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  <front>
    <journal-meta><journal-id journal-id-type="publisher">GMD</journal-id><journal-title-group>
    <journal-title>Geoscientific Model Development</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1991-9603</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-11-235-2018</article-id><title-group><article-title>The path to CAM6: coupled simulations with CAM5.4 and CAM5.5</article-title>
      </title-group><?xmltex \runningtitle{The path to CAM6: coupled simulations with CAM5.4 and CAM5.5}?><?xmltex \runningauthor{P.~A.~Bogenschutz et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Bogenschutz</surname><given-names>Peter A.</given-names></name>
          <email>bogenschutz1@llnl.gov</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Gettelman</surname><given-names>Andrew</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8284-2599</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Hannay</surname><given-names>Cecile</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Larson</surname><given-names>Vincent E.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Neale</surname><given-names>Richard B.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Craig</surname><given-names>Cheryl</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Chen</surname><given-names>Chih-Chieh</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Lawrence Livermore National Laboratory, Livermore, CA, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>National Center for Atmospheric Research, Boulder, CO, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>University of Wisconsin-Milwaukee, Milwaukee, WI, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Peter A. Bogenschutz (bogenschutz1@llnl.gov)</corresp></author-notes><pub-date><day>17</day><month>January</month><year>2018</year></pub-date>
      
      <volume>11</volume>
      <issue>1</issue>
      <fpage>235</fpage><lpage>255</lpage>
      <history>
        <date date-type="received"><day>27</day><month>May</month><year>2017</year></date>
           <date date-type="rev-request"><day>4</day><month>July</month><year>2017</year></date>
           <date date-type="rev-recd"><day>2</day><month>November</month><year>2017</year></date>
           <date date-type="accepted"><day>21</day><month>November</month><year>2017</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018.html">This article is available from https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018.html</self-uri><self-uri xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018.pdf</self-uri>
      <abstract>
    <p id="d1e146">This paper documents coupled simulations of two developmental
versions of the Community Atmosphere Model (CAM) towards CAM6.  The
configuration called CAM5.4 introduces new microphysics, aerosol,
and ice nucleation changes, among others to CAM.  The CAM5.5
configuration represents a more radical departure, as it uses an
assumed probability density function (PDF)-based unified cloud parameterization to replace the
turbulence, shallow convection, and warm cloud macrophysics in CAM.
This assumed PDF method has been widely used in the last decade in
atmosphere-only climate simulations but has never been documented
in coupled mode.  Here, we compare the simulated coupled climates of
CAM5.4 and CAM5.5 and compare them to the control coupled simulation
produced by CAM5.3.  We find that CAM5.5 has lower cloud forcing
biases when compared to the control simulations.  Improvements are
also seen in the simulated amplitude of the Niño-3.4 index,
an improved representation of the diurnal cycle of precipitation,
subtropical surface wind stresses, and double Intertropical
Convergence Zone biases.  Degradations are seen in Amazon
precipitation as well as slightly colder sea surface temperatures
and thinner Arctic sea ice.  Simulation of the 20th century results
in a credible simulation that ends slightly colder than the control
coupled simulation.  The authors find this is due to aerosol
indirect effects that are slightly stronger in the new version of
the model and propose a solution to ameliorate this.  Overall, in
these early coupled simulations, CAM5.5 produces a credible climate
that is appropriate for science applications and is ready for
integration into the National Center for Atmospheric Research's
(NCAR's) next-generation climate model.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e156">The Community Earth System Model <xref ref-type="bibr" rid="bib1.bibx27" id="paren.1"><named-content content-type="pre">CESM;</named-content></xref> is a
state-of-the-art climate model consisting of atmosphere, land, ocean,
and sea-ice components which exchanges information and fluxes from
each component via a coupler.  Formerly known as the Community Climate
System Model (CCSM), CESM is developed at the National Center for
Atmospheric Research (NCAR) in a collaboration between researchers and
students from universities, national laboratories, and other
institutions.  The CESM and CCSM have been used to study the climate
of the past, ranging from paleoclimate epochs to the recent past, and
to make projections of possible future climate change.</p>
      <p id="d1e164">The first version of the CCSM was released in
1996 <xref ref-type="bibr" rid="bib1.bibx7" id="paren.2"/>.  In the last 20 years, there have been
five official versions of NCAR's climate model, with the last two
known as CCSM4 <xref ref-type="bibr" rid="bib1.bibx17" id="paren.3"/> and CESM1 <xref ref-type="bibr" rid="bib1.bibx27" id="paren.4"/>, both of
which produced simulations for the fifth phase of the Coupled Model Intercomparison
Project <xref ref-type="bibr" rid="bib1.bibx58" id="paren.5"><named-content content-type="pre">CMIP5;</named-content></xref>.  Each successive
<inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mtext>CCSM</mml:mtext><mml:mo>/</mml:mo><mml:mtext>CESM</mml:mtext></mml:mrow></mml:math></inline-formula> release represents a climate model where
most (if not all) of the component models have upgraded versions from
their predecessor.</p>
      <p id="d1e193">With each successive upgrade to a climate model, the changes made in
each component model contribute to the change in the climate
simulation from the previous version.  This paper will focus on
changes to the climate simulation in the CESM model but where only
one component model is modified with upgraded physics.  Here, we will
focus on the atmosphere component known as the Community Atmosphere
Model (CAM).  CAM has evolved greatly over the past generations of
CCSM and CESM in terms of the physical parameterizations and dynamical
cores employed.  CCSM4 used CAM4 <xref ref-type="bibr" rid="bib1.bibx47" id="paren.6"/>, which was known
for its improved representation of El Niño–Southern Oscillation (ENSO) and relatively improved
representation of the Madden–Julian Oscillation (MJO).  CESM1 used
CAM5 <xref ref-type="bibr" rid="bib1.bibx46" id="paren.7"/>, which is notable for its improved
representation of low clouds as well as the first version of CAM to
include a microphysics and aerosol model sophisticated enough to be
able to simulate cloud–aerosol interactions with reasonable physical
fidelity.</p>
      <p id="d1e202">The purpose of this paper is to document coupled climate simulations
with snapshots of developmental versions of CAM, leading up to CAM6,
that will ultimately be used in CESM2.  More specifically, CAM6 will
differ from CAM5 in terms of the use of prognostic precipitation in
the microphysics, a four-mode aerosol model, and updated ice
nucleation schemes.  In addition, CAM6 will also replace the boundary
layer, shallow convective, and cloud macrophysical parameterizations.
With such sweeping changes made to the treatment of physical
parameterizations, the model development and coupled simulation tests
were broken into various subversions to allow for an incremental
assessment of physics changes.</p>
      <p id="d1e206">Perhaps the most radical departure from tradition in CAM6, compared to
other CMIP5 global climate models (GCMs) and previous versions of CAM, is the treatment of
cloud and turbulence physics.  Traditionally, most atmospheric GCMs
employ “separate” physics parameterizations that are responsible for
simulating a particular process.  CESM2 will contain a version of CAM
that will employ the so-called “assumed probability density function (PDF)”
method <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx35" id="paren.8"/>.  The assumed PDF method is a
third order turbulence closure that is centered around a multivariate
PDF that also serves as a cloud
parameterization.  Oftentimes, the functional form of the PDF is
selected to be a double Gaussian, to accommodate the parameterization
of stratiform clouds as well as convective clouds.  Thus, the assumed
PDF is often referred to as a “unified” parameterization, meaning
that it has the capacity to parameterize various atmospheric processes
and regimes (i.e., boundary layer process, warm cloud macrophysics, and
shallow convective processes) with one parameterization call.</p>
      <p id="d1e212">The last decade has seen the advent of the assumed PDF method used in
numerical models, particularly cloud resolving models (CRMs) and GCMs.
<xref ref-type="bibr" rid="bib1.bibx11" id="text.9"/>, <xref ref-type="bibr" rid="bib1.bibx36" id="text.10"/>, and <xref ref-type="bibr" rid="bib1.bibx5" id="text.11"/>
demonstrated that idealized CRM simulations of boundary layer clouds
with the assumed PDF method were shown to be much improved when
compared to the CRMs with low-order closure turbulence
parameterizations. <xref ref-type="bibr" rid="bib1.bibx12" id="text.12"/> were the first to implement the
assumed PDF method into a global model, which was the
super-parameterized version of the Community Atmosphere Model
<xref ref-type="bibr" rid="bib1.bibx33" id="paren.13"><named-content content-type="pre">SP-CAM,</named-content></xref>.  They showed that in short
simulations with prescribed sea surface temperatures (SSTs) the version of SP-CAM with an
assumed PDF method implemented in the embedded CRM was able to greatly
improve the simulation of marine stratocumulus, which was a persistent
problem in the default version of SP-CAM.
However, it was not until the work of <xref ref-type="bibr" rid="bib1.bibx6" id="text.14"/>
and <xref ref-type="bibr" rid="bib1.bibx24" id="text.15"/> when serious efforts to test and implement the
assumed PDF method into conventionally parameterized GCMs, that are
used in Climate Model Intercomparison Project (CMIP) simulations,
first began.  The assumed PDF method implemented was the Cloud Layers
Unified by Bi-normals <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx35" id="paren.16"><named-content content-type="pre">CLUBB;</named-content></xref>
parameterization into NCAR's CAM <xref ref-type="bibr" rid="bib1.bibx6" id="paren.17"><named-content content-type="pre">coupling described
in </named-content></xref> and Geophysical Fluid Dynamic Laboratory's
(GFDL's) Atmosphere Model version 3 (AM3; Donner et al.,
2011; coupling described in <xref ref-type="bibr" rid="bib1.bibx24" id="author.18"/>,
<xref ref-type="bibr" rid="bib1.bibx24" id="year.19"/>).  In both CAM and AM3, the implementation of CLUBB
represents a radical departure from traditional physical
parameterizations used in GCMs.  The CLUBB parameterization replaces
the planetary boundary layer (PBL), shallow convection, and cloud
macrophysical parameterization schemes in both models and represents a
“unified” parameterization that is responsible for treating boundary
layer clouds and shallow convection with one parameterization.  This
has many theoretical and scientific advantages compared to traditional
physical packages made up of several different schemes which may or
may not be compatible with one another.  Indeed,
both <xref ref-type="bibr" rid="bib1.bibx6" id="text.20"/> and <xref ref-type="bibr" rid="bib1.bibx24" id="text.21"/> demonstrate an
improved performance for the simulation of intermediate types of
regimes, such as the stratocumulus to cumulus transition, which is
represented by one turbulence parameterization in the CLUBB version
but typically represented by three separate parameterizations with
default GCM physics.  While NCAR's next-generation version of CAM will
include the CLUBB parameterization as the default scheme, GFDL's
next-generation version of AM3 will not include CLUBB.</p>
      <p id="d1e262">Following the work of <xref ref-type="bibr" rid="bib1.bibx12" id="text.22"/>, <xref ref-type="bibr" rid="bib1.bibx6" id="text.23"/>,
and <xref ref-type="bibr" rid="bib1.bibx24" id="text.24"/>, there have been additional efforts to implement
the assumed PDF method into super-parameterized and conventional GCMs
in similar manners
<xref ref-type="bibr" rid="bib1.bibx13" id="paren.25"><named-content content-type="pre">i.e.,</named-content><named-content content-type="post"><xref ref-type="bibr" rid="bib1.bibx61" id="author.26"/>; <xref ref-type="bibr" rid="bib1.bibx61" id="year.27"/></named-content></xref>.  In
addition, some work has examined the performance of CLUBB serving as a
deep convection scheme, thereby serving as a completely unified
parameterization of turbulence and clouds. <xref ref-type="bibr" rid="bib1.bibx25" id="text.28"/> tested such
a model for the AM3 version of CLUBB and found that CLUBB serving as a
deep convection scheme resulted in a reasonable mean state climate
with improved tropical variability when compared the baseline AM3
model.  However, they also found that the simulation of tropical water
vapor and ice clouds in the midlatitudes was degraded.  The work
of <xref ref-type="bibr" rid="bib1.bibx59" id="text.29"/> used CLUBB as a deep convection scheme in
CAM but also tightly integrated the interface between clouds and
microphysics by drawing Monte Carlo samples of subgrid variability of
temperature, water vapor, cloud liquid, and cloud ice, and feeding the
sample points into the microphysics scheme.  This technique is also
commonly referred to as the “sub-column” approach.  Their results
showed a general improvement in model skill compared to the baseline
CAM5 model for most variables but a degradation in the skill of
precipitation.</p>
      <p id="d1e292">There is no denying that the development activity, implementation, and
evaluation of assumed PDF methods in the last decade have been on an
exciting upswing.  In fact, the collaborative efforts between authors
of the aforementioned works and this current work, have culminated in
an assumed PDF-based scheme (CLUBB) being selected as default physics
for CAM6 and hence CESM2.  Thus far, one commonality of all published
work involving implementation of assumed PDF methods in GCMs has
focused on simulations using prescribed SSTs.  While this is a
convenient and necessary first step in parameterization implementation
and testing in a global model, the final test of parameterization
development is validation in a fully coupled GCM.  In addition, this
is the only way a truly apples-to-apples comparison can be made with
the baseline GCM, which was likely tuned to produce scientifically
credible coupled simulations.  A coupled simulation with a new cloud
or convective parameterization must not only simulate a good mean
state climate but also produce a stable pre-industrial coupled
simulation, reasonable variability for the ENSO, realistic sea ice, and a credible historical
simulation of the 20th century.</p>
      <p id="d1e295">This paper will document the coupled climate simulations for two
developmental versions of CAM, on the path towards CAM6, compared to
CESM1.  The first developmental version will include all of the
“non-CLUBB” physics changes to CAM (the prognostic precipitation
microphysics, four-mode aerosol model, ice nucleation, etc.).  The
second developmental version will turn on the CLUBB parameterization
in addition to the changes made in the first developmental version.
It should be noted that the purpose of this paper is not to document
the coupled performance of CAM6 or CESM2 model.  The finished CESM2
model will ultimately include a myriad of changes to the ocean, land,
and sea-ice models, for example, in addition to tuning and structural
changes/upgrades in the atmosphere model to ensure stable
pre-industrial and credible 20th century simulations.  Thus, this
paper serves to document the changes that occur in the coupled system
when major changes are implemented into the CAM physics.  This paper
will be organized as follows: Sect. 2 will give a description of the
model versions used in this study, while Sect. 3 will describe the
model setup and configurations.  Results will be presented in Sect. 4
and will focus on the mean state climate, variability, and credibility
of the 20th century simulation.  Finally, Sect. 5 will provide a
summary of conclusions and a general discussion.</p>
</sec>
<sec id="Ch1.S2">
  <title>Model descriptions</title>
<sec id="Ch1.S2.SS1">
  <title>Atmosphere model</title>
      <p id="d1e309">The standard CAM5 physics package <xref ref-type="bibr" rid="bib1.bibx46" id="paren.30"/>, which is used in
the control model for this paper, will be referred to as CAM5.3, which
is the atmosphere component currently used in CESM version 1.  These
are the physical parameterizations that were used for the CESM CMIP5
submission in addition to the CESM large ensemble
<xref ref-type="bibr" rid="bib1.bibx30" id="paren.31"><named-content content-type="pre">LE;</named-content></xref>.  CAM5 represents a nearly complete overhaul in
physical parameterization options from CAM4, with the exception of the
deep convection scheme <xref ref-type="bibr" rid="bib1.bibx64 bib1.bibx45 bib1.bibx54" id="paren.32"/>.  The
boundary layer scheme in CAM5 is based on downgradient diffusion of
moist conserved variables <xref ref-type="bibr" rid="bib1.bibx8" id="paren.33"><named-content content-type="pre">UWMT;</named-content></xref>, the shallow
convection scheme follows that of <xref ref-type="bibr" rid="bib1.bibx50" id="text.34"/> (UWSC), while cloud
macrophysics is computed according to <xref ref-type="bibr" rid="bib1.bibx51" id="text.35"/>.  The
<xref ref-type="bibr" rid="bib1.bibx44" id="text.36"/> two-moment stratiform microphysics scheme for both
liquid and ice is used in CAM5, using the ice closures as described in
<xref ref-type="bibr" rid="bib1.bibx20" id="text.37"/>.  Aerosols are predicted according to
<xref ref-type="bibr" rid="bib1.bibx38" id="text.38"/> and linked to the microphysics through the
parameterization of liquid and ice activation of cloud drops and
crystals on aerosols <xref ref-type="bibr" rid="bib1.bibx20" id="paren.39"/>.</p>
      <p id="d1e347">We will also examine the coupled climate simulations for the first
developmental version of CAM towards CAM6, known as CAM5.4.  The
purpose of CAM5.4 is to include physical upgrades to the CAM5 family
and assess their climate effects, before CLUBB was turned on for the
system.  In addition, at the time of CAM5.4 development, it was unclear
if CLUBB would be included into future versions of CAM as the default
scheme, as CAM-CLUBB coupled simulations were still being evaluated.
Changes from CAM5.3 to CAM5.4 include an upgrade from a diagnostic
precipitation scheme <xref ref-type="bibr" rid="bib1.bibx44" id="paren.40"/> to a prognostic
precipitation scheme <xref ref-type="bibr" rid="bib1.bibx18" id="paren.41"/>, a new ice nucleation
scheme <xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx56" id="paren.42"/> to better represent mixed-phase and
cirrus ice nucleation, an upgrade from the three-mode Modal Aerosol Module
(MAM3) to a four-mode version (MAM4) that includes the treatment of
black carbon <xref ref-type="bibr" rid="bib1.bibx39" id="paren.43"/>, the use of an additional two vertical
layers near model top for consistent level treatment between CAM and
the Whole Atmosphere Community Climate Model (WACCM), an improved
treatment of the dust emissions size distributions and dust optical
properties <xref ref-type="bibr" rid="bib1.bibx2" id="paren.44"/>, a fix to the energy formulation in CAM
<xref ref-type="bibr" rid="bib1.bibx62" id="paren.45"/>, a change to the vertical remapping from energy
to temperature in the finite volume dynamical core, and consistent
topography files for the finite volume and spectral element dynamical
cores.</p>
      <p id="d1e369">The CAM5.5 version of the model uses all the upgrades developed for
CAM5.4; however, the shallow convection, planetary boundary layer, and
warm cloud macrophysics schemes are replaced with the CLUBB
parameterization <xref ref-type="bibr" rid="bib1.bibx6" id="paren.46"/>.  Because CLUBB is currently
a warm cloud parameterization, ice cloud fraction and coupling are
closed using the current relative-humidity-based scheme in CAM, as
described by <xref ref-type="bibr" rid="bib1.bibx20" id="text.47"/> and <xref ref-type="bibr" rid="bib1.bibx6" id="text.48"/>.  Besides
the changes to the physical parameterizations, CAM5.5 represents an
inherently different coupling with the microphysics.  For example, in
CAM5.3 and CAM5.4, there are three separate microphysics schemes: the
double-moment scheme for stratiform clouds, while each of the
<xref ref-type="bibr" rid="bib1.bibx64" id="text.49"/> (ZM) deep convection scheme and <xref ref-type="bibr" rid="bib1.bibx50" id="text.50"/>
shallow convection scheme contains its own simplified single-moment
treatment of microphysics.</p>
      <p id="d1e387">In CAM5.5, since CLUBB is a unified parameterization, the
double-moment microphysics is applied for both the stratiform and
shallow convection, although the simplified single-moment microphysics
is retained for the ZM deep convection.  Therefore, not only does
CAM5.5 represent a more unified treatment of clouds and microphysics
but also a more consistent treatment of cloud–aerosol interactions. In
addition, CAM5.5 couples CLUBB and the microphysics together with the
same time step, as opposed to the “sequentially split” method that
is traditionally employed in CAM5.3, CAM5.4, and most other GCMs
<xref ref-type="bibr" rid="bib1.bibx19" id="paren.51"><named-content content-type="pre">as described in</named-content></xref>.  In other words, each time
CLUBB is called with its 5 min time step, the microphysics is
called and this loop continues until the 30 min CAM physics time
step has expired.  This is to ensure that cloud water is not entirely
depleted in a single time step, which is often the case with the long
time steps commonly employed with coarse-grid GCMs.
Table <xref ref-type="table" rid="Ch1.T1"/> describes the differences in physical
parameterizations between CAM5.3, CAM5.4, and CAM5.5.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p id="d1e401">Summary of physics used in each model version.  Citation
key: ZM1995 is Zhang and McFarlane (1995), PB2009 is Park
and Bretherton (2009), BP2009 is Bretherton and Park (2009),
P2014 is Park et al. (2014), MG1 is Morrison and
Gettelman (2008), MG2 is Gettelman and
Morrison (2014),
G2010 is <xref ref-type="bibr" rid="bib1.bibx20" id="text.52"/>, CLUBB is Golaz et al. (2002a),
MAM3 is <xref ref-type="bibr" rid="bib1.bibx38" id="text.53"/>, MAM4 is Liu et al. (2015), and RRTMG is <xref ref-type="bibr" rid="bib1.bibx29" id="text.54"/>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Physics</oasis:entry>  
         <oasis:entry colname="col2">CAM5.3</oasis:entry>  
         <oasis:entry colname="col3">CAM5.4</oasis:entry>  
         <oasis:entry colname="col4">CAM5.5</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Deep convection</oasis:entry>  
         <oasis:entry colname="col2">ZM1995</oasis:entry>  
         <oasis:entry colname="col3">ZM1995</oasis:entry>  
         <oasis:entry colname="col4">ZM1995</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Shallow convection</oasis:entry>  
         <oasis:entry colname="col2">PB2009</oasis:entry>  
         <oasis:entry colname="col3">PB2009</oasis:entry>  
         <oasis:entry colname="col4">CLUBB</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">PBL</oasis:entry>  
         <oasis:entry colname="col2">BP2009</oasis:entry>  
         <oasis:entry colname="col3">BP2009</oasis:entry>  
         <oasis:entry colname="col4">CLUBB</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Warm cloud macrophysics</oasis:entry>  
         <oasis:entry colname="col2">P2014</oasis:entry>  
         <oasis:entry colname="col3">P2014</oasis:entry>  
         <oasis:entry colname="col4">CLUBB</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Cold cloud macrophysics</oasis:entry>  
         <oasis:entry colname="col2">G2010</oasis:entry>  
         <oasis:entry colname="col3">G2010</oasis:entry>  
         <oasis:entry colname="col4">G2010</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Microphysics</oasis:entry>  
         <oasis:entry colname="col2">MG1</oasis:entry>  
         <oasis:entry colname="col3">MG2</oasis:entry>  
         <oasis:entry colname="col4">MG2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Aerosol</oasis:entry>  
         <oasis:entry colname="col2">MAM3</oasis:entry>  
         <oasis:entry colname="col3">MAM4</oasis:entry>  
         <oasis:entry colname="col4">MAM4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Radiation</oasis:entry>  
         <oasis:entry colname="col2">RRTMG</oasis:entry>  
         <oasis:entry colname="col3">RRTMG</oasis:entry>  
         <oasis:entry colname="col4">RRTMG</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e569">It should be noted that CAM5.4 and CAM5.5 were tuned slightly
differently in order to achieve top-of-atmosphere (TOA) radiation
balances.  For instance, CAM5.4 in its atmosphere-only tuned state
produced a TOA radiation imbalance of <inline-formula><mml:math id="M2" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.4 <inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the
first 10 years of a pre-industrial control run.  Therefore, a tuning
decision had to be made, and to compensate for this imbalance a
parameter that controls the autoconversion threshold of ice to snow
in the double-moment microphysics (<inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mtext>cs</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) was increased to
produce more high clouds to help warm the climate system.  However,
when the CLUBB parameterization was run on top of an untuned coupled
version of CAM5.4 the TOA radiation imbalance was
<inline-formula><mml:math id="M5" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>1.5 <inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>; therefore, tuning decisions independent of
those made in CAM5.4 had to be made.</p>
      <p id="d1e631">CAM5.5 tuning involved both a decrease to the <inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mtext>cs</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
parameter to reduce high-level clouds as well as a modification to
some CLUBB parameters to increase low cloud cover to cool the climate.
Chiefly, the main CLUBB parameter that is tuned for radiation balance
is the “<inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mtext>coef</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> parameter”, which influences the
width of the individual Gaussian components of <inline-formula><mml:math id="M9" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> relative to the
width of the overall PDF of <inline-formula><mml:math id="M10" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx34" id="paren.55"/>.  Decreasing the
gamma parameter helps to decrease the skewness of vertical velocity
and scalars, making the layer less cumuliform and more stratiform,
with increased low-cloud cover.  Implications of these tuning
parameter decisions will be discussed in Sect. 4.</p>
      <p id="d1e673">CAM5.4 and CAM5.5 were tuned in the development process in
atmosphere-only simulations to achieve the best possible simulations in those
configurations.  However, in coupled mode, CAM5.4 and CAM5.5 were only
tuned at this point to achieve (1) a TOA radiation imbalance of <inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mo>|</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, and (2) a stable (non-drifting)
pre-industrial climate.  Of the tuning parameters that are shared
between CAM5.4 and CAM5.5, the two configurations only differ in their
value of <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mtext>cs</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.  CAM5.4 has a value of 250 <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
while CAM5.5 has a value of 160 <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>.  For the sake of
computational resources, a more comprehensive tuning will occur once
the new component models have been integrated into CESM2 and is
prepared for CMIP6 simulations.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Component models</title>
      <p id="d1e744">The other component models used in this study are the same between the
different configurations of atmosphere models used.  The Community
Land Model <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx48" id="paren.56"><named-content content-type="pre">CLM;</named-content></xref> version 4 is used
to represent terrestrial ecosystems in the climate system.  The sea-ice
component utilizes version 4 of the Los Alamos National Laboratory
(LANL) Community Ice Code <xref ref-type="bibr" rid="bib1.bibx26" id="paren.57"><named-content content-type="pre">CICE4;</named-content></xref>, while the ocean
component uses the LANL Parallel Ocean Program version 2
<xref ref-type="bibr" rid="bib1.bibx57" id="paren.58"><named-content content-type="pre">POP;</named-content></xref>.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Model simulations</title>
      <p id="d1e769">In this section, we will compare and assess the performance of the CAM5.3,
CAM5.4, and CAM5.5 runs in coupled mode.  This includes a comparison of
pre-industrial and 20th century historical runs.  All simulations
presented in this section were run using 1<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> horizontal
resolution and the finite volume (FV) dynamical core.
Table <xref ref-type="table" rid="Ch1.T2"/> lists the coupled simulations performed
with each configuration.  The CESM-CAM5.3 simulations represent those
used in the CESM large ensemble <xref ref-type="bibr" rid="bib1.bibx30" id="paren.59"/> and includes a
2100-year pre-industrial control simulation.  From the
CESM-CAM5.3 1850 control simulation, the first member of the CESM LE
was started at year 402.  The remaining members of the CESM LE were
started from the first member at year 1920 by applying round-off
temperature perturbations.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p id="d1e789">Summary of coupled simulations performed.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Model</oasis:entry>  
         <oasis:entry colname="col2">Pre-industrial</oasis:entry>  
         <oasis:entry colname="col3">20th century</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">CESM-CAM5.3</oasis:entry>  
         <oasis:entry colname="col2">2100 years</oasis:entry>  
         <oasis:entry colname="col3">1850 to 2005: 1 member</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">1920 to 2005: 37 members</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CESM-CAM5.4</oasis:entry>  
         <oasis:entry colname="col2">120 years</oasis:entry>  
         <oasis:entry colname="col3">Not performed</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CESM-CAM5.5</oasis:entry>  
         <oasis:entry colname="col2">200 years</oasis:entry>  
         <oasis:entry colname="col3">1850 to 2005: 1 member</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e867">The CESM-CAM5.4 pre-industrial simulation was initialized from the
CESM-CAM5.3 control run at year 402 and run for approximately
106 years.  Since CAM5.4 was seen as a transitional model in
the CAM development process, a 20th century run was not performed with
this configuration.  Like the CESM-CAM5.4 simulation, the CESM-CAM5.5
pre-industrial control simulation was also initialized from the
CESM-CAM5.3 control run at year 402 and was run for 200 years.
At year 150, a single 20th century member was started.  We recognize
the relative shortness in the simulation length of the CAM5.4 and
CAM5.5 control runs; however, since both simulations achieve a
reasonable stable equilibrium by the end of their runs, we would not
expect the simulated mean climate results to change much with a longer
simulation.</p>
</sec>
<sec id="Ch1.S4">
  <title>Results</title>
      <p id="d1e876">Section 4.1 will focus on the simulated mean state climates produced
by the three configurations of CAM in coupled mode.  For the sake of
completeness and continuity, comparisons between CAM5.3, CAM5.4, and
CAM5.5 will focus on the pre-industrial control runs.  Section 4.2,
4.3, and 4.4 will present results on the ocean meridional overturning
circulation, the El Niño–Southern Oscillation, and the Madden–Julian
Oscillation, respectively.  In Sect. 4.5, results and implications of
the historical run performed for CAM5.5 will also be presented.</p>
<sec id="Ch1.S4.SS1">
  <title>Mean state climate</title>
      <p id="d1e884">Figure <xref ref-type="fig" rid="Ch1.F1"/> displays the surface temperature evolution from the
1850 fully coupled pre-industrial control run for CESM-CAM5.3 (i.e., the
control simulation used for the CESM LE), CESM-CAM5.4, and CESM-CAM5.5 for
the first 200 years of integration. The CESM-CAM5.3 run reaches a reasonable
equilibrium after about 90 years, whereas the CESM-CAM5.4 run stabilizes
after about 60 years. The CESM-CAM5.3 run takes longer to stabilize because
it was initialized from present-day Levitus observations. CESM-CAM5.5 has a
longer spin-up period than CESM-CAM5.4 but appears to reach reasonable
equilibrium after 100 years. All three simulations achieve a top-of-model
radiation imbalance of <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mo>|</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, which is what we strive
for in these pre-industrial control runs. Both the CAM5.4 and CAM5.5
simulations appear to stabilize at a temperature slightly warmer than the
CAM5.3 control runs.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e922">Evolution of the globally averaged surface temperature for
the first 200 years of the pre-industrial control run for
CESM-CAM5.3 (black curve, CESM large ensemble), CESM-CAM5.4 (blue
curve), and CESM-CAM5.5 (red curve).  CESM-CAM5.4 was only run for
106 years.</p></caption>
          <?xmltex \igopts{width=179.252362pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f01.png"/>

        </fig>

      <p id="d1e931">First, we will explore the successive differences in each model
version by focusing on the cloud radiation biases.  The simulated
shortwave cloud forcing (SWCF) biases, computed relative to the Clouds
and the Earth's Radiant Energy System – Energy Balanced and Filled
<xref ref-type="bibr" rid="bib1.bibx40" id="paren.60"><named-content content-type="pre">CERES-EBAF;</named-content></xref> can be seen in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>.  These figures represent the 25-year
climatological averages from a stable period in each simulation.  The
overall results for the analysis shown in this paper do not depend on
the period selected for the averaging for any simulation, provided
that period occurs after the model reaches a reasonable equilibrium
(not shown).  It is important to note that we are comparing
pre-industrial model simulations to present-day observations.  Thus,
we expect there to be a bit of an offset between the two due to
positive cloud feedbacks in a warmer world, concentrated in the
Northern Hemisphere.  With each successive model version, there is
about a  2 <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> reduction in the root mean squared error
(RMSE) score for SWCF.  In addition, CESM-CAM5.4 and CAM5.5
demonstrate modest improvements in the pattern correlation coefficient
over CESM-CAM5.3.  CESM-CAM5.3 contains large errors over the Southern
Ocean, in the subtropical stratocumulus to cumulus transition areas,
and over the tropical continents.  These have all been longstanding
biases in CESM and most previous generations of the CCSM.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p id="d1e961">Shortwave cloud forcing biases as computed relative to
CERES-EBAF for (top) CESM-CAM5.3 (years 402 to 426), (middle)
CESM-CAM5.4 (years 75 to 100), and (bottom) CESM-CAM5.5
(years 100 to 125) for the pre-industrial control run.  Each
configuration displays the difference from the observed mean,
root mean squared error, and pattern correlation coefficient.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f02.png"/>

        </fig>

      <p id="d1e970">With the introduction of CAM5.4, there is a 50 % reduction in the
SWCF positive biases over the Southern Ocean, centered around
60<inline-formula><mml:math id="M20" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.  The bias in CAM5.3 exists primarily because low-level
clouds contain insufficient amounts of supercooled
liquid <xref ref-type="bibr" rid="bib1.bibx31" id="paren.61"/>.  This bias has been greatly ameliorated due to
the new ice nucleation scheme <xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx56" id="paren.62"/> as well as the
new prognostic microphysics scheme <xref ref-type="bibr" rid="bib1.bibx18" id="paren.63"/>.  Previous
work <xref ref-type="bibr" rid="bib1.bibx28" id="paren.64"/> suggests that an improvement in the Southern
Ocean SWCF biases could potentially lead to an improvement in the
simulated double Intertropical Convergence Zone (ITCZ) bias, which we
will discuss further in this section.</p>
      <p id="d1e994">Going to CAM5.5 physics we see a further reduction in the global SWCF
RMSE.  These improvements appear to come from the tropical continents
where there is a reduction in the amount of reflected shortwave
radiation.  As will be shown later, it appears the reduction of these
biases is due to a shift in timing of the most intense convection to
later in the afternoon, when the Sun angle is lower.  In addition,
there are also improvements seen in the transition from stratocumulus
to cumulus, whereas both CAM5.3 and CAM5.4 appear to transition a bit
too abruptly, CAM5.5 tends to have a more gradual transition.  This is
generally in agreement with the prescribed SST results seen
in <xref ref-type="bibr" rid="bib1.bibx6" id="text.65"/>; however, we note that there are some
differences compared to that work.</p>
      <p id="d1e1000">The simulated biases for the longwave cloud forcing (LWCF), also
computed relative to CERES-EBAF observations, are displayed in
Fig. <xref ref-type="fig" rid="Ch1.F4"/>.  While there are modest
improvements in RMSE for each successive configuration, the
correlation coefficient is the same for each model configuration.
CAM5.3 contains longstanding biases of an underestimate of LWCF in the
midlatitudes and an overestimate in the tropics, which is partially
due to biases related to the double ITCZ problem.  CAM5.4 produces a
global mean of LWCF that is most comparable to CERES-EBAF
observations; however, this is mostly due to compensating errors in the
regional biases.  While CAM5.4 improves the midlatitude bias in the
storm tracks, there is a large positive bias over the tropical oceans.
This bias is largely due to the tuning of the autoconversion from ice
to snow parameter (<inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mtext>cs</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) in order to achieve a TOA
radiation balance, as demonstrated in a series of experiments (not
shown; Cecile Hannay, personal communication).  With CAM5.5, the global
mean LWCF is more comparable to observations than CAM5.3 but lower
than CAM5.4.  However, in this configuration, the large positive biases
seen in the tropics in CAM5.4 are somewhat ameliorated in CAM5.5,
which is responsible for the slightly lower RMSE score.</p>
      <p id="d1e1016">The zonal averages and differences from observations for SWCF and LWCF
are illustrated in Fig. <xref ref-type="fig" rid="Ch1.F3"/>.  Here, the
reduction of the Southern Ocean SWCF biases near 60<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S is
evident for CAM5.4 and CAM5.5, as is the reduction of tropical SWCF
biases for CAM5.5.  The zonal mean differences for LWCF show reduced
negative/positive biases compared to CAM5.3/CAM5.4 for CAM5.5.
However, a negative SWCF bias emerges near 45<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S for both
CAM5.4 and CAM5.5, indicative of clouds that are too reflective at
these latitudes.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e1042">Zonal averages of the shortwave <bold>(a)</bold> and longwave
<bold>(b)</bold> cloud forcing for model simulations and CERES-EBAF
observations.  Zonal average differences from CERES-EBAF
observations displayed on the bottom row.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f03.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p id="d1e1059">Same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for longwave cloud
forcing biases.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f04.png"/>

        </fig>

      <p id="d1e1070">Precipitation biases, computed relative to the Global Precipitation
Climatology Project <xref ref-type="bibr" rid="bib1.bibx1" id="paren.66"><named-content content-type="pre">GPCP;</named-content></xref>, can be seen in
Fig. <xref ref-type="fig" rid="Ch1.F5"/>.  Unlike the cloud forcing biases, where
the errors improved with each successive model version, the skill for
precipitation remains generally unchanged for all models.  This is
also true for the pattern correlation coefficient between the three
configurations.  However, there are notable differences in regional
biases between the three configurations.  CESM-CAM5.3 has an obvious
double ITCZ bias in the Southern Hemisphere tropical Pacific Ocean
and this bias is worsened in the CAM5.4 version.  This is interesting
because <xref ref-type="bibr" rid="bib1.bibx28" id="text.67"/> identified a potential link between Southern
Ocean cloud biases and double ITCZ biases in CMIP5 models, with the idea
being that a model with minimal Southern Ocean cloud biases would
mitigate the double ITCZ due to global energy arguments.  CESM-CAM5.4
shows a great improvement of the Southern Ocean SWCF biases
(Fig. <xref ref-type="fig" rid="Ch1.F2"/>); however, it also shows a worsened double
ITCZ bias. <xref ref-type="bibr" rid="bib1.bibx31" id="text.68"/> show that a version of CAM5.3 with reduced
Southern Ocean cloud biases did not result in an improved double ITCZ
bias because the northward cross-equatorial heat transports reductions
occurring primarily in the ocean and not the atmosphere.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p id="d1e1090">Same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for precipitation
biases computed relative to GPCP observations.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f05.png"/>

        </fig>

      <p id="d1e1101">The CESM-CAM5.5 configuration does show a modest reduction in the double ITCZ
bias, both in the Atlantic and Pacific oceans, compared to the CAM5.4 and
CAM5.3 versions of the model. We note that all tuning simulations we
performed with CAM5.5 (not shown) resulted in a reduced double ITCZ bias of
varying degrees when compared to CAM5.3 and CAM5.4. Thus, it does not appear
that this was achieved simply due to happenstance. Other regions of improved
precipitation in CAM5.5 can be found over the subtropics, the Atlantic deep
convective regions, and Australia. There are also regional degradations in
CAM5.5, such as over the tropical Pacific warm pool, the Indian Ocean, and the maritime continent.</p>
      <p id="d1e1105">The most notable bias for CAM5.5 is over tropical South America where
precipitation is greatly reduced compared to observations and CAM5.3
and CAM5.4.  It is interesting to note that the coupled simulation
precipitation results for CAM5.5 are not dissimilar from those
presented in the prescribed SST study of <xref ref-type="bibr" rid="bib1.bibx6" id="text.69"/>, with
the exception being over the Amazon, hinting at a possible feedback
between moisture transport and the Pacific and Atlantic SSTs with this
region <xref ref-type="bibr" rid="bib1.bibx43" id="paren.70"/>.  However, an examination of the
large-scale circulation over the area (not shown) provided no
significant differences between the CAM5.3 and CAM5.5 simulations,
suggesting that the difference in precipitation simulation may not be
caused by biases induced to the large-scale circulation.</p>
      <p id="d1e1114">For a more in-depth look at the precipitation biases over the Amazon for
CAM5.5, we examine the diurnal cycle of precipitation for CAM5.3 and CAM5.5
from the pre-industrial control runs. We note that although CAM5.4 is not
included in this analysis, because sufficient output from the pre-industrial
control run was not supplied, examination of the diurnal cycle of
precipitation for CAM5.4 in shorter prescribed SST simulations has been
performed and the behavior was shown to be nearly identical to that of
CAM5.3. It is known that GCMs struggle to simulate the timing and intensity
of precipitation <xref ref-type="bibr" rid="bib1.bibx16" id="paren.71"/>. Fig <xref ref-type="fig" rid="Ch1.F6"/> shows this is
true for CESM-CAM5.3 over the tropical continents for
December–January–February (DJF) and June–July–August (JJA), with the peak
precipitation occurring around noon, whereas the Tropical Rainfall Measuring
Mission (TRMM; Huffman et al., 2007) observations generally show a peak
around 19:00 LT (local time). Thus, the CAM5.3 simulation of precipitation
is tied too closely to the peak of solar insolation. The CAM5.5
representation, on the other hand, shows a large improvement when compared to
CAM5.3, with the peak precipitation generally occurring around 17:00 LT. The
reason for this improvement appears to be coming from the CLUBB
parameterization, which is responsible for the growth of the boundary layer
and mid-morning and early afternoon shallow convection. It is important to
note that the improved simulation of the diurnal cycle has been a robust
feature of CLUBB in every development coupled and atmosphere-only simulation.
The CLUBB unified parameterization is able to successfully simulate a gradual
transition of these regimes and prevent the deep convective scheme from
firing off too
early.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e1124">Diurnal cycle of precipitation maps for TRMM observations
<bold>(a, b)</bold>, CESM-CAM5.3 <bold>(c, d)</bold>, and CESM-CAM5.5
<bold>(e, f)</bold> for December, January, February (DJF; <bold>a, c, e</bold>) and June, July, August (JJA; <bold>b, d, f</bold>).  The
color hue denotes the local time of day of the maximum
precipitation rate, while the shading denotes the intensity of
the precipitation.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f06.png"/>

        </fig>

      <p id="d1e1148">Figure <xref ref-type="fig" rid="Ch1.F7"/> (bottom) shows the composite of
the precipitation over Africa and the Amazon for the DJF season for
CAM5.3 and CAM5.5.  Both CAM5.3 and CAM5.5 underestimate the peak
precipitation rate over the Amazon when compared to the observations;
however, CAM5.3 begins to precipitate much too early in the day
compared to the observed time.  Therefore, CAM5.3 has a better mean
state bias in the Amazon, but for the wrong reasons, since it begins
to precipitate too early but ends at approximately the same time as
CAM5.5.  Improvements to CAM5.5 mean precipitation should therefore
focus on increasing the intensity and duration of the precipitation,
since both CAM5.3 and CAM5.5 stop precipitating too early.  In
addition, improvements to the JJA season precipitation for CAM5.5 will
also help to ameliorate climatological biases in this region.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e1155">Timing composites of the diurnal cycle of precipitation
for TRMM observations (black curves), CESM-CAM5.3 (blue curves),
and CESM-CAM5.5 (red curves) for DJF (<bold>a</bold> and <bold>c</bold>)
and JJA (<bold>b</bold> and <bold>d</bold>).  The top row denotes the
composites for an area average over tropical Africa (20 to
30<inline-formula><mml:math id="M24" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E and 0 to 10<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N), while the bottom row
denotes the composites for an area average over tropical South
America (65 to 80<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W and 20 to 5<inline-formula><mml:math id="M27" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.)</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f07.png"/>

        </fig>

      <p id="d1e1214">Results over tropical Africa are generally similar to those over the
Amazon; however, CAM5.5 tends to simulate the maximum precipitation
rate with better fidelity over this region than over the Amazon.
Experiments and modifications to the deep convection scheme are
currently underway.  It is, however, encouraging that CAM5.5 is able
to improve the diurnal cycle of precipitation over tropical land as
this has been a longstanding bias in GCMs.  Notably, this has been
achieved without changing the deep convection scheme.  Further
improvements in the representation of the diurnal cycle of
precipitation may be achieved by removing the conventional deep
convection scheme and allowing CLUBB to also simulate this
regime <xref ref-type="bibr" rid="bib1.bibx59" id="paren.72"/>.</p>
      <p id="d1e1220">The SST biases, computed relative to the
pre-industrial HadISST observation estimates <xref ref-type="bibr" rid="bib1.bibx53" id="paren.73"/>, for
the three models are shown in Fig. <xref ref-type="fig" rid="Ch1.F8"/>.  Unlike other
variables displayed in this section, which showed either an improved
or static mean error and RMSE compared to the previous model
iteration, the SST shows somewhat worsening error with each successive
model iteration, with the difference in error from CESM-CAM5.3 to
CESM-CAM5.5 being statistically significant.  In a sense, this is not
very surprising, as the CAM5.3 configuration, which was used for the
CESM large ensemble project, was well tuned to achieve very good SSTs.
Improvements to the simulation of SSTs in NCAR's next-generation
climate model are being investigated as the new ocean, land, and
sea-ice component models are being finalized and as final tunings to the
model are iteratively performed.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p id="d1e1230">Same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for sea surface
temperature biases computed relative to pre-industrial HadISST
observations.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f08.png"/>

        </fig>

      <p id="d1e1241">With the introduction of CAM5.4 physics, a cold bias becomes present
in the North Pacific and especially the North Atlantic Ocean.  Likely
this is due to the new ice nucleation scheme and upgraded
microphysics, which is responsible for greater amounts of low-level
liquid cloud that is more reflective at these latitudes.  This is also
the case in the Southern Ocean, where the cold bias in CAM5.4 and
CAM5.5 can be explained by introduction of clouds that are too
reflective near 45<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.  While biases in the midlatitude
regions between CAM5.4 and CAM5.5 are very similar, differences do
exist in the tropics and subtropics.  For example, CAM5.4 has a large
positive SST bias in the southeastern tropical Pacific, which is
ameliorated in CAM5.5 and one of the likely reasons for the reduced
double ITCZ bias.  Similar bias reductions are found in the tropical
Atlantic Ocean.  Not surprisingly, tropical SST biases in CAM5.5 are
well correlated with the precipitation biases, namely over the
tropical western Pacific and western Indian oceans.</p>
      <p id="d1e1253">Surface stress from the atmosphere is another important component to
the coupled system and the surface stress biases, computed relative to
the European Remote Sensing Satellite Scatterometer
<xref ref-type="bibr" rid="bib1.bibx4" id="paren.74"><named-content content-type="pre">ERS;</named-content></xref> observations, can be seen in
Fig <xref ref-type="fig" rid="Ch1.F9"/>.  Similar to the SST biases, we see that
the positive surface stress bias in the Southern Ocean increases by
20 % in CAM5.4 and CAM5.5 when compared to CAM5.3.  We note that
this increase in surface stress for CESM-CAM5.4 and CESM-CAM5.5 is
very similar to that found in atmosphere-only simulations.  This
degradation is likely due to vast changes in low clouds over these
regions, and reconciling these changes for an improved representation
of surface stresses and SSTs is an area left for future work.  The
addition of CAM5.5 physics, CLUBB, neither improves nor degrades these
biases, suggesting they are the result of the addition of the CAM5.4
physics.  An examination of the surface stresses in the subtropics,
where boundary layer clouds and trade wind cumulus are prevalent,
shows that CAM5.5 reduces much of positive bias seen in the surface
stress magnitude by 10 to 15 % in CAM5.3 and CAM5.4.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p id="d1e1266">Same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for surface stress
biases computed relative to ERS observations.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f09.png"/>

        </fig>

      <p id="d1e1277"><?xmltex \hack{\newpage}?>Figure <xref ref-type="fig" rid="Ch1.F10"/> displays the biases for Arctic sea ice
computed relative to the HadISST pre-industrial dataset.  CESM-CAM5.3
generally has the best agreement with observations, and this is not
surprising since the sea-ice model was not tuned at all in the
CESM-CAM5.4 and CESM-CAM5.5 simulations.  While the two new
configurations of CAM tend to produce less sea ice in the Arctic and
more in the North Atlantic and the Labrador Sea compared to the baseline
CESM-CAM5.3 configuration, it appears that CESM-CAM5.4 produces the
thinnest sea ice in the Arctic, while CESM-CAM5.5 is only marginally
lower than the baseline CESM-CAM5.3 simulation.  All three
configurations use the same generation of the Community Ice CodE
(CICE) and ocean model; thus, we speculate that differences may be due
to differences in the atmospheric physics and their impact on the
coupled system.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e1285">Same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for sea-ice
concentration over the North Pole computed relative to
pre-industrial HadISST observations.</p></caption>
          <?xmltex \igopts{width=412.564961pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f10.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <title>Ocean meridional overturning circulation</title>
      <p id="d1e1302">Figure <xref ref-type="fig" rid="Ch1.F11"/> shows the global and Atlantic Ocean meridional
overturning circulation (MOC) for CESM-CAM5.3 and CESM-CAM5.5.  The
maximum overturning in the Atlantic occurs near 35<inline-formula><mml:math id="M29" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N at a
depth of 1 <inline-formula><mml:math id="M30" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> for both CESM-CAM5.3 and CESM-CAM5.5.
CESM-CAM5.5 is weaker at about 23 sverdrups
(Sv <inline-formula><mml:math id="M31" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), compared to CESM-CAM5.3 at
about 26 <inline-formula><mml:math id="M34" display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula>.  For comparison, CCSM3's maximum Atlantic MOC
(AMOC) was about 20 <inline-formula><mml:math id="M35" display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx14" id="paren.75"/>, whereas the
maximum AMOC in CCSM4 was 24 <inline-formula><mml:math id="M36" display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx17" id="paren.76"/>.  However,
whereas these configurations used different mixing parameterizations
in the ocean model, the ocean models in CESM-CAM5.3 and CESM-CAM5.5
are largely the same.  A possible reason for the differences between
the two configurations is in the simulation of the surface wind stress
(Fig. <xref ref-type="fig" rid="Ch1.F9"/>) in the North Atlantic.  Whereas
CESM-CAM5.3 and CESM-CAM5.4 contain positive biases in the Labrador
Sea, this has been largely reduced in the CESM-CAM5.5 simulations.  It
is also possible that differences in the simulated AMOC could arise
from the simulation of surface wind stresses over the Southern
Ocean <xref ref-type="bibr" rid="bib1.bibx15" id="paren.77"/>.  Overall, however, it does not appear that
the inclusion of CLUBB degrades the simulation of AMOC in CESM-CAM5.5.
Observational estimates generally show a maximum AMOC of
20 <inline-formula><mml:math id="M37" display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx42" id="paren.78"/>, suggesting that most
current and past configurations of CESM and CCSM potentially
overestimate AMOC, though all configurations are in line with
uncertainty
estimates <xref ref-type="bibr" rid="bib1.bibx49" id="paren.79"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p id="d1e1408">Global meridional overturning circulation (MOC,
<bold>a</bold> and <bold>b</bold>) and Atlantic MOC (<bold>c</bold> and
<bold>d</bold>) for CESM-CAM5.3 (<bold>a</bold> and <bold>c</bold>) and
CESM-CAM5.5 (<bold>b</bold> and <bold>d</bold>).  Units are sverdrups.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f11.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS3">
  <?xmltex \opttitle{El~Ni\~{n}o--Southern Oscillation}?><title>El Niño–Southern Oscillation</title>
      <p id="d1e1449">Of great importance for a climate model to represent with some
fidelity is the ENSO, which is the
strongest coupled mode of variability in the climate system.
Teleconnections from the warming of the tropical waters in the eastern
Pacific, associated with El Niño events, have significant impacts on
weather and climate over much of the planet, which illustrates the
importance to represent in a climate model.  Previous versions of
NCAR's climate model, namely CCSM3 <xref ref-type="bibr" rid="bib1.bibx14" id="paren.80"/>, struggled to
simulate ENSO, which was dominated by variability at the 2-year,
rather than the 3- to 7-year, period from observations.  The ENSO
period was greatly improved upon with CCSM4 <xref ref-type="bibr" rid="bib1.bibx17" id="paren.81"/>, with the
introduction of changes made to the deep convection
scheme <xref ref-type="bibr" rid="bib1.bibx54 bib1.bibx45" id="paren.82"/>; however, the simulated ENSO in
CCSM4 still had an unrealistically large amplitude.</p>
      <p id="d1e1461">Figure <xref ref-type="fig" rid="Ch1.F12"/> displays the variance spectra of the
Niño-3.4 monthly SST anomalies for observations (HadISST) and for
CESM-CAM5.3, CESM-CAM5.4, and CESM-CAM5.5.  Various 100-year samples
are displayed from the long CESM-CAM5.3 control and it is quite clear
there exists variability in the amplitude and periodicity of the
simulated ENSO within this long control run.  Therefore, caution must
be exercised when evaluating the relatively short control
simulations <xref ref-type="bibr" rid="bib1.bibx63" id="paren.83"/> of CESM-CAM5.4 and CESM-CAM5.5.
However, it is also clear that the amplitude of the simulated ENSO
from CESM-CAM5.4 is unrealistically large.  Obviously, this simulation
sparked concern about an inherent deficiency in the CAM5.4 physics
causing a degradation in the simulation of ENSO.  Sensitivity
experiments revealed that the tuning of <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mtext>cs</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for radiation
balance for CAM5.4 was the cause of the large-amplitude ENSO.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><caption><p id="d1e1482">Niño-3.4 power spectra for HadISST observations (black
curve), CESM-CAM5.3 (blue curve), CESM-CAM5.4 (green curve),
and CESM-CAM5.5 (red curve).  Years 100–199 are displayed for
CESM-CAM5.5 while the power spectra for CESM-CAM5.4 represent
the entire simulation.  For CESM-CAM5.3, the spectra are
displayed for various 100-year samples of the run, as denoted by
the legend.  Note the range of scale on the <inline-formula><mml:math id="M39" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis varies
between panels.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f12.png"/>

        </fig>

      <p id="d1e1499">The ENSO simulation provided by CESM-CAM5.5 is much more reasonable
than CAM5.4.  While CESM-CAM5.5 simulates a better amplitude compared
to CESM-CAM5.3, the periodicity is on the shorter end but still
acceptable.  It should be noted that the first 100 years
simulated by CESM-CAM5.3 also had a 3-year periodicity but
eventually settled into a 4- to 5-year periodicity, which is
closer to observations.  At this point, it is unclear if a longer
simulation of CESM-CAM5.5 will result in slightly longer periodicity.
However, it is worthwhile to note that it does not appear that the
simulation of ENSO is significantly improved or degraded with the
addition of the CAM5.5 physical parameterizations.  The Niño-3.4
time series can be seen in Fig. <xref ref-type="fig" rid="Ch1.F13"/> and
demonstrates the ability of CESM-CAM5.5 to simulate, with reasonable
fidelity, the variable cycles associated with ENSO, including the
often observed 2-year La Niña events that follow a 1-year
El Niño event.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><caption><p id="d1e1506">Niño-3.4 time series for HadISST observations <bold>(a)</bold>,
CESM-CAM5.3 (<bold>b</bold>, years 400–499), CESM-CAM5.4 (<bold>c</bold>,
years 0–99), and CESM-CAM5.5 (<bold>d</bold>, years 100–199).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f13.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Madden–Julian Oscillation</title>
      <p id="d1e1536">Although the deep convection scheme has not changed in the evolution
of CESM experiments shown in this paper, it is still important to
assess the differences in the simulation of intra-annual seasonal
tropical variability in the simulations with the new cloud and
turbulence physics.  In addition, several studies have found that
changing the shallow convection scheme can greatly improve the
simulation of the MJO
<xref ref-type="bibr" rid="bib1.bibx65 bib1.bibx10" id="paren.84"/>.  Figure <xref ref-type="fig" rid="Ch1.F14"/> shows
the composite of the 20- to 100-day bandpass-filtered daily anomalies of
outgoing longwave radiation (OLR) and wind vectors at 850 <inline-formula><mml:math id="M40" display="inline"><mml:mi mathvariant="normal">hPa</mml:mi></mml:math></inline-formula>
associated with the MJO for ERA, CESM-CAM5.3, and CESM-CAM5.5.  The
time periods displayed for the model simulations are the same as those shown
for the results on climatology in Sect. 4.1.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><caption><p id="d1e1553">The composite of the 20- to 100-day bandpass-filtered
daily anomalies of OLR (color) and wind vectors at 850 hPa
during boreal winter (November through April) for ERA-Interim
<bold>(a)</bold>, CESM-CAM5.3 <bold>(b)</bold>, and CESM-CAM5.5
<bold>(c)</bold>.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f14.jpg"/>

        </fig>

      <p id="d1e1571">The ERA analysis clearly shows eastward propagation of the OLR
anomalies, associated with the MJO.  CESM-CAM5.3 shows very little
variability, characteristic of a model that struggles to simulate the
MJO.  While there is a slight improvement in the strength of the
anomalies and signal of the propagation in the CESM-CAM5.5 simulation,
it is still much weaker than in observations.  These results are
similar to those found in atmosphere-only simulations (not shown).
While there are modest improvements in the simulation of the MJO with
the addition of CLUBB, further improvements of the MJO may be achieved
by allowing the CLUBB parameterization to also simulate the deep
convective regime, such as the encouraging results presented
in <xref ref-type="bibr" rid="bib1.bibx59" id="text.85"/>, or by modifications to the existing deep
convection scheme in CAM5.5.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <title>Historical simulations</title>
      <p id="d1e1583">Figure <xref ref-type="fig" rid="Ch1.F15"/> displays the time series of the globally averaged
surface temperature anomaly for 1920 to 2005 from observations and the
ensemble mean from 30 members of the CESM-CAM5.3 configuration.  The
model spread from the CESM-CAM5.3 ensemble is denoted by the shading.
One realization from the CESM-CAM5.5 model is also displayed.  Once
again, it should be noted that a decision was made not to run the
CESM-CAM5.4 model for the historical simulation since it was seen as
an intermediate model version along the CAM development process.  In
addition, we stress that only a single realization from CESM-CAM5.5 is
shown.  Thus, the point of examining this is only to gauge the
interplay between the climate sensitivity and aerosol interactions in
CESM-CAM5.5 and how they may come into play for the 20th century
simulation.  The CESM-CAM5.5 run was started from year 150 of the
pre-industrial control.  Details on the specifics of the
initialization of the CESM-CAM5.3 model can be found
in <xref ref-type="bibr" rid="bib1.bibx30" id="text.86"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><caption><p id="d1e1593">Evolution of the globally averaged surface temperature for
the 1920–2005 period of the historical run for the Merged Land–Ocean
Surface Temperature Analysis (MLOST) observations
(black curve), CCSM4 ensemble average (green curve), CESM large
ensemble average (blue curve), and CESM-CAM5.5 (red curve).  The
blue shading denotes the CESM large ensemble spread.</p></caption>
          <?xmltex \igopts{width=216.240945pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/11/235/2018/gmd-11-235-2018-f15.png"/>

        </fig>

      <p id="d1e1602">The single realization of CESM-CAM5.5 stays mostly within the model
spread of the 30-member CESM large ensemble, with some exceptions.
The first is a period in 1930 that is much warmer than observations
and the CESM-CAM5.3 model average.  The second is that the CESM-CAM5.5
simulation ends cooler than the CESM-CAM5.3 average and about as cold
as the coldest member.  Although it is difficult to attribute these
differences to either changes in the CAM physics or to internal
variability, the fact that the CESM-CAM5.5 simulation ends colder than
observations is worth investigation.  We identify the three most
likely reasons for this difference: (1) noise from internal
variability that cannot be quantified from one ensemble member, (2) a
relatively short pre-industrial control run in which the ocean may not
be fully adjusted to the CAM5.5 physics, and (3) changes in the
climate sensitivity and/or aerosol indirect forcing.  Here, we focus on
the third reason, since we can readily quantify these measures.</p>
      <p id="d1e1605">Various slab ocean model (SOM) experiments with doubled <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
concentrations performed throughout the CAM-CLUBB development process
have identified a climate sensitivity of 3.8 <inline-formula><mml:math id="M42" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula> associated with
CAM5.5, which is slightly lower than the climate sensitivity of
4.1 <inline-formula><mml:math id="M43" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula> associated with CAM5.3 <xref ref-type="bibr" rid="bib1.bibx21" id="paren.87"/>.  These
estimates are higher than the CMIP5 model mean <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>
equilibrium climate sensitivity of 3.37 <inline-formula><mml:math id="M45" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx3" id="paren.88"/>.
While the climate sensitivity associated with CAM5.5 is indeed
slightly lower than CAM5.3, it is also necessary to investigate the
compensating effect of aerosols on the climate system.</p>
      <p id="d1e1664">Table <xref ref-type="table" rid="Ch1.T3"/> documents the radiative flux perturbation (RFP),
changes in SWCF and LWCF, and the aerosol indirect effect (AIE) for various aerosol
perturbation experiments involving several versions of CAM throughout the
development process. All experiments shown in Table <xref ref-type="table" rid="Ch1.T3"/> represent
an aerosol perturbation calculation where each configuration used
climatological SSTs and present-day (PD) forcing and was run twice: once with
PD aerosol emissions and the other with pre-industrial (PI) aerosol
emissions. Thus, the values shown in Table <xref ref-type="table" rid="Ch1.T3"/> are the
differences between the simulations using PD aerosol emissions and PI
emissions. The RFP <xref ref-type="bibr" rid="bib1.bibx41" id="paren.89"/> is defined as the difference in the
top-of-model (TOM) radiation imbalance between the PD and PI aerosol emission
simulations. The AIE is defined as <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:mtext>AIE</mml:mtext><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mtext>SWCF</mml:mtext><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mtext>LWCF</mml:mtext></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1696">CAM5.3 has an RFP and AIE that are larger than satellite estimates
presented in <xref ref-type="bibr" rid="bib1.bibx52" id="text.90"/>.  Therefore, we can conclude that the
successful CESM-CAM5.3 simulation of the 20th century is due to
competing effects of a potentially large climate sensitivity and an
AIE that is too strong. <xref ref-type="bibr" rid="bib1.bibx19" id="text.91"/> showed that the RFP and
AIE are reduced by the implementation of the MG2 prognostic
precipitation scheme (denoted by the CAM5.3+MG2 simulation in
Table <xref ref-type="table" rid="Ch1.T3"/>).  The reason for this is that precipitation processes
are altered with more accretion relative to autoconversion in MG2.
Accretion does not depend on cloud drop number, so the clouds are less
sensitive to drop number.  However, simulations of CAM5.3+MG2+CLUBB
displayed an increase in the RFP and AIE when compared to the
CAM5.3+MG2 simulations.  This increase is due to the fact that since
CLUBB is a unified parameterization of stratiform and shallow
convective clouds and drives a single microphysics scheme, the aerosol
indirect effect is now being considered in more cloud types than
CAM5.3.  While this physical consistency is desirable for a global
model, it does subject the model to an increase in the sensitivity of
cloud–aerosol interactions.</p>
      <p id="d1e1707">However, performing AIE experiments with CAM5.4 (which includes the
MG2 prognostic precipitation scheme), we see that the forcing to
aerosols has rebounded to CAM5.3 values.  As expected, due to the AIE
being considered in more cloud types than CAM5.4, the sensitivity is
even higher for CAM5.5.  Puzzled why CAM5.4 has an aerosol sensitivity
so much higher than CAM5.3+MG2, the authors investigated and found
that the increased sensitivity was due to increased lifetime of <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
which was due to the new MAM4 aerosol model.  Nevertheless, we now
gain a deeper understanding for why CESM-CAM5.5 ended the 20th century
simulation colder than observations and CESM-CAM5.3; this was due to
compensating effects of a lower climate sensitivity and higher aerosol
sensitivity when compared to CESM-CAM5.3.</p>
      <p id="d1e1721">The higher aerosol sensitivity associated with CESM-CAM5.5 is a
combined effect due to the increased lifetime of <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from CAM5.4
physics as well as the fact that the AIE is now being considered in more
cloud types with CAM5.5.  One potential solution,
following <xref ref-type="bibr" rid="bib1.bibx22" id="text.92"/> is to change the autoconversion and
accretion process rates from the default used in the MG2
microphysics <xref ref-type="bibr" rid="bib1.bibx32" id="paren.93"/> to that
of <xref ref-type="bibr" rid="bib1.bibx55" id="text.94"/>. <xref ref-type="bibr" rid="bib1.bibx55" id="text.95"/> has lower autoconversion
rates for lower liquid water paths than <xref ref-type="bibr" rid="bib1.bibx32" id="text.96"/>
because it includes a hysteresis effect, whereby autoconversion in the
absence of existing rain is delayed, thus damping the AIE in the
shallow cloud regime that CLUBB and MG2 are now acting on in CAM5.5.
Indeed, Table <xref ref-type="table" rid="Ch1.T3"/> shows that, in climatologically
prescribed SST simulations, the CAM5.5 runs using
the <xref ref-type="bibr" rid="bib1.bibx55" id="text.97"/> autoconversion and accretion physics
reduce the AIE and RFP.  The authors are currently investigating
coupled simulations of CESM-CAM5.5 with the new process rate
calculations that will be included in a future version of CAM6.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p id="d1e1764">In this paper, we documented coupled simulations from various
configurations of CAM along the development track towards CAM6.  The
baseline simulation is CESM-CAM5.3, which uses the model physics used
for the CESM large ensemble project and CMIP5 simulations.  The
CESM-CAM5.4 simulation updates many of the aerosol physics and
microphysics parameterizations in the model, while CESM-CAM5.5 updates
the turbulence, shallow convection, and boundary layer physics.  More
specifically, CAM5.5 represents the implementation of the CLUBB
parameterization.  While the CAM5.5 model represents the physics
package likely to be used for CAM6, it should be noted that
CESM-CAM5.5 simulations documented in this paper do not represent
CESM2.  The purpose of this paper is to document changes to the
coupled simulations when only the atmosphere component is changed.  In
addition, this is the first time coupled simulations have been
documented in a climate model using the “assumed” PDF method, which
has been a method experimentally implemented into many atmosphere-only
climate models during the past decade.  CESM2 will introduce new
generations for the ocean, land, and sea-ice models.  It is also
likely that CAM6 will differ slightly from CAM5.5 as the CAM model
will need to be tuned with the newer component models.  In addition,
adjustments will have to be made to CAM5.5 to improve some of the
degradations to the simulated climate introduced by CESM-CAM5.5 and
the new component models.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p id="d1e1770">Summary of aerosol perturbation experiments.  Values
shown represent the differences in simulations using present-day
(2000) – pre-industrial (1850) aerosol emissions.  All values
are in <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.  All simulations are run with
prescribed climatological SSTs where the only difference is in
the aerosol emissions.  RFP is defined as the difference between
the top-of-model radiation imbalance for simulations with
present-day and pre-industrial aerosol emission.  Values from
the CAM5.3+MG2 simulation are from <xref ref-type="bibr" rid="bib1.bibx19" id="text.98"/>.  The
CAM5.5+SB2001 simulation represents a configuration of CAM5.5
run with the <xref ref-type="bibr" rid="bib1.bibx55" id="text.99"/> autoconversion and accretion
physics.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.92}[.92]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Simulation</oasis:entry>  
         <oasis:entry colname="col2">RFP</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>SWCF</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M51" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>LWCF</oasis:entry>  
         <oasis:entry colname="col5">AIE</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">CAM5.3</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M52" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M53" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.7</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M54" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.5</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M55" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CAM5.3 <inline-formula><mml:math id="M56" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> MG2</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M57" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M58" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.9</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M59" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.1</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M60" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CAM5.3 <inline-formula><mml:math id="M61" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> MG2 <inline-formula><mml:math id="M62" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> CLUBB</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M63" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.6</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M64" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.2</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M65" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.0</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M66" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CAM5.4</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M67" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.6</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M68" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.2</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M69" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.1</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M70" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CAM5.5</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M71" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.8</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M72" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.8</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M73" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.4</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M74" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CAM5.5 <inline-formula><mml:math id="M75" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SB2001</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M76" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.5</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M77" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M78" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.0</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M79" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <p id="d1e2129">Results presented in this paper focused on the pre-industrial control
runs between the three CESM configurations.  All three simulations
were tuned to achieve a top-of-model radiation imbalance of <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mo>|</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and all three were able to achieve a stable
pre-industrial control.  Improvements in SWCF towards longstanding
biases in CAM5.3 are seen in the Southern Ocean, tropical land, and
the stratocumulus to cumulus transition regions.  These improvements
are due to combined effects of the CAM5.4 physics upgrades and the
CLUBB parameterization (CAM5.5).</p>
      <p id="d1e2163">Overall, the simulation of SST is somewhat degraded for CESM-CAM5.4
and CESM-CAM5.5 when compared to CESM-CAM5.3.  In a sense, this is not
so surprising since the CESM-CAM5.3 model was well trained for CMIP5
simulations.  Most of these degradations are coming from the
midlatitude storm tracks, where there was a marked increase noted in
low clouds for CESM-CAM5.4 and CESM-CAM5.5 as well as an increase in
surface stress.  These degradations in SSTs translate to a slight
increase in Arctic sea ice for both configurations of the model.
Future work will focus on improving the simulation of SST as well as
Arctic sea ice as the new component models are introduced to CESM2 and
the model prepares for CMIP6 simulations.</p>
      <p id="d1e2167">The overall simulation of the mean climatology of precipitation was
decidedly mixed with the new version of CESM-CAM5.4 and CESM-CAM5.5,
as both contain regional improvement and regional degradations.  For
instance, CESM-CAM5.4 tends to exacerbate the double ITCZ bias.  Since
the Southern Ocean clouds are also improved, this indicates that in
coupled model simulations Southern Ocean cloud biases may not influence
the ITCZ biases.  On the other hand, CESM-CAM5.5 does tend to have a
slightly improved double ITCZ bias, when compared to CESM-CAM5.3, but
it also contains a dry bias over the Amazon rain forest.  We have
determined that this precipitation bias in the Amazon was due to
improving a compensating error in CAM5.3.  That is, CESM-CAM5.5 tends
to have better timing of the most intense precipitation over tropical
land than does CESM-CAM5.3.  CESM-CAM5.3 tends to precipitate too
early over land, a common GCM bias, whereas CESM-CAM5.5 starts to rain
at roughly the correct time; it stops too early.  We conclude that
efforts to ameliorate this dry bias in CESM-CAM5.5 should focus on
generating more intense and longer duration precipitation events over
the Amazon and modifications to the deep convection are currently
underway.</p>
      <p id="d1e2170">Minor improvements can also be seen in the simulation of the MJO, as
CESM-CAM5.5 tends to have a bit more low-frequency variability in the
eastward propagating convection.  However, the simulated MJO in
CESM-CAM5.5 is still much weaker than the observed MJO.  This result
differs from other studies which found substantial improvements to the
simulation of the MJO by solely changing the shallow convection
scheme.  On the other hand, the study of <xref ref-type="bibr" rid="bib1.bibx59" id="text.100"/>
found that allowing CLUBB to simulate the deep convective regime led
to substantial improvements in the simulation of the MJO.  These
results seem to warrant a more thorough evaluation on the interaction
between CLUBB and the ZM deep convection scheme to further improve the
simulation of the MJO in CESM-CAM5.5.</p>
      <p id="d1e2176">Perhaps one of the most important simulated features in coupled
simulations is the ENSO.
CESM-CAM5.3 has a reasonable ENSO simulation, with a period that
agrees well with observations but an amplitude that is considered to
be too large.  CESM-CAM5.4, on the other hand, exacerbates the
amplitude bias.  However, it was found through sensitivity studies
that the ENSO amplitude was directly related to how this model
configuration was tuned for radiation balance.  While CESM-CAM5.5
appears to improve the amplitude of ENSO compared to CESM-CAM5.3 and
CESM-CAM5.4, it is hard to give a definitive answer due to the
relatively short pre-industrial control simulation.  CESM-CAM5.3
exhibits noticeable variability in the simulation of ENSO throughout
its 2100-year control run, similar to <xref ref-type="bibr" rid="bib1.bibx63" id="text.101"/>;
thus, caution must be exercised when analyzing ENSO from a
200-year simulation.</p>
      <p id="d1e2182">Another very important metric when assessing coupled model
performance is the credibility of the 20th century simulation.  Any
climate model with upgraded physics should be able to faithfully
simulate the observed temperature trend of the 20th century, to give
confidence of a credible simulation in the presence of aerosol and
greenhouse gas forcing.  Due to computing restraints, only one
realization of the 20th century was performed for CESM-CAM5.5; thus, we
used this simulation as a way point in assessing the interplay between
climate sensitivity and aerosol effects.  For the most part, the
simulated temperature trend stays within the bounds of the
30-member CESM large ensemble.  The simulated temperature anomalies for
2000–2005 do end up a bit on the cold side.  Knowing that this may be
cause for concern for some scientists in the CESM2 development
process, we conclude that the most likely reason for this is a
reduction in climate sensitivity in CESM-CAM5.5 compared to
CESM-CAM5.3 (which has been an outlier in terms of CMIP5 models for
this metric) and an increased cloud–aerosol sensitivity.</p>
      <p id="d1e2185">The reason for the increased cloud–aerosol sensitivity is two-fold, with
the first reason relating to an increase in <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lifetime with
the introduction of CAM5.4 physics, due to the new aerosol model, and
the second reason being that cloud–aerosol interactions are computed
in more cloud regimes in CAM5.5 than they are in CAM5.3 or CAM5.4.  We
propose a solution to decreasing the aerosol–cloud sensitivity in
CAM5.4 by switching the autoconversion and accretion physics to the
formulation proposed by <xref ref-type="bibr" rid="bib1.bibx55" id="text.102"/>, which tends to decrease
precipitation autoconversion at low liquid water
paths.</p>
      <p id="d1e2202">While this paper does not document the coupled simulations that will
be produced by NCAR's next-generation climate model (CESM2), it is
important to document the coupled model performance throughout the
development process to highlight where notable improvements and
degradations originate.  In addition, this paper represents the first
time that coupled simulations have been documented from a model using
the “assumed PDF” method for climate simulations.  This is a method
that has been widely employed for experimental implementation into
atmosphere-only climate models but is important to assess the
feasibility of running such a parameterization in the coupled model.</p>
      <p id="d1e2206">While the simulation of the coupled climate is encouraging with
CESM-CAM5.5, exciting development opportunities still lie ahead.  By
removing the deep convection scheme from CAM5.5 and allowing CLUBB to
operate on this regime
<xref ref-type="bibr" rid="bib1.bibx25" id="paren.103"><named-content content-type="pre">i.e.,</named-content><named-content content-type="post">and <xref ref-type="bibr" rid="bib1.bibx59" id="author.104"/>; <xref ref-type="bibr" rid="bib1.bibx59" id="year.105"/></named-content></xref>,
we would have a unified parameterization that could handle all clouds
and turbulence.  In addition, this unified parameterization would
drive a single microphysics scheme, allowing for a consistent
treatment of cloud–aerosol interactions in all cloud types.  Removing
the deep convection scheme would also remove any undesired
interactions between the ZM scheme and CLUBB to allow for a true
assessment of the scale sensitivity of CLUBB for GCM simulations.
While previous studies have already shown that these PDF schemes can
function in a scale-insensitive manner for
CRMs <xref ref-type="bibr" rid="bib1.bibx6 bib1.bibx36 bib1.bibx11" id="paren.106"/>, some preliminary
GCM studies <xref ref-type="bibr" rid="bib1.bibx24 bib1.bibx6 bib1.bibx12" id="paren.107"/> do show at
least some sensitivity to horizontal and/or vertical grid sizes.
However, it is unclear if these sensitivities stem from the
traditional deep convection schemes in these models.  Having one
unified parameterization would add clarity towards assessing the scale
sensitivity of these assumed PDF methods in GCM simulations.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability">

      <p id="d1e2231">The model code used in these simulations is
stored within the CAM development repository and is available upon
request from the corresponding author.  Results in this paper are
based on CESM tag cesm1_4_01_n27_cam5_3_77, which is not a
publicly released version of CAM but is available on the CESM
developer repository at
<uri>https://svn-ccsm-models.cgd.ucar.edu/cam1/branch_tags/cam55_reproduce_tags/cesm1_4_beta01_n27_cam5_3_77</uri>.
Access and terms of use to the CESM developer repository can be
found at
<uri>http://www.cgd.ucar.edu/cseg/development-code.html</uri>.
Climatology files of model runs used to generate figures in this
paper have been published at <uri>www.zenodo.com</uri>
(<ext-link xlink:href="https://doi.org/10.5281/zenodo.815593" ext-link-type="DOI">10.5281/zenodo.815593</ext-link>; Bogenschutz, 2017).</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e2249">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e2255">Peter A. Bogenschutz is supported by National Science Foundation grant
number 0968657.  The National Center for Atmospheric Research is
sponsored by the United States National Science Foundation.
Vincent E. Larson gratefully acknowledges financial support under grant
0968640 from the National Science Foundation and grant DE-SC0006927
from the SciDAC program of the US Department of Energy.  The authors
thank Katherine Thayer-Calder and Julio Bacmeister for comments and
suggestions.  This work was performed under the auspices of the
US Department of Energy by Lawrence Livermore National
Laboratory.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: Paul Ullrich<?xmltex \hack{\newline}?>
Reviewed by: two anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Adler et al.(2003)</label><mixed-citation>
Adler, R. F., Huffman, G. J., Chang, A., Ferraro, R., Xie, P.-P., Janowiak J., Rudolf B., Schneider, U., Curtis, S., Bolvin, D., Gruber, A., Susskind, J., Arkin, P., and Nelkin, E.: The version-2 Global Precipitation Climatology Project (GPCP) monthly precipitation analysis (1979–present), J. Hydrometeorol., 4, 1147–1167, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Albani et al.(2014)</label><mixed-citation>
Albani, S., Mahowald, N. M., Perry, A. T., Scanza, R. A., Zender, C. S., Heavens, N. G., Maggi, V., Kok, J. F., and Otto-Bliesner, B. L.: Improved dust representation in the Community Atmosphere Model, J. Adv. Model. Earth Sy., 6, 541–570, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Andrews et al.(2012)</label><mixed-citation>
Andrews, T., Gregory, J. M., Webb, M. J., and Taylor, K. E.: Forcing, feedbacks and climate sensitivity in CMIP5 coupled atmosphere-ocean climate models, Geophys. Res. Lett., 39, L09712, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Bentamy et al.(1999)</label><mixed-citation> Bentamy, A., Queffeulou, P., Quilfen, Y., and Katsaros, K.: Ocean surface wind fields estimated from satellite active and passive microwave instruments, IEEE T. Geosci. Remote, 37, 2469–2486, 1999.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Bogenschutz and Krueger(2013a)</label><mixed-citation> Bogenschutz, P. A. and Krueger, S. K.: A simplified PDF parameterization of subgrid-scale clouds and turbulence for cloud-resolving models, J. Adv. Model. Earth Sy., 5, 195–211, 2013a.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Bogenschutz et al.(2013b)</label><mixed-citation> Bogenschutz, P. A., Gettelman, A., Morrison, H., Larson, V. E., Craig, C., and Schanen, D. P.: Higher-order turbulence closure and its impact on climate simulations in the community atmosphere model, J. Climate, 26, 9655–9676, 2013b.</mixed-citation></ref>
      <ref id="bib1.bib1"><label>1</label><mixed-citation>Bogenschutz, P. A.: Dataset for The Path Towards CAM6: Coupled Simulations with CAM5.4 and CAM5.5, available at: <ext-link xlink:href="https://doi.org/10.5281/zenodo.815593" ext-link-type="DOI">10.5281/zenodo.815593</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Boville and Gent(1998)</label><mixed-citation> Boville, B. A. and Gent, P. R.: The NCAR Climate System Model, version one, J. Climate, 11, 1115–1130, 1998.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Bretherton and Park(2009)</label><mixed-citation> Bretherton, C. S. and Park, S.: A new moist turbulence parameterization in the Community Atmosphere Model, J. Climate, 22, 3422–3448, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Buckley and Marshall(2016)</label><mixed-citation> Buckley, M. W. and Marshall, J.: Observations, inferences, and mechanisms of Atlantic Meridional Overturning Circulation variability: a review, Rev. Geophys., 54, 1–59, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Cai et al.(2013)</label><mixed-citation> Cai, Q., Zhang, G. J., and Zhou, T.: Impacts of shallow convection on MJO simulation: a moist static energy and moisture budget analysis, J. Climate, 26, 2417–2431, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Cheng and Xu(2008)</label><mixed-citation> Cheng, A. and Xu, K.-M.: Simulation of boundary-layer cumulus and stratocumulus clouds using a cloud-resolving model with low and third-order turbulence closures, J. Meteorol. Soc. Jpn., 86, 67–86, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Cheng and Xu(2011)</label><mixed-citation>Cheng, A. and Xu, K.-M.: Improved low-cloud simulation from a multiscale modeling framework with a third-order turbulence closure in its cloud resolving model component, J.
Geophys. Res., 115, D14101, <ext-link xlink:href="https://doi.org/10.1029/2010JD015362" ext-link-type="DOI">10.1029/2010JD015362</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Cheng and Xu(2015)</label><mixed-citation> Cheng, A. and Xu, K.-M.: Improved low-cloud simulation from the Community Atmosphere Model with an advanced third-order turbulence closure, J. Climate, 28, 5737–5762, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Collins et al.(2006)</label><mixed-citation> Collins, W. D., Bitz, C. M., Blackmon, M. L., Bonan, G. B., Bretherton, C. S., Carton, J. A., Chang, P., Doney, S. C., Hack, J. J., Henderson, T. B., Kiehl, J. T., Large, W. G., McKenna, D. S., Santer, B. D., and Smith, R. D.: The Community Climate System Model Version 3 (CCSM3), J. Climate, 19, 2122–2143, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Delworth and Zeng(2008)</label><mixed-citation>Delworth, T. L. and
Zeng, F.: Simulated impact of altered Southern Hemisphere winds on the
Atlantic Meridional Overturning Circulation, Geophys. Res. Lett., 35, L20708,
<ext-link xlink:href="https://doi.org/10.1019/2008GL035166" ext-link-type="DOI">10.1019/2008GL035166</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Dirmeyer et al.(2011)</label><mixed-citation> Dirmeyer, P. A., Cash, B. A., Kinter, J. L., Jung, T., Marx, L., Satoh, M., Stan, C., Tomita, H., Towers, P., Wedi, N., Achuthavarier, D., Adams, J. M., Altshuler, E. L., Huang, B., Jin, E. K., and Manganello, J.: Simulating the diurnal cycle of rainfall in global climate models: resolution versus parameterization, Clim. Dynam., 39, 399–418, 2011.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>
Donner, L. J., Bruce. L. W., Hemler, R. S., Horowitz, L. W., Ming, Y., Zhao,
M., Golaz, J.-C., Ginoux, P., Lin, S.-J., Schwarzkopf, M. D., Austin, J.,
Alaka, G., Cooke, W. F., Delworth, T. L., Freidenreich, S. M., Gordon, C. T.,
Griffies, S. M., Held, I. M., Hurlin, W. J., Klein, S. A., Knutson, T. R.,
Langenhorst, A. R., Lee, H.-C., Lin, Y., Magi, B. I., Malyshev, S. L., Milly,
P. C. D., Naik, V., Nath, M. J., Pincus, R., Ploshay, J. J., Ramaswamy, V.,
Seman, C. J., Shevliakova, E., Sirutis, J. J., Stern, W. F., Stouffer, R. J., Wilson, R.
J., Winton, W., Wittengerg, A. T., and Zeng, F.: The dynamical core, physical
parameterizations, and basic simulation characteristics of the atmospheric
component AM3 of the GFDL global Coupled Model CM3, J. Climate, 24,
3484–3519, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Gent et al.(2011)</label><mixed-citation> Gent, P. R., Danabasoglu, G., Donner, L. J., Holland, M. K., Hunke, E. C., Jayne, S. R., Lawrence, D. M., Neale, R. B., Rasch, P. J., Vertenstein, M., Worley, P. H., Yang, Z.-L., and Zhang, M.: The Community Climate System Model Version 4, J. Climate, 24, 4973–4991, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Gettelman(2015)</label><mixed-citation>Gettelman, A.: Putting the clouds back in aerosol–cloud interactions, Atmos. Chem. Phys., 15, 12397–12411, <ext-link xlink:href="https://doi.org/10.5194/acp-15-12397-2015" ext-link-type="DOI">10.5194/acp-15-12397-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>
Gettelman, A. and Morrison H., Advanced Two-Moment bulk microphysics for
global models. Part I: Off-line tests and comparison with other schemes, J.
Climate, 28, 1268–1287, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Gettelman and Morrison(2015)</label><mixed-citation> Gettelman, A. and Morrison, H.: Advanced two-moment bulk microphysics for global models, Part I: Off-line tests and comparison with other schemes, J. Climate, 28, 1268–1287, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Gettelman et al.(2010)</label><mixed-citation>Gettelman, A., Liu, X., Ghan, S., Morrison, H., Park, S., Conley, A. J., Klein, S. A., Boyle, J., Mitchell, D. L., and Li, J.-L. F.: Global simulations of ice nucleation
and ice supersaturation with an improved cloud scheme in the Community
Atmosphere Model, J. Geophys. Res., 115, D18216, <ext-link xlink:href="https://doi.org/10.1029/2009JD013797" ext-link-type="DOI">10.1029/2009JD013797</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Gettelman et al.(2012)</label><mixed-citation> Gettelman, A., Kay, J. E., and Shell, K. M.: The evolution of climate feedbacks in the Community Atmosphere Model, J. Climate, 25, 1453–1469, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Gettelman et al.(2015)</label><mixed-citation> Gettelman, A., Morrison, H., Santos, S., Bogenschutz, P., and Caldwell, P. M.: Advanced two-moment bulk microphysics for global models, Part II: Global model solutions and aerosol-cloud interactions, J. Climate, 28, 1288–1307, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Golaz et al.(2002)</label><mixed-citation> Golaz, J.-C., Larson, V. E., and Cotton, W. R.: A pdf-based model for boundary layer clouds part I: Method and model description, J. Atmos. Sci., 59, 3540–3551, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Guo et al.(2014)</label><mixed-citation> Guo, H., Golaz, J.-C., Donner, L. J., Ginoux, P., and Hemler, R. S.: Multi-variate probability density functions with dynamics in the GFDL atmospheric general circulation model: Global Tests, J. Climate, 27, 2087–2108, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Guo et al.(2015)</label><mixed-citation> Guo, H., Golaz, J.-C., Donner, L. J., Wyman, B., Zhao, M., and Ginoux, P.: CLUBB as a unified cloud parameterization: opportunities and challenges, Geophys. Res. Lett., 42, 4540–4547, 2015.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>
Huffman G. J., Adler R. F., Bolvin D. T., Gu G., Nelkin E. J., Bowman K. P.,
Hong Y., Stocker E. F., and Wolff D. B. The TRMM precipitation analysis
(TMPA): Quasi-global, multiyear, combined-sensor precipitation estimates at
fine scales, J. Hydrometeor., 8, 28–55, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Hunke and Lipscomb(2008)</label><mixed-citation> Hunke, E. C. and Lipscomb, W. H.: CICE: The Los Alamos
Sea Ice Model, Documentation and Software, Version 4.0, Los Alamos National
Laboratory Tech. Rep., Los Alamos, NM, 76 pp., 2008.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Hurrell et al.(2013)</label><mixed-citation> Hurrell, J. W., Holland, M. M., Gent, P. R., Ghan, S., Kay, J. E., Kushner, P. J., Lamarque, J.-F., Large, W. G., Lawrence, D., Lindsay, K., Lipssomb, W. H., Long, M. C., Mahowald, N., Marsh, D. R., Neale, R. B., Rasch, P., Vavrus, S., Vertenstein, M., Bader, D., Collins, W. D., Hack, J. J., Kiehl, J., and Marshall, S.: The Community Earth System Model: a framework for collaborative research, B. Am. Meteorol. Soc., 94, 1339–1360, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Hwang and Frierson(2013)</label><mixed-citation> Hwang, Y.-T. and
Frierson, D. M. W.: Link between the double-Intertropical
Convergence zone problem and cloud biases over the Southern Ocean,
P. Natl. Acad. Sci. USA, 110, 4935–4940, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Iacono et al.(2008)</label><mixed-citation>Iacono, M. J., Delamere, J. S., Mlawer, E. J., Shepard, M. W., Clough, S. A., and Collins, W. D.: Radiative forcing by
long-lived greenhouse gases: calculations with the AER radiative transfer
models, J. Geophys. Res., 113, D13103, <ext-link xlink:href="https://doi.org/10.1029/2008JD009944" ext-link-type="DOI">10.1029/2008JD009944</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Kay et al.(2015)</label><mixed-citation> Kay, J. E., Deser, C., Phillips, A., Mai, A., Hannay, C., Strand, G., Arblaster, J., Bates, S., Danabasoglu, G., Edwards, J., Holland, M., Kushner, P., Lamarque, J.-F., Lawrence, D., Lindsay, K., Middleton, A., Munoz, E., Neale, R., Oleson, K., Polvani, L., and Vertenstein, M.: The Community Earth System (CESM) large ensemble project: a community resource for studying climate change in the presence of internal climate variability, B. Am. Meteorol. Soc., 96, 1333–1349, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Kay et al.(2016)</label><mixed-citation> Kay, J. E., Yettella, V., Medeiros, B., Hannay, C., and Caldwell, P.: Global
climate impacts of fixing the Southern Ocean shortwave radiation bias in the
Community Earth System Model, J. Climate, 29, 4617–4636, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Khairoutdinov and Kogan(2000)</label><mixed-citation> Khairoutdinov, M. F. and Kogan, Y.: A new cloud physics parameterization in a large-eddy simulation model of marine stratocumulus, Mon. Weather Rev., 128, 229–243, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Khairoutdinov et al.(2005)</label><mixed-citation> Khairoutdinov, M. F., Randall, D. A., and Dermott, C.: Simulations of the atmospheric general circulation using a cloud-resolving model as a superparameterization of physical processes, J. Atmos. Sci., 62, 2136–2154, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Larson and Golaz(2005)</label><mixed-citation> Larson, V. E. and Golaz, J.-C.: Using probability density functions to derive consistent closure relationships among higher-order moments, Mon. Weather Rev., 133, 1023–1042, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Larson et al.(2002)</label><mixed-citation> Larson, V. E., Golaz, J.-C., and Cotton, W. R.: Small-scale and mesoscale variability in cloudy boundary layers: joint probability density functions, J. Atmos. Sci., 59, 3519–3539, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Larson et al.(2012)</label><mixed-citation>Larson, V. E., Schanen, D. P., Wang, M., Ovchinnikov, M., and Ghan, S.: PDF parameterization of boundary layer clouds in models with horizontal grid spacings from 2 to 16 <inline-formula><mml:math id="M83" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>, Mon. Weather Rev., 140, 285–306, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Lawrence et al.(2011)</label><mixed-citation>Lawrence, D. M., Oleson, K. W., Flanner, M. G., Thornton, P. E., Swenson, S. C., Lawrence, P. J., Zeng, X., Yang, Z.-L., Levis, S., Sakaguchi, K., Bonan, G. B., and
Slater, A. G.: Parameterization improvements and functional and structural
advances in version 4 of the Community Land Model, J. Adv. Model. Earth Sy.,
3, M03001, <ext-link xlink:href="https://doi.org/10.1029/2011MS000045" ext-link-type="DOI">10.1029/2011MS000045</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Liu et al.(2012)</label><mixed-citation>Liu, X., Easter, R. C., Ghan, S. J., Zaveri, R., Rasch, P., Shi, X., Lamarque, J.-F., Gettelman, A., Morrison, H., Vitt, F., Conley, A., Park, S., Neale, R., Hannay, C., Ekman, A. M. L., Hess, P., Mahowald, N., Collins, W., Iacono, M. J., Bretherton, C. S., Flanner, M. G., and Mitchell, D.: Toward a minimal representation of aerosols in climate models: description and evaluation in the Community Atmosphere Model CAM5, Geosci. Model Dev., 5, 709–739, <ext-link xlink:href="https://doi.org/10.5194/gmd-5-709-2012" ext-link-type="DOI">10.5194/gmd-5-709-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Liu et al.(2015)</label><mixed-citation>Liu, X., Ma, P.-L., Wang, H., Tilmes, S., Singh, B., Easter, R. C., Ghan, S.
J., and Rasch, P. J.: Description and evaluation of a new four-mode version
of the Modal Aerosol Module (MAM4) within version 5.3 of the Community
Atmosphere Model, Geosci. Model Dev., 9, 505–522,
<ext-link xlink:href="https://doi.org/10.5194/gmd-9-505-2016" ext-link-type="DOI">10.5194/gmd-9-505-2016</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Loeb et al.(2009)</label><mixed-citation> Loeb, N. G., Wielicki, B. A., Doelling, D. R., Smith, G. L., Keyes, D. F., Kato, S., Manalo-Smith, N., and Wong, T.: Toward optimal closure of the earth's top-of-atmosphere radiation budget, J. Climate, 22, 748–766, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Lohmann et al.(2010)</label><mixed-citation>Lohmann, U., Rotstayn, L., Storelvmo, T., Jones, A., Menon, S., Quaas, J., Ekman, A. M. L., Koch, D., and Ruedy, R.: Total aerosol effect: radiative forcing or radiative flux perturbation?, Atmos. Chem. Phys., 10, 3235–3246, <ext-link xlink:href="https://doi.org/10.5194/acp-10-3235-2010" ext-link-type="DOI">10.5194/acp-10-3235-2010</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Lumpkin and Speer(2007)</label><mixed-citation> Lumpkin, R., and Speer, K.: Global ocean meridional overturning, J. Phys. Oceanogr., 37, 2550–2562, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Martins et al.(2015)</label><mixed-citation>Martins, G., von Randow, C., Sampaio, G., and Dolman, A. J.: Precipitation in the Amazon and its relationship with moisture transport and tropical Pacific and Atlantic SST from the CMIP5 simulation, Hydrol. Earth Syst. Sci. Discuss., <ext-link xlink:href="https://doi.org/10.5194/hessd-12-671-2015" ext-link-type="DOI">10.5194/hessd-12-671-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Morrison and Gettelman(2008)</label><mixed-citation> Morrison, H. and Gettelman, A.: A new two-moment bulk stratiform cloud microphysics scheme in the Community Atmosphere Model, Version 3 (CAM3), Part I: Description and numerical tests, J. Climate, 21, 3642–3659, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Neale et al.(2008)</label><mixed-citation> Neale, R. B., Richter, J. H., and Jochum, M.: The impact of convection on ENSO: from a delayed oscillator to a series of events, J. Climate, 21, 5904–5924, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Neale et al.(2010)</label><mixed-citation>
Neale, R., Gettelman, A., Park, S., Chen, C.-C., Chen, Lauritzen, P. H.,
Williamson, D. L., Conley, A. J., Kinnison D., Marsh, D., Smith, A. K., Vitt,
F., Garcia, R., Lamarque, J.-F., Mills, M., Tilmes, S., Morrison, H.,
Cameron-Smith, P., Collins, W. D., Iacono, M., J., Easter, R. C., Liu, X.,
Ghan, S. J., Rasch, P. J., and Taylor, M. A.: Description of the NCAR
community atmosphere model (CAM 5.0), NCAR Technical Note, 1, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Neale et al.(2013)</label><mixed-citation> Neale, R. B., Richter, J., Park, S., Lauritzen, P. H., Vavrus, S. J., Rasch, P. J., and Zhang, M.: The mean climate of the Community Atmosphere Model (CAM4) in forced SST and fully coupled experiments, J. Climate, 26, 5150–5168, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Oleson et al.(2010)</label><mixed-citation> Oleson, K. W., Dai, Y., Bonan, G., Bosilovich, M., Dickson, R., Dirmeyer, P., Hoffman, F., Houser, P., Levis, S., Niu, G.-Y., Thornton, P., Vertenstein, M., Yang, Z.-L., and Zeng, X.: Technical description of version 4.0 of the Community Land Model (CLM), NCAR Tech. Note, 257 pp., 2010.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Orsi et al.(1999)</label><mixed-citation> Orsi, A. H., Johnson, G. C., and Bullister, J. L.: Circulation, mixing, and production of Antarctic bottom water, Prog. Oceanogr., 43, 55–109, 1999.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Park and Bretherton(2009)</label><mixed-citation> Park, S. and Bretherton, C. S.: The University of Washington shallow convection and moist turbulence schemes and their impact on climate simulations with the community atmosphere model, J. Climate, 22, 3449–3469, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>Park et al.(2014)</label><mixed-citation> Park, S., Bretherton, C. S., and Rasch, P. J.: Integrating cloud processes in the Community Atmosphere Model, Version 5, J. Climate, 27, 6821–6856, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Quaas et al.(2009)</label><mixed-citation>Quaas, J., Ming, Y., Menon, S., Takemura, T., Wang, M., Penner, J. E., Gettelman, A., Lohmann, U., Bellouin, N., Boucher, O., Sayer, A. M., Thomas, G. E., McComiskey, A., Feingold, G., Hoose, C., Kristjánsson, J. E., Liu, X., Balkanski, Y., Donner, L. J., Ginoux, P. A., Stier, P., Grandey, B., Feichter, J., Sednev, I., Bauer, S. E., Koch, D., Grainger, R. G., Kirkevåg, A., Iversen, T., Seland, Ø., Easter, R., Ghan, S. J., Rasch, P. J., Morrison, H., Lamarque, J.-F., Iacono, M. J., Kinne, S., and Schulz, M.: Aerosol indirect effects – general circulation model intercomparison and evaluation with satellite data, Atmos. Chem. Phys., 9, 8697–8717, <ext-link xlink:href="https://doi.org/10.5194/acp-9-8697-2009" ext-link-type="DOI">10.5194/acp-9-8697-2009</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Rayner et al.(2003)</label><mixed-citation>Rayner, N. A., Parker, D. E., Horton, E. B., Folland, C. K., Alexander, L. V., Rowell, D. P., Kent, E. C., and Kaplan, A.: Global
analyses of sea surface temperature, sea ice, and night marine air
temperature since the late nineteenth century, J. Geophys. Res., 108, D14,
<ext-link xlink:href="https://doi.org/10.1029/2002JD002670" ext-link-type="DOI">10.1029/2002JD002670</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Richter and Rasch(2008)</label><mixed-citation> Richter, J. H. and Rasch, P. J.: Effects of convective momentum transport on the atmospheric circulation in the Community Atmosphere Model, Version 3, J. Climate, 21, 1487–1499, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Seifert and Beheng(2001)</label><mixed-citation> Seifert, A. and Beheng, K. D.: A double-moment parameterization for simulating autoconversion, accretion and self-collection, Atmos. Res., 59, 265–281, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Shi et al.(2015)</label><mixed-citation>Shi, X., Liu, X., and Zhang, K.: Effects of pre-existing ice crystals on cirrus clouds and comparison between different ice nucleation parameterizations with the Community Atmosphere Model (CAM5), Atmos. Chem. Phys., 15, 1503–1520, <ext-link xlink:href="https://doi.org/10.5194/acp-15-1503-2015" ext-link-type="DOI">10.5194/acp-15-1503-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx57"><label>Smith et al.(2010)</label><mixed-citation>
Smith, R. D., Jones, R., Briegleb, B., Bryan, F., Danabasoglu, G., Dennis,
J., Dukowicz, J., Eden, C., Fox-Kemper, B., Gent, P., Hecht, M., Jayne, S.,
Jochum, M., Large, W., Lindsay, K., Maltrud, M., Norton, N., Peacock, S.,
Vertenstein, M., and Yeager, S.: The Parallel Ocean Program (POP) reference
manual: Ocean component of the Community Climate System Model (CCSM) and
Community Earth System Model (CESM), Los Alamos National Laboratory Tech.
Rep., 141 pp., 2010.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>Taylor et al.(2012)</label><mixed-citation> Taylor, K. E., Stouffer, R. J., and Meehl, G. A.: An overview of CMIP5 and the experiment design, B. Am. Meteorol. Soc., 93, 485–498, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>Thayer-Calder et al.(2015)</label><mixed-citation>Thayer-Calder, K., Gettelman, A., Craig, C., Goldhaber, S., Bogenschutz, P. A., Chen, C.-C., Morrison, H., Höft, J., Raut, E., Griffin, B. M., Weber, J. K., Larson, V. E., Wyant, M. C., Wang, M., Guo, Z., and Ghan, S. J.: A unified parameterization of clouds and turbulence using CLUBB and subcolumns in the Community Atmosphere Model, Geosci. Model Dev., 8, 3801–3821, <ext-link xlink:href="https://doi.org/10.5194/gmd-8-3801-2015" ext-link-type="DOI">10.5194/gmd-8-3801-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Wang et al.(2014)</label><mixed-citation>Wang, Y., Liu, X., Hoose, C., and Wang, B.: Different contact angle distributions for heterogeneous ice nucleation in the Community Atmospheric Model version 5, Atmos. Chem. Phys., 14, 10411–10430, <ext-link xlink:href="https://doi.org/10.5194/acp-14-10411-2014" ext-link-type="DOI">10.5194/acp-14-10411-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Wang et al.(2015)</label><mixed-citation> Wang, M., Larson, V. E.,
Ghan, S., Ovchinnikov, M., Schanen, D. P., Xiao, H., Liu, X.,
Rasch, P., and Guo, Z.: A multi scale modeling framework model
(superparameterized CAM5) with a higher-order turbulence closure:
Model description and low-cloud simulations, J. Adv. Model. Earth Sy., 7, 484–509, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Williamson et al.(2015)</label><mixed-citation> Williamson, D. L., Olson, J. G., Hannay, C., Toniazzo, T., Taylor, M., and Yudin, V.: Energy considerations in the Community Atmosphere Model (CAM), J. Adv. Model. Earth Sy., 7, 1178–1188, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx63"><label>Wittenberg(2009)</label><mixed-citation>Wittenberg, A. T.: Are historical records sufficient to constrain ENSO simulations, Geophys. Res. Lett., 36, L12702, <ext-link xlink:href="https://doi.org/10.1029/2009GL038710" ext-link-type="DOI">10.1029/2009GL038710</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx64"><label>Zhang and McFarlane(1995)</label><mixed-citation> Zhang, G. J. and
McFarlane, N. A.: Sensitivity of climate simulations to the
parameterization of cumulus convection in the Canadian Climate
Centre general circulation model, Atmos. Ocean, 33, 407–446, 1995.</mixed-citation></ref>
      <ref id="bib1.bibx65"><label>Zhang and Song(2009)</label><mixed-citation>Zhang, G. J. and Song, X.: Interaction of deep and shallow
convection is key to Madden-Julian Oscillation simulation, Geophys. Res.
Lett., 36, L09708, <ext-link xlink:href="https://doi.org/10.1029/2009GL037340" ext-link-type="DOI">10.1029/2009GL037340</ext-link>, 2009.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>The path to CAM6: coupled simulations with CAM5.4 and CAM5.5</article-title-html>
<abstract-html><p class="p">This paper documents coupled simulations of two developmental
versions of the Community Atmosphere Model (CAM) towards CAM6.  The
configuration called CAM5.4 introduces new microphysics, aerosol,
and ice nucleation changes, among others to CAM.  The CAM5.5
configuration represents a more radical departure, as it uses an
assumed probability density function (PDF)-based unified cloud parameterization to replace the
turbulence, shallow convection, and warm cloud macrophysics in CAM.
This assumed PDF method has been widely used in the last decade in
atmosphere-only climate simulations but has never been documented
in coupled mode.  Here, we compare the simulated coupled climates of
CAM5.4 and CAM5.5 and compare them to the control coupled simulation
produced by CAM5.3.  We find that CAM5.5 has lower cloud forcing
biases when compared to the control simulations.  Improvements are
also seen in the simulated amplitude of the Niño-3.4 index,
an improved representation of the diurnal cycle of precipitation,
subtropical surface wind stresses, and double Intertropical
Convergence Zone biases.  Degradations are seen in Amazon
precipitation as well as slightly colder sea surface temperatures
and thinner Arctic sea ice.  Simulation of the 20th century results
in a credible simulation that ends slightly colder than the control
coupled simulation.  The authors find this is due to aerosol
indirect effects that are slightly stronger in the new version of
the model and propose a solution to ameliorate this.  Overall, in
these early coupled simulations, CAM5.5 produces a credible climate
that is appropriate for science applications and is ready for
integration into the National Center for Atmospheric Research's
(NCAR's) next-generation climate model.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Adler et al.(2003)</label><mixed-citation>
Adler, R. F., Huffman, G. J., Chang, A., Ferraro, R., Xie, P.-P., Janowiak J., Rudolf B., Schneider, U., Curtis, S., Bolvin, D., Gruber, A., Susskind, J., Arkin, P., and Nelkin, E.: The version-2 Global Precipitation Climatology Project (GPCP) monthly precipitation analysis (1979–present), J. Hydrometeorol., 4, 1147–1167, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Albani et al.(2014)</label><mixed-citation>
Albani, S., Mahowald, N. M., Perry, A. T., Scanza, R. A., Zender, C. S., Heavens, N. G., Maggi, V., Kok, J. F., and Otto-Bliesner, B. L.: Improved dust representation in the Community Atmosphere Model, J. Adv. Model. Earth Sy., 6, 541–570, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Andrews et al.(2012)</label><mixed-citation>
Andrews, T., Gregory, J. M., Webb, M. J., and Taylor, K. E.: Forcing, feedbacks and climate sensitivity in CMIP5 coupled atmosphere-ocean climate models, Geophys. Res. Lett., 39, L09712, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Bentamy et al.(1999)</label><mixed-citation> Bentamy, A., Queffeulou, P., Quilfen, Y., and Katsaros, K.: Ocean surface wind fields estimated from satellite active and passive microwave instruments, IEEE T. Geosci. Remote, 37, 2469–2486, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Bogenschutz and Krueger(2013a)</label><mixed-citation> Bogenschutz, P. A. and Krueger, S. K.: A simplified PDF parameterization of subgrid-scale clouds and turbulence for cloud-resolving models, J. Adv. Model. Earth Sy., 5, 195–211, 2013a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Bogenschutz et al.(2013b)</label><mixed-citation> Bogenschutz, P. A., Gettelman, A., Morrison, H., Larson, V. E., Craig, C., and Schanen, D. P.: Higher-order turbulence closure and its impact on climate simulations in the community atmosphere model, J. Climate, 26, 9655–9676, 2013b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>1</label><mixed-citation>
Bogenschutz, P. A.: Dataset for The Path Towards CAM6: Coupled Simulations with CAM5.4 and CAM5.5, available at: <a href="https://doi.org/10.5281/zenodo.815593" target="_blank">https://doi.org/10.5281/zenodo.815593</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Boville and Gent(1998)</label><mixed-citation> Boville, B. A. and Gent, P. R.: The NCAR Climate System Model, version one, J. Climate, 11, 1115–1130, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Bretherton and Park(2009)</label><mixed-citation> Bretherton, C. S. and Park, S.: A new moist turbulence parameterization in the Community Atmosphere Model, J. Climate, 22, 3422–3448, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Buckley and Marshall(2016)</label><mixed-citation> Buckley, M. W. and Marshall, J.: Observations, inferences, and mechanisms of Atlantic Meridional Overturning Circulation variability: a review, Rev. Geophys., 54, 1–59, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Cai et al.(2013)</label><mixed-citation> Cai, Q., Zhang, G. J., and Zhou, T.: Impacts of shallow convection on MJO simulation: a moist static energy and moisture budget analysis, J. Climate, 26, 2417–2431, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Cheng and Xu(2008)</label><mixed-citation> Cheng, A. and Xu, K.-M.: Simulation of boundary-layer cumulus and stratocumulus clouds using a cloud-resolving model with low and third-order turbulence closures, J. Meteorol. Soc. Jpn., 86, 67–86, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Cheng and Xu(2011)</label><mixed-citation> Cheng, A. and Xu, K.-M.: Improved low-cloud simulation from a multiscale modeling framework with a third-order turbulence closure in its cloud resolving model component, J.
Geophys. Res., 115, D14101, <a href="https://doi.org/10.1029/2010JD015362" target="_blank">https://doi.org/10.1029/2010JD015362</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Cheng and Xu(2015)</label><mixed-citation> Cheng, A. and Xu, K.-M.: Improved low-cloud simulation from the Community Atmosphere Model with an advanced third-order turbulence closure, J. Climate, 28, 5737–5762, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Collins et al.(2006)</label><mixed-citation> Collins, W. D., Bitz, C. M., Blackmon, M. L., Bonan, G. B., Bretherton, C. S., Carton, J. A., Chang, P., Doney, S. C., Hack, J. J., Henderson, T. B., Kiehl, J. T., Large, W. G., McKenna, D. S., Santer, B. D., and Smith, R. D.: The Community Climate System Model Version 3 (CCSM3), J. Climate, 19, 2122–2143, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Delworth and Zeng(2008)</label><mixed-citation> Delworth, T. L. and
Zeng, F.: Simulated impact of altered Southern Hemisphere winds on the
Atlantic Meridional Overturning Circulation, Geophys. Res. Lett., 35, L20708,
<a href="https://doi.org/10.1019/2008GL035166" target="_blank">https://doi.org/10.1019/2008GL035166</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Dirmeyer et al.(2011)</label><mixed-citation> Dirmeyer, P. A., Cash, B. A., Kinter, J. L., Jung, T., Marx, L., Satoh, M., Stan, C., Tomita, H., Towers, P., Wedi, N., Achuthavarier, D., Adams, J. M., Altshuler, E. L., Huang, B., Jin, E. K., and Manganello, J.: Simulating the diurnal cycle of rainfall in global climate models: resolution versus parameterization, Clim. Dynam., 39, 399–418, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>2</label><mixed-citation>
Donner, L. J., Bruce. L. W., Hemler, R. S., Horowitz, L. W., Ming, Y., Zhao,
M., Golaz, J.-C., Ginoux, P., Lin, S.-J., Schwarzkopf, M. D., Austin, J.,
Alaka, G., Cooke, W. F., Delworth, T. L., Freidenreich, S. M., Gordon, C. T.,
Griffies, S. M., Held, I. M., Hurlin, W. J., Klein, S. A., Knutson, T. R.,
Langenhorst, A. R., Lee, H.-C., Lin, Y., Magi, B. I., Malyshev, S. L., Milly,
P. C. D., Naik, V., Nath, M. J., Pincus, R., Ploshay, J. J., Ramaswamy, V.,
Seman, C. J., Shevliakova, E., Sirutis, J. J., Stern, W. F., Stouffer, R. J., Wilson, R.
J., Winton, W., Wittengerg, A. T., and Zeng, F.: The dynamical core, physical
parameterizations, and basic simulation characteristics of the atmospheric
component AM3 of the GFDL global Coupled Model CM3, J. Climate, 24,
3484–3519, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Gent et al.(2011)</label><mixed-citation> Gent, P. R., Danabasoglu, G., Donner, L. J., Holland, M. K., Hunke, E. C., Jayne, S. R., Lawrence, D. M., Neale, R. B., Rasch, P. J., Vertenstein, M., Worley, P. H., Yang, Z.-L., and Zhang, M.: The Community Climate System Model Version 4, J. Climate, 24, 4973–4991, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Gettelman(2015)</label><mixed-citation>
Gettelman, A.: Putting the clouds back in aerosol–cloud interactions, Atmos. Chem. Phys., 15, 12397–12411, <a href="https://doi.org/10.5194/acp-15-12397-2015" target="_blank">https://doi.org/10.5194/acp-15-12397-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>3</label><mixed-citation>
Gettelman, A. and Morrison H., Advanced Two-Moment bulk microphysics for
global models. Part I: Off-line tests and comparison with other schemes, J.
Climate, 28, 1268–1287, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Gettelman and Morrison(2015)</label><mixed-citation> Gettelman, A. and Morrison, H.: Advanced two-moment bulk microphysics for global models, Part I: Off-line tests and comparison with other schemes, J. Climate, 28, 1268–1287, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Gettelman et al.(2010)</label><mixed-citation> Gettelman, A., Liu, X., Ghan, S., Morrison, H., Park, S., Conley, A. J., Klein, S. A., Boyle, J., Mitchell, D. L., and Li, J.-L. F.: Global simulations of ice nucleation
and ice supersaturation with an improved cloud scheme in the Community
Atmosphere Model, J. Geophys. Res., 115, D18216, <a href="https://doi.org/10.1029/2009JD013797" target="_blank">https://doi.org/10.1029/2009JD013797</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Gettelman et al.(2012)</label><mixed-citation> Gettelman, A., Kay, J. E., and Shell, K. M.: The evolution of climate feedbacks in the Community Atmosphere Model, J. Climate, 25, 1453–1469, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Gettelman et al.(2015)</label><mixed-citation> Gettelman, A., Morrison, H., Santos, S., Bogenschutz, P., and Caldwell, P. M.: Advanced two-moment bulk microphysics for global models, Part II: Global model solutions and aerosol-cloud interactions, J. Climate, 28, 1288–1307, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Golaz et al.(2002)</label><mixed-citation> Golaz, J.-C., Larson, V. E., and Cotton, W. R.: A pdf-based model for boundary layer clouds part I: Method and model description, J. Atmos. Sci., 59, 3540–3551, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Guo et al.(2014)</label><mixed-citation> Guo, H., Golaz, J.-C., Donner, L. J., Ginoux, P., and Hemler, R. S.: Multi-variate probability density functions with dynamics in the GFDL atmospheric general circulation model: Global Tests, J. Climate, 27, 2087–2108, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Guo et al.(2015)</label><mixed-citation> Guo, H., Golaz, J.-C., Donner, L. J., Wyman, B., Zhao, M., and Ginoux, P.: CLUBB as a unified cloud parameterization: opportunities and challenges, Geophys. Res. Lett., 42, 4540–4547, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>4</label><mixed-citation>
Huffman G. J., Adler R. F., Bolvin D. T., Gu G., Nelkin E. J., Bowman K. P.,
Hong Y., Stocker E. F., and Wolff D. B. The TRMM precipitation analysis
(TMPA): Quasi-global, multiyear, combined-sensor precipitation estimates at
fine scales, J. Hydrometeor., 8, 28–55, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Hunke and Lipscomb(2008)</label><mixed-citation> Hunke, E. C. and Lipscomb, W. H.: CICE: The Los Alamos
Sea Ice Model, Documentation and Software, Version 4.0, Los Alamos National
Laboratory Tech. Rep., Los Alamos, NM, 76 pp., 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Hurrell et al.(2013)</label><mixed-citation> Hurrell, J. W., Holland, M. M., Gent, P. R., Ghan, S., Kay, J. E., Kushner, P. J., Lamarque, J.-F., Large, W. G., Lawrence, D., Lindsay, K., Lipssomb, W. H., Long, M. C., Mahowald, N., Marsh, D. R., Neale, R. B., Rasch, P., Vavrus, S., Vertenstein, M., Bader, D., Collins, W. D., Hack, J. J., Kiehl, J., and Marshall, S.: The Community Earth System Model: a framework for collaborative research, B. Am. Meteorol. Soc., 94, 1339–1360, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Hwang and Frierson(2013)</label><mixed-citation> Hwang, Y.-T. and
Frierson, D. M. W.: Link between the double-Intertropical
Convergence zone problem and cloud biases over the Southern Ocean,
P. Natl. Acad. Sci. USA, 110, 4935–4940, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Iacono et al.(2008)</label><mixed-citation> Iacono, M. J., Delamere, J. S., Mlawer, E. J., Shepard, M. W., Clough, S. A., and Collins, W. D.: Radiative forcing by
long-lived greenhouse gases: calculations with the AER radiative transfer
models, J. Geophys. Res., 113, D13103, <a href="https://doi.org/10.1029/2008JD009944" target="_blank">https://doi.org/10.1029/2008JD009944</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Kay et al.(2015)</label><mixed-citation> Kay, J. E., Deser, C., Phillips, A., Mai, A., Hannay, C., Strand, G., Arblaster, J., Bates, S., Danabasoglu, G., Edwards, J., Holland, M., Kushner, P., Lamarque, J.-F., Lawrence, D., Lindsay, K., Middleton, A., Munoz, E., Neale, R., Oleson, K., Polvani, L., and Vertenstein, M.: The Community Earth System (CESM) large ensemble project: a community resource for studying climate change in the presence of internal climate variability, B. Am. Meteorol. Soc., 96, 1333–1349, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Kay et al.(2016)</label><mixed-citation> Kay, J. E., Yettella, V., Medeiros, B., Hannay, C., and Caldwell, P.: Global
climate impacts of fixing the Southern Ocean shortwave radiation bias in the
Community Earth System Model, J. Climate, 29, 4617–4636, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Khairoutdinov and Kogan(2000)</label><mixed-citation> Khairoutdinov, M. F. and Kogan, Y.: A new cloud physics parameterization in a large-eddy simulation model of marine stratocumulus, Mon. Weather Rev., 128, 229–243, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Khairoutdinov et al.(2005)</label><mixed-citation> Khairoutdinov, M. F., Randall, D. A., and Dermott, C.: Simulations of the atmospheric general circulation using a cloud-resolving model as a superparameterization of physical processes, J. Atmos. Sci., 62, 2136–2154, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Larson and Golaz(2005)</label><mixed-citation> Larson, V. E. and Golaz, J.-C.: Using probability density functions to derive consistent closure relationships among higher-order moments, Mon. Weather Rev., 133, 1023–1042, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Larson et al.(2002)</label><mixed-citation> Larson, V. E., Golaz, J.-C., and Cotton, W. R.: Small-scale and mesoscale variability in cloudy boundary layers: joint probability density functions, J. Atmos. Sci., 59, 3519–3539, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Larson et al.(2012)</label><mixed-citation> Larson, V. E., Schanen, D. P., Wang, M., Ovchinnikov, M., and Ghan, S.: PDF parameterization of boundary layer clouds in models with horizontal grid spacings from 2 to 16 km, Mon. Weather Rev., 140, 285–306, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Lawrence et al.(2011)</label><mixed-citation> Lawrence, D. M., Oleson, K. W., Flanner, M. G., Thornton, P. E., Swenson, S. C., Lawrence, P. J., Zeng, X., Yang, Z.-L., Levis, S., Sakaguchi, K., Bonan, G. B., and
Slater, A. G.: Parameterization improvements and functional and structural
advances in version 4 of the Community Land Model, J. Adv. Model. Earth Sy.,
3, M03001, <a href="https://doi.org/10.1029/2011MS000045" target="_blank">https://doi.org/10.1029/2011MS000045</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Liu et al.(2012)</label><mixed-citation>
Liu, X., Easter, R. C., Ghan, S. J., Zaveri, R., Rasch, P., Shi, X., Lamarque, J.-F., Gettelman, A., Morrison, H., Vitt, F., Conley, A., Park, S., Neale, R., Hannay, C., Ekman, A. M. L., Hess, P., Mahowald, N., Collins, W., Iacono, M. J., Bretherton, C. S., Flanner, M. G., and Mitchell, D.: Toward a minimal representation of aerosols in climate models: description and evaluation in the Community Atmosphere Model CAM5, Geosci. Model Dev., 5, 709–739, <a href="https://doi.org/10.5194/gmd-5-709-2012" target="_blank">https://doi.org/10.5194/gmd-5-709-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Liu et al.(2015)</label><mixed-citation>
Liu, X., Ma, P.-L., Wang, H., Tilmes, S., Singh, B., Easter, R. C., Ghan, S.
J., and Rasch, P. J.: Description and evaluation of a new four-mode version
of the Modal Aerosol Module (MAM4) within version 5.3 of the Community
Atmosphere Model, Geosci. Model Dev., 9, 505–522,
<a href="https://doi.org/10.5194/gmd-9-505-2016" target="_blank">https://doi.org/10.5194/gmd-9-505-2016</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Loeb et al.(2009)</label><mixed-citation> Loeb, N. G., Wielicki, B. A., Doelling, D. R., Smith, G. L., Keyes, D. F., Kato, S., Manalo-Smith, N., and Wong, T.: Toward optimal closure of the earth's top-of-atmosphere radiation budget, J. Climate, 22, 748–766, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Lohmann et al.(2010)</label><mixed-citation>
Lohmann, U., Rotstayn, L., Storelvmo, T., Jones, A., Menon, S., Quaas, J., Ekman, A. M. L., Koch, D., and Ruedy, R.: Total aerosol effect: radiative forcing or radiative flux perturbation?, Atmos. Chem. Phys., 10, 3235–3246, <a href="https://doi.org/10.5194/acp-10-3235-2010" target="_blank">https://doi.org/10.5194/acp-10-3235-2010</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Lumpkin and Speer(2007)</label><mixed-citation> Lumpkin, R., and Speer, K.: Global ocean meridional overturning, J. Phys. Oceanogr., 37, 2550–2562, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Martins et al.(2015)</label><mixed-citation>
Martins, G., von Randow, C., Sampaio, G., and Dolman, A. J.: Precipitation in the Amazon and its relationship with moisture transport and tropical Pacific and Atlantic SST from the CMIP5 simulation, Hydrol. Earth Syst. Sci. Discuss., <a href="https://doi.org/10.5194/hessd-12-671-2015" target="_blank">https://doi.org/10.5194/hessd-12-671-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Morrison and Gettelman(2008)</label><mixed-citation> Morrison, H. and Gettelman, A.: A new two-moment bulk stratiform cloud microphysics scheme in the Community Atmosphere Model, Version 3 (CAM3), Part I: Description and numerical tests, J. Climate, 21, 3642–3659, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Neale et al.(2008)</label><mixed-citation> Neale, R. B., Richter, J. H., and Jochum, M.: The impact of convection on ENSO: from a delayed oscillator to a series of events, J. Climate, 21, 5904–5924, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Neale et al.(2010)</label><mixed-citation>
Neale, R., Gettelman, A., Park, S., Chen, C.-C., Chen, Lauritzen, P. H.,
Williamson, D. L., Conley, A. J., Kinnison D., Marsh, D., Smith, A. K., Vitt,
F., Garcia, R., Lamarque, J.-F., Mills, M., Tilmes, S., Morrison, H.,
Cameron-Smith, P., Collins, W. D., Iacono, M., J., Easter, R. C., Liu, X.,
Ghan, S. J., Rasch, P. J., and Taylor, M. A.: Description of the NCAR
community atmosphere model (CAM 5.0), NCAR Technical Note, 1, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>Neale et al.(2013)</label><mixed-citation> Neale, R. B., Richter, J., Park, S., Lauritzen, P. H., Vavrus, S. J., Rasch, P. J., and Zhang, M.: The mean climate of the Community Atmosphere Model (CAM4) in forced SST and fully coupled experiments, J. Climate, 26, 5150–5168, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Oleson et al.(2010)</label><mixed-citation> Oleson, K. W., Dai, Y., Bonan, G., Bosilovich, M., Dickson, R., Dirmeyer, P., Hoffman, F., Houser, P., Levis, S., Niu, G.-Y., Thornton, P., Vertenstein, M., Yang, Z.-L., and Zeng, X.: Technical description of version 4.0 of the Community Land Model (CLM), NCAR Tech. Note, 257 pp., 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Orsi et al.(1999)</label><mixed-citation> Orsi, A. H., Johnson, G. C., and Bullister, J. L.: Circulation, mixing, and production of Antarctic bottom water, Prog. Oceanogr., 43, 55–109, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Park and Bretherton(2009)</label><mixed-citation> Park, S. and Bretherton, C. S.: The University of Washington shallow convection and moist turbulence schemes and their impact on climate simulations with the community atmosphere model, J. Climate, 22, 3449–3469, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Park et al.(2014)</label><mixed-citation> Park, S., Bretherton, C. S., and Rasch, P. J.: Integrating cloud processes in the Community Atmosphere Model, Version 5, J. Climate, 27, 6821–6856, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Quaas et al.(2009)</label><mixed-citation>
Quaas, J., Ming, Y., Menon, S., Takemura, T., Wang, M., Penner, J. E., Gettelman, A., Lohmann, U., Bellouin, N., Boucher, O., Sayer, A. M., Thomas, G. E., McComiskey, A., Feingold, G., Hoose, C., Kristjánsson, J. E., Liu, X., Balkanski, Y., Donner, L. J., Ginoux, P. A., Stier, P., Grandey, B., Feichter, J., Sednev, I., Bauer, S. E., Koch, D., Grainger, R. G., Kirkevåg, A., Iversen, T., Seland, Ø., Easter, R., Ghan, S. J., Rasch, P. J., Morrison, H., Lamarque, J.-F., Iacono, M. J., Kinne, S., and Schulz, M.: Aerosol indirect effects – general circulation model intercomparison and evaluation with satellite data, Atmos. Chem. Phys., 9, 8697–8717, <a href="https://doi.org/10.5194/acp-9-8697-2009" target="_blank">https://doi.org/10.5194/acp-9-8697-2009</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Rayner et al.(2003)</label><mixed-citation> Rayner, N. A., Parker, D. E., Horton, E. B., Folland, C. K., Alexander, L. V., Rowell, D. P., Kent, E. C., and Kaplan, A.: Global
analyses of sea surface temperature, sea ice, and night marine air
temperature since the late nineteenth century, J. Geophys. Res., 108, D14,
<a href="https://doi.org/10.1029/2002JD002670" target="_blank">https://doi.org/10.1029/2002JD002670</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>Richter and Rasch(2008)</label><mixed-citation> Richter, J. H. and Rasch, P. J.: Effects of convective momentum transport on the atmospheric circulation in the Community Atmosphere Model, Version 3, J. Climate, 21, 1487–1499, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>Seifert and Beheng(2001)</label><mixed-citation> Seifert, A. and Beheng, K. D.: A double-moment parameterization for simulating autoconversion, accretion and self-collection, Atmos. Res., 59, 265–281, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Shi et al.(2015)</label><mixed-citation>
Shi, X., Liu, X., and Zhang, K.: Effects of pre-existing ice crystals on cirrus clouds and comparison between different ice nucleation parameterizations with the Community Atmosphere Model (CAM5), Atmos. Chem. Phys., 15, 1503–1520, <a href="https://doi.org/10.5194/acp-15-1503-2015" target="_blank">https://doi.org/10.5194/acp-15-1503-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Smith et al.(2010)</label><mixed-citation>
Smith, R. D., Jones, R., Briegleb, B., Bryan, F., Danabasoglu, G., Dennis,
J., Dukowicz, J., Eden, C., Fox-Kemper, B., Gent, P., Hecht, M., Jayne, S.,
Jochum, M., Large, W., Lindsay, K., Maltrud, M., Norton, N., Peacock, S.,
Vertenstein, M., and Yeager, S.: The Parallel Ocean Program (POP) reference
manual: Ocean component of the Community Climate System Model (CCSM) and
Community Earth System Model (CESM), Los Alamos National Laboratory Tech.
Rep., 141 pp., 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Taylor et al.(2012)</label><mixed-citation> Taylor, K. E., Stouffer, R. J., and Meehl, G. A.: An overview of CMIP5 and the experiment design, B. Am. Meteorol. Soc., 93, 485–498, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>Thayer-Calder et al.(2015)</label><mixed-citation>
Thayer-Calder, K., Gettelman, A., Craig, C., Goldhaber, S., Bogenschutz, P. A., Chen, C.-C., Morrison, H., Höft, J., Raut, E., Griffin, B. M., Weber, J. K., Larson, V. E., Wyant, M. C., Wang, M., Guo, Z., and Ghan, S. J.: A unified parameterization of clouds and turbulence using CLUBB and subcolumns in the Community Atmosphere Model, Geosci. Model Dev., 8, 3801–3821, <a href="https://doi.org/10.5194/gmd-8-3801-2015" target="_blank">https://doi.org/10.5194/gmd-8-3801-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>Wang et al.(2014)</label><mixed-citation>
Wang, Y., Liu, X., Hoose, C., and Wang, B.: Different contact angle distributions for heterogeneous ice nucleation in the Community Atmospheric Model version 5, Atmos. Chem. Phys., 14, 10411–10430, <a href="https://doi.org/10.5194/acp-14-10411-2014" target="_blank">https://doi.org/10.5194/acp-14-10411-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>Wang et al.(2015)</label><mixed-citation> Wang, M., Larson, V. E.,
Ghan, S., Ovchinnikov, M., Schanen, D. P., Xiao, H., Liu, X.,
Rasch, P., and Guo, Z.: A multi scale modeling framework model
(superparameterized CAM5) with a higher-order turbulence closure:
Model description and low-cloud simulations, J. Adv. Model. Earth Sy., 7, 484–509, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>Williamson et al.(2015)</label><mixed-citation> Williamson, D. L., Olson, J. G., Hannay, C., Toniazzo, T., Taylor, M., and Yudin, V.: Energy considerations in the Community Atmosphere Model (CAM), J. Adv. Model. Earth Sy., 7, 1178–1188, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>Wittenberg(2009)</label><mixed-citation> Wittenberg, A. T.: Are historical records sufficient to constrain ENSO simulations, Geophys. Res. Lett., 36, L12702, <a href="https://doi.org/10.1029/2009GL038710" target="_blank">https://doi.org/10.1029/2009GL038710</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>Zhang and McFarlane(1995)</label><mixed-citation> Zhang, G. J. and
McFarlane, N. A.: Sensitivity of climate simulations to the
parameterization of cumulus convection in the Canadian Climate
Centre general circulation model, Atmos. Ocean, 33, 407–446, 1995.
</mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>Zhang and Song(2009)</label><mixed-citation> Zhang, G. J. and Song, X.: Interaction of deep and shallow
convection is key to Madden-Julian Oscillation simulation, Geophys. Res.
Lett., 36, L09708, <a href="https://doi.org/10.1029/2009GL037340" target="_blank">https://doi.org/10.1029/2009GL037340</a>, 2009.
</mixed-citation></ref-html>--></article>
