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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">GMD</journal-id>
<journal-title-group>
<journal-title>Geoscientific Model Development</journal-title>
<abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Geosci. Model Dev.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1991-9603</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/gmd-10-169-2017</article-id><title-group><article-title>UCLALES–SALSA v1.0: a large-eddy model with interactive sectional microphysics for aerosol, clouds and precipitation</article-title>
      </title-group><?xmltex \runningtitle{UCLALES--SALSA}?><?xmltex \runningauthor{J. Tonttila et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Tonttila</surname><given-names>Juha</given-names></name>
          <email>juha.tonttila@fmi.fi</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Maalick</surname><given-names>Zubair</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Raatikainen</surname><given-names>Tomi</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2603-516X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Kokkola</surname><given-names>Harri</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1404-6670</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff4">
          <name><surname>Kühn</surname><given-names>Thomas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5978-0601</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Romakkaniemi</surname><given-names>Sami</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9414-3093</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Karlsruhe Institute of Technology, Karlsruhe, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Finnish Meteorological Institute, Atmospheric Research Centre of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Finnish Meteorological Institute, P.O. Box 503, 00101 Helsinki, Finland</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Department of Applied Physics, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Juha Tonttila (juha.tonttila@fmi.fi)</corresp></author-notes><pub-date><day>13</day><month>January</month><year>2017</year></pub-date>
      
      <volume>10</volume>
      <issue>1</issue>
      <fpage>169</fpage><lpage>188</lpage>
      <history>
        <date date-type="received"><day>23</day><month>June</month><year>2016</year></date>
           <date date-type="rev-request"><day>6</day><month>July</month><year>2016</year></date>
           <date date-type="rev-recd"><day>23</day><month>November</month><year>2016</year></date>
           <date date-type="accepted"><day>9</day><month>December</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017.html">This article is available from https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017.html</self-uri>
<self-uri xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017.pdf">The full text article is available as a PDF file from https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017.pdf</self-uri>


      <abstract>
    <p>Challenges in understanding the aerosol–cloud interactions and their impacts
on global climate highlight the need for improved knowledge of the underlying
physical processes and feedbacks as well as their interactions with cloud and
boundary layer dynamics. To pursue this goal, increasingly sophisticated
cloud-scale models are needed to complement the limited supply of
observations of the interactions between aerosols and clouds. For this
purpose, a new large-eddy simulation (LES) model, coupled with an interactive
sectional description for aerosols and clouds, is introduced. The new model
builds and extends upon the well-characterized UCLA Large-Eddy Simulation
Code (UCLALES) and the Sectional Aerosol module for Large-Scale Applications
(SALSA), hereafter denoted as UCLALES-SALSA. Novel strategies for the
aerosol, cloud and precipitation bin discretisation are presented. These
enable tracking the effects of cloud processing and wet scavenging on the
aerosol size distribution as accurately as possible, while keeping the
computational cost of the model as low as possible. The model is tested with
two different simulation set-ups: a marine stratocumulus case in the
DYCOMS-II campaign and another case focusing on the formation and evolution
of a nocturnal radiation fog. It is shown that, in both cases, the
size-resolved interactions between aerosols and clouds have a critical
influence on the dynamics of the boundary layer. The results demonstrate the
importance of accurately representing the wet scavenging of aerosol in the
model. Specifically, in a case with marine stratocumulus, precipitation and
the subsequent removal of cloud activating particles lead to thinning of the
cloud deck and the formation of a decoupled boundary layer structure. In
radiation fog, the growth and sedimentation of droplets strongly affect their
radiative properties, which in turn drive new droplet formation. The
size-resolved diagnostics provided by the model enable investigations of
these issues with high detail. It is also shown that the results remain
consistent with UCLALES (without SALSA) in cases where the dominating
physical processes remain well represented by both models.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Large-eddy simulations (LES) have been used to study the properties of clouds
and the boundary layer for a few decades
<xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx11 bib1.bibx36 bib1.bibx50" id="paren.1"><named-content content-type="pre">e.g.</named-content></xref>. These
models solve the low-pass filtered Navier–Stokes equations; i.e. the large
energy-containing turbulent eddies are resolved, whereas the smallest length
scales and energy dissipation are parameterised typically using closures
based on the Smagorinsky model. This approach provides an attractive
compromise between accuracy and computational cost, which is why LES models
have become popular in studies of the properties of boundary layers and
clouds.</p>
      <p>The typical grid resolution used in LES models (on the order of tens of
metres) enables a detailed representation of cloud structure and dynamics.
However, the treatment of cloud microphysics is subject to high variability
in terms of the level of detail and computational cost <xref ref-type="bibr" rid="bib1.bibx26" id="paren.2"/>. The
types of microphysical schemes and their implementation to LES models range
from simple one or two moment bulk schemes, where droplet mass is predicted
typically through saturation adjustment, with either prescribed or varying
droplet number concentrations
<xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx18 bib1.bibx46 bib1.bibx47 bib1.bibx50 bib1.bibx45" id="paren.3"/>,
to more elaborate ones with modal or sectional representations for the
droplet size distributions <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx13 bib1.bibx44" id="paren.4"/> and
Lagrangian particle-based methods <xref ref-type="bibr" rid="bib1.bibx48" id="paren.5"/>. In addition, there has
been an increasing trend towards including representations for aerosol
particles in these models as well <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx25 bib1.bibx34" id="paren.6"/>.
However, extensive simulations with more detailed and explicitly interactive
aerosol–cloud schemes are as of yet relatively sparse, mostly due to their
high computational cost. Nevertheless, some examples of such developments
include the work of
<xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx39 bib1.bibx25 bib1.bibx32 bib1.bibx57" id="paren.7"/>.</p>
      <p>The need for such models is well recognised due to the significant challenges
in climate modelling imposed by aerosols and clouds <xref ref-type="bibr" rid="bib1.bibx7" id="paren.8"/>,
where detailed LES model simulations comprise an essential resource for
parameterisation development. In particular, formation of drizzle and wet
scavenging of aerosol and the associated feedback processes are potentially
very important for the dynamics and circulation structures of marine
stratocumulus clouds <xref ref-type="bibr" rid="bib1.bibx58 bib1.bibx61 bib1.bibx63 bib1.bibx55" id="paren.9"/>. Correctly
capturing the interactions between aerosol–cloud microphysics and cloud
dynamics requires highly detailed microphysical schemes. Moreover, scavenging
processes, depending on particle composition and size, are overall rather
poorly understood and therefore poorly represented in general circulation
models <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx9" id="paren.10"/>. Yet, wet scavenging of aerosol may
crucially affect, e.g., the transport of black carbon aerosol from polluted
environments to the polar areas <xref ref-type="bibr" rid="bib1.bibx16" id="paren.11"/>, where it has the
potential to significantly affect the future change in arctic temperatures.
The main motivation for the LES model development presented in the current
paper is indeed to provide a new tool for a better understanding of the above-mentioned climate-relevant processes, so that they can eventually be more
robustly represented in global models.</p>
      <p>Besides cloud processes, another set of topics under research by the LES
community is related to the formation and evolution of fog and the effects
of aerosols therein. During the last decades, a clear decrease has been
observed in fog occurrence throughout central Europe
<xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx19" id="paren.12"/>. This has occurred together with improved
air quality due to a decreasing trend in sulfur emissions, especially in the
case of dense fog, but thus far a quantitative connection has not been
established <xref ref-type="bibr" rid="bib1.bibx38" id="paren.13"/>. Although in many ways driven by the same
principles as clouds, fog also feature many unique aspects considering their
evolution <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx20" id="paren.14"/>. For example, while cloud
droplets are mainly formed at the height of the peak saturation ratio at
cloud base, in radiation fog, one of the most common fog types, the droplet
formation is primarily driven by radiative cooling at the top of the
developing fog layer or by high supersaturation inside the fog induced by
turbulence. Thus, there are also marked differences related to the dynamics of
the fog layer and its life cycle as compared to clouds <xref ref-type="bibr" rid="bib1.bibx40" id="paren.15"/>.
Fog properties and their occurrence are strongly affected by aerosol
properties and anthropogenic emissions
<xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx28 bib1.bibx54 bib1.bibx34" id="paren.16"/>, although many of the
details of these interactions remain poorly understood. Improved knowledge
can be pursued through increasingly sophisticated microphysical schemes
embedded in LES models. Thus, a case comprising a radiation fog event serves
as a well-justified test bed for the model presented in this paper.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Schematic representation of the bin system and processes included in
the extended SALSA module. Aerosol bins (green) cover the size range from
3 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> to 10 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, separated into bin regimes 1a, 2a and 2b
(see text). Cloud droplet bins (light blue) are parallel to the aerosol bins
in terms of the dry CCN diameter above 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> (i.e. the aerosol bin
regime 2a,b). Precipitation bins (dark blue), defined according to the wet
diameter of the droplet, cover the size range between 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m and
2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">mm</mml:mi></mml:math></inline-formula>.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f01.pdf"/>

      </fig>

      <p>Here, an innovative approach is proposed to treat the microphysical
interactions between aerosols and clouds as well as their impacts on boundary
layer dynamics within a high-resolution LES model while keeping the model
computationally feasible for long simulation times (few days) and large model
domains (tens of kilometres). We build and extend upon a state-of-the-art LES
model and a sectional microphysical model <xref ref-type="bibr" rid="bib1.bibx50 bib1.bibx29" id="paren.17"/> to
create a cloud-resolving framework, where the size distributions of aerosol,
clouds and precipitation are all described with a detailed sectional
approach. In particular, the model introduced in this work accurately
preserves the characteristics of the aerosol size distribution both inside and
outside of clouds, making it ideal for studying the impact of removal
processes, cloud processing and evaporation on the particle size
distribution, as well as the associated feedbacks on cloud properties,
precipitation formation and boundary layer dynamics. The model is evaluated
by experimenting on two very different cases: one comprising marine
stratocumulus clouds based on the DYCOMS-II dataset <xref ref-type="bibr" rid="bib1.bibx49" id="paren.18"/>, and
another focusing on a radiation fog event based on the findings of
<xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx41" id="paren.19"/>. The results are compared with earlier studies
and models with a simple bulk microphysics scheme, and similarities and
differences are analysed and explained in detail.</p>
      <p>The new model is described in detail in Sect. 2 while case descriptions and
results for the marine stratocumulus and fog cases are documented in Sects. 3
and 4, respectively. Discussion of the model performance and conclusions
drawn from the results are reported in Sect. 5. <?xmltex \hack{\newpage}?></p>
</sec>
<sec id="Ch1.S2">
  <title>Model description</title>
<sec id="Ch1.S2.SS1">
  <title>The extended SALSA module</title>
      <p>The Sectional Aerosol module for Large-Scale Applications (SALSA;
<xref ref-type="bibr" rid="bib1.bibx29" id="altparen.20"/>) is used as the basis for developing a unified
sectional microphysical model for aerosols, clouds and precipitation. The
SALSA module, previously employed in the ECHAM <xref ref-type="bibr" rid="bib1.bibx52" id="paren.21"/> climate
model family, discretises the aerosol size distribution into 10 size bins
according to the dry particle diameter <xref ref-type="bibr" rid="bib1.bibx5" id="paren.22"/> as shown in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>. The predicted variables for each bin are the
aerosol number and compound masses as well as the mass of condensed water,
which can be used to determine the bin mean wet particle size. The total
diameter range covered by the bins (from 3 nm to 10 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m by
default) is divided into subranges, 1a and 2a. This division into subranges
aims at minimising the number of tracer variables. This is achieved by
including only those chemical compounds that are significantly abundant in
each subrange. Subrange 1a covers the three smallest bins (up to 50 nm)
and the particles are assumed to be internally mixed, being composed of
sulfate and organic carbon, which contribute to the growth of newly formed
particles. Subrange 2a includes particles larger than <inline-formula><mml:math display="inline"><mml:mn>50</mml:mn></mml:math></inline-formula> nm, whose
composition may comprise all the chemical compounds in the model. The module
can be configured to include seven additional bins (designated 2b) parallel to
the bin regime 2a (i.e. same bin diameters), which allow for the description of
externally mixed particle populations. In a typical example, soluble
compounds would be emitted to 2a and insoluble compounds to 2b. The spacing
of the size bins is set logarithmically equidistant within each of the
subranges. Further details about the bin discretisation can also be found in
<xref ref-type="bibr" rid="bib1.bibx31" id="text.23"/>. With these settings, the spectral resolution is quite
coarse, but does provide a good compromise between computational cost and
model performance. Note, however, that the numbers given here represent the
default settings – the number of bins can be set to be larger, if necessary.</p>
      <p>The SALSA module includes detailed methods for solving the key microphysical
processes, which are called sequentially. Coagulation is modelled based on the
equations in <xref ref-type="bibr" rid="bib1.bibx22" id="text.24"/>. For a particle number this is given as
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>J</mml:mi></mml:munderover><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>
          and, similarly, for a volume concentration
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>v</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>v</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:munderover><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>v</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mi>h</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>J</mml:mi></mml:munderover><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          In the above equations, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the total coagulation kernel for the
colliding particles in bins <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the particle number
concentration in bin <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> at time step <inline-formula><mml:math display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> refers to the previous
time step), <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>v</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the volume concentration, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> the length of
the time step and <inline-formula><mml:math display="inline"><mml:mi>J</mml:mi></mml:math></inline-formula> is the total number of particle bins. Please note that
the bin indices <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="normal">…</mml:mi><mml:mi>J</mml:mi></mml:mrow></mml:math></inline-formula> should be interpreted to cover all the bins of
all particle categories in the model (aerosol, clouds, precipitation) sorted
by increasing particle size.</p>
      <p>For coagulation kernels with aerosol particles, we assume Brownian
coagulation, whose kernel in the continuum regime is given as
            <disp-formula id="Ch1.E3" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>B</mml:mtext></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">π</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mtext>p</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mtext>p</mml:mtext><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the diameters of the colliding particles and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mtext>p</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mtext>p</mml:mtext><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> their corresponding diffusion
coefficients. For the transition regime, the formula by <xref ref-type="bibr" rid="bib1.bibx15" id="text.25"/> is
used. For larger particles, i.e. cloud droplets and precipitation, the
convective enhancement of Brownian coagulation and gravitational collection
are also included, and given as
            <disp-formula id="Ch1.E4" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>BC</mml:mtext></mml:msubsup><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable class="cases" columnspacing="1em" rowspacing="0.2ex" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>B</mml:mtext></mml:msubsup><mml:mn>0.45</mml:mn><mml:mi>R</mml:mi><mml:msubsup><mml:mi>e</mml:mi><mml:mi>j</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msubsup><mml:mi>S</mml:mi><mml:msubsup><mml:mi>c</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>R</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>≥</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>B</mml:mtext></mml:msubsup><mml:mn>0.45</mml:mn><mml:mi>R</mml:mi><mml:msubsup><mml:mi>e</mml:mi><mml:mi>j</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup><mml:mi>S</mml:mi><mml:msubsup><mml:mi>c</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>R</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>≥</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:math></disp-formula>
          and
            <disp-formula id="Ch1.E5" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>GC</mml:mtext></mml:msubsup><mml:mo>=</mml:mo><mml:msubsup><mml:mi>E</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>c</mml:mtext></mml:msubsup><mml:mi mathvariant="italic">π</mml:mi><mml:msup><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>|</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>f</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>f</mml:mtext><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>|</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          respectively <xref ref-type="bibr" rid="bib1.bibx22" id="paren.26"/>. In the above equations, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
particle Schmidt number, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:msub><mml:mi>e</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the Reynolds number, <inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi>E</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>c</mml:mtext></mml:msubsup></mml:mrow></mml:math></inline-formula> is
the collection efficiency and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>f</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the particle fall speed.
The latter is parameterised as
            <disp-formula id="Ch1.E6" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>f</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="cases" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msubsup><mml:mi>d</mml:mi><mml:mi>i</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>p</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mi>g</mml:mi><mml:mi mathvariant="italic">β</mml:mi></mml:mrow><mml:mrow><mml:mn>18</mml:mn><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mtd><mml:mtd><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mn>40</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>a,ref</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>≥</mml:mo><mml:mn>40</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>p</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the particle/droplet density and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is
the air density. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>a,ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is a reference air density (given at the
standard conditions for temperature and pressure, 273.15 K and 1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">hPa</mml:mi></mml:math></inline-formula>), <inline-formula><mml:math display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> is the gravitational
acceleration, <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> is the dynamic viscosity of air and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> is the
Cunningham slip correction factor. The total coagulation kernels in
Eqs. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) and (<xref ref-type="disp-formula" rid="Ch1.E2"/>) are obtained as the sum <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>B</mml:mtext></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>BC</mml:mtext></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mtext>GC</mml:mtext></mml:msubsup></mml:mrow></mml:math></inline-formula>. All the
coagulation kernels are currently updated each time step. However, this is
computationally inefficient and the use of lookup tables with
bilinear
interpolation in particle size is planned.</p>
      <p>Condensation of water vapour and aerosol precursors gases (currently sulfuric
acid and organics) is based on the analytical predictor of condensation (APC)
scheme by <xref ref-type="bibr" rid="bib1.bibx22" id="text.27"/>. The scheme first calculates the new vapour
mole concentration as
            <disp-formula id="Ch1.E7" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>J</mml:mi></mml:munderover><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mtext>s</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>J</mml:mi></mml:munderover><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the mass transfer coefficient in size bin <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> based on
the current time step, <inline-formula><mml:math display="inline"><mml:mi>J</mml:mi></mml:math></inline-formula> is the total number of bins (including all particle
categories), <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the equilibrium supersaturation and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mtext>s</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the saturation mole concentration over a flat
surface. The new particle mole concentrations for each condensing vapour are
then given in a semi-implicit form.
            <disp-formula id="Ch1.E8" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mtext>s</mml:mtext><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula>
          While the APC scheme is mass preserving and numerically stable, condensation
and evaporation of water vapour on small droplets and especially small
aerosol particles requires a very short time step (<inline-formula><mml:math display="inline"><mml:mo>≪</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">s</mml:mi></mml:math></inline-formula>) to
avoid non-oscillatory solutions. Since this goes beyond the practical range
for the applications in this paper, where in general we aim towards a
time step around 1 s, two sets of measures are taken. First, for small aerosol
particles with ambient relative humidity (RH) below 98 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>, the wet
size of aerosol particles is determined as an equilibrium solution based on
the molalities of different particle species <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx29" id="paren.28"/>,
and the APC equations are solved only above 98 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula> RH. Second, a
simple substepping method is applied with Eqs. (<xref ref-type="disp-formula" rid="Ch1.E7"/>)
and (<xref ref-type="disp-formula" rid="Ch1.E8"/>), where the substep length for cloud droplets is user
defined and currently set as <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula> s. For
non-activated aerosol above the 98 % threshold for RH, even further
time splitting was found necessary and the timescale is <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>t</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:math></inline-formula>. The equilibrium saturation ratio is updated for each
substepping cycle due to changing droplet/particle size (temperature is kept
constant).</p>
      <p>Although not used in the context of this paper, new particle formation by
sulfuric acid is included in the model. There, the activation-type nucleation
is formulated according to <xref ref-type="bibr" rid="bib1.bibx42" id="text.29"/> and the formation rate of
3 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> particles is calculated according to <xref ref-type="bibr" rid="bib1.bibx33" id="text.30"/>.</p>
<sec id="Ch1.S2.SS1.SSS1">
  <title>Cloud droplets</title>
      <p>In the new extended SALSA, cloud droplets are treated with a sectional
description as well (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). Strictly speaking, to
reproduce the evolution of the aerosol size distribution through cloud
processing and wet scavenging accurately, which is the goal of this work, a
two-dimensional dry–wet diameter bin system would be required. This is
because cloud activation depends essentially on the dry aerosol size
distribution, while collision processes and deposition rates depend strongly
on the wet particle size. Although such two-dimensional frameworks have been
developed <xref ref-type="bibr" rid="bib1.bibx32" id="paren.31"><named-content content-type="pre">e.g.</named-content></xref>, the approach is computationally highly
demanding for large-eddy modelling applications spanning timescales of days
while covering relatively large domains with high spatial resolution, all of
which are pursued here. As a compromise between accuracy and computational
cost, a unique strategy is proposed, where cloud droplets are described based
on the dry size of the activated aerosol (i.e. cloud condensation nuclei,
CCN) with the same prognostic bin quantities as for the aerosol bins. The
particle diameters at the bin edges for the cloud droplet and non-activated
aerosol regimes are set identical within their common size range
(specifically, the 2a,b bins as a default setting) as shown in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>. Therefore, each cloud droplet bin is accompanied by
a parallel aerosol bin. This way, the shape of the aerosol size distribution
and the number concentration are preserved upon cloud droplet activation as
well as upon droplet evaporation though subject to the typical uncertainties
inherent to the sectional approach <xref ref-type="bibr" rid="bib1.bibx26" id="paren.32"/>. While the CCN dry
diameter is known accurately (to the extent allowed by the spectral
resolution of the size sections), the wet size of the cloud droplets,
determined by Eqs. (<xref ref-type="disp-formula" rid="Ch1.E1"/>)–(<xref ref-type="disp-formula" rid="Ch1.E8"/>), represents a mean over
each CCN size class.</p>
      <p>Two methods are available for simulating the formation of cloud droplets in
the extended SALSA. One is the parameterisation by <xref ref-type="bibr" rid="bib1.bibx1" id="text.33"/>,
which takes as an input the aerosol properties and updraft velocity (along
with atmospheric thermodynamic properties) to determine the maximum
supersaturation in a parcel of air and thus the critical particle diameter
for activation. Another is based on resolving the wet aerosol particle
diameter; once the wet diameter of a particle exceeds the critical diameter corresponding to the resolved
supersaturation from the host model, the particle is activated. Since the condensation of water vapour is
solved dynamically for high RH, it is preferable to use the latter approach instead of the parameterised one for consistency
in terms of the peak supersaturation and it is the approach used in the
experiments of this work. This allows for droplet activation also in other
parts of the cloud apart from the cloud base, e.g. due to radiative cooling
effects at the cloud top or supersaturation caused by mixing of air masses.
However, if the vertical resolution of the host model is coarse (several tens
of metres and above) it becomes necessary to use the parameterised method.
With coarse resolutions the supersaturation peak at the cloud base may be
underestimated due to averaging effects, which yields underestimated cloud
droplet number concentrations.</p>
      <p>The relatively coarse spectral resolution of the aerosol bins may induce
unwanted discontinuities in the activation spectrum with increasing
saturation ratio due to the particle size discretisation. To mitigate these
effects, the extended SALSA accounts for the distribution of particle number
and mass within the critical aerosol size bin using linearly fitted slopes
between the bin centres <xref ref-type="bibr" rid="bib1.bibx30" id="paren.34"/> with both of the available
methods for cloud activation.</p>
      <p>Evaporation and deactivation of cloud droplets is accounted for through the
resolved condensation, upon which activated aerosol particles are released
back to the aerosol bin regime as illustrated in Fig. <xref ref-type="fig" rid="Ch1.F1"/>.
For this to take place, a very simple diagnostic is used, where subsaturation
with respect to water vapour is required and the cloud droplet diameter
should be smaller than 50 % of the critical diameter dictated by the
properties of the CCN (or 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m at maximum). Together with the
representation of collision–coalescence processes by Eqs. (<xref ref-type="disp-formula" rid="Ch1.E1"/>)
and (<xref ref-type="disp-formula" rid="Ch1.E2"/>), this enables the model to account for aerosol aging
inside the clouds. However, please note that chemical processing of aerosol
is not presently included in the extended SALSA.</p>
</sec>
<sec id="Ch1.S2.SS1.SSS2">
  <title>Precipitation</title>
      <p>Due to our strategy of describing the cloud droplet distribution based on the
dry CCN size, the wet droplet diameter in each bin represents a mean over all
activated CCN of the corresponding size. Although the wet droplet size can be
expected to be somewhat correlated with the dry CCN size, neglecting the
variability in the dry–wet size relationship is an oversimplification when
predicting the mass and number of particles converted to drizzle droplets.
Therefore, a type of autoconversion parameterisation is formulated. Here, a
log-normal distribution (selected because of mathematical simplicity) is
assumed to describe the variation of the droplet wet size within each cloud
droplet bin. The mode diameter is given by the known bin mean wet cloud
droplet diameter and the geometric standard deviation is set as
<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>g</mml:mtext><mml:mtext>ac</mml:mtext></mml:msubsup><mml:mo>=</mml:mo><mml:mn>1.2</mml:mn></mml:mrow></mml:math></inline-formula>, which results in a relatively narrow
distribution and is similar to the values used for the cloud droplet size
distribution in the UCLA Large-Eddy Simulation Code (UCLALES) with bulk
microphysics. Setting a commonly used threshold diameter for drizzle
droplets, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>50</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, the number and mass concentrations of
newly formed drizzle from the cloud droplet bins are obtained as an integral
over the log-normal distribution from <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> upwards.</p>
      <p>The evolution of precipitation is described with an additional set of size
bins (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). However, since the growth of the drizzle
droplets through collection processes is critical to reach rain drop size and
produce realistic surface precipitation rates, the precipitation bins are
defined according to the wet drop diameter, different from the cloud and
aerosol size bins. While the predicted bin properties are again similar to
aerosol and cloud droplets, now the aerosol mass (instead of the mass of
water) represents a mean for each precipitation size class. This is in
contrast with our emphasis of tracking the aerosol size distribution
properties but is an acceptable compromise, since the number concentration
of rain drops is always much smaller than the concentration of cloud droplets
or aerosols. Thus, their influence on the shape and chemical composition of
the ambient aerosol size distribution upon drop evaporation is not
considerably obscured by the averaging effects acting on the properties of
the aerosol particles embedded inside the rain drops. The precipitation bins
cover the size range from 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m to 2 mm. This range is divided
into seven (currently fixed) sections with strongly non-uniform spectral
resolution; up to the diameter of <inline-formula><mml:math display="inline"><mml:mn>100</mml:mn></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m (first 3 bins) the bin
resolution gradually decreased from <inline-formula><mml:math display="inline"><mml:mn mathvariant="normal">5</mml:mn></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mn>35</mml:mn></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m and above the
<inline-formula><mml:math display="inline"><mml:mn>100</mml:mn></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m range the resolution decreases from <inline-formula><mml:math display="inline"><mml:mn>100</mml:mn></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m to
1 mm.</p>
      <p>Collection and scavenging of cloud droplets and aerosol particles by
precipitation are treated by the coagulation (Eqs. <xref ref-type="disp-formula" rid="Ch1.E1"/>
and <xref ref-type="disp-formula" rid="Ch1.E2"/>) as well. Aerosol particles collected by precipitation
accumulates the aerosol mass inside the size bins. Upon evaporation of a
drizzle or rain drop, it is assumed that a single particle is released
<xref ref-type="bibr" rid="bib1.bibx35" id="paren.35"/> and it is placed in an aerosol bin with the mean diameter
closest to the released dry particle size. The size of the released particle
is obtained simply based on the mass and the bulk density of the aerosol.
This adds the contribution of drizzle formation on the aerosol processing in
the model, albeit, again omitting the chemical processing.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Coupled UCLALES–SALSA</title>
      <p>UCLALES <xref ref-type="bibr" rid="bib1.bibx50" id="paren.36"/> is a large-eddy model based on the
Smagorinsky–Lilly subgrid model. In the doubly periodic domain, advection of
momentum variables is based on a fourth-order difference equation with
time-stepping by the leap-frog method. For scalars, simple forward
time stepping is used. Prognostic variables in the UCLALES are the three wind
components <inline-formula><mml:math display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (with the standard meteorological notation),
liquid water potential temperature <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>l</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and total water mixing
ratio <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, plus some additional prognostic scalars depending on the
selected thermodynamic level (e.g. rain water). UCLALES contains three
thermodynamic levels, which comprise dry, moist and precipitating
thermodynamical models, the latter two of which are based on the saturation
adjustment method. UCLALES does not include a description for aerosol.
Rather, the microphysical processes are driven by a prescribed cloud
condensation nuclei (CCN) concentration, taken to represent the cloud droplet
number. The drizzle formation is given by <xref ref-type="bibr" rid="bib1.bibx46" id="text.37"/> as
            <disp-formula id="Ch1.E9" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mtext>r</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:msubsup><mml:mi>q</mml:mi><mml:mtext>c</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:msubsup><mml:mi>x</mml:mi><mml:mtext>c</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>r</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the precipitation mixing ratio, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the
cloud condensate mixing ratio <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the CCN concentration and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is a coefficient
taking into account the droplet size distribution width and non-equilibrium
effects <xref ref-type="bibr" rid="bib1.bibx51" id="paren.38"/>. Sedimentation of the drizzle and rain drops is
determined by sedimentation velocity, which depends on the diagnosed droplet
size according to Eq. (<xref ref-type="disp-formula" rid="Ch1.E6"/>).</p>
      <p>Coupling the extended SALSA module into UCLALES yields extensive changes in
the thermodynamic core of the model as compared to the version based on bulk
microphysics, thus adding a new thermodynamic level (Level 4). With the
coupled UCLALES–SALSA, condensation and evaporation of water vapour on cloud
droplets, rain drops and aerosols is explicitly computed (Eq. <xref ref-type="disp-formula" rid="Ch1.E8"/>).
Therefore, instead of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in case of the saturation adjustment
method, level 4 treats <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>r</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and the water-vapour mixing
ratio (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>v</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) as separate prognostic variables. This allows
non-equilibrium conditions with respect to water vapour in UCLALES–SALSA, in
contrast to the standard UCLALES. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>l</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is retained as a
prognostic variable, which allows for simple treatment of the latent heat
transfer during moist adiabatic transitions.</p>
      <p>UCLALES has an option to calculate cloud interaction with radiation using a
four-stream radiative transfer solver <xref ref-type="bibr" rid="bib1.bibx14" id="paren.39"/>. The radiation
calculation accounts for the diurnal cycle and takes as an input the total
number concentration of cloud droplets and the cloud water content. With
UCLALES–SALSA, the total number of droplets and condensate mass are obtained
as the sum over the cloud droplet size bins and used to calculate radiative
transfer the same way as in UCLALES (the aerosol fields are not coupled with
radiation in the current model version).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Technical implementation</title>
      <p>UCLALES–SALSA is currently implemented under the Fortran95 standard. Output
files are written in NetCDF format. For parallel computing the Message Passing Interface (MPI) library is used and the parallelisation strategy is
based on two-dimensional horizontal blocking of the model domain.</p>
      <p>Since the particle number concentrations as well as the masses of different
compounds (aerosol species, liquid water) in each particle size bin
constitute a prognostic variable, the number of advected scalars is increased
from a maximum of 3 in UCLALES to <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="script">O</mml:mi><mml:mo>(</mml:mo><mml:mn>100</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in UCLALES–SALSA even
with a simple sulfate-based set-up. This obviously has a strong impact on the
computational cost. The model runs at about real-time with a Cray XC30
supercomputer using a decomposition with <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">8</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> grid points per MPI
process. While this is a substantial constraint on the applicability of the
model, short 12–24 h (model time) simulations are still easily performed
and in the following sections we will show that the presented methods are
necessary to improve our understanding about boundary layer clouds, fog and
aerosols.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>DYCOMS-II</title>
<sec id="Ch1.S3.SS1">
  <title>Case description and model configuration</title>
      <p>The new UCLALES–SALSA is first configured and tested based on the case
DYCOMS-II flight RF02 <xref ref-type="bibr" rid="bib1.bibx49" id="paren.40"/>, which took place off the coast of
California in July 2001. The observations conducted in this case featured a
mix of open- and closed-cell stratocumulus structures, with strong drizzle
associated with the former. For the model set-up we follow the settings
defined by <xref ref-type="bibr" rid="bib1.bibx2" id="text.41"/>; in all simulations, the initial profiles of
liquid water potential temperature <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>l</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, total water mixing
ratio <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mtext>t</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (taken as supersaturated vapour in the model
initialisation process), and <inline-formula><mml:math display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> wind components were specified with
the following equations.

                <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E10"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable class="cases" columnspacing="1em" rowspacing="0.2ex" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:mn>288.3</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>z</mml:mi><mml:mo>&lt;</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mn>295</mml:mn><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>z</mml:mi><mml:mo>≥</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E11"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable rowspacing="0.2ex" class="cases" columnspacing="1em" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:mn>9.45</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">kg</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>z</mml:mi><mml:mo>&lt;</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mfenced close=")" open="("><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mn>500</mml:mn></mml:mfenced></mml:mfenced><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">kg</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>z</mml:mi><mml:mo>≥</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <p><?xmltex \hack{\newpage}?>

                <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E12"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mi>u</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>+</mml:mo><mml:mn>4.3</mml:mn><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mn>1000</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E13"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mi>v</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn><mml:mo>+</mml:mo><mml:mn>5.6</mml:mn><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mn>1000</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            In the above, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mtext>i</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the initial inversion level set at 795 m. In
addition, a large-scale divergence of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>3.75</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is
assumed, together with prescribed latent and sensible heat fluxes of <inline-formula><mml:math display="inline"><mml:mn>93</mml:mn></mml:math></inline-formula> and
16 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">W</mml:mi><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, respectively.</p>
      <p>The simulations span 10 h. The first hour is considered as the spin-up
period, during which drizzle formation and all the collision processes are
turned off, while cloud activation and condensation processes are active.
This prevents spurious effects on the cloud properties during the initial
buildup of turbulent kinetic energy and
settling of the boundary layer properties. The simulation domain spanned
5 km into each horizontal direction and 1600 m in the vertical, with the
topmost 200 m used as a sponge layer, damping unrealistically reflected
gravity waves at the model top. The horizontal resolution is set to 50 m
while the vertical resolution is 20 m. The model uses an adaptive time step,
whose maximum value is set to 1 s. During events of strong mixing in the
course of the model run, the time step was occasionally reduced to about
0.5 s. A more detailed description of the model experiments is given below
and their key aspects are summarised in Table <xref ref-type="table" rid="Ch1.T1"/>. The
performance of the UCLALES–SALSA model is evaluated by comparing the results
with those obtained from similar runs with UCLALES, using bulk microphysics
as well as field measurements. This can also be contrasted to the model
ensemble used in the LES intercomparison in which UCLALES was a part of
<xref ref-type="bibr" rid="bib1.bibx2" id="paren.42"/>. Thus, we can isolate and characterise the effects
induced by the use of an elaborate sectional microphysical scheme for
aerosols and clouds.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>The DYCOMS-II model experiments with their key configuration
details.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Experiment</oasis:entry>  
         <oasis:entry colname="col2">SALSA</oasis:entry>  
         <oasis:entry colname="col3">Particle</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">number (cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">LEV3</oasis:entry>  
         <oasis:entry colname="col2">off</oasis:entry>  
         <oasis:entry colname="col3">55</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">LEV4</oasis:entry>  
         <oasis:entry colname="col2">on</oasis:entry>  
         <oasis:entry colname="col3">190</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">LEV3HI</oasis:entry>  
         <oasis:entry colname="col2">off</oasis:entry>  
         <oasis:entry colname="col3">165</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">LEV4HI</oasis:entry>  
         <oasis:entry colname="col2">on</oasis:entry>  
         <oasis:entry colname="col3">570</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> This is the prescribed CCN concentration when SALSA is not
used, otherwise the total initial aerosol number concentration.</p></table-wrap-foot></table-wrap>

<sec id="Ch1.S3.SS1.SSS1">
  <title>Reference case experiments</title>
      <p>The reference experiments are based on the basic settings in terms of aerosol
and cloud microphysics. For the experiment performed with UCLALES–SALSA,
designated as LEV4, this means that we use the two-mode log-normal initial
aerosol size distribution given in <xref ref-type="bibr" rid="bib1.bibx2" id="text.43"/>, which is assumed to
consist of sulfate aerosol. The total number, geometrical mean diameter and
geometrical standard deviation are 125 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 22 nm and <inline-formula><mml:math display="inline"><mml:mn>1.2</mml:mn></mml:math></inline-formula> for the
first mode and 65 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 120 nm and <inline-formula><mml:math display="inline"><mml:mn>1.7</mml:mn></mml:math></inline-formula> for the second mode, respectively. In the
model startup, the size distribution is remapped into the SALSA aerosol size
bins. For comparison with the experiment LEV4, a parallel experiment,
designated LEV3, is performed with the UCLALES configuration using bulk cloud
microphysics. However, since UCLALES does not contain a description for
aerosols, the CCN number concentrations must be prescribed, similar to most
other available LES models. In LEV3, the CCN (i.e. cloud droplet)
concentration is set to 55 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which roughly corresponds to the
number of cloud droplets initially produced by LEV4 and is also the number
used in other LES simulations based on this particular case
<xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx45" id="paren.44"/>.</p>
</sec>
<sec id="Ch1.S3.SS1.SSS2">
  <title>Sensitivity tests</title>
      <p>A set of sensitivity tests are performed to further investigate certain
aspects of the model. Experiments designated as LEV4HI and LEV3HI are
performed. These are similar to LEV4 and LEV3, but with higher aerosol (or
CCN for LEV3HI) concentration (mode number concentrations multiplied by 3),
and are utilised to study how the coupling between the model microphysics and
dynamics reacts to perturbations in the initial aerosol and cloud properties.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Time–height cross section of the cloud water content for LEV3 and
LEV4 simulations in g kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f02.pdf"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p><bold>(a)</bold> Liquid water path, interpreted as the total mass of
water, including both cloud droplets and drizzle. <bold>(b)</bold> Rain water
path, taken as the water mass diagnosed from precipitation bins only. Results
from LEV3 are shown with a dashed line while those from LEV4 are shown with a
solid line. The horizontal blue dashed line in panel <bold>(a)</bold> represents
the observed flight mean liquid water path at 120 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> as
reported by <xref ref-type="bibr" rid="bib1.bibx49" id="text.45"/>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f03.pdf"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Results</title>
<sec id="Ch1.S3.SS2.SSS1">
  <title>General features</title>
      <p>Figure <xref ref-type="fig" rid="Ch1.F2"/> shows a domain mean time–height plot of the
liquid water content (LWC) in the LEV3 and LEV4 experiments. While in the
early stages of the simulation the LWC and the macroscopic cloud structure
are quite similar between LEV3 and LEV4, after about 4 h the results start
to diverge substantially marking a clear shift in the boundary layer
dynamics. Whereas the LEV3 simulations maintain a solid stratocumulus deck
until the end of the simulated period, LEV4 results in a very thin stratiform
cloud deck just below the inversion with low LWC and only 5–10 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
cloud droplets. However, in the last couple of hours of the simulation, this
setting is interspersed by occasional cumulus elements with base height
around 400 m. The thin filaments below the stratiform cloud shown in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>b are the result of these elements, although they
appear weak due to the horizontal averaging (the cumulus clouds were also
confirmed from three-dimensional fields, although not shown here). This is
reminiscent of the formation of open-cell circulation structures in marine
stratocumulus clouds <xref ref-type="bibr" rid="bib1.bibx62" id="paren.46"/>, which were also observed during RF02
<xref ref-type="bibr" rid="bib1.bibx49" id="paren.47"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p><bold>(a)</bold> Surface precipitation rate in mm day<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
<bold>(b)</bold> removal rate of sulfate embedded in precipitating drops in
mg day<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Results from LEV3 are shown with a dashed line while those
from LEV4 are shown with a solid line. The blue horizontal lines in
panel <bold>(a)</bold> indicate range of observed values as shown in
<xref ref-type="bibr" rid="bib1.bibx2" id="text.48"/>.</p></caption>
            <?xmltex \igopts{width=335.74252pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f04.pdf"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Domain mean vertical profiles of <bold>(a)</bold> potential temperature,
<bold>(b)</bold> water-vapour mixing ratio and <bold>(c)</bold> liquid water mixing
ratio. Data are plotted in 3 h intervals from the initial state of the model
to 9 h into the simulation (from black to orange). Results from LEV3 are
shown with a dashed line while those from LEV4 are shown with a solid line.</p></caption>
            <?xmltex \igopts{width=335.74252pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f05.pdf"/>

          </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the total liquid water path (LWP; taken as cloud
droplets plus precipitation) and the rain water path for LEV3 and LEV4.
Again, the LWP is fairly similar between the two experiments during the first
4 h and it also agrees quite well with the observed mean LWP, as shown in
the figure. After about 4 h, LEV4 starts to deviate from LEV3. However, in a
later stage, a substantial portion of the total LWP is interpreted as
precipitation in LEV4, while in LEV3 the mass of precipitation is much
smaller. This is mainly due to a diagnostic discrepancy; in LEV4 most of the
excess precipitating droplets reside within the cloud layer and partition
into the smallest bin, where fall speeds are low and droplets quickly
evaporate after descending below the cloud layer. This stems from the details
in parameterising drizzle formation. Differences arise for example from the
fact that when large cloud droplets (<inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) are considered as
drizzle in UCLALES–SALSA, they are transferred to the smallest precipitation
bin, beyond which their growth is explicitly modelled (though subject to low
bin resolution). In contrast, in LEV3 a size distribution (based on gamma
function) is assumed for precipitation, which causes at least a part of the
precipitating droplets to reach surface-reaching rain drop sizes much faster
than in LEV4. Figure <xref ref-type="fig" rid="Ch1.F4"/>a shows that despite the difference in
the rain water path, the surface precipitation rate is of a similar order of
magnitude between LEV3 and LEV4. The results are also for a large part within
the observed range as shown in <xref ref-type="bibr" rid="bib1.bibx2" id="text.49"/>. This is used as the main
criterion for setting up the model parameters such as
<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>g</mml:mtext><mml:mtext>ac</mml:mtext></mml:msubsup></mml:mrow></mml:math></inline-formula>. Nevertheless, even after considering the
differences in drizzle, it is evident that the boundary layer and cloud
properties in LEV4 shift towards a very different state as compared to LEV3.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>LEV4 domain mean profiles for <bold>(a)</bold> aerosol,
<bold>(b)</bold> cloud droplet and <bold>(c)</bold> drizzle number concentrations,
plotted in 3 h intervals from the initial state of the model to 9 h into
the simulation (from black to orange).</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f06.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <title>Boundary layer structure</title>
      <p>In the LEV4 experiment, the boundary layer shows somewhat more stratified
characteristics than that in LEV3. Figure <xref ref-type="fig" rid="Ch1.F5"/> plots the domain
mean vertical profiles of potential temperature, water vapour and liquid
water mixing ratios. Especially towards the end of the simulation, LEV4 shows
a rather distinct division of the boundary layer into two separate mixing
regimes. This decoupling of the cloud-driven layer (see for reference the
conceptual models, e.g., in <?xmltex \hack{\mbox\bgroup}?><xref ref-type="bibr" rid="bib1.bibx21" id="altparen.50"/><?xmltex \hack{\egroup}?>) is evident in both
the potential temperature as well as water-vapour mixing ratio, with the
sharpest gradient taking place around 400 m height, following the criteria
defined in <xref ref-type="bibr" rid="bib1.bibx24" id="text.51"/>. In LEV3 the temperature profile is weakly
stable as well after 9 h of simulation, but less
so than in LEV4. In particular, the water-vapour mixing ratio in LEV3 does
not show the same separation as LEV4.</p>
      <p>It is typical for a stratocumulus topped boundary layer to shift towards a
decoupled structure in the morning as shortwave heating by the rising sun
begins to offset the long-wave cloud top radiative cooling and therefore
reduces cloud-driven mixing <xref ref-type="bibr" rid="bib1.bibx17" id="paren.52"/>. Although wind shear may also
affect the entrainment and cloud top static stability <xref ref-type="bibr" rid="bib1.bibx59" id="paren.53"/>, it is
not surprising that the sharpest transition in LEV4 occurs around 5 h into
the simulation, which is also close to sunrise at the assumed location. It is
also noted that after the initial shift, the decoupled structure is subject
to positive feedbacks as it reduces the supply of moisture from the surface
to the cloud layer, which further reduces the cloud top radiative cooling and
thus the cloud-driven mixing. This also weakens the cloud top inversion,
allowing for transport of heat to the upper mixed layer by entrainment. Due to
the stable layer at the decoupling interface, heat transferred to the
cloud-driven layer is not efficiently mixed, resulting in even more
pronounced decoupling of the cloud layer. By the same argument, a larger
portion of moisture released from the surface by the latent heat flux is
confined to the surface layer, thus contributing to the relatively high water-vapour mixing ratio in LEV4 as compared to LEV3.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <title>Role of microphysics and drizzle</title>
      <p>Even though LEV3 and LEV4 simulations are subject to identical external
forcings, LEV3 does not show as abrupt changes in the simulated cloud layer
nor the boundary layer structure as LEV4 does, indicating that something
makes the LEV4 boundary layer more susceptible to undergo the decoupling
process. As discussed next, the reason for the initial perturbation towards
this different state can be traced back to the representation of microphysics
and precipitation.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F4"/> shows the surface precipitation rate in LEV3 and LEV4
simulations as well as the rate of removal of sulfate aerosol embedded
inside precipitating droplets in UCLALES–SALSA, illustrating the model's
ability to resolve the aerosol wet scavenging process. The UCLALES–SALSA
performs this task with very high detail; the size distribution of aerosols
is preserved through activation scavenging after which droplet growth and
subsequent drizzle generation favours large soluble particles. The aerosol
scavenging by cloud activation is clearly visible as a reduction in aerosol
number concentration in LEV4 already during the model spin-up as shown in
Fig. <xref ref-type="fig" rid="Ch1.F6"/>. After a couple of hours of precipitation formation in
LEV4, the consequences of aerosol scavenging by drizzle and rain fallout
become visible in the below-cloud layer as well. Scavenging by precipitation
is treated as a coagulation process between the rain drops and aerosols both
in the in-cloud and below-cloud layers. Upon collision, the mass of the
aerosol particle is moved to the rain drop bin in question, and removed from
the aerosol bin along with the corresponding number concentration. The
reduction in the number of potential CCN indirectly supports continuing
production of drizzle through reduced competition for water vapour between
cloud droplets. Eventually, drizzle covers a considerable fraction of the
total droplet concentration within the stratiform cloud layer. The scavenging
of particles and the reduction in cloud water content due to drizzle start to
weaken cloud top radiative cooling already during the first few hours of the
simulation in LEV4. In contrast, in LEV3 such a transition towards a thinner
cloud layer with lower cloud water content does not take place, because of
the lack of representation for aerosol scavenging. This marks a distinct
change in the interpretation of the model, since the use of prescribed CCN
concentration in LEV3 implies an infinite supply of particles advected to the
domain. For LEV4 this is not true and in the absence of emissions (aerosol
emissions are not implemented in this model version) the aerosol is gradually
depleted by scavenging, which is more reminiscent of the model domain moving
with the flow (Lagrangian modelling approach).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Size distributions of <bold>(a)</bold> dry/interstitial aerosol after
spin-up (1 h, black) and after 8 h (red) averaged over the domain at 200 m
(solid) and 800 m (dashed) heights, and <bold>(b)</bold> activated (solid) and
total (activated <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> interstitial) aerosol size distributions after the
spin-up (black) and after 8 h (red) sampled at 800 height. Please note that
the concentration of activated particles at 8 h is multiplied by 100 to be
visible in the figure. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mtext>p</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the particle diameter.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f07.pdf"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p>Normalised change in particle number concentration in each size bin.
The concentrations are presented as a domain average from the (i) below-cloud
layer (solid lines) and (ii) in-cloud (dashed lines). In the latter case, the
sum of the number of interstitial particles and activated CCN is presented
for each bin. The two largest size bins are not shown because of very small
absolute concentrations in this case. The legend gives the lower limit
diameter of the presented size bins. Data are show from the end of the spin-up
period. Number concentrations from this time are used as the normalising
factor for each bin.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f08.pdf"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>Similar to Fig. 5, but for the experiments LEV3HI and LEV4HI with
high aerosol number concentrations.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f09.pdf"/>

          </fig>

      <p>Because of the low-aerosol concentration and sufficient amount of water
available in the model initial state, the presented case favours considerable
drizzle production. Considering the detailed description of particles and the
aerosol removal mechanisms included in the model, the results shown here are
not scientifically surprising, but are used to demonstrate the model's
ability to reproduce the transitions in boundary layer and cloud structure
due to microphysical interactions. Interestingly, the reduced cloud water and
the drizzle maintained by the depletion of aerosol, as shown by
Fig. <xref ref-type="fig" rid="Ch1.F3"/> for LEV4, resemble the corresponding effects shown by
<xref ref-type="bibr" rid="bib1.bibx64" id="text.54"/> for low-aerosol simulations performed with a cloud-resolving model.
However, UCLALES–SALSA provides the means for more detailed
investigations of the impact of the particle size distribution and
composition on cloud dynamics and aerosol–cloud interactions, which justifies
the added complexity and computational demand. This is demonstrated by
Fig. <xref ref-type="fig" rid="Ch1.F7"/>, showing the size distributions of activated and
non-activated particles for two heights right after the 1 h spin-up and after
8 h into the simulation. It clearly shows the impact of activation on the
large diameter end of the distribution in the beginning of the simulation, as
well as the fact that the total distribution (activated plus non-activated
particles) in the cloud layer corresponds well to the dry aerosol
distribution at lower levels. After 8 h of simulation, the depletion of
activation-sized particles is evident as well, together with a small increase
in coarse-mode particles at low levels due to particles released from
evaporating drizzle and rain drops. An additional example is given by
Fig. <xref ref-type="fig" rid="Ch1.F8"/>, showing the relative change in particle number
concentrations for individual bins averaged over the in-cloud and below-cloud
layers. The effects of cloud activation and scavenging by drizzle and rain
are clearly seen here as well. In particular, the increase of large particles
in the below-cloud layer due to rain evaporation is more clearly seen here than in Fig. <xref ref-type="fig" rid="Ch1.F7"/>.</p>
      <p>Since UCLALES–SALSA includes a variety of processes that directly influence
the size distribution and composition of aerosol particles, this also affects
the distribution and variation of the mass of soluble material inside cloud
droplets. This, at least in the initial phase of droplet formation,
contributes to their growth rate, which may affect precipitation formation. In
this context, the detailed description of the evolution of the aerosol size
distribution provided by the model also enables the investigation of aerosol
particle emissions, e.g. giant sea salt particles, and their influence on
cloud properties and precipitation.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS4">
  <title>Impact of initial particle concentration</title>
      <p>Since it is apparent that drizzle formation and the subsequent impacts of
particle scavenging yield the divergence of results between the LEV3 and LEV4
simulations, it is necessary to test how changing the particle number
concentrations affects the results. This is done simply by repeating the LEV3
and LEV4 experiments with particle concentrations multiplied by 3,
designated as LEV3HI and LEV4HI. With higher particle concentrations, the
precipitation reaching the surface is very small in both simulations, which
suppresses the wet scavenging effect in LEV4HI. As a result, the cloud
properties in LEV4HI remain quite close to those in LEV3HI during the
simulated period. This is seen in the domain mean profiles of LWC and the
boundary layer thermodynamical properties, shown in Fig. <xref ref-type="fig" rid="Ch1.F9"/>,
which are indeed remarkably similar between the two experiments. This shows
that in conditions where the additional processes and interactions in the new
UCLALES–SALSA are not dominating the boundary layer and cloud evolution, the
results remain physically consistent with the more simple model versions. It
should be noted, however, that if the LEV4HI simulation would be continued over
an extended period of time, the supply of moisture by the (constant) latent
heat flux and the effects of cloud processing on the aerosol size
distribution would eventually create drizzle and rain, which would then lead
to a similar situation as seen in the experiment LEV4. It has been shown that
maintaining a steady-state cloud structure requires aerosol replenishment
from multiple sources, including aerosol emissions <xref ref-type="bibr" rid="bib1.bibx63" id="paren.55"/>. Although
there is some aerosol replenishment through mixing from the free troposphere
in our model experiments, this is not enough to maintain the cloud deck over
prolonged periods of time. Considering the outcomes of the experiments LEV4
and LEV4HI, the model results here are consistent with the findings of
<xref ref-type="bibr" rid="bib1.bibx23" id="text.56"/> regarding the effects of aerosol replenishment. Thus,
implementation of aerosol emissions into UCLALES–SALSA is part of our future
plans.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Simulating fog formation and evolution</title>
<sec id="Ch1.S4.SS1">
  <title>Case description and model configuration</title>
      <p>To demonstrate the versatility of UCLALES–SALSA, the model is configured
according to the conditions from a radiation fog event that took place at the
UK Met Office research site at Cardington in the night of 12–13 February,
2008 <xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx41" id="paren.57"/>. Simulations using different aerosol
concentrations and horizontal wind profiles are described to illustrate the
potential effect of aerosol and wind shear on the properties of radiation
fog.</p>
      <p>In addition to adapting the model initial conditions (temperature, humidity
and wind profiles, aerosol size distributions) for this particular case, the
main differences in the model configuration here, as compared to the
DYCOMS-II case in Sect. 3, have to do with spatial and temporal resolution
and the surface forcing. Here, the model is run with a very high resolution,
vertically spanning 1.5 m in the lowest 150 m. Above, the resolution is
gradually decreased so that the model top is at approximately 800 m with the
total number of levels being 165. The horizontal resolution is 4 m in each
direction and the domain covers an area spanning 320 by 640 m. The time step
is set to 1 s as in the stratocumulus case. However, the adaptive time step
reduces to around 0.2 s during the simulation. This is somewhat less
than the minimum adaptive time step length in the stratocumulus case, which is
expected due the higher horizontal resolution used here.</p>
      <p>In contrast to the experiments in Sect. 3, the surface heat fluxes are not
prescribed, but are determined with a simple parameterisation for soil energy
balance, which is coupled with the radiation scheme <xref ref-type="bibr" rid="bib1.bibx3" id="paren.58"/>.
Moreover, the scheme accounts for the heat transfer between surface and
deeper soil. For the latent heat flux the surface is assumed to be saturated
with respect to water. This can be assumed to be a fairly good approximation
until the fog dissipation phase, when the evaporation from the warming
surface can deplete the water from the surface layer and the assumption of a
saturated surface may overestimate the latent heat flux. Due to the
simplicity of the surface energy balance model, to produce reasonable surface
cooling rates with respect to observations <xref ref-type="bibr" rid="bib1.bibx41" id="paren.59"/>, the equation
for surface heat capacity was tuned to yield values on the order of
1000 J kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> K<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which also depends on the soil water fraction.</p>
      <p>The settings for microphysics in the UCLALES–SALSA run are kept similar to
those used in the DYCOMS-II case (Sect. 3), with the exception that drizzle
formation is switched off in the fog simulations. This is justified due to
the fact that the liquid water content in the fog remains relatively low and
the sedimentation of cloud droplets is the main sink of cloud water. This
setting also conforms with the model set-up by <xref ref-type="bibr" rid="bib1.bibx40" id="text.60"/>. In
addition, while droplet number concentrations were prescribed in the
simulations performed by <xref ref-type="bibr" rid="bib1.bibx40" id="text.61"/>, in UCLALES–SALSA the droplet
activation is computed based on the growth of the aerosol particles to sizes
larger than their critical diameter at the water vapour supersaturation,
which is resolved by the model. While this method for cloud activation was
also used in the experiments in Sect. 3, it is particularly important here,
since in radiation fog the droplet formation is mainly driven by the
radiative cooling at the top of the fog layer. Solving the condensation
equation (Eq. <xref ref-type="disp-formula" rid="Ch1.E8"/>) also allows for the evaporation of cloud droplets
inside the fog if the water supersaturation falls below the equilibrium
saturation ratio in the smallest cloud droplet bins. This process can reduce
the number of droplets and has been found to take place also in clouds
<xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx43" id="paren.62"/>. Note that no spin-up period in terms of
the configuration of the microphysical processes is used since here it
generally takes a few hours from the start of the model run for the fog to
emerge.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p>Radiation fog model experiments with their key configuration
details. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>acc</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the number concentration of accumulation-mode
particles.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Experiment</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>acc</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3">Wind profile</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">A200</oasis:entry>  
         <oasis:entry colname="col2">200</oasis:entry>  
         <oasis:entry colname="col3">zero</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">A400</oasis:entry>  
         <oasis:entry colname="col2">400</oasis:entry>  
         <oasis:entry colname="col3">zero</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">A800</oasis:entry>  
         <oasis:entry colname="col2">800</oasis:entry>  
         <oasis:entry colname="col3">zero</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">A400W</oasis:entry>  
         <oasis:entry colname="col2">400</oasis:entry>  
         <oasis:entry colname="col3">
                    <xref ref-type="bibr" rid="bib1.bibx40" id="text.63"/>
                  </oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p><bold>(a)</bold> Fog droplet number concentrations sampled at
approximately 10 m height and <bold>(b)</bold> the height of the fog-top layer
interpreted as the <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> kg kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> isoline for liquid water
content. Observed values of the fog-layer depth based on tethered balloon
data given by <xref ref-type="bibr" rid="bib1.bibx40" id="text.64"/> are shown with blue star symbols in
panel <bold>(b)</bold>.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f10.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p>Domain mean profiles of potential temperature in 4 h intervals
starting from the formation of the fog layer (from black to orange) for the
experiments <bold>(a)</bold> A200, <bold>(b)</bold> A400 and <bold>(c)</bold> A800.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f11.pdf"/>

        </fig>

<sec id="Ch1.S4.SS1.SSS1">
  <title>Experiments</title>
      <p>The impact of aerosols on fog formation is first investigated by three
parallel experiments with zero initial horizontal wind velocities, which
differ in their initial particle concentration. As the information about
aerosol concentration is not available for this study, we use a bimodal
aerosol size distribution with mean sizes of 50 and 150 nm. In all
simulations the number concentration in the Aitken mode is kept at
1000 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, whereas the number of accumulation-mode particles is increased
consecutively so that the accumulation-mode particle concentrations are
<inline-formula><mml:math display="inline"><mml:mn>200</mml:mn></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mn>400</mml:mn></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>800</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in experiments A200, A400 and A800,
respectively. An additional experiment, A400W, is then presented, where the
model is initialised with the horizontal wind data from <xref ref-type="bibr" rid="bib1.bibx40" id="paren.65"/>.
The list of experiments is summarised in Table 2.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><caption><p><bold>(a)</bold>–<bold>(c)</bold> Radiative heating in K h<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the
experiments A200, A400 and A800, respectively.
<bold>(d)</bold>–<bold>(f)</bold> Water vapour supersaturation in per cent for the
same experiments. The upper and lower black curves give the 0.01 and
0.1 g kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> isolines for the liquid water mixing ratio, respectively.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f12.pdf"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Results</title>
      <p>Similar to the observation-based reports by <xref ref-type="bibr" rid="bib1.bibx41" id="text.66"/> and LES studies
<xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx40" id="paren.67"/>, the fog layer investigated here undergoes
distinct thermodynamical transitions during its evolution. Initially, the fog
forms near the surface in a very stable layer due to the long-wave cooling
effect. As the fog layer encroaches upwards and more droplets are activated
at the fog-top layers, its optical thickness increases, which reduces the
radiative cooling effect at the surface. At the same time the peak of
radiative cooling at the fog-top region becomes more pronounced.
Figure <xref ref-type="fig" rid="Ch1.F10"/> shows the evolution of the fog droplet concentration
(sampled at 10 m height) and the growth of the fog-layer thickness. For the
experiments A200, A400 and A800 (initialised with zero horizontal wind) the
increase in the number of droplets due to the increasing aerosol
concentration is clearly seen. A higher initial aerosol concentration yields
an increased fog-layer depth, but the differences between the experiments are
minor. This is due to the stability of the temperature profile, which
suppresses the mixing especially with low aerosol
concentrations, as show in
Fig. <xref ref-type="fig" rid="Ch1.F11"/>.</p>
      <p>In the early morning there is a transition from stable to almost neutral
temperature stratification inside the fog (Fig. <xref ref-type="fig" rid="Ch1.F11"/>). Higher
aerosol concentrations promote increased optical thickness of the fog layer,
which leads to faster formation of the neutral temperature profile. This is
qualitatively similar to the results presented in <xref ref-type="bibr" rid="bib1.bibx41" id="text.68"/> and is
attributed to the reduction in the surface long-wave cooling effect with
optically thick fog layers and to the supply of heat from the soil. As can be
seen from Fig. <xref ref-type="fig" rid="Ch1.F10"/>, the earlier formation of a neutral
temperature profile with higher aerosol load further enhances the aerosol
effect on fog droplet concentration (04:00 UTC in A800) through a positive
feedback similar to what has been found to take place at the top of fog,
where the increase in droplet concentration enhances radiative cooling, which
again feeds back as a higher supersaturation and enhanced particle activation
<xref ref-type="bibr" rid="bib1.bibx34" id="paren.69"/>.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F12"/> shows the profiles of radiative cooling rate and the
water vapour supersaturation as a function of time for the three experiments.
As expected, the peak radiative cooling is indeed found near the top of the
fog layer. Moreover, the intensity of the cooling increases with increasing
aerosol concentration, owing to the higher optical depth; in A800 the peak
cooling rate is approximately 7 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">K</mml:mi><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and in A200
4 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">K</mml:mi><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. This is in agreement with the range of values reported in
<xref ref-type="bibr" rid="bib1.bibx37" id="text.70"/>. The peak water vapour supersaturation is found at the
same altitudes as the strongest radiative cooling. However, as larger
particle concentrations deplete the available water vapour more efficiently,
the highest supersaturations occur in the experiment with the lowest particle
concentration (A200).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><caption><p><bold>(a)</bold> Domain mean profiles of <inline-formula><mml:math display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> wind components and
<bold>(b)</bold> the potential temperature for the experiment A400W in 4 h
intervals from the formation of the fog layer (from black to orange).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gmd.copernicus.org/articles/10/169/2017/gmd-10-169-2017-f13.pdf"/>

        </fig>

      <p>These findings illustrate the ability of UCLALES–SALSA to provide a realistic
description of not only the thermodynamic and microphysical properties of
fog but also the aerosol–fog–radiation interactions and feedbacks on the
dynamics. The results from the experiments A200, A400 and A800 compare quite
well with those reported in <xref ref-type="bibr" rid="bib1.bibx40" id="text.71"/>. This includes the rate of
growth of the fog-layer depth, despite the fact that their simulations were
initialised with non-zero horizontal wind profiles. However, the growth rate
is considerably lower than in the observations, where the fog top reaches
about 100 m within 7 or 8 h from the first appearance of the fog <xref ref-type="bibr" rid="bib1.bibx40" id="paren.72"><named-content content-type="pre">see
Fig. 5 in</named-content></xref>. For UCLALES–SALSA, this is presumably because of
the lack of shear generated turbulence. Wind shear has been shown to be very
important in controlling the turbulence characteristics inside radiation fog
<xref ref-type="bibr" rid="bib1.bibx6" id="paren.73"/>. Thus, in the additional experiment A400W, UCLALES–SALSA
is initialised with an approximately similar wind profile as in
<xref ref-type="bibr" rid="bib1.bibx40" id="text.74"/>. Interestingly, in this case the growth of the fog layer
corresponds much more closely to the observed, as shown by the dashed line in
Fig. <xref ref-type="fig" rid="Ch1.F10"/>. The wind shear present in A400W
(Fig. <xref ref-type="fig" rid="Ch1.F13"/>) yields vertical mixing, which strongly enhances the
droplet production within the fog layer even at the initial phase
(Fig. <xref ref-type="fig" rid="Ch1.F10"/>). The mixing and perturbations in radiative heating, as
compared to the zero-wind experiments, produce the neutral temperature
stratification quite quickly and the strength of the inversion at the top of
the fog is also slightly reduced, as shown by Fig. <xref ref-type="fig" rid="Ch1.F13"/>. This
allows for more rapid growth of the fog layer, the depth of which reaches over
150 m by morning. This is even deeper than suggested by the observations,
and can be attributed to, e.g., missing advection effects or possible
differences in the initial moisture or temperature profiles. At the same time
the increased mixing enhances droplet activation and decreases the
differences caused by changing the initial aerosol concentration (not shown).</p>
      <p>The results point towards the importance of a detailed representation of the
microphysical processes in cases of fog formation. In particular, the
size-resolving microphysics in UCLALES–SALSA result in a peak number
concentration in the fog droplet size distribution at approximately
<inline-formula><mml:math display="inline"><mml:mn>25</mml:mn></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in terms of the wet diameter, which agrees with the
observed range between <inline-formula><mml:math display="inline"><mml:mn>20</mml:mn></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mn>25</mml:mn></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m based on the measurements
presented in <xref ref-type="bibr" rid="bib1.bibx41" id="text.75"/>. This has many positive implications, since
realistically capturing the droplet growth is important for representing the
droplet sedimentation, which is an essential driver for the fog evolution.
The droplet number concentration in experiment A400
(Fig. <xref ref-type="fig" rid="Ch1.F10"/>) agrees quite well with the observed range
(20–60 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) illustrated in <xref ref-type="bibr" rid="bib1.bibx40" id="text.76"/> as well before the fog
layer rises to form low-level stratus in the morning. Similar values are also
seen for A400W in the development phase before midnight. However, after
midnight the droplet number concentration increases substantially due to
activation of even smaller particles as the mixing intensifies because of the
wind shear and reduced stability. The resulting high droplet concentrations
owe at least in part to the fact that detailed information about the aerosol
size distribution was not available. Nevertheless, it is clear that these
microphysical aspects are directly linked to the fog and boundary layer
dynamics. An increased fog optical depth due to an increased droplet
concentration will delay fog evaporation in the morning after sunrise, which
thus couples the aerosol concentration with fog occurrence. However, to fully
evaluate the aerosol effect on fog lifetime, a more detailed land surface
scheme is needed to correctly simulate the latent heat flux and atmospheric
water content after sunrise.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p>The implementation of a novel bin-microphysics scheme for aerosol, clouds and
precipitation in an LES model was presented. The coupled model is based on
well-established components: the UCLALES large-eddy simulation model and the
SALSA aerosol model, extended with cloud droplets and rain. The bin system
for aerosol and clouds follows a unique approach, where the size bins are
defined according to the dry particle size for both activated and
non-activated particles in an attempt to hold detailed information about the
aerosol size distribution both in ambient air and within clouds. This also
enables an elaborate description of the effects of cloud processing through
collision–coalescence on the properties of the aerosol population as well as
a size and composition-resolved simulation of the wet scavenging of aerosol.</p>
      <p>The model was tested and evaluated using two well-characterised cases, which
have also been simulated with LES models in previous work: one comprising
marine stratocumulus clouds from the DYCOMS-II campaign and another based on
measurements of a radiation fog event in Cardington, UK. For the
stratocumulus experiments, UCLALES–SALSA initially produced very similar
cloud and boundary layer properties as other LES model versions, many of
which rely on bulk microphysics and prescribed particle or droplet
concentrations. However, after about 5 h UCLALES–SALSA shifted towards a
very different boundary layer state, as compared to the standard version of
UCLALES, resulting in a thin stratiform cloud deck at the top of a decoupled
layer instead of a solid stratocumulus cloud layer. This shift was attributed
to the wet removal of aerosol particles through precipitation, which
eventually led to a decrease in cloud droplet number and water content. This
enhanced the susceptibility of the boundary layer to undergo a significant
decoupling, which was triggered by the change in radiation budged during
sunrise, which then yielded even more dramatic shift in the cloud properties,
forming a feedback loop. Such behaviour was not reproduced by the standard
UCLALES nor by most of the models used in <xref ref-type="bibr" rid="bib1.bibx2" id="text.77"/>, which is due
to the use of prescribed microphysical properties and the lack of
interactions treated by the model. While the transition in the cloud
properties simulated by UCLALES–SALSA resembles closed-to-open-cell
transitions in marine stratocumulus, it is noted that the rather small model
domain (<inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>) is much too small to represent the circulation
dynamics and feedbacks closely related to the real-world mesoscale
morphological transitions. Nevertheless, the results are encouraging and show
that the model may very well provide the necessary new information related to
aerosol–cloud–precipitation interactions in future studies to explain the
observed stratocumulus characteristics.</p>
      <p>In another set of experiments, the skill of the model in simulating fog
formation and development was shown. The model was able to capture the
evolution of the fog radiative properties and the resulting changes in the
thermodynamical profiles. While increasing the initial aerosol concentration
had only slight impact on the growth of the fog-layer depth, larger particle
concentrations did clearly affect the rate of evolution of the temperature
profile, which showed a transition from very stable conditions to an
eventually almost neutral profile. This is qualitatively in agreement with
the observed behaviour <xref ref-type="bibr" rid="bib1.bibx41" id="paren.78"/>. While the growth of the fog-layer
depth was clearly underestimated, as compared to observations, when the model
was initialised with zero-wind speeds, setting a realistic wind profile
resulted in a growth rate very similar to the observations. With horizontal
wind present, the formation of a neutral temperature stratification is even
more pronounced than with zero-wind conditions and even more resembles the
observed properties. <xref ref-type="bibr" rid="bib1.bibx40" id="text.79"/> identified advection and drainage
flows as plausible explanations for the discrepancy between their model and
observations. The results presented in this study also bear these
deficiencies and are also affected by other shortcomings, such as the surface
scheme, which is most likely over simplified. The remaining differences
between the radiation fog simulated by UCLALES–SALSA and the observations
notwithstanding, the results of this study still make a strong point for a
very detailed representation of aerosol and cloud microphysics in simulating
the fog evolution.</p>
      <p>The need for high-resolution models that can accurately simulate the effects
of aerosol–cloud interactions on both aerosols and clouds and couple these
effects to the dynamical features of the atmosphere is clearly highlighted by
the current challenges, e.g., in climate research. UCLALES–SALSA provides these
abilities making it a highly sophisticated, yet computationally relatively
efficient, alternative to investigate the role of aerosol in marine
stratocumulus clouds or fog, or the process of wet scavenging. Although the
model is currently limited to warm clouds only, implementation of ice
processes is on the way and will be published in a separate paper. Work is
currently being done also to add treatment of semi-volatile aerosol species in the
model and to couple the aerosol fields with radiation computation. This will
extend the repertoire of the model towards more elaborate studies of the
aerosol–cloud interactions as well as towards ice and mixed-phase clouds,
whose representation in climate models and the deficiencies therein have
recently started to attract more widespread interest.</p>
</sec>
<sec id="Ch1.S6">
  <title>Code availability</title>
      <p>The model source code and input files needed to reproduce the simulations
presented in this paper can be downloaded from Github at
<uri>https://github.com/UCLALES-SALSA</uri>.</p>
</sec>

      
      </body>
    <back><ack><title>Acknowledgements</title><p>This work was supported by the Academy of Finland (project no. 283031 and the
Centre of Excellence in Atmospheric Science, no. 272041), the European FP7
project BACCHUS (grant agreement no. 603445) and the European Research
Council project ECLAIR (grant no. 646857). We gratefully acknowledge
Bjorn Stevens for providing the UCLALES code. We thank the two anonymous
reviewers for their constructive comments.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: S. Remy<?xmltex \hack{\newline}?>
Reviewed by: two anonymous referees</p></ack><ref-list>
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<abstract-html><p class="p">Challenges in understanding the aerosol–cloud interactions and their impacts
on global climate highlight the need for improved knowledge of the underlying
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cloud deck and the formation of a decoupled boundary layer structure. In
radiation fog, the growth and sedimentation of droplets strongly affect their
radiative properties, which in turn drive new droplet formation. The
size-resolved diagnostics provided by the model enable investigations of
these issues with high detail. It is also shown that the results remain
consistent with UCLALES (without SALSA) in cases where the dominating
physical processes remain well represented by both models.</p></abstract-html>
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