, it can be seen that all the wave–ocean
interactions described in previous sections lead to an improvement in terms of mixed layer depth distribution
compared to the uncoupled case. Indeed, the<?pagebreak page3079?> modification of the wind stress by the wave field introduced in
WS_CPL increases both surface currents and near-surface TKE values, resulting in a slight deepening
of the MLD. Adding the Stokes-drift-related terms in the primitive equations contributes only modestly to the
deepening of the MLD, while most of the improvement results from the modified TKE scheme, with some slight improvement when the Langmuir parameterization is activated. It is somewhat reassuring to see that the better agreement with ARGO data
is obtained when all components of the coupling are activated.   <?xmltex \hack{\break}?></p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e11709">Mixed layer depth probability density function in the Southern Hemisphere during summer months. The details of each experiment can be found in Table <xref ref-type="table" rid="Ch1.T2"/>.</p></caption>
            <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f11.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS4">
  <label>4.2.4</label><title>Wave impact on sea surface temperature</title>
      <p id="d1e11728">Since the near-surface mixing is strengthened by the coupling, we can expect an impact on sea surface temperature (SST).
Figure <xref ref-type="fig" rid="Ch1.F12"/> represents the time series of SST for each hemisphere. The Northern Hemisphere is characterized by a
warm bias during summer with a very slight improvement when coupling with waves.
In the Southern Hemisphere (Fig. <xref ref-type="fig" rid="Ch1.F12"/>b) the summer warm bias is reduced by half in the coupled simulation
and a slight warming occurs during the winter. While the summer surface cooling might be linked to the mixed layer deepening,
the winter warming might be rather linked to advection as observed by <xref ref-type="bibr" rid="bib1.bibx1" id="text.94"/> for the Baltic sea. It could also result from an increased heat content during summer, leading to higher SST during winter.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><?xmltex \currentcnt{12}?><label>Figure 12</label><caption><p id="d1e11740">Time series of the spatially averaged sea surface temperature (<inline-formula><mml:math id="M330" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C); <bold>(a)</bold> Northern Hemisphere and <bold>(b)</bold> Southern Hemisphere. </p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f12.png"/>

          </fig>

      <p id="d1e11764">To better characterize the wave impact on the SST, we show in Fig. <xref ref-type="fig" rid="Ch1.F13"/>a
the difference in terms of annual mean between the No_CPL experiment and OSTIA<?pagebreak page3080?> analysis,
exhibiting a cold bias in the No_CPL simulation in equatorial and tropical regions and a warm bias in
the northern part of the Pacific Ocean. The coupling with
waves tends to diminish the cold bias  (see Fig. <xref ref-type="fig" rid="Ch1.F13"/>b), especially in the Pacific Ocean, and
the warm bias in the North Pacific is significantly reduced.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><?xmltex \currentcnt{13}?><label>Figure 13</label><caption><p id="d1e11774"><bold>(a)</bold> Annual average of the differences between No_CPL and OSTIA sea surface temperatures (<inline-formula><mml:math id="M331" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)
for the year 2014 (positive when the model is warmer).
<bold>(b)</bold> Annual average of the difference between All_CPL2 and No_CPL (positive when All_CPL2 is warmer).</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f13.png"/>

          </fig>

      <p id="d1e11797">As already noticed by <xref ref-type="bibr" rid="bib1.bibx50" id="text.95"/> the warming in the equatorial and tropical regions mainly results
from a lower wind stress caused by a value of the Charnock parameter lower than the value used in the
uncoupled case (see Fig. <xref ref-type="fig" rid="Ch1.F3"/>b, d). A consequence is a decrease in the drag coefficient, leading to
smaller turbulent exchange coefficients and reducing the heat flux.
As mentioned above, in extratropical regions, some warm bias tends to be partially reduced by the extra
mixing induced by the waves at high latitude and/or by the increased turbulent transfer coefficient.
The tendency of the wave coupling to improve the near-surface temperature distribution can also be verified
on a time–latitude Hovmöller diagram like the ones shown in Fig. <xref ref-type="fig" rid="Ch1.F14"/>. For instance, it can be seen that
the summer warm bias in the Northern Hemisphere (Fig. <xref ref-type="fig" rid="Ch1.F14"/>a) coincides well with the cooling induced
by the coupling with waves (Fig. <xref ref-type="fig" rid="Ch1.F14"/>b). Similarly we can also observe a warming in the tropical and equatorial
regions (Fig. <xref ref-type="fig" rid="Ch1.F14"/>b) corresponding to the cold bias seen in Fig. <xref ref-type="fig" rid="Ch1.F14"/>a. In the southern
extratropical region, a summer cooling is observed. It is induced by the wave coupling, whereas
Fig. <xref ref-type="fig" rid="Ch1.F14"/>a shows a slight warm bias. During winter we can observe a
warming in Fig. <xref ref-type="fig" rid="Ch1.F14"/>b north of 60<inline-formula><mml:math id="M332" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, which again partially corresponds to a cold bias in Fig. <xref ref-type="fig" rid="Ch1.F14"/>a.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14"><?xmltex \currentcnt{14}?><label>Figure 14</label><caption><p id="d1e11833">Hovmöller diagram of the longitudinally averaged sea surface temperature (<inline-formula><mml:math id="M333" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) differences between <bold>(a)</bold> No_CPL and OSTIA and <bold>(b)</bold> between All_CPL2 and No_CPL. </p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f14.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15" specific-use="star"><?xmltex \currentcnt{15}?><label>Figure 15</label><caption><p id="d1e11859">Time series of the spatially averaged surface kinetic energy (m<inline-formula><mml:math id="M334" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M335" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for <bold>(a)</bold> the Northern Hemisphere and <bold>(b)</bold> the Southern Hemisphere.</p></caption>
            <?xmltex \igopts{width=355.659449pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f15.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS2.SSS5">
  <label>4.2.5</label><title>Surface current and kinetic energy</title>
      <p id="d1e11904">The last aspect of our solutions we would like to evaluate is the impact of the surface waves
on surface currents and kinetic energy (KE). To do so, we show in Fig. <xref ref-type="fig" rid="Ch1.F15"/> time series of
the spatially averaged surface kinetic energy for both hemispheres. Whatever the hemisphere
there is a net decrease in surface KE (up to 20 % in the south) when a coupling with<?pagebreak page3081?> the waves
is included. This decrease in surface kinetic energy reflects a decrease in surface current magnitudes.
Indeed, as detailed in Fig. <xref ref-type="fig" rid="Ch1.F16"/>, which represents the vertical profile of the horizontal components
of the current in the oceanic surface boundary layer, the coupling with waves decreases both the surface
current magnitudes and the shear.
While currents from the WS_CPL are increased  due to increased wind stress, the Stokes–Coriolis force
when included in momentum equations leads to a decrease in velocities in the whole boundary layer as
previously shown by <xref ref-type="bibr" rid="bib1.bibx67" id="text.96"/> (orange lines in Fig. <xref ref-type="fig" rid="Ch1.F16"/>). The inclusion of vertical mixing
due to waves and Langmuir circulation attenuates the currents in the surface layer, resulting in further reduced
surface currents and stronger currents at the bottom of the boundary layer (purple lines in Fig. <xref ref-type="fig" rid="Ch1.F16"/>).
This concludes our checking of the proper functioning of the coupling with waves as described in the present
paper.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16" specific-use="star"><?xmltex \currentcnt{16}?><label>Figure 16</label><caption><p id="d1e11920">Zonally averaged zonal <bold>(a)</bold> and meridional <bold>(b)</bold> currents (m s<inline-formula><mml:math id="M336" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) between <inline-formula><mml:math id="M337" display="inline"><mml:mn mathvariant="normal">60</mml:mn></mml:math></inline-formula> and 25<inline-formula><mml:math id="M338" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S
as a function of depth (m) for the simulations described in Table <xref ref-type="table" rid="Ch1.T2"/>.</p></caption>
            <?xmltex \igopts{width=355.659449pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f16.png"/>

          </fig>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e11979">In this paper we have described the implementation of an online coupling between the oceanic
model NEMO and the wave model WW3. The impact of such coupling
on the model solutions has been assessed from the oceanic point of view for a global configuration.
In particular, the following steps to set up the coupled model have been discussed in detail:
(i) the inclusion of all wave-induced terms in NEMO primitive equations, only
neglecting the terms relevant for the surf zone, which is outside the scope of the NEMO community;
(ii) modification of the subgrid-scale vertical physics (including the bulk formulation) to
include wave effects and a parameterization of Langmuir turbulence; (iii) development of a
coupling interface based on the OASIS-MCT<?pagebreak page3082?> software for the exchange of data between
the two models; and (iv) tests of our developments on a realistic global configuration
at <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:msup><mml:mn mathvariant="normal">4</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> for the ocean coupled to a <inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:msup><mml:mn mathvariant="normal">2</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> resolution wave model. Compared to an
ocean-only simulation, the coupling with a wave model (with a resolution twice as coarse as the oceanic
model) leads to an additional computational cost of about 20 %.</p>
      <p id="d1e12012">Following  <xref ref-type="bibr" rid="bib1.bibx58" id="text.97"/> and <xref ref-type="bibr" rid="bib1.bibx6" id="text.98"/>, in the weak vertical current shear limit,
the wave-induced terms implemented in NEMO include the Stokes–Coriolis force,
the vortex force, Stokes advection in tracer and continuity equations, and a wave-induced
surface pressure term. The prognostic equation for TKE also includes an additional forcing
term associated with the Stokes drift vertical shear and various modifications of its boundary
condition described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>.</p>
      <p id="d1e12023">The development of a coupling infrastructure based on OASIS-MCT has several advantages
as it allows for an efficient data exchange (including the treatment of nonconformities between the
computational grids)  but also for versatility in the inclusion of a wave model in existing ocean–atmosphere
or ocean-only models. At a practical level, the OASIS interface we have implemented in
NEMO is similar to other  interfaces (e.g., toward atmospheric models) existing in the code,
which is important for maintenance and for further developments. It paves the way for a seamless and
more systematic inclusion of the coupling with waves for NEMO users.<?xmltex \hack{\break}?> Unlike most previous studies of wave–ocean coupling using NEMO, we have shown that satisfactory
results can be obtained from the TKE vertical turbulent closure scheme without activating the ad hoc
parameterization for the mixing induced by near-inertial waves, surface waves, and swell (known as the ETAU parameterization).
This parameterization that allows users to empirically propagate the surface TKE at depth using a prescribed shape function
is a pragmatic way to cure the shallow mixed layer depths in the Southern Ocean found in simulations ignoring wave effects.
Previous studies of wave–ocean coupling by <xref ref-type="bibr" rid="bib1.bibx21" id="text.99"/>,  <xref ref-type="bibr" rid="bib1.bibx1" id="text.100"/>, and <xref ref-type="bibr" rid="bib1.bibx75" id="text.101"/> have used the
ETAU parameterization in their setup. However, as suggested by <xref ref-type="bibr" rid="bib1.bibx21" id="text.102"/>, we can speculate that such a parameterization
could mask the impact of the wave coupling even though it turned out to be necessary to obtain realistic mixed layer depths.
We believe that our modification of the standard NEMO one-equation TKE scheme described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>
is more physically justifiable than the ETAU parameterization and requires much less parameter tuning.</p>
      <p id="d1e12043">The numerical experiments based on the ORCA25 configuration discussed in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2"/> were
meant to check that our developments were having the expected impact on numerical<?pagebreak page3083?> solutions. First, we confirmed
that using the Charnock parameter computed in the wave model instead of a constant value globally increases
the wind stress magnitude, particularly at middle and high latitudes, whereas accounting for the portion of the wind stress
consumed by the waves has a small impact (in our experiments it leads to a maximum 2 % decrease in the wind stress).
Second, using the mixed layer depth as an indicator to assess the amount of vertical mixing, the modifications brought
to the NEMO turbulence scheme (i.e., the new boundary condition for TKE and for the mixing length, the
addition of the Stokes shear in the TKE equation, and the modified <xref ref-type="bibr" rid="bib1.bibx12" id="text.103"/> parameterization for Langmuir cells)
lead to an important extra mixing contributing to a deepening of the surface mixed layer, particularly in the Southern
Hemisphere. When compared to ARGO data it shows a significant improvement during the summer, while during the winter
the extra wave-induced mixing deepens the already too deep mixed layer. Note that the <xref ref-type="bibr" rid="bib1.bibx38" id="text.104"/> parameterization
to account for the restratification induced by mixed layer instabilities <xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx28" id="paren.105"/> during the winter
was not used in our experiments. This parameterization induces even more shallow summer mixed layer depths.
As far as the Northern Hemisphere is concerned, coupled results show an improvement when compared to ARGO
for winter with a deepening of the mixed layer, while in summer results are similar to the uncoupled case.
Since the comparison with ARGO data can be tricky due to the scarcity of data, we looked at the results
in terms of mixed layer depth (MLD) probability density functions. This allowed us to highlight the significant
improvement in MLD distribution when coupling with the waves. Furthermore, we noticed that all components
of the ocean–wave coupling act to deepen the mixed layer and therefore have a cumulative effect. However, the
main contributor is the fully modified TKE scheme including the Langmuir cell parameterization of <xref ref-type="bibr" rid="bib1.bibx12" id="text.106"/>, which is consistent with recent
results obtained by <xref ref-type="bibr" rid="bib1.bibx69" id="text.107"/> and <xref ref-type="bibr" rid="bib1.bibx2" id="text.108"/> using a K-profile parameterization (KPP) closure scheme.</p>
      <?pagebreak page3084?><p id="d1e12068">Since the magnitude of the vertical mixing is increased by the coupling with waves we expect an impact on
sea surface temperature and currents. Indeed, the summer deepening of the mixed layer in the Southern
Hemisphere leads to colder sea surface temperatures, resulting in better agreement with the OSTIA SST analysis.
More generally, although the global SST biases are not totally compensated for, they tend to be reduced when
considering the effect of waves (see Sect. <xref ref-type="sec" rid="Ch1.S4.SS2.SSS4"/>). The currents in the oceanic surface boundary layer
are reduced by the Stokes–Coriolis force <xref ref-type="bibr" rid="bib1.bibx67" id="paren.109"><named-content content-type="pre">which counteracts the Ekman current;</named-content></xref>. They are
also affected by the increased vertical mixing, which tends to reduce the surface currents (and thus the surface kinetic energy)
and strengthen the currents at the base of the surface boundary layer. The reduction of surface kinetic energy due
to the wave–ocean coupling in the global <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:msup><mml:mn mathvariant="normal">4</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> resolution configuration is of the same order of magnitude
as the reduction observed when accounting for surface currents in the computation of the wind stress in a coupled
ocean–atmosphere model <xref ref-type="bibr" rid="bib1.bibx70" id="paren.110"><named-content content-type="pre">e.g.,</named-content></xref>. A fully coupled ocean–wave–atmosphere model would thus be
necessary to properly disentangle the different contributions at play impacting the oceanic surface kinetic energy.
Even if additional diagnostics on various configurations at different resolutions are still needed to exhaustively
evaluate the impact of each component of the ocean wave coupling, the results presented in the paper confirm
the robustness of our developments, and our implementation will serve as a starting point for the inclusion of
wave–current interactions in the forthcoming NEMO official release.
We can speculate that the ocean–wave coupled ORCA025 configuration might become a standard component
of future Coupled Model Intercomparison Project (CMIP) exercises.
We already mentioned as a perspective the addition of a coupling with an  interactive atmospheric boundary layer
either via a full atmospheric model or a simplified boundary layer model <xref ref-type="bibr" rid="bib1.bibx52" id="paren.111"><named-content content-type="pre">e.g.,</named-content></xref>.
Furthermore, the gain of an online two-way coupling compared to a one-way coupling on the oceanic and
wave solution must be investigated in the future.
Indeed, the improvements of the quality of surface wave simulations associated with a coupling with large-scale oceanic currents
are well documented, particularly in the Agulhas current <xref ref-type="bibr" rid="bib1.bibx43" id="paren.112"/> and in the Gulf Stream <xref ref-type="bibr" rid="bib1.bibx57" id="paren.113"/>.
<xref ref-type="bibr" rid="bib1.bibx10" id="text.114"/> have also shown a strong impact of small-scale currents (10–100 km) on wave height variability at the same scales.
We can therefore expect improvements for both wave and ocean forecasts when the coupling is implemented in an operational context.</p><?xmltex \hack{\clearpage}?>
</sec>

      
      </body>
    <back><app-group>

<?pagebreak page3085?><app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Flux-form wave-averaged momentum equations</title>
      <p id="d1e12125">In this Appendix we describe the necessary changes  when a flux formulation for advective terms
in the momentum equations is preferred to the vector-invariant form presented in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E7"/>)
and (<xref ref-type="disp-formula" rid="Ch1.E8"/>). For simplicity, we consider just the <inline-formula><mml:math id="M342" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> component in horizontal curvilinear
coordinates and the <inline-formula><mml:math id="M343" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> coordinate in the vertical (results will be extended to the <inline-formula><mml:math id="M344" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> component and to a
generalized vertical coordinate). Consistently with the notations of <xref ref-type="bibr" rid="bib1.bibx56" id="text.115"/>, <inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are the horizontal scale factors.
We denote <inline-formula><mml:math id="M347" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">A</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi>u</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> the extra term needed to guarantee  equivalence between the flux formulation and the vector-invariant form.
<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">A</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi>u</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is defined such that
          <disp-formula id="App1.Ch1.S1.Ex1"><mml:math id="M349" display="block"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msubsup><mml:mi mathvariant="normal">A</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi>u</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ζ</mml:mi><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Since <inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, we have <inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>u</mml:mi></mml:mrow></mml:math></inline-formula> and thus
          <disp-formula id="App1.Ch1.S1.E24" content-type="numbered"><label>A1</label><mml:math id="M352" display="block"><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msubsup><mml:mi mathvariant="normal">A</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi>u</mml:mi></mml:msubsup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi>v</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mi>u</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msup><mml:mi>u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mfenced close="]" open="["><mml:mrow><mml:mi>v</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi>u</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>v</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msup><mml:mi>u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
        Hence,
          <disp-formula id="App1.Ch1.S1.Ex2"><mml:math id="M353" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">A</mml:mi><mml:mi mathvariant="normal">v</mml:mi><mml:mi>u</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:munder><mml:munder class="underbrace"><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mi>v</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi>u</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mo mathvariant="normal">︸</mml:mo></mml:munder><mml:mtext>Metric term on Stokes drift</mml:mtext></mml:munder><mml:mo>-</mml:mo><mml:munder><mml:munder class="underbrace"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mo mathvariant="normal">︸</mml:mo></mml:munder><mml:mtext>Additional term</mml:mtext></mml:munder><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        The same computation for the <inline-formula><mml:math id="M354" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> component leads to the following equations in generalized vertical coordinates.
          <disp-formula id="App1.Ch1.S1.Ex3"><mml:math id="M355" display="block"><mml:mtable columnspacing="1em" rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close="]" open="["><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mi>u</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mi>f</mml:mi><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mi>v</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi>u</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi>u</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>F</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>u</mml:mi></mml:msup><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi>v</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mi>v</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mi>v</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ω</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mi>v</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mi>f</mml:mi><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mi>v</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi>u</mml:mi><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mi>u</mml:mi></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi>v</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">s</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mi>v</mml:mi></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo stretchy="true" mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>J</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:mfenced open="〈" close="〉"><mml:mrow><mml:msup><mml:mi>v</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mi>v</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mover accent="true"><mml:mi>F</mml:mi><mml:mo mathvariant="normal" stretchy="true">̃</mml:mo></mml:mover><mml:mi>v</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d1e13604">Here, <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mo>•</mml:mo></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mo>∂</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:mo>•</mml:mo></mml:mrow></mml:mfenced><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are derivatives along the <inline-formula><mml:math id="M358" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> coordinate.</p><?xmltex \hack{\clearpage}?>
</app>

<?pagebreak page3086?><app id="App1.Ch1.S2">
  <?xmltex \currentcnt{B}?><label>Appendix B</label><?xmltex \opttitle{Sensitivity to the $c_{\mathrm{LC}}$ parameter from single-column experiments}?><title>Sensitivity to the <inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> parameter from single-column experiments</title>
      <p id="d1e13671">Single-column experiments based on <xref ref-type="bibr" rid="bib1.bibx62" id="text.116"/> have been performed to
study the behavior of the NEMO vertical closure with the Langmuir
cell parameterization of <xref ref-type="bibr" rid="bib1.bibx12" id="text.117"/>. In the  <xref ref-type="bibr" rid="bib1.bibx62" id="text.118"/> experiments
the initial condition is given by
          <disp-formula id="App1.Ch1.S2.Ex1"><mml:math id="M360" display="block"><mml:mrow><mml:mi>u</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>v</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mfenced open="{" close="}"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5.0</mml:mn><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mi>g</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        with <inline-formula><mml:math id="M361" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> the thermal expansion coefficient in the equation of state defined as
<inline-formula><mml:math id="M362" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>T</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1024</mml:mn></mml:mrow></mml:math></inline-formula> kg m<inline-formula><mml:math id="M364" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
A zonal wind is imposed with <inline-formula><mml:math id="M365" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mo>⋆</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> m s<inline-formula><mml:math id="M366" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
and the Stokes drift is given by
          <disp-formula id="App1.Ch1.S2.Ex2"><mml:math id="M367" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">u</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>u</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mspace width="1em" linebreak="nobreak"/><mml:msub><mml:mi>u</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">π</mml:mi><mml:mi>a</mml:mi></mml:mrow><mml:mi mathvariant="italic">λ</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msqrt><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>g</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">π</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:msqrt><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:mi mathvariant="italic">π</mml:mi><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        The various parameter values are
          <disp-formula id="App1.Ch1.S2.Ex3"><mml:math id="M368" display="block"><mml:mtable columnspacing="1em" rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi mathvariant="normal">cor</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="1em"/><mml:msub><mml:mi>h</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">120</mml:mn><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi mathvariant="normal">m</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="1em"/><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
        with <inline-formula><mml:math id="M369" display="inline"><mml:mn mathvariant="normal">96</mml:mn></mml:math></inline-formula> vertical levels for the discretization and <inline-formula><mml:math id="M370" display="inline"><mml:mn mathvariant="normal">16</mml:mn></mml:math></inline-formula> h simulations.
We only consider the case with  <inline-formula><mml:math id="M371" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> m and <inline-formula><mml:math id="M372" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">40</mml:mn><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, which gives a turbulent
Langmuir number of <inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:msub><mml:mi>a</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">0.32</mml:mn></mml:mrow></mml:math></inline-formula>.
Numerical results are shown in Fig. <xref ref-type="fig" rid="App1.Ch1.S2.F17"/> (upper panels) and are consistent with the results of <xref ref-type="bibr" rid="bib1.bibx62" id="text.119"/>
with a deepening of the oceanic mixing length of about 10 m when Langmuir turbulence
is accounted for (see LES results in Fig. 3 in <xref ref-type="bibr" rid="bib1.bibx62" id="altparen.120"/>). For  <inline-formula><mml:math id="M374" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.15</mml:mn></mml:mrow></mml:math></inline-formula> in the <xref ref-type="bibr" rid="bib1.bibx12" id="text.121"/> parameterization,
the deepening is too weak, while for <inline-formula><mml:math id="M375" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula> it is closer to the <xref ref-type="bibr" rid="bib1.bibx62" id="text.122"/> LES results.
Note that for those experiments, the value of <inline-formula><mml:math id="M376" display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">LC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is almost identical to the mixed
layer depth. Figure <xref ref-type="fig" rid="App1.Ch1.S2.F17"/> (lower panels) illustrates the fact that for a stronger
stratification (i.e., with <inline-formula><mml:math id="M377" display="inline"><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> s<inline-formula><mml:math id="M378" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
instead of <inline-formula><mml:math id="M379" display="inline"><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> s<inline-formula><mml:math id="M380" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) the effect of Langmuir turbulence on mixed layer depth is negligible.
Indeed, in this case Langmuir cells do not provide enough mixing to erode the stratification.
<?xmltex \hack{\newpage}?></p>

      <?xmltex \floatpos{th!}?><fig id="App1.Ch1.S2.F17"><?xmltex \currentcnt{B1}?><label>Figure B1</label><caption><p id="d1e14261">Solution obtained for the <xref ref-type="bibr" rid="bib1.bibx62" id="text.123"/> single-column experiment after 16 h for different parameter values in
the <xref ref-type="bibr" rid="bib1.bibx12" id="text.124"/> Langmuir cell parameterization in the case <inline-formula><mml:math id="M381" display="inline"><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> s<inline-formula><mml:math id="M382" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (upper panels) and <inline-formula><mml:math id="M383" display="inline"><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> s<inline-formula><mml:math id="M384" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (lower panels).</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/3067/2020/gmd-13-3067-2020-f17.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e14357">The changes to the NEMO code have been made on the standard NEMO
code (nemo_v3_6_STABLE). The code can be downloaded
from the NEMO website (<uri>http://www.nemo-ocean.eu/</uri>, last access: 11 July 2019, <xref ref-type="bibr" rid="bib1.bibx56" id="altparen.125"/>).
The NEMO code modified to include wave–ocean coupling terms and the OASIS interface
is available in the Zenodo archive (<ext-link xlink:href="https://doi.org/10.5281/zenodo.3331463" ext-link-type="DOI">10.5281/zenodo.3331463</ext-link>, <xref ref-type="bibr" rid="bib1.bibx27" id="altparen.126"/>).
The WW3 code version 6.02 has been used without further modifications
and can be downloaded from the NOAA GitHub repository (<uri>https://github.com/NOAA-EMC/WW3</uri>, last access: 11 July 2019, <xref ref-type="bibr" rid="bib1.bibx84" id="altparen.127"/>).
Our modifications of the OASIS interface in the WW3 code have already been
integrated in the official release. The OASIS3_MCT code is also freely available
(<uri>https://portal.enes.org/oasis/</uri>, last access: 11 July 2019, <xref ref-type="bibr" rid="bib1.bibx82 bib1.bibx29" id="altparen.128"/>).
The exact versions of the WW3 and OASIS3_MCT codes that were used
have also been made available in the Zenodo archive (<ext-link xlink:href="https://doi.org/10.5281/zenodo.3331463" ext-link-type="DOI">10.5281/zenodo.3331463</ext-link>, <xref ref-type="bibr" rid="bib1.bibx27" id="altparen.129"/>)
The initial and forcing data for both the oceanic and wave model, analysis scripts,
namelists, and the data used to produce the figures are also available in the Zenodo archive.</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e14394">XC prepared and carried out all the numerical experiments,
investigated the results, and wrote the paper with the help of all the coauthors.
GM, FL, RB, and XC made the changes in the
NEMO code to include the wave–ocean interactions.  GS helped to
prepare the necessary datasets for the numerical experiments and analyze the model outputs. FA and JR helped to investigate the results and to formalize the
necessary wave-induced terms in both the primitive equations and the TKE closure.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e14400">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e14406">We thank George Nurser and Oyvind Breivik, whose efforts helped to improve earlier versions of this paper, as well as Qiang Wang and Svenja Langer.
We also thank Knut Klingbeil, Patrick Marchesiello, and Patrick Marsaleix for useful discussions.
Xavier Couvelard, Florian Lemarié, and Jean-Luc Redelsperger
acknowledge support by Mercator-Ocean and the Copernicus Marine
Environment Monitoring Service (CMEMS) through contract
22-GLO-HR – Lot 2 (High-resolution ocean, waves, atmosphere interaction).
Numerical simulations were performed on Ifremer HPC facilities DATARMOR of
“P<inline-formula><mml:math id="M385" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>le de Calcul Intensif pour la Mer” (PCIM) (<uri>http://www.ifremer.fr/pcim</uri>, last access: 2 July 2020).
Mixed layer depth data were graciously provided by Clément de Boyer Montégut,
and SST data were downloaded from the CMEMS catalog. The authors also gratefully
thank Claude Talandier for help with NEMO, Mickaël Accensi for help with
WW3, and Eric Maisonnave and Laure Coquart for their help with OASIS3_MCT.</p></ack><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e14423">This paper was edited by Qiang Wang and reviewed by A. J. George Nurser and Oyvind Breivik.</p>
  </notes><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Alari et al.(2016)</label><?label alari16?><mixed-citation>Alari, V., Staneva, J., Breivik, Ø., Bidlot, J.-R., Mogensen, K., and
Janssen, P.: Surface wave effects on water temperature in the Baltic Sea:
simulation with the coupled NEMO-WAM model, Ocean Dynam., 66, 917–930,
<ext-link xlink:href="https://doi.org/10.1007/s10236-016-0963-x" ext-link-type="DOI">10.1007/s10236-016-0963-x</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Ali et al.(2019)</label><?label ALI2019?><mixed-citation>Ali, A., Christensen, K. H., Øyvind Breivik, Malila, M., Raj, R. P., Bertino,
L., Chassignet, E. P., and Bakhoday-Paskyabi, M.: A comparison of Langmuir
turbulence parameterizations and key wave effects in a numerical model of the
North Atlantic and Arctic Oceans, Ocean Model., 137,
76–97,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2019.02.005" ext-link-type="DOI">10.1016/j.ocemod.2019.02.005</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Arakawa and Lamb(1981)</label><?label Arakawa81?><mixed-citation>Arakawa, A. and Lamb, V. R.: A Potential Enstrophy and Energy Conserving Scheme
for the Shallow Water Equations, Mon. Weather Rev., 109, 18–36,
<ext-link xlink:href="https://doi.org/10.1175/1520-0493(1981)109&lt;0018:APEAEC&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0493(1981)109&lt;0018:APEAEC&gt;2.0.CO;2</ext-link>, 1981.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Ardhuin and Jenkins(2006)</label><?label Ardhuin&Jenkins2006?><mixed-citation>Ardhuin, F. and Jenkins, A. D.: On the interaction of surface waves and upper
ocean turbulence, J. Phys. Oceanogr., 36, 551–557,
<ext-link xlink:href="https://doi.org/10.1175/JPO2862.1" ext-link-type="DOI">10.1175/JPO2862.1</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Ardhuin et al.(2007)</label><?label ardhuin07?><mixed-citation>Ardhuin, F., Herbers, T. H. C., Watts, K. P., van Vledder, G. P., Jensen, R.,
and Graber, H. C.: Swell and Slanting-Fetch Effects on Wind Wave Growth, J.
Phys. Oceanogr., 37, 908–931, <ext-link xlink:href="https://doi.org/10.1175/JPO3039.1" ext-link-type="DOI">10.1175/JPO3039.1</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Ardhuin et al.(2008)</label><?label ardhuin08?><mixed-citation>Ardhuin, F., Rascle, N., and Belibassakis, K.: Explicit wave-averaged primitive
equations using a generalized Lagrangian mean, Ocean Model., 20, 35–60,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2007.07.001" ext-link-type="DOI">10.1016/j.ocemod.2007.07.001</ext-link>,
2008.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Ardhuin et al.(2009)</label><?label Ardhuin&al.2009?><mixed-citation>Ardhuin, F., Marié, L., Rascle, N., Forget, P., and Roland, A.: Observation
and estimation of Lagrangian, Stokes and Eulerian currents induced by wind
and waves at the sea surface, J. Phys. Oceanogr., 39, 2820–2838,
<ext-link xlink:href="https://doi.org/10.1175/2009JPO4169.1" ext-link-type="DOI">10.1175/2009JPO4169.1</ext-link>,
2009.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Ardhuin et al.(2010a)</label><?label Ardhuin&al.2010?><mixed-citation>Ardhuin, F., Rogers, E., Babanin, A., Filipot, J.-F., Magne, R., Roland, A.,
van der Westhuysen, A., Queffeulou, P., Lefevre, J.-M., Aouf, L., and
Collard, F.: Semi-empirical dissipation source functions for wind-wave
models: part I, definition, calibration and validation, J. Phys. Oceanogr.,
40, 1917–1941, <ext-link xlink:href="https://doi.org/10.1175/2010JPO4324.1" ext-link-type="DOI">10.1175/2010JPO4324.1</ext-link>, 2010a.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Ardhuin et al.(2010b)</label><?label ardhuin2010?><mixed-citation>Ardhuin, F., Rogers, E., Babanin, A. V., Filipot, J.-F., Magne, R., Roland, A.,
van der Westhuysen, A., Queffeulou, P., Lefevre, J.-M., Aouf, L., and
Collard, F.: Semiempirical Dissipation Source Functions for Ocean Waves. Part
I: Definition, Calibration, and Validation, J. Phys. Oceanogr., 40,
1917–1941, <ext-link xlink:href="https://doi.org/10.1175/2010JPO4324.1" ext-link-type="DOI">10.1175/2010JPO4324.1</ext-link>, 2010b.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Ardhuin et al.(2017a)</label><?label ardhuin17a?><mixed-citation>Ardhuin, F., Rascle, N., Chapron, B., Gula, J., Molemaker, J., Gille, S. T.,
Menemenlis, D., and Rocha, C.: Small scale currents have large effects on
wind wave heights, J. Geophys. Res., 122, 4500–4517,
<ext-link xlink:href="https://doi.org/10.1002/2016JC012413" ext-link-type="DOI">10.1002/2016JC012413</ext-link>, 2017a.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Ardhuin et al.(2017b)</label><?label ardhuin17?><mixed-citation>Ardhuin, F., Suzuki, N., McWilliams, J. C., and Aiki, H.: Comments on “A
Combined Derivation of the Integrated and Vertically Resolved, Coupled
Wave–Current Equations”, J. Phys. Oceanogr., 47, 2377–2385,
<ext-link xlink:href="https://doi.org/10.1175/JPO-D-17-0065.1" ext-link-type="DOI">10.1175/JPO-D-17-0065.1</ext-link>, 2017b.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Axell(2002)</label><?label axell02?><mixed-citation>Axell, L. B.: Wind-driven internal waves and Langmuir circulations in a
numerical ocean model of the southern Baltic Sea, J. Geophys. Res., 107,
25–1–25–20, <ext-link xlink:href="https://doi.org/10.1029/2001JC000922" ext-link-type="DOI">10.1029/2001JC000922</ext-link>,
2002.</mixed-citation></ref>
      <?pagebreak page3088?><ref id="bib1.bibx13"><label>Banner and Morison(2010)</label><?label Banner10?><mixed-citation>Banner, M. L. and Morison, R. P.: Refined source terms in wind wave models with
explicit wave breaking prediction. Part I: Model framework and validation
against field data, Ocean Model., 33, 177–189,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2010.01.002" ext-link-type="DOI">10.1016/j.ocemod.2010.01.002</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Banner and Young(1994)</label><?label Banner94?><mixed-citation>Banner, M. L. and Young, I. R.: Modeling Spectral Dissipation in the Evolution
of Wind Waves. Part I: Assessment of Existing Model Performance, J. Phys.
Oceanogr., 24, 1550–1571,
<ext-link xlink:href="https://doi.org/10.1175/1520-0485(1994)024&lt;1550:MSDITE&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0485(1994)024&lt;1550:MSDITE&gt;2.0.CO;2</ext-link>, 1994.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Barnier et al.(2006)</label><?label Bernard06?><mixed-citation>Barnier, B., Madec, G., Penduff, T., Molines, J.-M., Treguier, A.-M., Le
Sommer, J., Beckmann, A., Biastoch, A., Böning, C., Dengg, J., Derval,
C., Durand, E., Gulev, S., Remy, E., Talandier, C., Theetten, S., Maltrud,
M., McClean, J., and De Cuevas, B.: Impact of partial steps and momentum
advection schemes in a global ocean circulation model at eddy-permitting
resolution, Ocean Dynam., 56, 543–567, <ext-link xlink:href="https://doi.org/10.1007/s10236-006-0082-1" ext-link-type="DOI">10.1007/s10236-006-0082-1</ext-link>,
2006.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Belcher et al.(2012)</label><?label Belcher2012?><mixed-citation>Belcher, S. E., Grant, A. L. M., Hanley, K. E., Fox-Kemper, B., Van Roekel, L.,
Sullivan, P. P., Large, W. G., Brown, A., Hines, A., Calvert, D., Rutgersson,
A., Pettersson, H., Bidlot, J.-R., Janssen, P. A. E. M., and Polton, J. A.: A
global perspective on Langmuir turbulence in the ocean surface boundary
layer, Geophys. Res. Lett., 39, L18605, <ext-link xlink:href="https://doi.org/10.1029/2012GL052932" ext-link-type="DOI">10.1029/2012GL052932</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Bennis et al.(2011)</label><?label bennis11?><mixed-citation>Bennis, A.-C., Ardhuin, F., and Dumas, F.: On the coupling of wave and
three-dimensional circulation models: Choice of theoretical framework,
practical implementation and adiabatic tests, Ocean Model., 40, 260–272, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2011.09.003" ext-link-type="DOI">10.1016/j.ocemod.2011.09.003</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Boccaletti et al.(2007)</label><?label boccaletti07?><mixed-citation>Boccaletti, G., Ferrari, R., and Fox-Kemper, B.: Mixed Layer Instabilities and
Restratification, J. Phys. Oceanogr., 37, 2228–2250,
<ext-link xlink:href="https://doi.org/10.1175/JPO3101.1" ext-link-type="DOI">10.1175/JPO3101.1</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Boutin et al.(2019)</label><?label Boutin_etal_2019?><mixed-citation>Boutin, G., Lique, C., Ardhuin, F., Accensi, M., Rousset, C., Talandier, C.,
and Girard-Ardhuin, F.: Coupling a spectral wave model with a coupled
ocean-ice model, Drakkar meeting, Grenoble, France, 21–23 January,
available at: <uri>http://pp.ige-grenoble.fr/pageperso/barnierb/WEBDRAKKAR2019/</uri> (last access: 2 July 2020), 2019.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Breivik et al.(2014)</label><?label breivik14?><mixed-citation>
Breivik, Ø., Janssen, P., and Bidlot, J.-R.: Approximate Stokes Drift
Profiles in Deep Water, J. Phys. Oceanogr., 44, 2433–2445, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Breivik et al.(2015)</label><?label breivik15?><mixed-citation>Breivik, Ø., Mogensen, K., Bidlot, J.-R., Balmaseda, M. A., and Janssen, P.:
Surface Wave Effects in the NEMO Ocean Model: Forced and Coupled
Experiments, J. Geophys. Res.-Oceans, 120, 2973–2992, <ext-link xlink:href="https://doi.org/10.1002/2014JC010565" ext-link-type="DOI">10.1002/2014JC010565</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Breivik et al.(2016)</label><?label Breivik16?><mixed-citation>Breivik, Ø., Bidlot, J.-R., and Janssen, P.: A Stokes drift approximation
based on the Phillips spectrum, Ocean Model., 100, 49–56,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2016.01.005" ext-link-type="DOI">10.1016/j.ocemod.2016.01.005</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Brodeau et al.(2016)</label><?label brodeau16?><mixed-citation>Brodeau, L., Barnier, B., Gulev, S. K., and Woods, C.: Climatologically
significant effects of some approximations in the bulk parameterizations of
turbulent air-sea fluxes, J. Phys. Oceanogr., 47, 5–28,
<ext-link xlink:href="https://doi.org/10.1175/JPO-D-16-0169.1" ext-link-type="DOI">10.1175/JPO-D-16-0169.1</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Charnock(1955)</label><?label Charnock_1955?><mixed-citation>Charnock, H.: Wind stress on a water surface, Q. J. Roy. Meteor. Soc.,
81, 639–640, <ext-link xlink:href="https://doi.org/10.1002/qj.49708135027" ext-link-type="DOI">10.1002/qj.49708135027</ext-link>,
1955.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Chen and Belcher(2000)</label><?label Chen2000?><mixed-citation>
Chen, G. and Belcher, S. E.: Effects of Long Waves on Wind-Generated Waves,
J. Phys. Oceanogr., 30, 2246–2256, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Chen and Curnic(2015)</label><?label Chen2015?><mixed-citation>Chen, S. and Curnic, M.: Ocean surface waves in Hurricane Ike (2008) and
Superstorm Sandy (2012): Coupled model predictions and observations,
Oceanogr. Meteorol., 103, 161–176, <ext-link xlink:href="https://doi.org/10.5670/oceanog.2010.05" ext-link-type="DOI">10.5670/oceanog.2010.05</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Couvelard(2019)</label><?label Couvelard_etal_2019?><mixed-citation>Couvelard, X.: ORCA025-WW3-Couvelard_etal_GMD,
<ext-link xlink:href="https://doi.org/10.5281/zenodo.3331463" ext-link-type="DOI">10.5281/zenodo.3331463</ext-link>,
2019.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Couvelard et al.(2015)</label><?label couvelard15?><mixed-citation>Couvelard, X., Dumas, F., Garnier, V., Ponte, A., Talandier, C., and Treguier,
A.: Mixed layer formation and restratification in presence of mesoscale and
submesoscale turbulence, Ocean Model., 96, 243–253,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2015.10.004" ext-link-type="DOI">10.1016/j.ocemod.2015.10.004</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Craig et al.(2017)Craig, Valcke, and Coquart</label><?label craig17?><mixed-citation>Craig, A., Valcke, S., and Coquart, L.: Development and performance of a new version of the OASIS coupler, OASIS3-MCT_3.0, Geosci. Model Dev., 10, 3297–3308, <ext-link xlink:href="https://doi.org/10.5194/gmd-10-3297-2017" ext-link-type="DOI">10.5194/gmd-10-3297-2017</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Craig and Banner(1994)</label><?label craig94?><mixed-citation>
Craig, P. D. and Banner, M. L.: Modeling Wave-Enhanced Turbulence in the Ocean
Surface Layer, J. Phys. Oceanogr., 24, 2546–2559, 1994.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>D'Asaro et al.(2014)</label><?label dAsaro2014?><mixed-citation>D'Asaro, E. A., Thomson, J., Shcherbina, A. Y., Harcourt, R. R., Cronin, M. F.,
Hemer, M. A., and Fox-Kemper, B.: Quantifying upper ocean turbulence driven
by surface waves, Geophys. Res. Lett., 41, 102–107,
<ext-link xlink:href="https://doi.org/10.1002/2013GL058193" ext-link-type="DOI">10.1002/2013GL058193</ext-link>,
2014.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Deardorff(1980)</label><?label Deardorff80?><mixed-citation>
Deardorff, J. W.: Stratocumulus-capped mixing layers derived from a
threedimensional model, Bound.-Lay. Meteorol., 18, 495–527, 1980.</mixed-citation></ref>
      <ref id="bib1.bibx33"><?xmltex \def\ref@label{{{de Boyer Mont{\'{e}}gut} et~al.(2004)}}?><label>de Boyer Montégut et al.(2004)</label><?label deboyer04?><mixed-citation>de Boyer Montégut, C., Madec, G., Fischer, A. S., Lazar, A., and
Iudicone, D.: Mixed layer depth over the global ocean: An examination of
profile data and a profile-based climatology, J. Geophys. Res., 109, C12003,
<ext-link xlink:href="https://doi.org/10.1029/2004JC002378" ext-link-type="DOI">10.1029/2004JC002378</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Dee et al.(2011)</label><?label dee11?><mixed-citation>Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P., Kobayashi,
S., Andrae, U., Balmaseda, M. A., Balsamo, G., Bauer, P., Bechtold, P.,
Beljaars, A. C. M., van de Berg, L., Bidlot, J., Bormann, N., Delsol, C.,
Dragani, R., Fuentes, M., Geer, A. J., Haimberger, L., Healy, S. B.,
Hersbach, H., Hólm, E. V., Isaksen, L., Kållberg, P., Köhler, M.,
Matricardi, M., McNally, A. P., Monge-Sanz, B. M., Morcrette, J.-J., Park,
B.-K., Peubey, C., de Rosnay, P., Tavolato, C., Thépaut, J.-N., and Vitart,
F.: The ERA-Interim reanalysis: configuration and performance of the data
assimilation system, Q. J. Roy. Meteor. Soc.,
137, 553–597, <ext-link xlink:href="https://doi.org/10.1002/qj.828" ext-link-type="DOI">10.1002/qj.828</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Ducousso et al.(2017)</label><?label Ducousso17?><mixed-citation>Ducousso, N., Le Sommer, J., Molines, J.-M., and Bell, M.: Impact of the
“ymmetric Instability of the Computational Kind” at mesoscale- and
submesoscale-permitting resolutions, Ocean Model., 120, 18–26,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2017.10.006" ext-link-type="DOI">10.1016/j.ocemod.2017.10.006</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Fairall et al.(2003)</label><?label fairall2003?><mixed-citation>Fairall, C. W., Bradley, E. F., Hare, J. E., Grachev, A. A., and Edson, J. B.:
Bulk Parameterization of Air–Sea Fluxes: Updates and Verification for the
COARE Algorithm, J. Climate, 16, 571–591,
<ext-link xlink:href="https://doi.org/10.1175/1520-0442(2003)016&lt;0571:BPOASF&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0442(2003)016&lt;0571:BPOASF&gt;2.0.CO;2</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Fan and Griffies(2014)</label><?label Fan_Griffies_2014?><mixed-citation>Fan, Y. and Griffies, S. M.: Impacts of Parameterized Langmuir Turbulence and
Nonbreaking Wave Mixing in Global Climate Simulations, J. Climate, 27,
4752–4775, <ext-link xlink:href="https://doi.org/10.1175/JCLI-D-13-00583.1" ext-link-type="DOI">10.1175/JCLI-D-13-00583.1</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Fox-Kemper et al.(2008)</label><?label foxkemper08?><mixed-citation>Fox-Kemper, B., Ferrari, R., and Hallberg, R.: Parameterization of Mixed Layer
Eddies. Part I: Theory and Diagnosis, J. Phys. Oceanogr., 38,
1145–1165, <ext-link xlink:href="https://doi.org/10.1175/2007JPO3792.1" ext-link-type="DOI">10.1175/2007JPO3792.1</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Hasselmann(1991)</label><?label Hasselmann91?><mixed-citation>Hasselmann, K.: Ocean circulation and climate change, Tellus B, 43, 82–103, <ext-link xlink:href="https://doi.org/10.3402/tellusb.v43i4.15399" ext-link-type="DOI">10.3402/tellusb.v43i4.15399</ext-link>,
1991.</mixed-citation></ref>
      <?pagebreak page3089?><ref id="bib1.bibx40"><label>Hasselmann et al.(1985)</label><?label hasselmann85?><mixed-citation>
Hasselmann, S., Hasselmann, K., Allender, H., and Barnet, T. P.:  Computations
and parameterizations of the nonlinear energy transfer in a gravity wave
spectrum. Part II. Parameterizations of the nonlinear energy transfer for
application in wave models , J. Phys. Oceanogr., 15, 1378–1391, 1985.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Hilburn(2009)</label><?label hilburn09?><mixed-citation>
Hilburn, K.: The passive microwave water cycle product, Remote Sensing Systems
(REMSS) Technical Report 072409, Santa Rosa (CA), 30 pp., Tech. rep., 2009.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Hwang(2015)</label><?label Hwang2016?><mixed-citation>
Hwang, P. A.: Fetch- and Duration-Limited Nature of Surface Wave Growth inside
Tropical Cyclones: With Applications to Air–Sea Exchange and Remote
Sensing*, J. Phys. Oceanogr., 46, 41–56, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Irvine and Tilley(1988)</label><?label irvine_tilley88?><mixed-citation>Irvine, D. E. and Tilley, D. G.: Ocean wave directional spectra and
wave-current interaction in the Agulhas from the Shuttle Imaging Radar-B
synthetic aperture radar, J. Geophys. Res.-Oceans, 93,
15389–15401, <ext-link xlink:href="https://doi.org/10.1029/JC093iC12p15389" ext-link-type="DOI">10.1029/JC093iC12p15389</ext-link>,
1988.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Jacob et al.(2005)</label><?label jacob05?><mixed-citation>Jacob, R., Larson, J., and Ong, E.: M <inline-formula><mml:math id="M386" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> N Communication and Parallel
Interpolation in Community Climate System Model Version 3 Using the Model
Coupling Toolkit,  Int. J. High Perform. C., 19, 293–307, <ext-link xlink:href="https://doi.org/10.1177/1094342005056116" ext-link-type="DOI">10.1177/1094342005056116</ext-link>,
2005.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Janssen(2008)</label><?label Janssen2008?><mixed-citation>Janssen, P. A.: Progress in ocean wave forecasting, J. Comp. Phys., 227, 3572–3594, <ext-link xlink:href="https://doi.org/10.1016/j.jcp.2007.04.029" ext-link-type="DOI">10.1016/j.jcp.2007.04.029</ext-link>,
2008.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Janssen(1991)</label><?label janssen91?><mixed-citation>
Janssen, P. A. E. M.: Quasi-linear Theory of Wind-Wave Generation Applied to
Wave Forecasting, J. Phys. Oceanogr., 21, 1631–1642, 1991.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Janssen(2009)</label><?label Janssen2009?><mixed-citation>Janssen, P. A. E. M.: On some consequences of the canonical transformation in
the Hamiltonian theory of water waves, J. Fluid Mech., 637,
1–44, <ext-link xlink:href="https://doi.org/10.1017/S0022112009008131" ext-link-type="DOI">10.1017/S0022112009008131</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Komen et al.(1994)</label><?label WAMBook?><mixed-citation>
Komen, G. J., Cavaleri, L., Donelan, M., Hasselmann, K., Hasselmann, S., and
Janssen, P. A. E. M.: Dynamics and modelling of ocean waves, Cambridge
University Press, Cambridge, 1994.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Large and Yeager(2009)</label><?label Large2009?><mixed-citation>Large, W. G. and Yeager, S. G.: The global climatology of an interannually
varying air–sea flux data set, Clim. Dynam., 33, 341–364,
<ext-link xlink:href="https://doi.org/10.1007/s00382-008-0441-3" ext-link-type="DOI">10.1007/s00382-008-0441-3</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Law Chune and Aouf(2018)</label><?label lawchune18?><mixed-citation>Law Chune, S. and Aouf, L.: Wave effects in global ocean modeling:
parametrizations vs. forcing from a wave model, Ocean Dynam., 68,
1739–1758, <ext-link xlink:href="https://doi.org/10.1007/s10236-018-1220-2" ext-link-type="DOI">10.1007/s10236-018-1220-2</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>Leclair and Madec(2009)</label><?label Leclair09?><mixed-citation>Leclair, M. and Madec, G.: A conservative leap-frog time stepping method,
Oceanogr. Meteorol., 30, 88–94, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2009.06.006" ext-link-type="DOI">10.1016/j.ocemod.2009.06.006</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Lemarié et al.(2020)</label><?label Lemarie_etal_2019?><mixed-citation>
Lemarié, F., Samson, G., Redelsperger, J.-L., Giordani, H., Brivoal, T.,
Masson, S., and Madec, G.: A simplified atmospheric boundary layer model for
an improved representation of air-sea interactions in eddying oceanic
models: implementation and first evaluation in NEMO(4.0), Geosci. Model
Dev. Discuss., submitted, 2020.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Li et al.(2016)</label><?label Li2016?><mixed-citation>Li, Q., Webb, A., Fox-Kemper, B., Craig, A., and Danabasoglu, G.: Langmuir
mixing effects on global climate: WAVEWATCH III in CESM, Oceanogr. Meteorol.,
103, 145–160, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2015.07.020" ext-link-type="DOI">10.1016/j.ocemod.2015.07.020</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Li et al.(2017)</label><?label Li2017?><mixed-citation>Li, Q., Fox-Kemper, B., Breivik, O., and Webb, A.: Statistical models of global
Langmuir mixing, Oceanogr. Meteorol., 113, 95–114,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2017.03.016" ext-link-type="DOI">10.1016/j.ocemod.2017.03.016</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Lévy et al.(2001)</label><?label levy01?><mixed-citation>Lévy, M., Estublier, A., and Madec, G.: Choice of an advection scheme for
biogeochemical models, Geophys. Res. Lett., 28, 3725–3728,
<ext-link xlink:href="https://doi.org/10.1029/2001GL012947" ext-link-type="DOI">10.1029/2001GL012947</ext-link>, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Madec(2012)</label><?label madec08?><mixed-citation>
Madec, G.: NEMO ocean engine, in: Note du Pole de modélisation No. 27,
Institut Pierre-Simon Laplace (IPSL), France, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx57"><label>Mapp et al.(1985)</label><?label mapp85?><mixed-citation>Mapp, G. R., Welch, C. S., and Munday, J. C.: Wave refraction by warm core
rings, J. Geophys. Res.-Oceans, 90, 7153–7162,
<ext-link xlink:href="https://doi.org/10.1029/JC090iC04p07153" ext-link-type="DOI">10.1029/JC090iC04p07153</ext-link>,
1985.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>McWilliams et al.(2004)</label><?label mcwilliams04?><mixed-citation>McWilliams, J. C., Restrepo, J. M., and Lane, E. M.: An asymptotic theory for
the interaction of waves and currents in coastal waters, J. Fluid Mech., 511,
135–178, <ext-link xlink:href="https://doi.org/10.1017/S0022112004009358" ext-link-type="DOI">10.1017/S0022112004009358</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>Mellor and Blumberg(2004)</label><?label Mellor_Blumberg_2004?><mixed-citation>
Mellor, G. and Blumberg, A.: Wave breaking and ocean surface layer thermal
response, J. Phys. Oceanogr., 34, 693–698, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Michaud et al.(2012)</label><?label Michaud_etal_2012?><mixed-citation>Michaud, H., Marsaleix, P., Leredde, Y., Estournel, C., Bourrin, F., Lyard, F., Mayet, C., and Ardhuin, F.: Three-dimensional modelling of wave-induced current from the surf zone to the inner shelf, Ocean Sci., 8, 657–681, <ext-link xlink:href="https://doi.org/10.5194/os-8-657-2012" ext-link-type="DOI">10.5194/os-8-657-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Moghimi et al.(2013)</label><?label Moghimi_etal_2013?><mixed-citation>Moghimi, S., Klingbeil, K., Gräwe, U., and Burchard, H.: A direct comparison
of a depth-dependent Radiation stress formulation and a Vortex force
formulation within a three-dimensional coastal ocean model, Ocean Model.,
70, 132–144, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2012.10.002" ext-link-type="DOI">10.1016/j.ocemod.2012.10.002</ext-link>,
2013.</mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Noh et al.(2016)</label><?label noh16?><mixed-citation>
Noh, Y., Ok, H., Lee, E., Toyoda, T., and Hirose, N.: Parameterization of
Langmuir Circulation in the Ocean Mixed Layer Model Using LES and Its
Application to the OGCM, J. Phys. Oceanogr., 46, 57–78, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx63"><label>Phillips(1984)</label><?label phillips84?><mixed-citation>
Phillips, O.: On the response of short ocean wave components at fixed
wavenumber to ocean current variations, J. Phys. Oceanogr., 14,
1425–1433, 1984.</mixed-citation></ref>
      <ref id="bib1.bibx64"><label>Polonichko(1997)</label><?label Polonichko_1997?><mixed-citation>Polonichko, V.: Generation of Langmuir circulation for nonaligned wind stress
and the Stokes drift, J. Geophys. Res., 102, 15773–15780,
<ext-link xlink:href="https://doi.org/10.1029/97JC00460" ext-link-type="DOI">10.1029/97JC00460</ext-link>,
1997.</mixed-citation></ref>
      <ref id="bib1.bibx65"><label>Rascle and Ardhuin(2009)</label><?label RascleArdhuin09?><mixed-citation>Rascle, N. and Ardhuin, F.: Drift and mixing under the ocean surface
revisited: Stratified conditions and model-data comparisons, J. Geophys.
Res., 114, C02016, <ext-link xlink:href="https://doi.org/10.1029/2007JC004466" ext-link-type="DOI">10.1029/2007JC004466</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx66"><label>Rascle and Ardhuin(2013)</label><?label Rascle&Ardhuin2013?><mixed-citation>Rascle, N. and Ardhuin, F.: A global wave parameter database for geophysical
applications. Part 2: model validation with improved source term
parameterization, Ocean Modelling, 70, 174–188,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2012.12.001" ext-link-type="DOI">10.1016/j.ocemod.2012.12.001</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx67"><label>Rascle et al.(2008)</label><?label Rascle2008?><mixed-citation>Rascle, N., Ardhuin, F., Queffeulou, P., and Croizé-Fillon, D.: A global
wave parameter database for geophysical applications. Part 1:
wave-current-turbulence interaction parameters for the open ocean based on
traditional parameterizations, Ocean Model., 25, 154–171,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2008.07.006" ext-link-type="DOI">10.1016/j.ocemod.2008.07.006</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx68"><label>Redelsperger et al.(2001)</label><?label redelsperger01?><mixed-citation>
Redelsperger, J. L., Mahé, F., and Carlotti, P.: A Simple And General
Subgrid Model Suitable Both For Surface Layer And Free-Stream Turbulence,
Bound.-Lay. Meteorol., 101, 375–408, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx69"><label>Reichl et al.(2016)</label><?label Reichl2016?><mixed-citation>Reichl, B. G., Ginis, I., Hara, T., Thomas, B., Kukulka, T., and Wang, D.:
Impact of Sea-State-Dependent Langmuir Turbulence on the Ocean Response to a
Tropical Cyclone, Mon.  Weather Rev., 144, 4569–4590,
<ext-link xlink:href="https://doi.org/10.1175/MWR-D-16-0074.1" ext-link-type="DOI">10.1175/MWR-D-16-0074.1</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx70"><label>Renault et al.(2016)</label><?label renault16?><mixed-citation>Renault, L., Molemaker, M. J., McWilliams, J. C., Shchepetkin, A. F., Lemarié,
F., Chelton, D., Illig, S., and Hall, A.: Modulation of Wind Work by Oceanic
Current Interaction with the Atmosphere, J. Phys. Oceanogr., 46,
1685–1704, <ext-link xlink:href="https://doi.org/10.1175/JPO-D-15-0232.1" ext-link-type="DOI">10.1175/JPO-D-15-0232.1</ext-link>, 2016.</mixed-citation></ref>
      <?pagebreak page3090?><ref id="bib1.bibx71"><label>Rodgers et al.(2014)</label><?label rodgers14?><mixed-citation>Rodgers, K. B., Aumont, O., Mikaloff Fletcher, S. E., Plancherel, Y., Bopp, L., de Boyer Montégut, C., Iudicone, D., Keeling, R. F., Madec, G., and Wanninkhof, R.: Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring, Biogeosciences, 11, 4077–4098, <ext-link xlink:href="https://doi.org/10.5194/bg-11-4077-2014" ext-link-type="DOI">10.5194/bg-11-4077-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx72"><label>Roquet et al.(2015)</label><?label Roquet2015?><mixed-citation>Roquet, F., Madec, G., McDougall, T., and Barker, P.: An accurate polynomial
expression for the TEOS-10 equation of state for use in ocean general
circulation models., Oceanogr. Meteorol., 90, 29–43,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2015.04.002" ext-link-type="DOI">10.1016/j.ocemod.2015.04.002</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx73"><label>Rousset et al.(2015)</label><?label Rousset15?><mixed-citation>Rousset, C., Vancoppenolle, M., Madec, G., Fichefet, T., Flavoni, S., Barthélemy, A., Benshila, R., Chanut, J., Levy, C., Masson, S., and Vivier, F.: The Louvain-La-Neuve sea ice model LIM3.6: global and regional capabilities, Geosci. Model Dev., 8, 2991–3005, <ext-link xlink:href="https://doi.org/10.5194/gmd-8-2991-2015" ext-link-type="DOI">10.5194/gmd-8-2991-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx74"><label>Skyllingstad and Denbo(1995)</label><?label skyllingstad95?><mixed-citation>Skyllingstad, E. D. and Denbo, D. W.: An ocean large-eddy simulation of
Langmuir circulations and convection in the surface mixed layer, J. Geophys.
Res., 100, 8501–8522, <ext-link xlink:href="https://doi.org/10.1029/94JC03202" ext-link-type="DOI">10.1029/94JC03202</ext-link>, 1995.</mixed-citation></ref>
      <ref id="bib1.bibx75"><label>Staneva et al.(2017)</label><?label Staneva2017?><mixed-citation>
Staneva, J., Alari, V., Breivik, Ø., Bidlot, J.-R., and Mogensen, K.:
Effects of wave-induced forcing on a circulation model of the North Sea,
Ocean Dynam., 67, 81–101, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx76"><label>Stopa et al.(2018)</label><?label Stopa&al.2018b?><mixed-citation>Stopa, J. E., Sutherland, P., and Ardhuin, F.: Strong and highly variable push
of ocean waves on Southern Ocean sea ice, P. Natl. Acad. Sci. USA, 115,
5861–5865, <ext-link xlink:href="https://doi.org/10.1073/pnas.1802011115" ext-link-type="DOI">10.1073/pnas.1802011115</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx77"><label>Suzuki and Fox-Kemper(2016)</label><?label Suzuki_BFK_2016?><mixed-citation>Suzuki, N. and Fox-Kemper, B.: Understanding Stokes forces in the wave-averaged
equations, J. Geophys. Res., 121, 3579–3596, <ext-link xlink:href="https://doi.org/10.1002/2015JC011566" ext-link-type="DOI">10.1002/2015JC011566</ext-link>,
2016.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx78"><label>Tennekes and Lumley(1972)</label><?label tennekes73?><mixed-citation>
Tennekes, H. and Lumley, J. L.: A first course in turbulence, The MIT Press,
1972.</mixed-citation></ref>
      <ref id="bib1.bibx79"><label>Tolman et al.(2002)</label><?label Tolman02?><mixed-citation>Tolman, H. L., Balasubramaniyan, B., Burroughs, L. D., Chalikov, D. V.,
Chao, Y. Y., Chen, H. S., and Gerald, V. M.: Development and
Implementation of Wind-Generated Ocean Surface Wave Modelsat NCEP, Weather
Forecast., 17, 311–333,
<ext-link xlink:href="https://doi.org/10.1175/1520-0434(2002)017&lt;0311:DAIOWG&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0434(2002)017&lt;0311:DAIOWG&gt;2.0.CO;2</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx80"><label>Uchiyama et al.(2010)</label><?label uchiyama10?><mixed-citation>Uchiyama, Y., McWilliams, J. C., and Shchepetkin, A. F.: Wave–current
interaction in an oceanic circulation model with a vortex-force formalism:
Application to the surf zone, Ocean Model., 34, 16–35,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2010.04.002" ext-link-type="DOI">10.1016/j.ocemod.2010.04.002</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx81"><label>UNESCO(1983)</label><?label unesco83?><mixed-citation>
UNESCO: Algorithms for computation of fundamental property of sea water, 44,
1983.</mixed-citation></ref>
      <ref id="bib1.bibx82"><label>Valcke(2013)</label><?label valcke12?><mixed-citation>Valcke, S.: The OASIS3 coupler: a European climate modelling community software, Geosci. Model Dev., 6, 373–388, <ext-link xlink:href="https://doi.org/10.5194/gmd-6-373-2013" ext-link-type="DOI">10.5194/gmd-6-373-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx83"><label>Van Roekel et al.(2012)</label><?label vanroekel12?><mixed-citation>Van Roekel, L. P., Fox-Kemper, B., Sullivan, P. P., Hamlington, P. E., and
Haney, S. R.: The form and orientation of Langmuir cells for misaligned winds
and waves, J. Geophys. Res., 117, C05001, <ext-link xlink:href="https://doi.org/10.1029/2011JC007516" ext-link-type="DOI">10.1029/2011JC007516</ext-link>,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx84"><?xmltex \def\ref@label{{{WAVEWATCH III\textsuperscript{\textregistered} Development
Group}(2016)}}?><label>WAVEWATCH III® Development
Group(2016)</label><?label ww3man2016?><mixed-citation>WAVEWATCH III<sup>®</sup> Development Group:
User manual and system documentation of WAVEWATCH
III <sup>®</sup> version 5.16, Tech. Note 329,
NOAA/NWS/NCEP/MMAB, College Park, MD, USA, 326 pp. + Appendices,
2016.</mixed-citation></ref>
      <ref id="bib1.bibx85"><label>Wu et al.(2019)</label><?label Wu_etal_2019?><mixed-citation>Wu, L., Staneva, J., Breivik, O., Rutgersson, A., Nurser, A. G., Clementi, E.,
and Madec, G.: Wave effects on coastal upwelling and water level, Ocean Model., 140, 101405, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2019.101405" ext-link-type="DOI">10.1016/j.ocemod.2019.101405</ext-link>,
2019.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>Development of a two-way-coupled ocean–wave model: assessment on a global NEMO(v3.6)–WW3(v6.02) coupled configuration</article-title-html>
<abstract-html><p>This paper describes the implementation of a coupling between a three-dimensional ocean
general circulation model (NEMO) and a wave model (WW3) to represent
the interactions of upper-oceanic flow dynamics with surface waves. The focus is on the impact
of such coupling on upper-ocean properties (temperature and currents) and mixed layer depth (MLD)
at global eddying scales. A generic coupling interface has been developed, and the NEMO
governing equations and boundary conditions have been adapted to include wave-induced terms following
the approach of McWilliams et al. (2004) and Ardhuin et al. (2008). In particular, the contributions of Stokes–Coriolis,
vortex, and surface pressure forces have been implemented on top of the necessary modifications of the
tracer–continuity equation and turbulent closure scheme (a one-equation turbulent kinetic energy – TKE – closure here). To assess the new
developments, we perform a set of sensitivity experiments with a global oceanic configuration at 1∕4°
resolution coupled with a wave model configured at 1∕2° resolution. Numerical simulations show a global
increase in wind stress due to the interaction with waves (via the Charnock coefficient), particularly at high
latitudes, resulting in increased surface currents. The modifications brought to the TKE closure scheme and
the inclusion of a parameterization for Langmuir turbulence lead to a significant increase in the mixing, thus
helping to deepen the MLD. This deepening is mainly located in the Southern Hemisphere and results in
reduced sea surface currents and temperatures.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Alari et al.(2016)</label><mixed-citation>
Alari, V., Staneva, J., Breivik, Ø., Bidlot, J.-R., Mogensen, K., and
Janssen, P.: Surface wave effects on water temperature in the Baltic Sea:
simulation with the coupled NEMO-WAM model, Ocean Dynam., 66, 917–930,
<a href="https://doi.org/10.1007/s10236-016-0963-x" target="_blank">https://doi.org/10.1007/s10236-016-0963-x</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Ali et al.(2019)</label><mixed-citation>
Ali, A., Christensen, K. H., Øyvind Breivik, Malila, M., Raj, R. P., Bertino,
L., Chassignet, E. P., and Bakhoday-Paskyabi, M.: A comparison of Langmuir
turbulence parameterizations and key wave effects in a numerical model of the
North Atlantic and Arctic Oceans, Ocean Model., 137,
76–97,
<a href="https://doi.org/10.1016/j.ocemod.2019.02.005" target="_blank">https://doi.org/10.1016/j.ocemod.2019.02.005</a>, 2019.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Arakawa and Lamb(1981)</label><mixed-citation>
Arakawa, A. and Lamb, V. R.: A Potential Enstrophy and Energy Conserving Scheme
for the Shallow Water Equations, Mon. Weather Rev., 109, 18–36,
<a href="https://doi.org/10.1175/1520-0493(1981)109&lt;0018:APEAEC&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0493(1981)109&lt;0018:APEAEC&gt;2.0.CO;2</a>, 1981.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Ardhuin and Jenkins(2006)</label><mixed-citation>
Ardhuin, F. and Jenkins, A. D.: On the interaction of surface waves and upper
ocean turbulence, J. Phys. Oceanogr., 36, 551–557,
<a href="https://doi.org/10.1175/JPO2862.1" target="_blank">https://doi.org/10.1175/JPO2862.1</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Ardhuin et al.(2007)</label><mixed-citation>
Ardhuin, F., Herbers, T. H. C., Watts, K. P., van Vledder, G. P., Jensen, R.,
and Graber, H. C.: Swell and Slanting-Fetch Effects on Wind Wave Growth, J.
Phys. Oceanogr., 37, 908–931, <a href="https://doi.org/10.1175/JPO3039.1" target="_blank">https://doi.org/10.1175/JPO3039.1</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Ardhuin et al.(2008)</label><mixed-citation>
Ardhuin, F., Rascle, N., and Belibassakis, K.: Explicit wave-averaged primitive
equations using a generalized Lagrangian mean, Ocean Model., 20, 35–60,
<a href="https://doi.org/10.1016/j.ocemod.2007.07.001" target="_blank">https://doi.org/10.1016/j.ocemod.2007.07.001</a>,
2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Ardhuin et al.(2009)</label><mixed-citation>
Ardhuin, F., Marié, L., Rascle, N., Forget, P., and Roland, A.: Observation
and estimation of Lagrangian, Stokes and Eulerian currents induced by wind
and waves at the sea surface, J. Phys. Oceanogr., 39, 2820–2838,
<a href="https://doi.org/10.1175/2009JPO4169.1" target="_blank">https://doi.org/10.1175/2009JPO4169.1</a>,
2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Ardhuin et al.(2010a)</label><mixed-citation>
Ardhuin, F., Rogers, E., Babanin, A., Filipot, J.-F., Magne, R., Roland, A.,
van der Westhuysen, A., Queffeulou, P., Lefevre, J.-M., Aouf, L., and
Collard, F.: Semi-empirical dissipation source functions for wind-wave
models: part I, definition, calibration and validation, J. Phys. Oceanogr.,
40, 1917–1941, <a href="https://doi.org/10.1175/2010JPO4324.1" target="_blank">https://doi.org/10.1175/2010JPO4324.1</a>, 2010a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Ardhuin et al.(2010b)</label><mixed-citation>
Ardhuin, F., Rogers, E., Babanin, A. V., Filipot, J.-F., Magne, R., Roland, A.,
van der Westhuysen, A., Queffeulou, P., Lefevre, J.-M., Aouf, L., and
Collard, F.: Semiempirical Dissipation Source Functions for Ocean Waves. Part
I: Definition, Calibration, and Validation, J. Phys. Oceanogr., 40,
1917–1941, <a href="https://doi.org/10.1175/2010JPO4324.1" target="_blank">https://doi.org/10.1175/2010JPO4324.1</a>, 2010b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Ardhuin et al.(2017a)</label><mixed-citation>
Ardhuin, F., Rascle, N., Chapron, B., Gula, J., Molemaker, J., Gille, S. T.,
Menemenlis, D., and Rocha, C.: Small scale currents have large effects on
wind wave heights, J. Geophys. Res., 122, 4500–4517,
<a href="https://doi.org/10.1002/2016JC012413" target="_blank">https://doi.org/10.1002/2016JC012413</a>, 2017a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Ardhuin et al.(2017b)</label><mixed-citation>
Ardhuin, F., Suzuki, N., McWilliams, J. C., and Aiki, H.: Comments on “A
Combined Derivation of the Integrated and Vertically Resolved, Coupled
Wave–Current Equations”, J. Phys. Oceanogr., 47, 2377–2385,
<a href="https://doi.org/10.1175/JPO-D-17-0065.1" target="_blank">https://doi.org/10.1175/JPO-D-17-0065.1</a>, 2017b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Axell(2002)</label><mixed-citation>
Axell, L. B.: Wind-driven internal waves and Langmuir circulations in a
numerical ocean model of the southern Baltic Sea, J. Geophys. Res., 107,
25–1–25–20, <a href="https://doi.org/10.1029/2001JC000922" target="_blank">https://doi.org/10.1029/2001JC000922</a>,
2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Banner and Morison(2010)</label><mixed-citation>
Banner, M. L. and Morison, R. P.: Refined source terms in wind wave models with
explicit wave breaking prediction. Part I: Model framework and validation
against field data, Ocean Model., 33, 177–189,
<a href="https://doi.org/10.1016/j.ocemod.2010.01.002" target="_blank">https://doi.org/10.1016/j.ocemod.2010.01.002</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Banner and Young(1994)</label><mixed-citation>
Banner, M. L. and Young, I. R.: Modeling Spectral Dissipation in the Evolution
of Wind Waves. Part I: Assessment of Existing Model Performance, J. Phys.
Oceanogr., 24, 1550–1571,
<a href="https://doi.org/10.1175/1520-0485(1994)024&lt;1550:MSDITE&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0485(1994)024&lt;1550:MSDITE&gt;2.0.CO;2</a>, 1994.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Barnier et al.(2006)</label><mixed-citation>
Barnier, B., Madec, G., Penduff, T., Molines, J.-M., Treguier, A.-M., Le
Sommer, J., Beckmann, A., Biastoch, A., Böning, C., Dengg, J., Derval,
C., Durand, E., Gulev, S., Remy, E., Talandier, C., Theetten, S., Maltrud,
M., McClean, J., and De Cuevas, B.: Impact of partial steps and momentum
advection schemes in a global ocean circulation model at eddy-permitting
resolution, Ocean Dynam., 56, 543–567, <a href="https://doi.org/10.1007/s10236-006-0082-1" target="_blank">https://doi.org/10.1007/s10236-006-0082-1</a>,
2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Belcher et al.(2012)</label><mixed-citation>
Belcher, S. E., Grant, A. L. M., Hanley, K. E., Fox-Kemper, B., Van Roekel, L.,
Sullivan, P. P., Large, W. G., Brown, A., Hines, A., Calvert, D., Rutgersson,
A., Pettersson, H., Bidlot, J.-R., Janssen, P. A. E. M., and Polton, J. A.: A
global perspective on Langmuir turbulence in the ocean surface boundary
layer, Geophys. Res. Lett., 39, L18605, <a href="https://doi.org/10.1029/2012GL052932" target="_blank">https://doi.org/10.1029/2012GL052932</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Bennis et al.(2011)</label><mixed-citation>
Bennis, A.-C., Ardhuin, F., and Dumas, F.: On the coupling of wave and
three-dimensional circulation models: Choice of theoretical framework,
practical implementation and adiabatic tests, Ocean Model., 40, 260–272, <a href="https://doi.org/10.1016/j.ocemod.2011.09.003" target="_blank">https://doi.org/10.1016/j.ocemod.2011.09.003</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>Boccaletti et al.(2007)</label><mixed-citation>
Boccaletti, G., Ferrari, R., and Fox-Kemper, B.: Mixed Layer Instabilities and
Restratification, J. Phys. Oceanogr., 37, 2228–2250,
<a href="https://doi.org/10.1175/JPO3101.1" target="_blank">https://doi.org/10.1175/JPO3101.1</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Boutin et al.(2019)</label><mixed-citation>
Boutin, G., Lique, C., Ardhuin, F., Accensi, M., Rousset, C., Talandier, C.,
and Girard-Ardhuin, F.: Coupling a spectral wave model with a coupled
ocean-ice model, Drakkar meeting, Grenoble, France, 21–23 January,
available at: <a href="http://pp.ige-grenoble.fr/pageperso/barnierb/WEBDRAKKAR2019/" target="_blank"/> (last access: 2 July 2020), 2019.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Breivik et al.(2014)</label><mixed-citation>
Breivik, Ø., Janssen, P., and Bidlot, J.-R.: Approximate Stokes Drift
Profiles in Deep Water, J. Phys. Oceanogr., 44, 2433–2445, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Breivik et al.(2015)</label><mixed-citation>
Breivik, Ø., Mogensen, K., Bidlot, J.-R., Balmaseda, M. A., and Janssen, P.:
Surface Wave Effects in the NEMO Ocean Model: Forced and Coupled
Experiments, J. Geophys. Res.-Oceans, 120, 2973–2992, <a href="https://doi.org/10.1002/2014JC010565" target="_blank">https://doi.org/10.1002/2014JC010565</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Breivik et al.(2016)</label><mixed-citation>
Breivik, Ø., Bidlot, J.-R., and Janssen, P.: A Stokes drift approximation
based on the Phillips spectrum, Ocean Model., 100, 49–56,
<a href="https://doi.org/10.1016/j.ocemod.2016.01.005" target="_blank">https://doi.org/10.1016/j.ocemod.2016.01.005</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Brodeau et al.(2016)</label><mixed-citation>
Brodeau, L., Barnier, B., Gulev, S. K., and Woods, C.: Climatologically
significant effects of some approximations in the bulk parameterizations of
turbulent air-sea fluxes, J. Phys. Oceanogr., 47, 5–28,
<a href="https://doi.org/10.1175/JPO-D-16-0169.1" target="_blank">https://doi.org/10.1175/JPO-D-16-0169.1</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Charnock(1955)</label><mixed-citation>
Charnock, H.: Wind stress on a water surface, Q. J. Roy. Meteor. Soc.,
81, 639–640, <a href="https://doi.org/10.1002/qj.49708135027" target="_blank">https://doi.org/10.1002/qj.49708135027</a>,
1955.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Chen and Belcher(2000)</label><mixed-citation>
Chen, G. and Belcher, S. E.: Effects of Long Waves on Wind-Generated Waves,
J. Phys. Oceanogr., 30, 2246–2256, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Chen and Curnic(2015)</label><mixed-citation>
Chen, S. and Curnic, M.: Ocean surface waves in Hurricane Ike (2008) and
Superstorm Sandy (2012): Coupled model predictions and observations,
Oceanogr. Meteorol., 103, 161–176, <a href="https://doi.org/10.5670/oceanog.2010.05" target="_blank">https://doi.org/10.5670/oceanog.2010.05</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Couvelard(2019)</label><mixed-citation>
Couvelard, X.: ORCA025-WW3-Couvelard_etal_GMD,
<a href="https://doi.org/10.5281/zenodo.3331463" target="_blank">https://doi.org/10.5281/zenodo.3331463</a>,
2019.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Couvelard et al.(2015)</label><mixed-citation>
Couvelard, X., Dumas, F., Garnier, V., Ponte, A., Talandier, C., and Treguier,
A.: Mixed layer formation and restratification in presence of mesoscale and
submesoscale turbulence, Ocean Model., 96, 243–253,
<a href="https://doi.org/10.1016/j.ocemod.2015.10.004" target="_blank">https://doi.org/10.1016/j.ocemod.2015.10.004</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Craig et al.(2017)Craig, Valcke, and Coquart</label><mixed-citation>
Craig, A., Valcke, S., and Coquart, L.: Development and performance of a new version of the OASIS coupler, OASIS3-MCT_3.0, Geosci. Model Dev., 10, 3297–3308, <a href="https://doi.org/10.5194/gmd-10-3297-2017" target="_blank">https://doi.org/10.5194/gmd-10-3297-2017</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Craig and Banner(1994)</label><mixed-citation>
Craig, P. D. and Banner, M. L.: Modeling Wave-Enhanced Turbulence in the Ocean
Surface Layer, J. Phys. Oceanogr., 24, 2546–2559, 1994.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>D'Asaro et al.(2014)</label><mixed-citation>
D'Asaro, E. A., Thomson, J., Shcherbina, A. Y., Harcourt, R. R., Cronin, M. F.,
Hemer, M. A., and Fox-Kemper, B.: Quantifying upper ocean turbulence driven
by surface waves, Geophys. Res. Lett., 41, 102–107,
<a href="https://doi.org/10.1002/2013GL058193" target="_blank">https://doi.org/10.1002/2013GL058193</a>,
2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Deardorff(1980)</label><mixed-citation>
Deardorff, J. W.: Stratocumulus-capped mixing layers derived from a
threedimensional model, Bound.-Lay. Meteorol., 18, 495–527, 1980.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>de Boyer Montégut et al.(2004)</label><mixed-citation>
de Boyer Montégut, C., Madec, G., Fischer, A. S., Lazar, A., and
Iudicone, D.: Mixed layer depth over the global ocean: An examination of
profile data and a profile-based climatology, J. Geophys. Res., 109, C12003,
<a href="https://doi.org/10.1029/2004JC002378" target="_blank">https://doi.org/10.1029/2004JC002378</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Dee et al.(2011)</label><mixed-citation>
Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P., Kobayashi,
S., Andrae, U., Balmaseda, M. A., Balsamo, G., Bauer, P., Bechtold, P.,
Beljaars, A. C. M., van de Berg, L., Bidlot, J., Bormann, N., Delsol, C.,
Dragani, R., Fuentes, M., Geer, A. J., Haimberger, L., Healy, S. B.,
Hersbach, H., Hólm, E. V., Isaksen, L., Kållberg, P., Köhler, M.,
Matricardi, M., McNally, A. P., Monge-Sanz, B. M., Morcrette, J.-J., Park,
B.-K., Peubey, C., de Rosnay, P., Tavolato, C., Thépaut, J.-N., and Vitart,
F.: The ERA-Interim reanalysis: configuration and performance of the data
assimilation system, Q. J. Roy. Meteor. Soc.,
137, 553–597, <a href="https://doi.org/10.1002/qj.828" target="_blank">https://doi.org/10.1002/qj.828</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Ducousso et al.(2017)</label><mixed-citation>
Ducousso, N., Le Sommer, J., Molines, J.-M., and Bell, M.: Impact of the
“ymmetric Instability of the Computational Kind” at mesoscale- and
submesoscale-permitting resolutions, Ocean Model., 120, 18–26,
<a href="https://doi.org/10.1016/j.ocemod.2017.10.006" target="_blank">https://doi.org/10.1016/j.ocemod.2017.10.006</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Fairall et al.(2003)</label><mixed-citation>
Fairall, C. W., Bradley, E. F., Hare, J. E., Grachev, A. A., and Edson, J. B.:
Bulk Parameterization of Air–Sea Fluxes: Updates and Verification for the
COARE Algorithm, J. Climate, 16, 571–591,
<a href="https://doi.org/10.1175/1520-0442(2003)016&lt;0571:BPOASF&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0442(2003)016&lt;0571:BPOASF&gt;2.0.CO;2</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Fan and Griffies(2014)</label><mixed-citation>
Fan, Y. and Griffies, S. M.: Impacts of Parameterized Langmuir Turbulence and
Nonbreaking Wave Mixing in Global Climate Simulations, J. Climate, 27,
4752–4775, <a href="https://doi.org/10.1175/JCLI-D-13-00583.1" target="_blank">https://doi.org/10.1175/JCLI-D-13-00583.1</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Fox-Kemper et al.(2008)</label><mixed-citation>
Fox-Kemper, B., Ferrari, R., and Hallberg, R.: Parameterization of Mixed Layer
Eddies. Part I: Theory and Diagnosis, J. Phys. Oceanogr., 38,
1145–1165, <a href="https://doi.org/10.1175/2007JPO3792.1" target="_blank">https://doi.org/10.1175/2007JPO3792.1</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Hasselmann(1991)</label><mixed-citation>
Hasselmann, K.: Ocean circulation and climate change, Tellus B, 43, 82–103, <a href="https://doi.org/10.3402/tellusb.v43i4.15399" target="_blank">https://doi.org/10.3402/tellusb.v43i4.15399</a>,
1991.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Hasselmann et al.(1985)</label><mixed-citation>
Hasselmann, S., Hasselmann, K., Allender, H., and Barnet, T. P.:  Computations
and parameterizations of the nonlinear energy transfer in a gravity wave
spectrum. Part II. Parameterizations of the nonlinear energy transfer for
application in wave models , J. Phys. Oceanogr., 15, 1378–1391, 1985.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Hilburn(2009)</label><mixed-citation>
Hilburn, K.: The passive microwave water cycle product, Remote Sensing Systems
(REMSS) Technical Report 072409, Santa Rosa (CA), 30 pp., Tech. rep., 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Hwang(2015)</label><mixed-citation>
Hwang, P. A.: Fetch- and Duration-Limited Nature of Surface Wave Growth inside
Tropical Cyclones: With Applications to Air–Sea Exchange and Remote
Sensing*, J. Phys. Oceanogr., 46, 41–56, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Irvine and Tilley(1988)</label><mixed-citation>
Irvine, D. E. and Tilley, D. G.: Ocean wave directional spectra and
wave-current interaction in the Agulhas from the Shuttle Imaging Radar-B
synthetic aperture radar, J. Geophys. Res.-Oceans, 93,
15389–15401, <a href="https://doi.org/10.1029/JC093iC12p15389" target="_blank">https://doi.org/10.1029/JC093iC12p15389</a>,
1988.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Jacob et al.(2005)</label><mixed-citation>
Jacob, R., Larson, J., and Ong, E.: M  ×  N Communication and Parallel
Interpolation in Community Climate System Model Version 3 Using the Model
Coupling Toolkit,  Int. J. High Perform. C., 19, 293–307, <a href="https://doi.org/10.1177/1094342005056116" target="_blank">https://doi.org/10.1177/1094342005056116</a>,
2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Janssen(2008)</label><mixed-citation>
Janssen, P. A.: Progress in ocean wave forecasting, J. Comp. Phys., 227, 3572–3594, <a href="https://doi.org/10.1016/j.jcp.2007.04.029" target="_blank">https://doi.org/10.1016/j.jcp.2007.04.029</a>,
2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Janssen(1991)</label><mixed-citation>
Janssen, P. A. E. M.: Quasi-linear Theory of Wind-Wave Generation Applied to
Wave Forecasting, J. Phys. Oceanogr., 21, 1631–1642, 1991.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Janssen(2009)</label><mixed-citation>
Janssen, P. A. E. M.: On some consequences of the canonical transformation in
the Hamiltonian theory of water waves, J. Fluid Mech., 637,
1–44, <a href="https://doi.org/10.1017/S0022112009008131" target="_blank">https://doi.org/10.1017/S0022112009008131</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Komen et al.(1994)</label><mixed-citation>
Komen, G. J., Cavaleri, L., Donelan, M., Hasselmann, K., Hasselmann, S., and
Janssen, P. A. E. M.: Dynamics and modelling of ocean waves, Cambridge
University Press, Cambridge, 1994.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Large and Yeager(2009)</label><mixed-citation>
Large, W. G. and Yeager, S. G.: The global climatology of an interannually
varying air–sea flux data set, Clim. Dynam., 33, 341–364,
<a href="https://doi.org/10.1007/s00382-008-0441-3" target="_blank">https://doi.org/10.1007/s00382-008-0441-3</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Law Chune and Aouf(2018)</label><mixed-citation>
Law Chune, S. and Aouf, L.: Wave effects in global ocean modeling:
parametrizations vs. forcing from a wave model, Ocean Dynam., 68,
1739–1758, <a href="https://doi.org/10.1007/s10236-018-1220-2" target="_blank">https://doi.org/10.1007/s10236-018-1220-2</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>Leclair and Madec(2009)</label><mixed-citation>
Leclair, M. and Madec, G.: A conservative leap-frog time stepping method,
Oceanogr. Meteorol., 30, 88–94, <a href="https://doi.org/10.1016/j.ocemod.2009.06.006" target="_blank">https://doi.org/10.1016/j.ocemod.2009.06.006</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Lemarié et al.(2020)</label><mixed-citation>
Lemarié, F., Samson, G., Redelsperger, J.-L., Giordani, H., Brivoal, T.,
Masson, S., and Madec, G.: A simplified atmospheric boundary layer model for
an improved representation of air-sea interactions in eddying oceanic
models: implementation and first evaluation in NEMO(4.0), Geosci. Model
Dev. Discuss., submitted, 2020.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Li et al.(2016)</label><mixed-citation>
Li, Q., Webb, A., Fox-Kemper, B., Craig, A., and Danabasoglu, G.: Langmuir
mixing effects on global climate: WAVEWATCH III in CESM, Oceanogr. Meteorol.,
103, 145–160, <a href="https://doi.org/10.1016/j.ocemod.2015.07.020" target="_blank">https://doi.org/10.1016/j.ocemod.2015.07.020</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Li et al.(2017)</label><mixed-citation>
Li, Q., Fox-Kemper, B., Breivik, O., and Webb, A.: Statistical models of global
Langmuir mixing, Oceanogr. Meteorol., 113, 95–114,
<a href="https://doi.org/10.1016/j.ocemod.2017.03.016" target="_blank">https://doi.org/10.1016/j.ocemod.2017.03.016</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Lévy et al.(2001)</label><mixed-citation>
Lévy, M., Estublier, A., and Madec, G.: Choice of an advection scheme for
biogeochemical models, Geophys. Res. Lett., 28, 3725–3728,
<a href="https://doi.org/10.1029/2001GL012947" target="_blank">https://doi.org/10.1029/2001GL012947</a>, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Madec(2012)</label><mixed-citation>
Madec, G.: NEMO ocean engine, in: Note du Pole de modélisation No. 27,
Institut Pierre-Simon Laplace (IPSL), France, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Mapp et al.(1985)</label><mixed-citation>
Mapp, G. R., Welch, C. S., and Munday, J. C.: Wave refraction by warm core
rings, J. Geophys. Res.-Oceans, 90, 7153–7162,
<a href="https://doi.org/10.1029/JC090iC04p07153" target="_blank">https://doi.org/10.1029/JC090iC04p07153</a>,
1985.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>McWilliams et al.(2004)</label><mixed-citation>
McWilliams, J. C., Restrepo, J. M., and Lane, E. M.: An asymptotic theory for
the interaction of waves and currents in coastal waters, J. Fluid Mech., 511,
135–178, <a href="https://doi.org/10.1017/S0022112004009358" target="_blank">https://doi.org/10.1017/S0022112004009358</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>Mellor and Blumberg(2004)</label><mixed-citation>
Mellor, G. and Blumberg, A.: Wave breaking and ocean surface layer thermal
response, J. Phys. Oceanogr., 34, 693–698, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Michaud et al.(2012)</label><mixed-citation>
Michaud, H., Marsaleix, P., Leredde, Y., Estournel, C., Bourrin, F., Lyard, F., Mayet, C., and Ardhuin, F.: Three-dimensional modelling of wave-induced current from the surf zone to the inner shelf, Ocean Sci., 8, 657–681, <a href="https://doi.org/10.5194/os-8-657-2012" target="_blank">https://doi.org/10.5194/os-8-657-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Moghimi et al.(2013)</label><mixed-citation>
Moghimi, S., Klingbeil, K., Gräwe, U., and Burchard, H.: A direct comparison
of a depth-dependent Radiation stress formulation and a Vortex force
formulation within a three-dimensional coastal ocean model, Ocean Model.,
70, 132–144, <a href="https://doi.org/10.1016/j.ocemod.2012.10.002" target="_blank">https://doi.org/10.1016/j.ocemod.2012.10.002</a>,
2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Noh et al.(2016)</label><mixed-citation>
Noh, Y., Ok, H., Lee, E., Toyoda, T., and Hirose, N.: Parameterization of
Langmuir Circulation in the Ocean Mixed Layer Model Using LES and Its
Application to the OGCM, J. Phys. Oceanogr., 46, 57–78, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>Phillips(1984)</label><mixed-citation>
Phillips, O.: On the response of short ocean wave components at fixed
wavenumber to ocean current variations, J. Phys. Oceanogr., 14,
1425–1433, 1984.
</mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>Polonichko(1997)</label><mixed-citation>
Polonichko, V.: Generation of Langmuir circulation for nonaligned wind stress
and the Stokes drift, J. Geophys. Res., 102, 15773–15780,
<a href="https://doi.org/10.1029/97JC00460" target="_blank">https://doi.org/10.1029/97JC00460</a>,
1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>Rascle and Ardhuin(2009)</label><mixed-citation>
Rascle, N. and Ardhuin, F.: Drift and mixing under the ocean surface
revisited: Stratified conditions and model-data comparisons, J. Geophys.
Res., 114, C02016, <a href="https://doi.org/10.1029/2007JC004466" target="_blank">https://doi.org/10.1029/2007JC004466</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>Rascle and Ardhuin(2013)</label><mixed-citation>
Rascle, N. and Ardhuin, F.: A global wave parameter database for geophysical
applications. Part 2: model validation with improved source term
parameterization, Ocean Modelling, 70, 174–188,
<a href="https://doi.org/10.1016/j.ocemod.2012.12.001" target="_blank">https://doi.org/10.1016/j.ocemod.2012.12.001</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>Rascle et al.(2008)</label><mixed-citation>
Rascle, N., Ardhuin, F., Queffeulou, P., and Croizé-Fillon, D.: A global
wave parameter database for geophysical applications. Part 1:
wave-current-turbulence interaction parameters for the open ocean based on
traditional parameterizations, Ocean Model., 25, 154–171,
<a href="https://doi.org/10.1016/j.ocemod.2008.07.006" target="_blank">https://doi.org/10.1016/j.ocemod.2008.07.006</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>Redelsperger et al.(2001)</label><mixed-citation>
Redelsperger, J. L., Mahé, F., and Carlotti, P.: A Simple And General
Subgrid Model Suitable Both For Surface Layer And Free-Stream Turbulence,
Bound.-Lay. Meteorol., 101, 375–408, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>Reichl et al.(2016)</label><mixed-citation>
Reichl, B. G., Ginis, I., Hara, T., Thomas, B., Kukulka, T., and Wang, D.:
Impact of Sea-State-Dependent Langmuir Turbulence on the Ocean Response to a
Tropical Cyclone, Mon.  Weather Rev., 144, 4569–4590,
<a href="https://doi.org/10.1175/MWR-D-16-0074.1" target="_blank">https://doi.org/10.1175/MWR-D-16-0074.1</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib70"><label>Renault et al.(2016)</label><mixed-citation>
Renault, L., Molemaker, M. J., McWilliams, J. C., Shchepetkin, A. F., Lemarié,
F., Chelton, D., Illig, S., and Hall, A.: Modulation of Wind Work by Oceanic
Current Interaction with the Atmosphere, J. Phys. Oceanogr., 46,
1685–1704, <a href="https://doi.org/10.1175/JPO-D-15-0232.1" target="_blank">https://doi.org/10.1175/JPO-D-15-0232.1</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib71"><label>Rodgers et al.(2014)</label><mixed-citation>
Rodgers, K. B., Aumont, O., Mikaloff Fletcher, S. E., Plancherel, Y., Bopp, L., de Boyer Montégut, C., Iudicone, D., Keeling, R. F., Madec, G., and Wanninkhof, R.: Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring, Biogeosciences, 11, 4077–4098, <a href="https://doi.org/10.5194/bg-11-4077-2014" target="_blank">https://doi.org/10.5194/bg-11-4077-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib72"><label>Roquet et al.(2015)</label><mixed-citation>
Roquet, F., Madec, G., McDougall, T., and Barker, P.: An accurate polynomial
expression for the TEOS-10 equation of state for use in ocean general
circulation models., Oceanogr. Meteorol., 90, 29–43,
<a href="https://doi.org/10.1016/j.ocemod.2015.04.002" target="_blank">https://doi.org/10.1016/j.ocemod.2015.04.002</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib73"><label>Rousset et al.(2015)</label><mixed-citation>
Rousset, C., Vancoppenolle, M., Madec, G., Fichefet, T., Flavoni, S., Barthélemy, A., Benshila, R., Chanut, J., Levy, C., Masson, S., and Vivier, F.: The Louvain-La-Neuve sea ice model LIM3.6: global and regional capabilities, Geosci. Model Dev., 8, 2991–3005, <a href="https://doi.org/10.5194/gmd-8-2991-2015" target="_blank">https://doi.org/10.5194/gmd-8-2991-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib74"><label>Skyllingstad and Denbo(1995)</label><mixed-citation>
Skyllingstad, E. D. and Denbo, D. W.: An ocean large-eddy simulation of
Langmuir circulations and convection in the surface mixed layer, J. Geophys.
Res., 100, 8501–8522, <a href="https://doi.org/10.1029/94JC03202" target="_blank">https://doi.org/10.1029/94JC03202</a>, 1995.
</mixed-citation></ref-html>
<ref-html id="bib1.bib75"><label>Staneva et al.(2017)</label><mixed-citation>
Staneva, J., Alari, V., Breivik, Ø., Bidlot, J.-R., and Mogensen, K.:
Effects of wave-induced forcing on a circulation model of the North Sea,
Ocean Dynam., 67, 81–101, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib76"><label>Stopa et al.(2018)</label><mixed-citation>
Stopa, J. E., Sutherland, P., and Ardhuin, F.: Strong and highly variable push
of ocean waves on Southern Ocean sea ice, P. Natl. Acad. Sci. USA, 115,
5861–5865, <a href="https://doi.org/10.1073/pnas.1802011115" target="_blank">https://doi.org/10.1073/pnas.1802011115</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib77"><label>Suzuki and Fox-Kemper(2016)</label><mixed-citation>
Suzuki, N. and Fox-Kemper, B.: Understanding Stokes forces in the wave-averaged
equations, J. Geophys. Res., 121, 3579–3596, <a href="https://doi.org/10.1002/2015JC011566" target="_blank">https://doi.org/10.1002/2015JC011566</a>,
2016.

</mixed-citation></ref-html>
<ref-html id="bib1.bib78"><label>Tennekes and Lumley(1972)</label><mixed-citation>
Tennekes, H. and Lumley, J. L.: A first course in turbulence, The MIT Press,
1972.
</mixed-citation></ref-html>
<ref-html id="bib1.bib79"><label>Tolman et al.(2002)</label><mixed-citation>
Tolman, H. L., Balasubramaniyan, B., Burroughs, L. D., Chalikov, D. V.,
Chao, Y. Y., Chen, H. S., and Gerald, V. M.: Development and
Implementation of Wind-Generated Ocean Surface Wave Modelsat NCEP, Weather
Forecast., 17, 311–333,
<a href="https://doi.org/10.1175/1520-0434(2002)017&lt;0311:DAIOWG&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0434(2002)017&lt;0311:DAIOWG&gt;2.0.CO;2</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib80"><label>Uchiyama et al.(2010)</label><mixed-citation>
Uchiyama, Y., McWilliams, J. C., and Shchepetkin, A. F.: Wave–current
interaction in an oceanic circulation model with a vortex-force formalism:
Application to the surf zone, Ocean Model., 34, 16–35,
<a href="https://doi.org/10.1016/j.ocemod.2010.04.002" target="_blank">https://doi.org/10.1016/j.ocemod.2010.04.002</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib81"><label>UNESCO(1983)</label><mixed-citation>
UNESCO: Algorithms for computation of fundamental property of sea water, 44,
1983.
</mixed-citation></ref-html>
<ref-html id="bib1.bib82"><label>Valcke(2013)</label><mixed-citation>
Valcke, S.: The OASIS3 coupler: a European climate modelling community software, Geosci. Model Dev., 6, 373–388, <a href="https://doi.org/10.5194/gmd-6-373-2013" target="_blank">https://doi.org/10.5194/gmd-6-373-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib83"><label>Van Roekel et al.(2012)</label><mixed-citation>
Van Roekel, L. P., Fox-Kemper, B., Sullivan, P. P., Hamlington, P. E., and
Haney, S. R.: The form and orientation of Langmuir cells for misaligned winds
and waves, J. Geophys. Res., 117, C05001, <a href="https://doi.org/10.1029/2011JC007516" target="_blank">https://doi.org/10.1029/2011JC007516</a>,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib84"><label>WAVEWATCH III® Development
Group(2016)</label><mixed-citation>
WAVEWATCH III<span style="position:relative; bottom:0.5em; " class="text">®</span> Development Group:
User manual and system documentation of WAVEWATCH
III <span style="position:relative; bottom:0.5em; " class="text">®</span> version 5.16, Tech. Note 329,
NOAA/NWS/NCEP/MMAB, College Park, MD, USA, 326 pp. + Appendices,
2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib85"><label>Wu et al.(2019)</label><mixed-citation>
Wu, L., Staneva, J., Breivik, O., Rutgersson, A., Nurser, A. G., Clementi, E.,
and Madec, G.: Wave effects on coastal upwelling and water level, Ocean Model., 140, 101405, <a href="https://doi.org/10.1016/j.ocemod.2019.101405" target="_blank">https://doi.org/10.1016/j.ocemod.2019.101405</a>,
2019.
</mixed-citation></ref-html>--></article>
