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  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-13-2169-2020</article-id><title-group><article-title>Evaluating a fire smoke simulation algorithm in the National Air Quality Forecast Capability (NAQFC) by using multiple observation data sets during the Southeast Nexus (SENEX) field campaign</article-title><alt-title>Evaluating a fire simulation algorithm in NAQFC</alt-title>
      </title-group><?xmltex \runningtitle{Evaluating a fire simulation algorithm in NAQFC}?><?xmltex \runningauthor{L. Pan et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2 aff10">
          <name><surname>Pan</surname><given-names>Li</given-names></name>
          <email>li.pan@noaa.gov</email>
        <ext-link>https://orcid.org/0000-0002-1806-5414</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Kim</surname><given-names>HyunCheol</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3968-6145</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Lee</surname><given-names>Pius</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Saylor</surname><given-names>Rick</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Tang</surname><given-names>YouHua</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7089-7915</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff4">
          <name><surname>Tong</surname><given-names>Daniel</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff5">
          <name><surname>Baker</surname><given-names>Barry</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Kondragunta</surname><given-names>Shobha</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Xu</surname><given-names>Chuanyu</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Ruminski</surname><given-names>Mark G.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Chen</surname><given-names>Weiwei</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Mcqueen</surname><given-names>Jeff</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Stajner</surname><given-names>Ivanka</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>NOAA/OAR/Air Resources Laboratory, College Park, MD 20740, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>UMD/Cooperative Institute for Satellite Earth System Studies
(CISESS), College Park, MD 20740, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>NOAA/OAR/ARL/Atmospheric Turbulence and Diffusion Division, Oak
Ridge, TN 37830, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>GMU/CISESS, Fairfax, VA 22030, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>UMBC/CISESS, Baltimore, MD 21250, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>NOAA/NESDIS, College Park, MD 20740, USA</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>I. M. Systems Group at NOAA, College Park, MD 20740, USA</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Northeast Institutes of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, P. R. China</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>NOAA/NCEP/Environmental Modeling Center, College Park, MD 20740,
USA</institution>
        </aff>
        <aff id="aff10"><label>a</label><institution>now at: NOAA/NCEP/EMC and I.M.S.G, IMSG, Rockville, MD 20852. USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Li Pan (li.pan@noaa.gov)</corresp></author-notes><pub-date><day>7</day><month>May</month><year>2020</year></pub-date>
      
      <volume>13</volume>
      <issue>5</issue>
      <fpage>2169</fpage><lpage>2184</lpage>
      <history>
        <date date-type="received"><day>17</day><month>September</month><year>2018</year></date>
           <date date-type="rev-request"><day>14</day><month>December</month><year>2018</year></date>
           <date date-type="rev-recd"><day>5</day><month>March</month><year>2020</year></date>
           <date date-type="accepted"><day>27</day><month>March</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2020 Li Pan et al.</copyright-statement>
        <copyright-year>2020</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020.html">This article is available from https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e253">Multiple observation data sets – Interagency Monitoring of Protected Visual
Environments (IMPROVE) network data, the Automated Smoke Detection and Tracking
Algorithm (ASDTA), Hazard Mapping System (HMS) smoke plume shapefiles and
aircraft acetonitrile (<inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>) measurements from the NOAA Southeast
Nexus (SENEX) field campaign – are used to evaluate the HMS–BlueSky–SMOKE (Sparse Matrix Operator Kernel Emission)–CMAQ (Community Multi-scale Air Quality Model)
fire emissions and smoke plume prediction system. A similar configuration is
used in the US National Air Quality Forecasting Capability (NAQFC). The
system was found to capture most of the observed fire signals. Usage of
HMS-detected fire hotspots and smoke plume information was valuable for
deriving both fire emissions and forecast evaluation. This study also
identified that the operational NAQFC did not include fire contributions
through lateral boundary conditions, resulting in significant simulation
uncertainties. In this study we focused both on system evaluation and
evaluation methods. We discussed how to use observational data correctly to
retrieve fire signals and synergistically use multiple data sets. We also
addressed the limitations of each of the observation data sets and
evaluation methods.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e278">Wildfires and agricultural/prescribed burns are common in North America all
year round but predominantly occur during the spring and summer months (Wiedinmyer et al., 2006). These fires pose a significant
risk to air quality and human health  (Delfino et al., 2009; Rappold et
al., 2011; Dreessen et al., 2016; Wotawa and Trainer, 2000; Sapkota et al.,
2005; Jaffe et al., 2013; Johnston et al., 2012). Since January 2015, smoke
emissions from fires have been included in the National Air Quality
Forecasting Capability (NAQFC) daily PM<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula> operational forecast
(Lee et al., 2017). The NAQFC fire simulation consists of the NOAA
National Environmental and Satellite Data and Information Service (NESDIS)
Hazard Mapping System (HMS) fire detection algorithm, the US Forest
Service (USFS) BlueSky fire emissions estimation algorithm, the US EPA
Sparse Matrix Operator Kernel<?pagebreak page2170?> Emission (SMOKE) applied for fire plume rise
calculations, the NOAA National Weather Service (NWS) North American
Multi-scale Model (NAM) for meteorological prediction and the US EPA
Community Multi-scale Air Quality Model (CMAQ) for chemical transport and
transformation. In contrast to most anthropogenic emissions, smoke emissions
from fires are largely uncontrolled, transient and unpredictable.
Consequently, it is a challenge for air quality forecasting systems such as
NAQFC to describe fire emissions and their impact on air quality
(Pavlovic et al., 2016; Lee et al., 2017; J. Huang et al., 2017).</p>
      <p id="d1e290">Southeast Nexus (SENEX) was a NOAA field study conducted in the southeastern
USA in June and July 2013 (Warneke et al., 2016). This field experiment
investigated the interactions between natural and anthropogenic emissions
and their impact on air quality and climate change (Xu et al., 2016;
Neuman et al., 2016). In this work, the SENEX data set was used to evaluate
the HMS–BlueSky–SMOKE–CMAQ fire simulations during the campaign period.</p>
      <p id="d1e293">Two simulations were performed: one with and one without smoke emissions
from fires during the SENEX field campaign. Due to the large uncertainties
in the estimates of fire emissions and smoke simulations  (Baker et al.,
2016; Davis et al., 2015; Drury et al., 2014), the first step of the
evaluation focused on the fire signal capturing capability of the system.
Differences between the two simulations represented the impact of the smoke
emissions from fires on the CMAQ model results. Observations from various
sources were utilized in this analysis: (i) ground observations (Interagency
Monitoring of Protected Visual Environments (IMPROVE)), (ii) satellite
retrievals (Automated Smoke Detection and Tracking Algorithm (ASDTA) and HMS
smoke plume shape) and (iii) aircraft measurements (SENEX campaign). Fire
signals predicted by the modeling system were directly compared to these
observations. Several criteria have been used to rank efficacy of the
observation systems for fire-induced pollution plumes.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methodology</title>
      <p id="d1e304">In this section the NAQFC fire modeling system used in the study was
introduced. Uncertainties and limitations in the various modeling components
of the system are discussed. Figure 1 illustrates the schematics of the
system. There are four processing steps.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e309">Schematics of fire emission and smoke plume simulation system
used: data feed and/or modeling of physical and chemical processes were
handled largely sequentially from top to bottom and from left to right. The
right-hand four vertical boxes depict the submodel names: NESDIS Hazard
Mapping System (HMS) for wildfire hotspot detection; the US Forest Service's
BlueSky for fuel type and loading parameterization; the US EPA's Sparse
Matrix Operator Kernel (SMOKE) for handling emission characterization; and
lastly the Community Multiple-scale Air Quality model (CMAQ) for
simulating the transformation, transport and depositions of the atmospheric
constituents. The “SENEX” inset framed by bold red lines was the
domain for this study.</p></caption>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f01.png"/>

      </fig>

<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>HMS (Hazard Mapping System)</title>
      <p id="d1e325">The NOAA NESDIS HMS is a fire smoke detection system based on satellite
retrievals. At the time of this study, the satellite constellation used
consists of two versions of the Geostationary Operational Environmental Satellite (GOES-10 and
GOES-12) and five polar-orbiting satellites: MODIS (Moderate-resolution Imaging
Spectroradiometer) instruments on NASA Earth Orbiting Sysmte (EOS) Terra and Aqua satellites,
and AVHRR (Advanced Very High Resolution Radiometer) instruments on NOAA
15, 17 and 18 satellites. HMS detects wildland fire locations and analyzes their
sizes, starting times and durations  (Ruminski et al., 2008; Schroeder et
al., 2008; Ruminski and Kondragunta, 2006).</p>
      <p id="d1e328">HMS first processes satellite data by using automated algorithms for each of
the satellite platforms to detect fire locations (Justice et al., 2002;
Giglio et al., 2003; Prins and Menzel, 1992; Li et al., 2000), which is then
manually analyzed by analysts to eliminate false detections and/or add
missed fire hotspots. The size of the fire is represented by the number of
detecting pixels corresponding to the nominal resolution of MODIS or AVHRR
data. Fire starting times and durations are estimated from close inspection
of the visible-band satellite imagery. A bookkeeping file is generated at
the end of this detection step, named “hms.txt” (Fig. 1). It includes all
the thermal signal hotspots detected by the aforementioned seven satellites.
During the analyst quality control step, detected potential fire hotspots
lacking visible smoke in the retrieval's HMS (RGB real-color) imagery are
removed, resulting in a reduced fire hotspot file called either
“hmshysplit.prelim.txt” or “hmshysplit.txt” to be input into the BlueSky
processing step.</p>
      <p id="d1e331">In general, hmshysplit.prelim.txt and hmshysplit.txt are very
similar, and hmshysplit.txt is created later than
hmshysplit.prelim.txt (Fig. 1). But the differences between hmx.txt
and hmshysplit.txt (hmshysplit.prelim.txt) can be rather
substantial. The reasons for the differences are that (1) many detected fires do not
produce detectable smoke; (2) some fires/hotspots are detected only at night,
when smoke detection is not possible; and (3) smoke emission HMS imagery is
obscured by clouds and thus not detected by the analyst. Therefore, smoke
emission occurrence provided by the HMS is a conservative estimate of fire
emissions.</p>
      <p id="d1e334">Through use of multiple satellites, the likelihood of detecting fires in HMS is
robust. However, when the fire's geographical size is small, the HMS detection
accuracy dramatically decreases (Zhang et al., 2011; Hu et al., 2016).
Other limitations of the HMS fire detections include ineffective retrievals
at nighttime and under cloud cover.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>BlueSky</title>
      <p id="d1e346">BlueSky, developed by the USFS, is a modeling framework
for simulating smoke impacts on regional air quality  (Larkin et al., 2009;
Strand et al., 2012). In this study, BlueSky acted as a fire emission model
to provide input for SMOKE  (Herron-Thorpe et al., 2014; Baker et al.,
2016). BlueSky calculates fire emission based on HMS-derived locations (Fig. 1).</p>
      <p id="d1e349">Fire's geographical extent is reflected by the number of nearby fire pixels
detected by satellites in a 12 km CMAQ model grid. Fire pixels are converted
to fire burning areas<?pagebreak page2171?> in BlueSky based on the assumption that each fire
pixel has a size of 1 km<inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> and 10 % of its area can be considered as
burn-active   (Rolph et al., 2009). All fire pixels in
a 12 km grid square are aggregated. BlueSky uses the following to estimate
biomass availability: a fuel loading map from the US National Fire Danger
Rating System (NFDRS) for the conterminous USA (CONUS) with the exception of
the western USA, where the Hardy set is used  (Hardy and Hardy, 2007).
BlueSky uses the Emissions Production Model (EPM)  (Sandberg and Peterson,
1984), a simple version of the CONSUME model (version 3.0, <uri>https://www.fs.fed.us/pnw/fera/research/smoke/consume/index.shtml</uri>, last access: 6 May 2020), to calculate fuel actually burned – the
so-called consumption sums. Finally, EPM is also used in BlueSky to
calculate the fire emission hourly rate per grid cell. BlueSky outputs CO,
<inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, non-methane hydrocarbons (NMHC), total particulate matter (PM), PM<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula>,
PM<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> and heat flux (Fig. 1).</p>
      <p id="d1e405">BlueSky does not iteratively recalculate fire duration according to the
modeled diminishing fuel loading or the modeled fire behavior. In the
aggregation process, when there is more than one HMS point in a grid cell
which have different durations, all points in that grid cell are
assigned the largest duration in all points. For example, if there were three
HMS points that had durations of 10, 10 and 24 h, the aggregation would
include three points (representing 3 km<inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> assigned with 24 h duration to
all of the three HMS points.</p>
      <p id="d1e420">HMS has no information about fuel loading. BlueSky uses a default fuel
loading climatology over the eastern USA. BlueSky uses an idealized diurnal
profile for fire emissions. Uncertainties in fire sizes, fuel loading and
fire emission rates lead to large uncertainties in wildland smoke emissions
(Knorr et al., 2012; Drury et al., 2014; Davis et al., 2015).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>SMOKE</title>
      <p id="d1e431">In SMOKE (Sparse Matrix Operator Kernel Emission), the BlueSky fire
emissions data in a longitude–latitude map projection are converted to CMAQ-ready gridded emission files (Fig. 1). Fire smoke plume rise is calculated
using formulas by Briggs (1975). The heat flux from BlueSky and NAM meteorological
state variables are used as input  (Erbrink, 1994). The Briggs
algorithm calculates plume top and plume bottom; between plume top and
bottom the emission fraction is calculated layer by layer assuming a linear
distribution of flux strength in atmospheric pressure. For model layers
below the plume bottom the emission fraction is assumed to be<?pagebreak page2172?> entirely in
the smoldering condition as a function of the fire burning area.</p>
      <p id="d1e434">A speciation cross-reference map was adopted to match BlueSky chemical
species to those in CMAQ using the US EPA Source Classification Codes
(SCCs) for forest wildfires (<uri>https://ofmpub.epa.gov/sccsearch/docs/SCC-IntroToSCCs.pdf</uri>, last access: 30 April 2020). The life span
of fire is based on the HMS-detected fire starting time and duration. During
fire burning hours a constant emission rate is assumed. This constant
burn rate has been shown to be a crude estimate  (Saide et al., 2015;
Alvarado et al., 2015). Other uncertainties include plume rise (Sofiev et
al., 2012; Urbanski et al., 2014; Achtemeier et al., 2011) and fire weather
(fire influencing local weather).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>CMAQ</title>
      <p id="d1e448">The CMAQ version 4.7.1 was used. The CB05 gas phase chemical mechanism
(Yarwood et al., 2005) and the AERO5 aerosol module
(Carlton et al., 2010) were chosen. Anthropogenic
emissions were based on the US EPA 2005 National Emission Inventory (NEI)
projected to 2013  (Pan et al., 2014); biogenic emissions
(BEIS 3.14) were calculated in-line inside CMAQ.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Simulations</title>
      <p id="d1e459">The NAM provided meteorology fields to drive CMAQ  (Chai et
al., 2013). NAM meteorology is evaluated daily and results (bias, root mean square error
etc.) are posted at <uri>https://www.emc.ncep.noaa.gov/mmb/nammeteograms</uri> (last access: 30 April 2020).
The simulation domain is shown in Fig. 1. It includes two domains: (i) a
12 km domain covering the CONUS and (ii) a 4 km domain
covering the southeastern USA, where the majority of SENEX measurements
occurred. Lateral boundary conditions (LBCs) used in the smaller SENEX domain
simulation were extracted from that from the CONUS simulations. Four
scenarios were simulated: CONUS with fire emissions, CONUS without fire
emissions, SENEX with fire emissions and SENEX without fire emissions.</p>
      <p id="d1e465">There were several differences in system configuration between the NAQFC
fire smoke forecasting and the “with-fire” simulation in this study. For
models, the BlueSky versions used in NAQFC and in this study are v3.5.1
and v2.5, respectively; CMAQ versions used in NAQFC and in this study are
v5.0.2 and v4.7.1, respectively. For simulations, current fire smoke
forecasting in the NAQFC includes two runs: the analysis and the forecast
(H. C. Huang et al., 2017). The analytical run is a
24 h retrospective simulation using yesterday's meteorology and fire
emissions to provide initial conditions for today's forecast. The
forecasting run is a 48 h predictive simulation using yesterday's fire
emissions, assuming fires with duration of more than 24 h are projected
as continued fires.  The with-fire simulation in this study is exactly
identical to the analysis run in NAQFC.</p>
</sec>
<sec id="Ch1.S2.SS6">
  <label>2.6</label><title>Evaluations</title>
      <p id="d1e476">Carbon monoxide (CO) has a relatively long lifetime in the air and is
emitted by biomass burning. CO was used as a fire tracer in the prediction.
The CO difference (<inline-formula><mml:math id="M9" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO) between CMAQ simulations with and without
fire emissions was used as the indicator of fire influence. Additional
observations included potassium (K) collected at the IMPROVE sites within the SENEX domain,
acetonitrile (<inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>) measured from the SENEX campaign flights and fire
plume shape detected by the HMS analysis as real fire signals. The
enhancement in <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentration due to fire was directly compared
with those signals. At the same time, <inline-formula><mml:math id="M12" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD (aerosol optical depth)
from CMAQ (concentration simulated with fire minus that without
fire) was also used as a fire indicator when compared with smoke
masks given by the ASDTA.</p>
      <p id="d1e513">It is almost impossible to assess the uncertainty of each specific physical
process of smoke. In each modeling step in HMS, BlueSky, SMOKE and CMAQ, the
modeling system accrues uncertainties. Such uncertainties were likely
cumulative and might lead to larger error in succeeding components
(Wiedinmyer et al., 2011). For example, heat flux
from BlueSky influenced plume rise height in SMOKE and consequently
influenced plume transport in CMAQ. It is also noteworthy that when modeled
<inline-formula><mml:math id="M13" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO was against measured K or <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> the objective was to
search for enhancement signals resulting from fires but not to
account for proportional concentration changes in the tracers in the event
of a fire. Attempting to account for CMAQ simulation uncertainties in
surface ozone and particulate matter as a function of smoke emissions from
fires was difficult, but that was not the objective of this study. Rather, the
purpose of this study is to focus on analyzing the capability of the
HMS–BlueSky–SMOKE–CMAQ modeling system to capture fire signals.</p>
      <p id="d1e536">The SENEX campaign occurred in June and July, and our model simulations were
from 10 June to 20 July 2013. Throughout the campaign all available
observation data sets were used, including ground-, air- and satellite-based
acquired data. Each data set had its unique characteristics, and linking them
together gave an overall evaluation. At the same time, in each data set our
evaluations included as many observed fire cases as possible. Both
well-predicted and poorly predicted cases are presented to illustrate
potential reasons for the modeling system's behavior.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e542">In the 4 km SENEX domain, <bold>(a)</bold> the contribution (%) of CO emission
from fires that occurred inside the SENEX domain and <bold>(b)</bold> the contribution (%) of
CO flux flowing into the SENEX domain from its boundary caused by fires
burning outside the SENEX domain but inside the CONUS domain.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f02.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussions</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Observed CO versus modeled CO in SENEX</title>
      <p id="d1e573">Table 1 lists observed and modeled CO vertical profiles for the
with-fire and without-fire cases during the SENEX campaign. Observed
CO concentrations between the surface<?pagebreak page2173?> and 7 km a.g.l. (above ground
level) in the SENEX domain area remained greater than 100 ppb during all 40 d of the campaign. The highest CO concentrations were measured closer to
the surface. The maximum measured CO concentration of 1277 ppb was observed
during a flight on 3 July at 974 m a.s.l. (above sea level). During
this flight strong fire signals were observed, but the fire simulation system
missed those signals as discussed below.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e579">Observed and simulated CO (ppb) during NOAA SENEX.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Sample</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">m a.g.l.</oasis:entry>
         <oasis:entry colname="col2">size</oasis:entry>
         <oasis:entry colname="col3">Obs</oasis:entry>
         <oasis:entry colname="col4">Obs_max</oasis:entry>
         <oasis:entry colname="col5">Mod_with-fire</oasis:entry>
         <oasis:entry colname="col6">Mod_without-fire</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M15" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">166</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mn mathvariant="normal">128.93</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">38.51</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">319.55</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mn mathvariant="normal">108.70</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">21.37</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mn mathvariant="normal">107.16</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">20.34</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.54</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">500–1000</oasis:entry>
         <oasis:entry colname="col2">3565</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mn mathvariant="normal">146.19</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">44.39</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">1277.97</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mn mathvariant="normal">108.39</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">19.82</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mn mathvariant="normal">106.50</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">18.86</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.88</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">1000–1500</oasis:entry>
         <oasis:entry colname="col2">793</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:mn mathvariant="normal">125.41</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">28.09</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">299.64</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:mn mathvariant="normal">100.11</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15.63</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mn mathvariant="normal">98.49</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">14.67</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.62</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">1500–2000</oasis:entry>
         <oasis:entry colname="col2">306</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mn mathvariant="normal">119.68</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">23.99</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">265.29</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mn mathvariant="normal">100.75</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">17.04</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mn mathvariant="normal">99.08</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15.89</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.67</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">2000–2500</oasis:entry>
         <oasis:entry colname="col2">219</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mn mathvariant="normal">111.48</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">19.98</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">286.22</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mn mathvariant="normal">99.88</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">17.95</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mn mathvariant="normal">98.37</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">16.92</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.51</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">2500–3000</oasis:entry>
         <oasis:entry colname="col2">209</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mn mathvariant="normal">111.84</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">19.79</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">295.79</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mn mathvariant="normal">97.43</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">12.21</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mn mathvariant="normal">95.87</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">11.15</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.56</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">3000–3500</oasis:entry>
         <oasis:entry colname="col2">181</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:mn mathvariant="normal">109.31</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">16.66</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">197.94</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mn mathvariant="normal">89.34</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">12.09</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mn mathvariant="normal">88.13</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">11.06</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.21</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">3500–4000</oasis:entry>
         <oasis:entry colname="col2">195</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mn mathvariant="normal">110.78</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">14.36</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">140.42</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mn mathvariant="normal">92.11</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10.73</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:mn mathvariant="normal">90.25</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">9.62</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.86</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">4000–5000</oasis:entry>
         <oasis:entry colname="col2">369</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mn mathvariant="normal">89.82</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">19.09</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">138.04</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:mn mathvariant="normal">80.36</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10.15</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mn mathvariant="normal">79.17</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">9.14</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.19</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">5000–6000</oasis:entry>
         <oasis:entry colname="col2">354</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:mn mathvariant="normal">102.26</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">22.37</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">209.20</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mn mathvariant="normal">78.12</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">7.64</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:mn mathvariant="normal">76.82</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">6.28</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1.30</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">6000–7000</oasis:entry>
         <oasis:entry colname="col2">85</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mn mathvariant="normal">87.53</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">17.88</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">115.32</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mn mathvariant="normal">73.35</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">4.71</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:mn mathvariant="normal">70.58</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2.45</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">2.77</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e1275">Identified fire signals from IMPROVE measurements during
SENEX.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.97}[.97]?><oasis:tgroup cols="16">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right" colsep="1"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:colspec colnum="13" colname="col13" align="right"/>
     <oasis:colspec colnum="14" colname="col14" align="right" colsep="1"/>
     <oasis:colspec colnum="15" colname="col15" align="right"/>
     <oasis:colspec colnum="16" colname="col16" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Site</oasis:entry>
         <oasis:entry colname="col2">Date</oasis:entry>
         <oasis:entry rowsep="1" namest="col3" nameend="col8" align="center" colsep="1">Concentrations (<inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) </oasis:entry>
         <oasis:entry rowsep="1" namest="col9" nameend="col14" align="center" colsep="1">Ratio (concentration / average) </oasis:entry>
         <oasis:entry rowsep="1" namest="col15" nameend="col16" align="center">Ratio </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">EC</oasis:entry>
         <oasis:entry colname="col4">OC</oasis:entry>
         <oasis:entry colname="col5">K</oasis:entry>
         <oasis:entry colname="col6">Soil</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col9">EC</oasis:entry>
         <oasis:entry colname="col10">OC</oasis:entry>
         <oasis:entry colname="col11">K</oasis:entry>
         <oasis:entry colname="col12">Soil</oasis:entry>
         <oasis:entry colname="col13"><inline-formula><mml:math id="M61" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col14"><inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col15">BC / OC</oasis:entry>
         <oasis:entry colname="col16">K / BC</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">COHU</oasis:entry>
         <oasis:entry colname="col2">0621</oasis:entry>
         <oasis:entry colname="col3">0.28</oasis:entry>
         <oasis:entry colname="col4">2.10</oasis:entry>
         <oasis:entry colname="col5">0.05</oasis:entry>
         <oasis:entry colname="col6">0.22</oasis:entry>
         <oasis:entry colname="col7">0.13</oasis:entry>
         <oasis:entry colname="col8">2.61</oasis:entry>
         <oasis:entry colname="col9">1.4</oasis:entry>
         <oasis:entry colname="col10">1.46</oasis:entry>
         <oasis:entry colname="col11">1.42</oasis:entry>
         <oasis:entry colname="col12">0.39</oasis:entry>
         <oasis:entry colname="col13">0.84</oasis:entry>
         <oasis:entry colname="col14">1.28</oasis:entry>
         <oasis:entry colname="col15">0.1331</oasis:entry>
         <oasis:entry colname="col16">0.1933</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">MACA</oasis:entry>
         <oasis:entry colname="col2">0624</oasis:entry>
         <oasis:entry colname="col3">0.45</oasis:entry>
         <oasis:entry colname="col4">2.34</oasis:entry>
         <oasis:entry colname="col5">0.09</oasis:entry>
         <oasis:entry colname="col6">0.26</oasis:entry>
         <oasis:entry colname="col7">0.24</oasis:entry>
         <oasis:entry colname="col8">2.76</oasis:entry>
         <oasis:entry colname="col9">1.85</oasis:entry>
         <oasis:entry colname="col10">1.58</oasis:entry>
         <oasis:entry colname="col11">1.82</oasis:entry>
         <oasis:entry colname="col12">0.48</oasis:entry>
         <oasis:entry colname="col13">1.19</oasis:entry>
         <oasis:entry colname="col14">1.24</oasis:entry>
         <oasis:entry colname="col15">0.1929</oasis:entry>
         <oasis:entry colname="col16">0.1973</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">MACA</oasis:entry>
         <oasis:entry colname="col2">0703</oasis:entry>
         <oasis:entry colname="col3">0.33</oasis:entry>
         <oasis:entry colname="col4">2.32</oasis:entry>
         <oasis:entry colname="col5">0.08</oasis:entry>
         <oasis:entry colname="col6">0.16</oasis:entry>
         <oasis:entry colname="col7">0.29</oasis:entry>
         <oasis:entry colname="col8">2.11</oasis:entry>
         <oasis:entry colname="col9">1.35</oasis:entry>
         <oasis:entry colname="col10">1.57</oasis:entry>
         <oasis:entry colname="col11">1.73</oasis:entry>
         <oasis:entry colname="col12">0.29</oasis:entry>
         <oasis:entry colname="col13">1.43</oasis:entry>
         <oasis:entry colname="col14">0.94</oasis:entry>
         <oasis:entry colname="col15">0.1423</oasis:entry>
         <oasis:entry colname="col16">0.2554</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">BRIS</oasis:entry>
         <oasis:entry colname="col2">0703</oasis:entry>
         <oasis:entry colname="col3">0.24</oasis:entry>
         <oasis:entry colname="col4">0.98</oasis:entry>
         <oasis:entry colname="col5">0.21</oasis:entry>
         <oasis:entry colname="col6">0.31</oasis:entry>
         <oasis:entry colname="col7">0.11</oasis:entry>
         <oasis:entry colname="col8">2.63</oasis:entry>
         <oasis:entry colname="col9">1.49</oasis:entry>
         <oasis:entry colname="col10">1.28</oasis:entry>
         <oasis:entry colname="col11">2.79</oasis:entry>
         <oasis:entry colname="col12">0.13</oasis:entry>
         <oasis:entry colname="col13">0.35</oasis:entry>
         <oasis:entry colname="col14">1.36</oasis:entry>
         <oasis:entry colname="col15">0.2458</oasis:entry>
         <oasis:entry colname="col16">0.8851</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">GRSM</oasis:entry>
         <oasis:entry colname="col2">0621</oasis:entry>
         <oasis:entry colname="col3">0.25</oasis:entry>
         <oasis:entry colname="col4">1.56</oasis:entry>
         <oasis:entry colname="col5">0.05</oasis:entry>
         <oasis:entry colname="col6">0.24</oasis:entry>
         <oasis:entry colname="col7">0.13</oasis:entry>
         <oasis:entry colname="col8">2.52</oasis:entry>
         <oasis:entry colname="col9">1.36</oasis:entry>
         <oasis:entry colname="col10">1.45</oasis:entry>
         <oasis:entry colname="col11">1.24</oasis:entry>
         <oasis:entry colname="col12">0.49</oasis:entry>
         <oasis:entry colname="col13">0.99</oasis:entry>
         <oasis:entry colname="col14">1.42</oasis:entry>
         <oasis:entry colname="col15">0.1596</oasis:entry>
         <oasis:entry colname="col16">0.1979</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><table-wrap-foot><p id="d1e1278">Notes: (ratios for EC, OC and <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">K</mml:mi></mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:math></inline-formula>) <inline-formula><mml:math id="M51" display="inline"><mml:mo>∩</mml:mo></mml:math></inline-formula> (ratio for <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mi mathvariant="normal">soil</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula>) <inline-formula><mml:math id="M53" display="inline"><mml:mo>∩</mml:mo></mml:math></inline-formula> (ratios for <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M56" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 1.5).</p></table-wrap-foot></table-wrap>

      <p id="d1e1808">CO concentrations were underestimated by the model in almost all cases even
when the model captured CO contribution from fire emissions
spatiotemporally. Mean <inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO in each height interval was usually
above 1.5 ppb but less than 2.0 ppb. Figure 2a shows the contribution of total
CO emissions from fires which occurred inside the SENEX domain over the
simulation period. The maximum CO emissions contribution from fires was
about 3 % during the campaign. On most of those days fire emission
contributions in SENEX were less than 1 %. The average contribution
during those 40 d was 0.7 %. Figure 2b shows the contribution of CO
flowing into the SENEX domain from its boundary caused by fire outside the
SENEX domain but inside the CONUS domain (Fig. 1). The average fire
contribution to CO from outside the SENEX domain was 0.67 %. CO influenced
by fire emission in June is greater than that in July.</p>
      <p id="d1e1818">During the field experiment the general lack of large fires made evaluation
of modeled fire signature difficult since it was easier to capture large
fire signals than the smaller fires. We postulated that a clear fire signal
simulated in the HMS–BlueSky–SMOKE–CMAQ system could be indicated by <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO significantly larger than its temporal averages resulting from fires that originated inside and/or outside the SENEX domain. For example, a clear fire signal between 500 and 1000 m a.g.l. was indicated by the <inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentration that was above 2.0 ppb. It was based on the contributions of fire outside the SENEX domain and inside the SENEX domain to CO and the average CO concentration at these altitudes during SENEX of about 150 ppb (<inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mn mathvariant="normal">150</mml:mn><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0.007</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.0067</mml:mn><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e1859">Figure 3 displays the simulated <inline-formula><mml:math id="M67" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO extracted along the SENEX flight
path during the SENEX campaign. The modeled concentration showed that the
fire impacts on SENEX were not negligible despite a lack of larger fire
events as shown in Fig. 2a and b during the SENEX campaign period. That
confirmed the importance of evaluating the fire simulation system in an air
quality model. Unless a model is able to predict fire signals correctly, it
is useless for modelers to discuss fire effects on chemical composition of
the atmosphere. Details on how the model caught, missed or falsely
predicted fire signals during the SENEX campaign and a comparison of <inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO versus <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> will be discussed in the following discussion.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e1891">CMAQ-simulated <inline-formula><mml:math id="M70" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO (ppb), i.e., the CO
concentration difference between CMAQ simulation with and without fire
emissions, extracted along the overall SENEX flight paths during the SENEX
campaign between 10 June and 20 July 2013.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f03.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page2174?><sec id="Ch1.S3.SS2">
  <label>3.2</label><title>IMPROVE</title>
      <p id="d1e1917">The Interagency Monitoring of Protected Visual Environments (IMPROVE) is a
long-term air visibility monitoring program initiated in 1985
(<uri>http://vista.cira.colostate.edu/Improve/data-page</uri>, last access: 30 April 2020). It provides 24 h
integrated PM speciation measurements every third day
(Malm et al., 2004; Eatough et al., 1996). The IMPROVE data set was chosen
for this analysis because it included K (potassium), OC (organic carbon) and
EC (elemental carbon), important fire tracers. IMPROVE monitors are ground
observation sites likely influenced by nearby fire sources.</p>
      <p id="d1e1923">There were 14 IMPROVE sites in the SENEX domain (Fig. 4). Potential fire
signals were identified using CMAQ-modeled <inline-formula><mml:math id="M71" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO and IMPROVE-observed K. However, in addition to fires K has multiple sources such as
soil, sea salt and industry. Coincidentally fires should also produce
enhanced EC and OC concentrations; a fire signal should reflect
above-average values for EC, OC and K. EC, OC and K observations that were
20 % above their temporal averages during the SENEX campaign were used as
a predictor for fire event identification. Meanwhile, co-measured
<inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (nitrate) and <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> (sulfate) concentrations
are less than 1.5 times their respective temporal averages for screening
out data with industrial influences. Lastly, a third predictor was employed
so that concentrations of other soil components besides K should be below
their temporal average to eliminate conditions of spikes in K concentration
due to dust. With these three criteria the IMPROVE data were screened for
fire events (see Table 2).</p>
      <p id="d1e1962">Five fire events were observed at four IMPROVE sites. Table 2 lists measured
EC, OC, <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, K, soil and <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations (<inline-formula><mml:math id="M76" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and their ratios to averages. BC / OC and K / BC
ratios were also calculated and are listed in Table 2 to illustrate the
application of our criteria. It was found that, except for monitor BRIS (Breton Island), all
other sites (COHU – Cohutta, GA; MACA – Mammoth Cave NP, KY; GRSM – Great Smoky Mountains NP, TN) had BC / OC and K / BC ratios comparable to
the ratios of the same quantities due to biomass burning reported by other
researchers  (Reid et al., 2005; DeBell et al., 2004). BRIS is a coastal
site likely influenced by sea salt (Fig. 4).</p>
      <p id="d1e2017">For the four identified fire cases, <inline-formula><mml:math id="M78" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO as a modeled fire tracer
around the IMPROVE site was plotted. Fire signals on 21 June at COHU and
GRSM and on 24 June at MACA were reproduced in the with-fire model
simulation. The 24 June MACA case was used as an example (see Fig. 4). On
24 June 2013, detected fire spots were outside the SENEX domain, but SSW
(south-southwest) wind blew smoke plumes into the SENEX domain and affected
modeled CO at MACA. Modeled <inline-formula><mml:math id="M79" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO at MACA was 5 ppb.</p>
      <?pagebreak page2175?><p id="d1e2035">Another IMPROVE site located upwind of MACA, CADI, was also potentially
under the influence of that fire event; however, data from CADI on 24 June
did not indicate a fire influence, possibly due to the frequency of IMPROVE
sampling that eluded measurement or because the smoke plume was transported
above the surface in disagreement with what was modeled. Within the four
fire cases identified by the IMPROVE data during SENEX (Table 2), the model
successfully captured three out of four events. The model missed the fire
signal on 3 July at MACA. The following section is dedicated to the 3 July
SENEX flight.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e2040">Simulated <inline-formula><mml:math id="M80" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO (<inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula> ppb) in the SENEX domain
on 24 June 2013 at 20:00 UTC overlaid with 2 m wind arrows with a 10 m s<inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> reference arrow shown in the bottom right. The solid black circle
is detected fire hotspots by HMS. The solid triangles labeled with station
code represent IMPROVE sites used in model verification calculations.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Plume spatial coverage</title>
      <p id="d1e2086">HMS determines fire hotspot locations associated with smoke and upon
incorporating the smoke plume shape information from visible satellite
images. HMS provides smoke plume shapefiles over much of North America,
which is a two-dimensional smoke plume spatial depiction collapsing all
plume stratifications to a satellite's view seen from high above. For modeled plumes, we
integrated modeled <inline-formula><mml:math id="M83" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO by multiplying the layer values with the
corresponding CMAQ model layer thicknesses and air density to derive a
simulated smoke plume shape. HMS-derived smoke plume shape versus CMAQ-predicted smoke plume shape was then used to evaluate the fire simulation.</p>
      <p id="d1e2096">Figure of merits in space (FMS) (Rolph et al., 2009)
is a statistic for spatial analysis and was calculated as follows:
            <disp-formula id="Ch1.Ex1"><mml:math id="M84" display="block"><mml:mrow><mml:mi mathvariant="normal">FMS</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Area</mml:mi><mml:mi mathvariant="italic">_</mml:mi><mml:mi mathvariant="normal">hms</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>∩</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Area</mml:mi><mml:mi mathvariant="italic">_</mml:mi><mml:mi mathvariant="normal">cmaq</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Area</mml:mi><mml:mi mathvariant="italic">_</mml:mi><mml:mi mathvariant="normal">hms</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>∪</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Area</mml:mi><mml:mi mathvariant="italic">_</mml:mi><mml:mi mathvariant="normal">cmaq</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where Area_hms represent the area of grid cells influenced by
fire emission over CONUS detected by HMS and Area_cmaq
represent the area of grid cells over CONUS identified by model prediction.
In general, a higher FMS value indicates a better agreement between the
observed and modeled plume shape (Rolph et al., 2009).</p>
      <p id="d1e2156">Figure 5 summarizes FMS during the SENEX campaign. Average FMS was 22 %
with its maximum at 56 % on 6 July and minimum at 1.2 % on 17 June 2013.
Figure 6a exhibits the HMS-detected smoke plume and CMAQ-calculated smoke plume
over CONUS on 6 July. The FMS score was 56 %, meaning that the modeled
plume shape was consistent with that of HMS. However, HMS–BlueSky–SMOKE–CMAQ emissions system might have underestimated the intensive fire influence
areas along the border of California and Nevada. Subsequently, the model
also underpredicted its associated influence in North Dakota, South Dakota,
Minnesota, Iowa and Wisconsin.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e2162">FMS (figure of merits in space) (%) from 11 June to 19 July in
2013 during the SENEX campaign.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f05.png"/>

        </fig>

      <p id="d1e2171">Figure 6b exhibits the worst case on 17 June 2013 with a FMS score of
1.2 %. There are two reasons for this: (i) CMAQ missed the fire emissions from
Canada. Those fire sources were located outside the CONUS modeling domain, and our
simulation system used a climatologically based static LBC. Secondly on 17 June, there were a lot of fire hotspots in the southeastern USA, i.e., in
Louisiana, Arkansas and Mississippi along the Mississippi River. Hotspots
were detected, but they lacked associated smoke in the corresponding HMS
imagery (Fig. 6c). This could be due to cloud blockage or to small
agricultural debris<?pagebreak page2176?> clearing, burns in underbrush or prescribed burns.
These conditions prevented the HMS from identifying fires, and hence
emissions were not modeled for those sources.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e2176">Daily HMS-observed plume shape versus CMAQ-predicted daily
averaged plume shape on <bold>(a)</bold> 6 July 2013 and <bold>(b)</bold> 17 June 2013. The light blue
shading represents modeled plume shape (defined as total column <inline-formula><mml:math id="M85" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO),
and the thin dashed line and bold green lines encircle areas
representing HMS-derived lightly and strongly influenced plume shape,
respectively. <bold>(c)</bold> HMS-observed fire hotspots (red) and plume shapes (white)
(<uri>http://ready.arl.noaa.gov/data/archives/fires/national/arcweb</uri>, last access: 30 April 2020) on 17 June 2013.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f06.png"/>

        </fig>

      <p id="d1e2204">It is noteworthy that the FMS evaluation contained uncertainties contributed
from both modeled and observed values. The calculated campaign duration and
SENEX-wide average FMS was 22 %. It is significantly higher than that
achieved by similar analyses done by HYSPLIT (Hybrid Single Particle
Lagrangian Integrated Trajectory) smoke forecasting for the fire season of
2007 (6.1 to 11.6 %)  (Rolph et al., 2009). The
primary reason is that due to retrieval latency and cycle-queuing problems
in HMS, HMS fire information is delayed by 1 d, which means that
today's HMS list can only reflect yesterday's fire information, so HYSPLIT smoke
forecasting can only use yesterday's fire information. However, our model
simulation in this study was from a retrospective module using current-day
fire information. Such discrepancies have been discussed by Huang et al. (2020). The secondary reason is plume rise: although the HYSPLIT and CMAQ
fire plume rise were both estimated by the Briggs equation, the HYSPLIT
plume rise was limited to 75 % of the mixed layer height (MLH) during
daytime and 2 times MLH at nighttime, whereas the CMAQ fire plume rise did
not have these limitations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e2209">GOES-detected AOD influenced by fires using the ASDTA diagnostic method
(summed over 10:00 to 14:00 local time). Color-shaded region
represents the fire-smoke-influenced areas, and the color denotes the
magnitude of the retrieved AOD on <bold>(a)</bold> 14 June 2013 and <bold>(d)</bold> 25 June 2013;
simulated <inline-formula><mml:math id="M86" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD (with-fire <inline-formula><mml:math id="M87" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> without-fire) calculated by CMAQ on <bold>(b)</bold> 14 June 2013 and <bold>(e)</bold> 25 June 2013; and HMS-observed fire hotspots (red) and plume
shapes (white) on <bold>(c)</bold> 14 June 2013 and <bold>(f)</bold> 25 June 2013.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f07.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>ASDTA</title>
      <p id="d1e2259">The Automated Smoke Detection and Tracking Algorithm (ASDTA) is a
combination of two data sets: (1) the NOAA geostationary satellite (GOES-13), which
retrieves thermally enhanced aerosol optical depth due to fires using
visible channels and produces a product called GOES Aerosol/Smoke Product
(GASP)  (Prados et al., 2007), and (2) NOAA NESDIS HMS fire smoke detection. First, the observation of the increase
in AOD near the fire is attributed to the specific HMS fire; AOD values not
associated with fires are dropped. Second, a pattern recognition scheme uses
30 min geostationary satellite AOD images to track the transport of
this smoke plume away from the source. ASDTA provides the capability to
determine whether the GASP is influenced by one or multiple smoke plumes
over a location at a certain time.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e2264">Vertical distributions of CMAQ-simulated <inline-formula><mml:math id="M88" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO (ppb) shown
along a flight transect on <bold>(a)</bold> 16 June 2013 and <bold>(b)</bold> 10 July 2013; the <inline-formula><mml:math id="M89" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>-axis
label is UTC (hour) and <inline-formula><mml:math id="M90" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>-axis label is meters a.g.l. Two color bars represent
observed <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>  concentration (filled square dots and rectangle bar in ppt)
and simulated <inline-formula><mml:math id="M92" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentration (backdrop color shading and fan bar
in ppb), respectively.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f08.png"/>

        </fig>

      <p id="d1e2321">ASDTA, originally generated to provide operational support for verification
of the NOAA HYSPLIT dispersion model, predicts smoke plume direction and
extension  (Draxler and Hess, 1998). These data are also suitable for
model performance evaluation in this study. For each simulation, modeled AOD
was calculated for each sensitivity test (with fire or without fire),
and <inline-formula><mml:math id="M93" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD is defined as the difference obtained by subtracting
AOD_without-fire from AOD_with-fire.</p>
      <?pagebreak page2177?><p id="d1e2332">Figure 7a illustrates a GOES-retrieved AOD (summed over 10:00 to
14:00 local time) contour plot that reflects influences by smoke plumes
over the CONUS domain on 14 June 2013. Figure 7b presents similar results
but for simulated <inline-formula><mml:math id="M94" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD (with-fire <inline-formula><mml:math id="M95" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> without-fire). For further
evaluation of the HMS-detected smoke plume shape, Fig. 7c can be compared
with Fig. 7a and b. Figure 7a shows several regions under the influence of
fires in California, northwestern Mexico, Kansas, Missouri, Oklahoma,
Arkansas, Texas and part of the Gulf of Mexico. In the northeastern USA,
fire plumes occurred occasionally. Those regions agreed relatively well with
the shaded contours between Fig. 7a and c. However, due to the lack of
fire treatments in the CMAQ LBC, the simulation (Fig. 7b) missed smoke
influence on the northeast region of the CONUS domain. CMAQ also failed to
simulate the fire influences in the southwest region of the domain.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e2351">Plots for the 3 July 2013 case: <bold>(a)</bold> IMPROVE, <bold>(b)</bold> the flight path of
SENEX #0703 colored by measured <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentration (ppt), <bold>(c)</bold>
<inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> (ppt) vs. CO (ppb), <bold>(d)</bold> <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> (ppt) vs. AMS_Org (mg m<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(e)</bold> CMAQ-simulated <inline-formula><mml:math id="M100" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO vertical distributions
along a flight transect and <bold>(f)</bold> HMS-observed plume shape versus CMAQ
prediction.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f09.png"/>

        </fig>

      <p id="d1e2440">Similar plots for 25 June are shown in Fig. 7d, e and f for ASDTA, CMAQ
and HMS, respectively. The ASDTA (Fig. 7d) diagnosed an overestimation in
fire influences in the South, including Texas and the Gulf of Mexico, and an
underestimation in the northeastern USA. On the other hand, the model
predicted two strong fire signals clearly: near the border between Arizona
and Mexico, and in Colorado (See Fig. 7e). All the fire-influenced areas in
Fig. 7e were seen in the observations by HMS in Fig. 7f.</p>
      <p id="d1e2443">Comparing ASDTA plots and CMAQ <inline-formula><mml:math id="M101" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD plots (Fig. 7a vs. b; Fig. 7d vs. e), both similarities and differences were found. Similarities were
attributable to similar fire accounting and meteorology. Differences were
attributable to a number of reasons: HMS contains more fire hotspots than
those used by CMAQ due to domain size; only fires inside the CONUS were
included in the CMAQ fire simulation, and LBCs did not vary to reproduce
impacts of wildfires from outside of the domain.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e2455">A backward-trajectory analysis for <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentration
greater than 400 ppt measured along a SENEX flight on 3 July in <bold>(a)</bold> aerial and <bold>(b)</bold> time–vertical cross sections.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f10.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e2486">Detected fire hotspots on 3 July 2013 as daily composite: <bold>(a)</bold> hmxhysplit.txt and <bold>(b)</bold> hmx.txt.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/13/2169/2020/gmd-13-2169-2020-f11.png"/>

        </fig>

</sec>
<?pagebreak page2178?><sec id="Ch1.S3.SS5">
  <label>3.5</label><title>SENEX</title>
      <p id="d1e2510">SENEX (Southeast Nexus) was a field campaign conducted by NOAA in
cooperation with the US EPA and the National Science Foundation in June and
July 2013. Although SENEX was not specifically designed for fire studies,
its airborne measurements included PM<inline-formula><mml:math id="M103" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula> OC and EC, CO and
acetonitrile (<inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>). <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> was chosen as a fire tracer since it
is predominantly emitted from biomass burning  (Holzinger et al., 1999;
Singh et al., 2012).</p>
      <p id="d1e2548"><inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> has a residence time in the atmosphere of around 6 months
(Hamm and Warneck, 1990), and the reported <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> background
concentration is around 100–200 ppt (Singh et al.,
2003). Measured <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentrations tend to increase with altitude
(Singh et al., 2003; de Gouw et al., 2003), since biomass burning plumes
tend to ascend during long-range transport. During SENEX, measured
<inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> showed a similar pattern. Fire signals were identified through
airborne measurements of <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> when its concentration exceeded the
background, e.g., on 3 July 2013, or when its concentration peak appeared at
high altitude, e.g., on 16 June 2013 and 10 July 2013.</p>
      <p id="d1e2615"><inline-formula><mml:math id="M111" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> airborne measurements were used to identify fire plumes at
certain locations and heights during SENEX. For model evaluation, fire
locations and accurate meteorological wind fields are crucial to interpret
2-D measurements such as IMPROVE, HMS and ASDTA. To verify a 3-D fire field,
it is critical to capture plume rise. However, it was extremely difficult to
figure out plume rise from the airborne measurements. An additional
uncertainty arose due to the difference in temporal resolutions of the data:
IMPROVE, HMS shapefiles and ASDTA were daily or hourly data, whereas
airborne <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> data were measured at 1 min intervals.</p>
      <p id="d1e2643">Figure 8a shows a CMAQ-simulated <inline-formula><mml:math id="M113" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO vertical distribution along a
flight transect on 16 June 2013. This flight occurred during the weekend
over and around power plants around Atlanta, GA. The color along the flight
path represents observed <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentration in ppt. In Fig. 8a, the
concentration of <inline-formula><mml:math id="M115" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO increased from the surface to 5000 m, especially
above 2000 m. Six <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentration peaks were observed
above 2500 m a.g.l.</p>
      <p id="d1e2687">For CMAQ-simulated <inline-formula><mml:math id="M117" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO, five out of six fire signals detected by
measured <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> spikes were captured where <inline-formula><mml:math id="M119" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentrations
were all above 3 ppb. Only one fire signal was missed by the model at 18:30 UTC on 16 June 2013. The model simulation showed that long-range transport
(LRT) of smoke plumes influenced airborne concentrations. Fire signals from
the free troposphere subsided and influenced flight measurements. High EC,
OC or CO did not concur with the high-<inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> observation probably due to
species lifetime differences. The HMS smoke plume did not show any hotspots or
smoke plumes around Atlanta, suggesting that the sources of those observed
fire signals were not from its vicinity.</p>
      <p id="d1e2730">A similar phenomenon was seen on SENEX flight #0710, which occurred during
flight transects from Tennessee to Tampa, FL. Figure 8b is a similar graph
to Fig. 8a. Based on <inline-formula><mml:math id="M121" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentrations, CMAQ captured the 10 July
case as fire signals were observed. Nonetheless, <inline-formula><mml:math id="M122" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO may be overpredicted at around 19:00 UTC. The model exhibited a fire signal with <inline-formula><mml:math id="M123" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentration of about 3 ppb near 6000 m around 19:00 UTC, whereas measured
<inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> was 120 ppt.</p>
</sec>
<sec id="Ch1.S3.SS6">
  <label>3.6</label><title>SENEX flight on 3 July</title>
      <p id="d1e2775">Observations from IMPROVE, HMS and SENEX identified fire signals on 3 July 2013. ASDTA retrievals were not available. Those signals were missed by the
model. In this section, all of the evaluation methods addressed above were
used to<?pagebreak page2179?> study potential causes of failure of the model to reproduce the fire
signals.</p>
      <p id="d1e2778">At the MACA IMPROVE site on 3 July 2013, the wind direction at the surface
was southeasterly, with no fire hotspots (solid black circle) located upwind
of MACA (Fig. 9a). Without any identified hotspots upwind, the model missed
fire signals observed at MACA on 3 July 2013.</p>
      <p id="d1e2781">Flight #0703 was a night mission targeting power plants in Missouri and
Arkansas. The flight path is shown in Fig. 9b and is colored by measured
<inline-formula><mml:math id="M125" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentrations. In order to highlight <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CH</mml:mi></mml:mrow></mml:math></inline-formula>  concentrations
above 400 ppt in the measurements, <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentrations below 400 ppt
were represented by black dots. During the flight, 16 measurements of
acetonitrile concentration above 400 ppt were observed, and the maximum was
3227.9 ppt. These observations were located over northwestern Tennessee and
close to the borders of Kentucky, Illinois, Missouri and Arkansas. Except
for one observation, the flight altitude was between 500 and 1000 m a.s.l.</p>
      <p id="d1e2823">Enhancements of CO and OC were also measured concurrently with <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>.
Figure 9c and d show scatter plots for <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> versus CO and OC,
respectively. Measured <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> was highly correlated to both measured CO
and OC, with linear correlation coefficients (<inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) of 0.83 and 0.71,
respectively. The <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> / <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> ratio is around 2.7 (ppt ppb<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), which is consistent with findings of other measurements over
California in 2002 when a strong forest fire signal was intercepted by
aircraft  (de Gouw et al., 2003). The <inline-formula><mml:math id="M135" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">OC</mml:mi></mml:mrow></mml:math></inline-formula> ratio was around 6.85 (ppt/(mg m<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)), which is
also in the range of biomass burning analyses in MILAGRO (Megacity
Initiative: Local and Global Research Observations) (Aiken et al., 2010).</p>
      <p id="d1e2948">Figure 9e shows model-simulated <inline-formula><mml:math id="M137" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO with peaks below 3000 m a.g.l.
Fire signals have a substantial influences on aircraft measurement at around
05:00 UTC. However, clear fire signals between 02:00 and 03:00 UTC were observed
based on prior <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> analysis. The model either predicted insufficient
fire emission influences or missed it. The FMS score<?pagebreak page2180?> on 3 July was 30 %.
Figure 9f shows that CMAQ did not predict plumes where the HMS plume
analysis exhibited several dense smoke plumes. As the NOAA Smoke Text Product
(<uri>http://www.ssd.noaa.gov/PS/FIRE/DATA/SMOKE</uri>, last access: 30 April 2020) described in its 3 July 05:01 UTC report, a smaller very dense patch of remnant smoke, analyzed earlier
the same day over southern Missouri, drifted southward into Arkansas.</p>
      <p id="d1e2974">The reasons the model missed these fire observations are not clear. Figures 10, 11a and 11b suggest a few clues. Figure 10 is a backward-trajectory
analysis plot for the observations obtained during the SENEX flight on 3 July  with observed <inline-formula><mml:math id="M139" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> concentrations above 400 ppt. Both transect and
passing altitude of the air parcels clearly showed those measurements were
most likely influenced by the nearby pollution sources. Figure 11a
illustrates the locations of fire used in the CMAQ simulation. It is noted
that hmshysplit.txt is input into BlueSky after HMS quality control (Fig. 1). There were several hotspots around the region where the IMPROVE site
MACA was located and where the SENEX flight overpassed. Our fire simulation
system might have underestimated smoke emissions from those fires. Another
explanation can be seen from Fig. 11b, which illustrated hotspots in
hmx.txt. In hmx.txt, all fire spots detected by HMS before quality control
are shown. Comparing Fig. 11a with b, there are clusters of fire spots in
the central USA, especially in western Tennessee. However, those spots were
removed during the HMS quality control process because there were no
associated smoke plumes visible. In most cases, those fires were believed to
be small-sized fires such as from agriculture fires or prescribed burns. For
this particular case, there seem to have been thin clouds overhead and
thicker clouds in the vicinity (<uri>http://inventory.ssec.wisc.edu/inventory/assets/php/image.php?sat=GOES-13&amp;date=2013-7-3&amp;time=16:2&amp;type=Imager&amp;band=1&amp;thefilename=goes13.2013.184.160147.INDX&amp;coverage=CONUS&amp;count=1&amp;offsettz=0</uri>, last access: 2 May 2020), so it would
be hard to differentiate smoke from clouds by satellite observations.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<?pagebreak page2181?><sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions</title>
      <p id="d1e3003">In support of the NOAA SENEX field experiment in June–July 2013, simulations
were conducted including smoke emissions from fires. In this study, a system
accounting for fire emissions in a chemical transport model is described,
including a satellite fire-detecting system (HMS), a fire emission
calculation model (BlueSky), a pre-processing of fire emissions (SMOKE) and
simulation over the SENEX domain by CMAQ. The focus of this work is to
evaluate the system's capability to capture fire signals identified by
multiple observation data sets. These data sets included IMPROVE ground
station observations, satellite observations (HMS plume shapefile and ASDTA)
and airborne measurements from the SENEX campaign.</p>
      <p id="d1e3006">For the IMPROVE data, potential fire signals were identified by measured
potassium concentrations in PM<inline-formula><mml:math id="M140" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula>. Fire identifications in CMAQ rely on
predicted <inline-formula><mml:math id="M141" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO, the difference between simulations with and without
fire emissions. Three out of four observed fire signals were captured by the
CMAQ simulations. For HMS smoke plume shapefiles that were manually plotted
by analysts to represent the regions impacted by smoke, we used FMS to
calculate the percentage of its overlap with CMAQ-predicted smoke plumes.
FMS averaged 22 % over 40 days of the SENEX campaign. In terms of fire
smoke impacts on <inline-formula><mml:math id="M142" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD, both ASDTA and CMAQ showed patterns that were
compared to HMS plume shapefile. In terms of measured <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula>, a biomass
burning plume tracer, both SENEX aircraft in-flight measurements and CMAQ
simulations captured signatures of long-range transport of fire emissions
from elsewhere in the CONUS domain.</p>
      <p id="d1e3045">Generally, using HMS-detected fire hotspots and smoke data was useful for
predictions of fire impacts and their evaluation. The HMS–BlueSky–SMOKE–CMAQ
fire simulation system, which is also used in NAQFC, was able to capture
most of the fire signals detected by multiple observations. However, the
system failed to identify fire cases on 17 June and 3 July 2013 – thereby
demonstrating two problems with the simulation system. One identified
problem was the lack of a dynamical fire LBC bounding the CONUS domain to
represent the inflow of strong fire signals originating outside the
simulation domain. Secondly, the HMS quality control procedure eliminated
fire hotspots that were not associated with visible smoke plumes, leading to
an underestimation.</p>
      <p id="d1e3048">We were keen on understanding and quantifying the various uncertainties and
observational constraints of this study; therefore the following rules of
thumb were observed: (1) a holistic evaluation approach was adopted so that
the fire smoke algorithm was interpreted as a single entity to avoid
deadlock due to over-interpretation of uncertainty of the single component
in the system. (2) An analysis conclusion applicable to the entire simulation
period was drawn so that the episodic characteristics of the cases embedded
in the simulation were averaged and generalized. This new methodology may
benefit NAQFC. (3) We took advantage of the multiple perspectives of the
observation systems that offered a wide spectrum of temporal and spatial
variabilities intrinsic to the systems; (4) We were intentionally
conservative in discarding data so that we maximized the sampling pool for
statistical analysis and avoided unwittingly discarding poorly simulated
cases, good outliers and weak but accurate signals.</p>
      <p id="d1e3052">Quantitative evaluation of fire emissions and their subsequent influences on
ozone and particulate matter in this fire and smoke prediction system is
challenging. Future work includes applying these findings to the NAQFC and
improving the NAQFC system's capabilities to simulate fires accurately.</p>
</sec>

      
      </body>
    <back><notes notes-type="codeavailability"><title>Code availability</title>

      <p id="d1e3060">The source code used in this study is available online at <uri>https://github.com/NOAA-EMC/EMC_aqfs</uri> (last access: 4 May 2020; NOAA-EMC, 2020).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e3069">LP, HCK, PL, YHT, DT, BB and JM developed NAQFC fire smoke simulation system. RS, DT, SK, CYX and MGR provided simulation input and observation data. LP, HCK and WWC carried out model simulation and analyzed the result. LP, PL, RS and IS wrote the paper.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e3075">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3081">The authors are thankful to Joost De
Gouw and  Martin G. Graus of the Earth System Research Laboratory, NOAA,
for sharing the SENEX campaign data used in this study. Although this work
has been reviewed by the Air Resources Laboratory, NOAA, and approved for
publication, it does not necessarily reflect their policies or views.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e3086">This research has been supported by the AQAST (grant no. NNH14AX881).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e3092">This paper was edited by Fiona O'Connor and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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