<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-12-3641-2019</article-id><title-group><article-title>Systematic bias in evaluating chemical transport models with maximum daily
8 h average (MDA8) surface ozone for air quality applications: a case
study with GEOS-Chem v9.02</article-title><alt-title>Systematic bias in evaluating chemical transport models</alt-title>
      </title-group><?xmltex \runningtitle{Systematic bias in evaluating chemical transport models}?><?xmltex \runningauthor{K.~R.~Travis and D.~J.~Jacob }?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff3">
          <name><surname>Travis</surname><given-names>Katherine R.</given-names></name>
          <email>katherine.travis@nasa.gov </email>
        <ext-link>https://orcid.org/0000-0003-1628-0353</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Jacob</surname><given-names>Daniel J.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>School of Engineering and Applied Sciences, Harvard University,
Cambridge, MA, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Earth and Planetary Sciences, Harvard University,
Cambridge, MA, USA</institution>
        </aff>
        <aff id="aff3"><label>a</label><institution>now at: NASA Langley Research Center, Hampton, VA, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Katherine R. Travis (katherine.travis@nasa.gov)
</corresp></author-notes><pub-date><day>22</day><month>August</month><year>2019</year></pub-date>
      
      <volume>12</volume>
      <issue>8</issue>
      <fpage>3641</fpage><lpage>3648</lpage>
      <history>
        <date date-type="received"><day>27</day><month>March</month><year>2019</year></date>
           <date date-type="rev-request"><day>4</day><month>April</month><year>2019</year></date>
           <date date-type="rev-recd"><day>19</day><month>July</month><year>2019</year></date>
           <date date-type="accepted"><day>22</day><month>July</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 </copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/.html">This article is available from https://gmd.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e102">Chemical transport models frequently evaluate their
simulation of surface ozone with observations of the maximum daily 8 h
average (MDA8) concentration, which is the standard air quality policy
metric. This requires successful simulation of the surface ozone diurnal
cycle including nighttime depletion, but models often have difficulty
simulating this diurnal cycle for a number of reasons, including (1) vertical
grid structure in the surface layer, (2) timing of changes in mixed layer
dynamics and ozone deposition velocity across the day–night transition, (3) poor representation of nighttime stratification, and (4) uncertainties in ozone
nighttime deposition. We analyze the problem with the GEOS-Chem model,
taking as a representative case study the Southeast US during the NASA
SEAC<inline-formula><mml:math id="M1" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS aircraft campaign in August–September 2013. The model is
unbiased relative to the daytime mixed layer aircraft observations but has a
mean <inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> ppb bias at its lowest level (65 m) relative to MDA8 surface ozone
observations. The bias can be corrected to <inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> ppb by implicit sampling of
the model at the 10 m altitude of the surface observations. The model does
not capture frequent observed occurrences of <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> ppb MDA8 surface
ozone on rainy days, possibly because of enhanced ozone
deposition to wet surfaces that is unaccounted for. Restricting the surface ozone evaluation to dry
days still shows inconsistencies with MDA8 ozone because of model errors in
the ozone diurnal cycle. Restricting the evaluation to afternoon ozone
completely removes the bias. We conclude that better representation of
diurnal variations in mixed layer dynamics and ozone deposition velocities
is needed in models to properly describe the diurnal cycle of ozone.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e155">Ground-level ozone is harmful to human health and vegetation. It is produced
when volatile organic compounds (VOCs) and carbon monoxide (CO) are
photochemically oxidized in the presence of nitrogen oxide radicals
(<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow><mml:mo>≡</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>). Ozone air quality standards in different
countries are generally formulated using the maximum daily 8 h average
concentration (MDA8) as a metric. In the US, the current ozone National
Ambient Air Quality Standard (NAAQS) set by the Environmental Protection
Agency (EPA) is 70 ppb, as the fourth-highest MDA8 concentration per year
averaged over 3 years (EPA, 2015). Exceedances of the standard generally
occur during daytime due to photochemical production and to the entrainment of
elevated ozone from aloft (Kleinman et al., 1994). Ozone is depleted at
night due to deposition and chemical loss in a shallow surface layer capped
by a stratified atmosphere.</p>
      <p id="d1e182">Air quality agencies rely on chemical transport models (CTMs) to identify
the most effective emission reduction strategies for ozone pollution. CTMs
predict surface ozone concentrations on the basis of <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, VOC, and CO
emissions, accounting for chemistry and meteorological conditions. CTMs tend
to overestimate surface ozone, particularly in the Southeast United States
(Fiore et al., 2009; Makar et al., 2017). Some of this overestimate is
likely due to bias in the <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission inventories (Anderson et al.,
2014; Travis et al., 2016), but the choice of comparison metric could also
play a role. MDA8 ozone is commonly used as the metric for evaluating models
with observations and making<?pagebreak page3642?> predictions relevant to air quality standards
(Fiore et al., 2009; Mueller and Mallard, 2011; Emery et al., 2012; Lin et
al., 2012; Rieder et al., 2015). The use of this metric implicitly requires
the successful simulation of the diurnal cycle in surface ozone, but models are
often too high at night, apparently because they cannot resolve the local
stratification and associated depletion from surface deposition. This is a
problem not only in global models with coarse vertical resolution (Lin and
McElroy, 2010; Schnell et al., 2015; Strode et al., 2015) but also in
regional air quality models (Herwehe et al., 2011; Solazzo et al., 2012;
Solazzo and Galmarini, 2016). A recent evaluation of the CMAQ regional model
shows little bias in the diurnal cycle averaged over all monitoring sites in
the contiguous US (Appel et al., 2017), but such averaging may smooth the
diurnal cycle across different regions (Bowdalo et al., 2016) and across
urban, rural, and background sites.</p>
      <p id="d1e207">Here we evaluate the use of the MDA8 ozone metric in the GEOS-Chem CTM, a
global model frequently used in studies of regional ozone air quality and
evaluated for this purpose with MDA8 ozone (Racherla and Adams, 2008; Lam et
al., 2011; Zhang et al., 2011, 2014; Zoogman et al., 2011; Emery et al., 2012). We focus on the Southeast US in summer, when extensive
model evaluation with observations of ozone and its precursors was done as
part of the NASA SEAC<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS aircraft campaign (Travis et al., 2016). After
correcting for bias in <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, Travis et al. (2016) found that
the model had no significant ozone bias relative to aircraft observations
below 1 km of altitude but still overestimated MDA8 surface ozone by <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> ppb
on average. As we show here, this may largely be explained by the inability
of the model to represent nighttime ozone depletion from the shallow surface
layer. The ultimate solution of this problem will require improved
representation of boundary layer physics, but we propose in the meantime
some simple corrective measures.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Bias in simulation of MDA8 surface ozone</title>
      <p id="d1e248">We use the GEOS-Chem simulation previously applied by Travis et al. (2016)
to interpret observations from the SEAC<inline-formula><mml:math id="M11" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS aircraft campaign in
August–September 2013 (Toon et al., 2016). The simulation is based on
GEOS-Chem version 9.02 with detailed oxidant–aerosol chemistry (<uri>http://www.geos-chem.org</uri>, last access: 17 August 2015) and is driven by assimilated meteorological data from
the Goddard Earth Observing System – Forward Processing (GEOS-FP) product
of the NASA Global Modeling and Assimilation Office (GMAO) using the
GEOS-5.11.0 general circulation model (Molod et al., 2012). The GEOS-FP data
have a native horizontal resolution of 0.25<inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> latitude by
0.3125<inline-formula><mml:math id="M13" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> longitude, with 72 levels in the vertical extending up to
the mesosphere on a hybrid sigma–pressure grid and a temporal resolution of
1 h for surface variables and mixing depths. The lowest levels are
centered at 65, 130, 200, and 270 m above ground level (a.g.l.). Boundary
layer turbulence follows the clear-sky nonlocal parameterization from
Holtslag and Boville (1993), as implemented in GEOS-Chem by Lin and McElroy (2010). Dry deposition of ozone follows a standard resistance-in-series
scheme (Wesely, 1989; Wang et al., 1998) wherein the surface resistance
depends on leaf area and stomatal opening (itself dependent on temperature
and solar radiation). The native <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
resolution is used in GEOS-Chem over North America and adjacent oceans
(130–60<inline-formula><mml:math id="M15" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W, 9.75–60<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N), with
boundary conditions from a global simulation with <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> horizontal resolution. Detailed evaluations of GEOS-Chem with
observations over the Southeast US for the SEAC<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS period are presented
in other papers (Kim et al., 2015; Fisher et al., 2016; Marais et al., 2016;
Yu et al., 2016; Zhu et al., 2016; Chan Miller et al., 2017). A specific evaluation
for ozone and related species is presented in Travis et al. (2016).</p>
      <p id="d1e349">Travis et al. (2016) found that despite the successful simulation of ozone and
its precursors in the SEAC<inline-formula><mml:math id="M19" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS aircraft data below 1 km of altitude, MDA8
surface ozone was biased high in the model by <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> ppb on average. Figure 1a
shows the frequency distributions of ozone concentrations
measured by the aircraft in the mixed layer below 1 km during afternoon
hours (12:00–17:00 local solar time or LT) and simulated by the model along the
flight tracks and at the flight times. The data have been filtered for
biomass burning (<inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CN</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> ppt) and urban plumes (<inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> ppb), which the model would not be expected to capture. The
bias between the model and observations is small (<inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> ppb) and within
statistical uncertainty (<inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.07</mml:mn></mml:mrow></mml:math></inline-formula>). Figure 1b shows the
observed and simulated frequency distributions of daily MDA8 surface ozone
in August–September 2013 at the 13 rural CASTNET sites in the
Southeast US (EPA, 2018), with the model sampled at the lowest model grid
level (<inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">65</mml:mn></mml:mrow></mml:math></inline-formula> m a.g.l.). The Southeast US region is a relatively
coherent region for surface ozone, with different sites showing similar
behaviors (Bowdalo et al., 2016). The model is biased high by <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> ppb on
average and this is highly significant (<inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>). The bias differs
slightly from the <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> ppb in Travis et al. (2016), who showed a comparison
for June–August versus August–September as shown here. Comparison of the mean ozone
concentrations in the mixed layer (aircraft afternoon data below 1 km) and
at the surface (MDA8) indicates a vertical difference of 9 ppb in the
observations but only 3 ppb in GEOS-Chem.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e488">Frequency distributions of ozone concentrations in the Southeast
US (94.5–80<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W, 29.5–38<inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N) in August–September 2013, sampled at the blue
locations in the map insets. Observations are compared to GEOS-Chem model
values sampled at the same locations and times. Means and standard
deviations are given in the insets.  Panel <bold>(a)</bold> shows afternoon (12:00–17:00 local
solar time) mixed layer values from the SEAC<inline-formula><mml:math id="M33" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS DC8 aircraft at 0.4–1.0 km of altitude. Ozone measurements are from the NOAA <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> four-channel
chemiluminescence (CL) instrument (Ryerson et al., 1998). Panel <bold>(b)</bold>
shows MDA8 surface ozone at the CASTNET network of 13 rural sites compared
to the model sampled at the lowest model grid point 65 m above the ground (dashed
line) and the inferred model value at 10 m (solid line) as described in the
text. Panel <bold>(c)</bold> shows afternoon ozone at the CASTNET sites, excluding
days with rain in either the model or the observations.</p></caption>
        <?xmltex \igopts{width=441.017717pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/12/3641/2019/gmd-12-3641-2019-f01.png"/>

      </fig>

</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Correcting for surface layer gradients</title>
      <?pagebreak page3643?><p id="d1e558">A first problem in comparing the model to the CASTNET surface air
observations is the mismatch between the lowest model level midpoint
(<inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">65</mml:mn></mml:mrow></mml:math></inline-formula> m a.g.l.) and the level at which the observations are made
(<inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> m a.g.l.). This can be corrected easily because the model
implicitly simulates an ozone concentration at <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> through the
aerodynamic resistance <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to turbulent vertical transfer
in the resistance-in-series parameterization of dry deposition (Brasseur and
Jacob, 2017). The model calculates a local ozone deposition velocity
<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msub><mml:mi>v</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at altitude <inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> assuming uniform vertical flux down to the
surface. We can then infer the implicit model ozone concentration
<inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mi>C</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at 10 m from the explicit concentration <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:mi>C</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at 65 m (Zhang et al., 2012):
          <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M43" display="block"><mml:mrow><mml:mi>C</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:msub><mml:mi>v</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mi>C</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is  calculated in GEOS-Chem by similarity with
momentum for a neutral atmosphere including a
heat-based stability correction <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, whereby <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mo>*</mml:mo></mml:mrow></mml:math></inline-formula> is the friction velocity and <inline-formula><mml:math id="M48" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> is the
Monin–Obukhov length:
          <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M49" display="block"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:munderover><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi>k</mml:mi><mml:msup><mml:mi>u</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Here <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula> is the von Kármán constant. Equations (3a)–(3c) describe
<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from Dyer (1974)  for unstable and moderately stable
conditions (<inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>) and from Holtslag et al. (1990)  for stable
conditions (<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>).

              <disp-formula id="Ch1.E3" specific-use="align" content-type="subnumberedsingle"><mml:math id="M54" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E3.4"><mml:mtd><mml:mtext>3a</mml:mtext></mml:mtd><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>+</mml:mo><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3.5"><mml:mtd><mml:mtext>3b</mml:mtext></mml:mtd><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mn mathvariant="normal">0</mml:mn><mml:mo>&lt;</mml:mo><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3.6"><mml:mtd><mml:mtext>3c</mml:mtext></mml:mtd><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>L</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          The model deposition velocity <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msub><mml:mi>v</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> over the Southeast US during
SEAC<inline-formula><mml:math id="M56" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS averages <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.7</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula> cm s<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in daytime, consistent
with observations (Travis et al., 2016). Applying the transfer function from
Eq. (1) at the CASTNET sites we find a mean MDA8 model concentration at
10 m of altitude of <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mn mathvariant="normal">45</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> ppb compared to <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mn mathvariant="normal">48</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula> ppb at 65 m.
Correcting the model to 10 m of altitude thus decreases the model bias relative
to observations by 3 ppb, but a bias of <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> ppb remains. Model MDA8 ozone
at 65 m has 10 exceedances of the 70 ppb NAAQS for the CASTNET data in Fig. 1 compared to 1 exceedance in the observations, and sampling the model
at 10 m decreases the number of model exceedances to 4.</p>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Segregating rainy conditions</title>
      <p id="d1e1198">The most severe bias in comparing the model MDA8 ozone to the CASTNET
observations in Fig. 1 is for the low tail of the distribution (ozone below
25 ppb); 7 % of observed MDA8 ozone values are below 25 ppb (<inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">49</mml:mn></mml:mrow></mml:math></inline-formula>), but
there is only one value below 25 ppb in the model at either 65 or 10 m. This
low-tail model bias has been found before (Fiore et al., 2002;
McDonald-Buller et al., 2011) and attributed to the inflow of low-ozone tropical
air from the Gulf of Mexico. However, our model simulation is unbiased over
the Gulf of Mexico relative to the SEAC<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS aircraft observations
(Travis et al., 2016). In addition, the occurrence of low values of observed
MDA8 ozone is distributed across the CASTNET sites in the Southeast and is
not related to distance from the Gulf.</p>
      <?pagebreak page3644?><p id="d1e1222">We find instead that the low MDA8 ozone values in the CASTNET observations
are associated with rainy conditions and that rain has less of an effect on
ozone in the model. Figure 2 segregates the frequency distribution of MDA8
ozone at CASTNET sites between rainy days and dry days. Rainy days are
defined by 24 h total rainfall exceeding 6 mm and dry days by 24 h total
rainfall less than 1 mm. Rainy and dry days are diagnosed in the
observations with high-resolution data from the Parameter-elevation
Regressions on Independent Slopes Model (PRISM) Climate Group (PRISM, 2016)
regridded to the model resolution of <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>.
Rainy and dry days in the model are diagnosed from the GEOS-FP data and do
not necessarily coincide with rainy and dry days in the observations; our
purpose here is to compare how rain affects ozone in the observations and in
the model; 15 % of observation days and 10 % of model days are rainy.
Observed ozone on rainy days averages 9 ppb lower than on dry days (33 vs. 42 ppb). Model ozone on rainy days averages only 5 ppb lower than on dry
days (41 vs. 46 ppb). Rainy conditions can cause MDA8 ozone to drop below 20 ppb in the observations but not in the model. Depletion of surface ozone
under rainy conditions is not due to wet scavenging, considering the low
solubility of ozone in water. It may instead reflect increased atmospheric
stability from surface evaporative cooling, combined with increased ozone
dry deposition on wet surfaces (Finkelstein et al., 2000; Altimir et al., 2006;  Potier et al., 2017; Clifton et al., 2019) that is not
considered in our standard surface resistance model for dry deposition.
Excluding all rainy days in the comparison of the model to observations for MDA8
ozone decreases the model mean bias modestly from <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> ppb, but
more importantly it excludes the low tail of the observed distribution that
the model cannot capture.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e1267">Frequency distributions of MDA8 ozone at CASTNET sites in the
Southeast US in August–September 2013, segregating rainy and dry days as
described in the text. The model is sampled at 10 m of altitude to match
observations, as described in Sect. 3. Mean ozone and its standard
deviation are given in the inset, with the percentages of dry and rainy days in
parentheses. The percentages do not add up to 100 % because of an additional
contribution from marginal days on which rainfall is between 1 and 6 mm.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/12/3641/2019/gmd-12-3641-2019-f02.png"/>

      </fig>

</sec>
<sec id="Ch1.S5">
  <label>5</label><title>Accounting for diurnal bias</title>
      <p id="d1e1284">Yet another factor in the model overestimate of MDA8 surface ozone is the
poor simulation of the diurnal cycle. Figure 3 shows the average ozone
diurnal cycle for dry days in the model and in the observations at the
CASTNET sites of Fig. 1. The observations show maximum values in the
afternoon (14:00–16:00 LT) and a gradual decrease at night to a mean minimum value
of 17 ppb at 07:00 LT. The nighttime depletion cannot be due to chemical
titration by anthropogenic NO emissions since the selected CASTNET sites are
rural and not located near major roadways or industrial sources. It must
instead be due to deposition, including possible titration by short-lived
biogenic VOCs (Goldstein et al., 2004; Ruuskanen et al., 2011; Rossabi et
al., 2018) under stratified surface layer conditions. The model diurnal
cycle at 65 m of altitude (lowest model level) has the correct phase but the
amplitude is much too weak. Correcting the model to 10 m of altitude (thus
accounting for the vertical gradient within the lowest model level,
including for stable conditions as given by Eqs. 1, 2, and 3c)
increases the amplitude, but nighttime depletion is still insufficient. The
difference between 65 and 10 m grows rapidly in late afternoon between 16:00
and 18:00 LT as the atmosphere becomes stable (<inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>) but ozone
deposition is still fast because of open stomata. After the stomata close at
night the gradient weakens. We find a negligible difference in the model
diurnal cycle shown in Fig. 3 between August and September. The lack of
a diurnal cycle in modeled anthropogenic emissions has been suggested as a
cause of the general underestimate among models of the summertime diurnal
amplitude of ozone concentrations (Schnell et al., 2015), but the emissions
used here have an hourly resolution based on the National Emission Inventory of
the US Environmental Protection Agency. We conclude that the insufficient
nighttime depletion in the model must be due to insufficient vertical
stratification of the surface layer, together with a possible underestimate of
nighttime deposition (Musselman and Minnick, 2000; Lombardozzi et al., 2017).
The large ozone bias in the evening hours may reflect small errors in the
correlated timing between the day–night transition to stable conditions and
stomata closure.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e1301">Mean diurnal cycle of ozone and related surface variables at the
13 Southeast US CASTNET sites in Fig. 1 for August–September 2013. Ozone
observations in panel <bold>(a)</bold> are compared to GEOS-Chem values sampled
at 65 m of altitude (lowest model level) and at 10 m of altitude (where the
observations are sampled). Other panels show the mean 10 m ozone deposition
velocity in GEOS-Chem, the median Monin–Obukhov length <inline-formula><mml:math id="M68" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> in the GEOS-FP data
used to drive GEOS-Chem, and the mean mixed layer depth in the GEOS-FP data.
Days on which precipitation exceeds 1 mm in either the model or observations
are excluded. Local hour refers to solar time (maximum solar elevation at
noon). Vertical dashed lines at 06:00, 12:00, and 18:00 local time are to guide the
eye.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/12/3641/2019/gmd-12-3641-2019-f03.png"/>

      </fig>

      <p id="d1e1320">The poor model representation of the ozone diurnal cycle implies that the
model may err in the diurnal timing of MDA8 ozone. Figure 4 shows the
frequency distribution of the beginning of the 8 h interval for MDA8
ozone at the CASTNET sites on dry days, comparing the observations and the
model. The frequency distribution in the observations peaks sharply at 11:00 LT
(MDA8 window of 11:00–18:00 LT), consistent with the mean diurnal cycle of Fig. 3.
The model sampled at 65 m also has a maximum probability of MDA8 ozone
starting at 11:00 LT but a secondary maximum at 19:00 LT that is absent from
the observations. The latter conditions occur in the model when the
atmosphere becomes stable at 16:00 LT, decoupling 65 m from the surface
and the associated deposition. Under these conditions the model
concentration at 65 m remains high in the evening and at night. Correcting
the model calculation of MDA8 to use the 10 m ozone largely removes this
secondary maximum (Fig. 4) but shifts the peak occurrence of MDA8 ahead by
2 h (starting at 09:00 LT) because of the exaggerated model drop at 17:00 LT
when the model atmosphere becomes stable but ozone stomatal deposition is
still active (Fig. 3). The transition from a convective mixed layer to
stable nighttime conditions is difficult for models to capture and is an
active area of research (Lothon et al., 2014). The correlated timing with
stomatal closure<?pagebreak page3645?> further complicates the simulation of the day–night
transition in surface ozone.</p>
      <p id="d1e1324">Model error in the simulation of the ozone diurnal cycle due to insufficient
nighttime depletion thus induces a representation error when comparing to
MDA8 observations, as the MDA8 periods in the model do not correspond to the
same times of day as in the observations. This causes a positive bias in the
comparison. Another approach in model evaluation is to focus instead on
afternoon conditions, recognizing that the model inadequately simulates
ozone depletion in the shallow surface layer at night (e.g., Fiore et al.,
2002). Figure 1c compares the simulated and observed frequency
distributions of surface ozone at the CASTNET sites at 12:00–17:00 LT on dry days,
sampling the model at 10 m of altitude. The <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> ppb bias in the original model
comparison (panel b) is reduced to only <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> ppb. Focusing evaluation
on afternoon hours can be adequate for understanding general properties of
the model ozone budget, such as the response to changes in <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
emissions (Strode et al., 2015), because the stratified surface layer
represents only a small volume of atmosphere. However, the problem of
simulating the policy-relevant MDA8 surface ozone remains.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e1360">Timing of MDA8 ozone at the Southeast US CASTNET sites in
August–September 2013. The figure shows the frequency distributions of the
beginning hour of the 8 h period defining the MDA8 ozone value for each
day. Only dry days (24 h precipitation less than 1 mm) are included.</p></caption>
        <?xmltex \igopts{width=190.633465pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/12/3641/2019/gmd-12-3641-2019-f04.png"/>

      </fig>

</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <label>6</label><title>Implications</title>
      <p id="d1e1377">We identified three modeling problems biasing the comparison to observed
maximum daily 8 h average (MDA8) ozone for air quality applications: (1) vertical mismatch between the lowest model level and the altitude of the
observations, (2) insufficient vertical stratification and/or ozone loss
(e.g., non-stomatal dry deposition pathways) under rainy conditions or at
night, and (3) inadequate representation of the day–night transition to
stable conditions, leading to error in timing of the 8 h MDA8 window.
Problem (1) can be solved by using the parameterization of surface layer
turbulence implicit in the model simulation of dry deposition, although the
parameterization may underestimate the vertical gradient under stable
conditions. Finer vertical grid resolution of the surface layer in the
parent GEOS-5 dynamical model for GEOS-Chem could improve the representation
of the gradient. Problems (2) and (3) suggest the need for more research in
the dynamics of stable boundary layers and in the deposition of ozone to wet
surfaces and at night. Fine temporal consistency in the modeling of mixed
layer dynamics and chemical deposition fluxes across the day–night
transition is also important. Focusing model evaluation on dry afternoon
conditions circumvents these problems and is mostly adequate for general
testing of the model ozone chemistry. Further model evaluation with MDA8
ozone for air quality applications should be contingent on proper
representation of the ozone diurnal cycle.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e1384">PRISM temperature and precipitation data can be downloaded at <uri>http://www.prism.oregonstate.edu/historical/</uri> (PRISM, 2016). CASTNET observations are
available here: <uri>https://www.epa.gov/castnet</uri> (EPA, 2018). SEAC<inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>RS
aircraft observations are available here: <uri>https://www-air.larc.nasa.gov/cgi-bin/ArcView/seac4rs</uri> (SEAC4RS Science Team, 2013). The model code and
hourly output used in this analysis are available here: <ext-link xlink:href="https://doi.org/10.5281/zenodo.3343043" ext-link-type="DOI">10.5281/zenodo.3343043</ext-link> (Travis and Jacob, 2019).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e1411">KRT and DJJ designed this study and prepared the paper. KRT performed
the simulations and analyses.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e1417">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e1423">Thank you to Thomas Ryerson, Ilana Pollack, and Jeff Peischl for the use of
their ozone data from the NOAA <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> instrument. We acknowledge
Christoph Keller for his useful comments on calculating 10 m model ozone and
Melissa Puchalski for her help with using hourly CASTNET data. This research
was supported by the NASA Atmospheric Composition Modeling and Analysis
Program.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e1444">This research has been supported by the NASA Atmospheric Composition Modeling
and Analysis Program (grant no. NASA-NNX17AI67G).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e1451">This paper was edited by Christoph Knote and reviewed by three anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>Systematic bias in evaluating chemical transport models with maximum daily 8&thinsp;h average (MDA8) surface ozone for air quality applications: a case study with GEOS-Chem v9.02</article-title-html>
<abstract-html><p>Chemical transport models frequently evaluate their
simulation of surface ozone with observations of the maximum daily 8&thinsp;h
average (MDA8) concentration, which is the standard air quality policy
metric. This requires successful simulation of the surface ozone diurnal
cycle including nighttime depletion, but models often have difficulty
simulating this diurnal cycle for a number of reasons, including (1) vertical
grid structure in the surface layer, (2) timing of changes in mixed layer
dynamics and ozone deposition velocity across the day–night transition, (3) poor representation of nighttime stratification, and (4) uncertainties in ozone
nighttime deposition. We analyze the problem with the GEOS-Chem model,
taking as a representative case study the Southeast US during the NASA
SEAC<sup>4</sup>RS aircraft campaign in August–September 2013. The model is
unbiased relative to the daytime mixed layer aircraft observations but has a
mean +8&thinsp;ppb bias at its lowest level (65&thinsp;m) relative to MDA8 surface ozone
observations. The bias can be corrected to +5&thinsp;ppb by implicit sampling of
the model at the 10&thinsp;m altitude of the surface observations. The model does
not capture frequent observed occurrences of  &lt; 20&thinsp;ppb MDA8 surface
ozone on rainy days, possibly because of enhanced ozone
deposition to wet surfaces that is unaccounted for. Restricting the surface ozone evaluation to dry
days still shows inconsistencies with MDA8 ozone because of model errors in
the ozone diurnal cycle. Restricting the evaluation to afternoon ozone
completely removes the bias. We conclude that better representation of
diurnal variations in mixed layer dynamics and ozone deposition velocities
is needed in models to properly describe the diurnal cycle of ozone.</p></abstract-html>
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